AT1G01010.1	chr1:000003760	0.0	W/3760-3913,3996-4276,4486-4605,4706-5095,5174-5326,5439-5630	AT1G01010.1 CDS AT1G01010 ID=AT1G01010.1; Parent=AT1G01010; Name=AT1G01010.1; Note=NAC domain containing protein 1; conf_class=2; symbol=NAC001; Alias=ANAC001, NAC domain containing protein 1; full_name=NAC domain containing protein 1; computational_description=NAC domain containing protein 1 (NAC001)%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: multicellular organismal development%2C regulation of transcription%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 7 plant structures%3B EXPRESSED DURING: 4 anthesis%2C C globular stage%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441)%3B BEST Arabidopsis thaliana protein match is: NAC domain containing protein 69 (TAIR:AT4G01550.1)%3B Has 2503 Blast hits to 2496 proteins in 69 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 2502%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:12820902, PMID:15029955, PMID:15010618, PMID:15108305, PMID:15173566, PMID:15282545, PMID:16504176, PMID:16547105, PMID:16524982, PMID:16720694, PMID:16552445, PMID:17339215, PMID:17448460, PMID:17447913, PMID:18650403, PMID:20736450, PMID:24377444, locus:2200935; locus_type=protein_coding
AT1G01020.1	chr1:000006915	0.0	C/6915-7069,7157-7232,7384-7450,7564-7649,7762-7835,7942-7987,8236-8325,8417-8464,8571-8666	AT1G01020.1 CDS AT1G01020 ID=AT1G01020.1; Parent=AT1G01020; Name=AT1G01020.1; Note=ARV1 family protein; conf_class=2; symbol=ARV1; computational_description=ARV1%3B CONTAINS InterPro DOMAIN/s: Arv1-like protein (InterPro:IPR007290)%3B BEST Arabidopsis thaliana protein match is: Arv1-like protein (TAIR:AT4G01510.1)%3B Has 311 Blast hits to 311 proteins in 154 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 110%3B Fungi - 115%3B Plants - 42%3B Viruses - 0%3B Other Eukaryotes - 44 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15010618, locus:2200940; locus_type=protein_coding
AT1G01020.3	chr1:000006915	0.0	C/6915-7069,7157-7232,7384-7450,7564-7649,7762-7835,7942-7987,8236-8442	AT1G01020.3 CDS AT1G01020 ID=AT1G01020.3; Parent=AT1G01020; Name=AT1G01020.3; Note=ARV1 family protein; symbol=ARV1; computational_description=ARV1%3B CONTAINS InterPro DOMAIN/s: Arv1-like protein (InterPro:IPR007290)%3B BEST Arabidopsis thaliana protein match is: Arv1-like protein (TAIR:AT4G01510.1)%3B Has 311 Blast hits to 311 proteins in 154 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 110%3B Fungi - 115%3B Plants - 42%3B Viruses - 0%3B Other Eukaryotes - 44 (source: NCBI BLink).; Dbxref=PMID:15010618, locus:2200940; locus_type=protein_coding
AT1G01020.4	chr1:000006915	0.0	C/6915-7069,7157-7232,7384-7450,7564-7649,7762-7835,7942-7987,8236-8442	AT1G01020.4 CDS AT1G01020 ID=AT1G01020.4; Parent=AT1G01020; Name=AT1G01020.4; Note=ARV1 family protein; symbol=ARV1; computational_description=ARV1%3B CONTAINS InterPro DOMAIN/s: Arv1-like protein (InterPro:IPR007290)%3B BEST Arabidopsis thaliana protein match is: Arv1-like protein (TAIR:AT4G01510.1)%3B Has 311 Blast hits to 311 proteins in 154 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 110%3B Fungi - 115%3B Plants - 42%3B Viruses - 0%3B Other Eukaryotes - 44 (source: NCBI BLink).; Dbxref=PMID:15010618, locus:2200940; locus_type=protein_coding
AT1G01020.5	chr1:000006915	0.0	C/6915-7069,7157-7232,7384-7450,7564-7649,7762-7835,7942-7987,8236-8325,8417-8419	AT1G01020.5 CDS AT1G01020 ID=AT1G01020.5; Parent=AT1G01020; Name=AT1G01020.5; Note=ARV1 family protein; symbol=ARV1; computational_description=ARV1%3B CONTAINS InterPro DOMAIN/s: Arv1-like protein (InterPro:IPR007290)%3B BEST Arabidopsis thaliana protein match is: Arv1-like protein (TAIR:AT4G01510.1)%3B Has 311 Blast hits to 311 proteins in 154 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 110%3B Fungi - 115%3B Plants - 42%3B Viruses - 0%3B Other Eukaryotes - 44 (source: NCBI BLink).; Dbxref=PMID:15010618, locus:2200940; locus_type=protein_coding
AT1G01020.2	chr1:000007315	0.0	C/7315-7450,7564-7649,7762-7835,7942-7987,8236-8325,8417-8464,8571-8666	AT1G01020.2 CDS AT1G01020 ID=AT1G01020.2; Parent=AT1G01020; Name=AT1G01020.2; Note=ARV1 family protein; conf_class=2; symbol=ARV1; computational_description=ARV1%3B CONTAINS InterPro DOMAIN/s: Arv1-like protein (InterPro:IPR007290)%3B BEST Arabidopsis thaliana protein match is: Arv1-like protein (TAIR:AT4G01510.1)%3B Has 311 Blast hits to 311 proteins in 154 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 110%3B Fungi - 115%3B Plants - 42%3B Viruses - 0%3B Other Eukaryotes - 44 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15010618, locus:2200940; locus_type=protein_coding
AT1G01020.6	chr1:000007315	0.0	C/7315-7450,7564-7649,8236-8325,8417-8419	AT1G01020.6 CDS AT1G01020 ID=AT1G01020.6; Parent=AT1G01020; Name=AT1G01020.6; Note=ARV1 family protein; symbol=ARV1; computational_description=ARV1%3B CONTAINS InterPro DOMAIN/s: Arv1-like protein (InterPro:IPR007290)%3B BEST Arabidopsis thaliana protein match is: Arv1-like protein (TAIR:AT4G01510.1)%3B Has 311 Blast hits to 311 proteins in 154 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 110%3B Fungi - 115%3B Plants - 42%3B Viruses - 0%3B Other Eukaryotes - 44 (source: NCBI BLink).; Dbxref=PMID:15010618, locus:2200940; locus_type=protein_coding
AT1G03987.1	chr1:000011101	0.0	W/11101-11372	AT1G03987.1 lnc_RNA AT1G03987 ID=AT1G03987.1; Parent=AT1G03987; Name=AT1G03987.1; locus_type=long_noncoding_rna
AT1G01030.1	chr1:000011864	0.0	C/11864-12940	AT1G01030.1 CDS AT1G01030 ID=AT1G01030.1; Parent=AT1G01030; Name=AT1G01030.1; Note=AP2/B3-like transcriptional factor family protein; conf_class=2; symbol=NGA3; full_name=NGATHA3; computational_description=NGATHA3 (NGA3)%3B CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340)%3B BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT4G01500.1)%3B Has 1380 Blast hits to 1379 proteins in 72 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1380%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:15010618, PMID:16603651, PMID:16709272, PMID:16944199, PMID:18650403, PMID:19324928, PMID:19435937, PMID:20736450, PMID:22995285, PMID:24377444, PMID:25625546, locus:2200950; locus_type=protein_coding
AT1G01030.2	chr1:000011864	0.0	C/11864-12354,12424-12940	AT1G01030.2 CDS AT1G01030 ID=AT1G01030.2; Parent=AT1G01030; Name=AT1G01030.2; Note=AP2/B3-like transcriptional factor family protein; symbol=NGA3; full_name=NGATHA3; computational_description=NGATHA3 (NGA3)%3B CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340)%3B BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT4G01500.1)%3B Has 1380 Blast hits to 1379 proteins in 72 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1380%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=PMID:11118137, PMID:15010618, PMID:16603651, PMID:16709272, PMID:16944199, PMID:18650403, PMID:19324928, PMID:19435937, PMID:20736450, PMID:22995285, PMID:24377444, PMID:25625546, locus:2200950; locus_type=protein_coding
AT1TE00010	chr1:000011897	0.0	W/11897-11976	AT1TE00010 transposable_element AT1TE00010 ID=AT1TE00010; Name=AT1TE00010; Alias=ATCOPIA24
AT1TE00020	chr1:000016883	0.0	C/16883-17009	AT1TE00020 transposable_element AT1TE00020 ID=AT1TE00020; Name=AT1TE00020; Alias=ATREP4
AT1TE00025	chr1:000017024	0.0	W/17024-18330,18643-18924	AT1TE00025 transposable_element AT1TE00025 ID=AT1TE00025; Name=AT1TE00025; Alias=ATREP3
AT1TE00030	chr1:000018331	0.0	C/18331-18642	AT1TE00030 transposable_element AT1TE00030 ID=AT1TE00030; Name=AT1TE00030; Alias=ATHATN7
AT1G03993.1	chr1:000023312	0.0	C/23312-24099	AT1G03993.1 antisense_lncRNA AT1G03993 ID=AT1G03993.1; Parent=AT1G03993; Name=AT1G03993.1; description=Natural antisense transcript overlaps with AT1G01040; Note=Natural antisense transcript overlaps with AT1G01040; locus_type=antisense_long_noncoding_rna
AT1G01040.1	chr1:000023519	0.0	W/23519-24451,24542-24655,24752-24962,25041-25435,25524-25743,25825-25997,26081-26203,26292-26452,26543-26776,26862-27012,27099-27281,27372-27533,27618-27713,27803-28431,28708-28805,28890-29080,29160-30065,30147-30311,30410-30816,30902-31079	AT1G01040.1 CDS AT1G01040 ID=AT1G01040.1; Parent=AT1G01040; Name=AT1G01040.1; Note=dicer-like 1; curator_summary=Encodes a Dicer homolog. Dicer is a RNA helicase involved in microRNA processing. Mutations in this locus can result in embryo lethality. Embryo shape at seed maturity is globular-elongate. Other mutants convert the floral meristems to an indeterminate state%2C others yet show defects in ovule development. mRNA is expressed in all shoot tissues. DCL1 is able to produce miRNAs and siRNAs.; conf_class=2; symbol=DCL1; Alias=ASU1, ABNORMAL SUSPENSOR 1, ATDCL1, DICER-LIKE 1, CAF, CARPEL FACTORY, EMB60, EMBRYO DEFECTIVE 60, EMB76, EMBRYO DEFECTIVE 76, SIN1, SHORT INTEGUMENTS 1, SUS1, SUSPENSOR 1; full_name=dicer-like 1; computational_description=dicer-like 1 (DCL1)%3B CONTAINS InterPro DOMAIN/s: Restriction endonuclease%2C type I%2C R subunit/Type III%2C Res subunit (InterPro:IPR006935)%2C Double-stranded RNA-binding (InterPro:IPR001159)%2C Argonaute/Dicer protein%2C PAZ (InterPro:IPR003100)%2C Ribonuclease III (InterPro:IPR000999)%2C Double-stranded RNA-binding-like (InterPro:IPR014720)%2C DEAD-like helicase%2C N-terminal (InterPro:IPR014001)%2C DNA/RNA helicase%2C C-terminal (InterPro:IPR001650)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain (InterPro:IPR014021)%2C Dicer double-stranded RNA-binding fold (InterPro:IPR005034)%3B BEST Arabidopsis thaliana protein match is: dicer-like 3 (TAIR:AT3G43920.2)%3B Has 21958 Blast hits to 17420 proteins in 2982 species: Archae - 328%3B Bacteria - 11461%3B Metazoa - 3615%3B Fungi - 1668%3B Plants - 1373%3B Viruses - 45%3B Other Eukaryotes - 3468 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10556049, PMID:8948599, PMID:8787738, PMID:7982564, PMID:12101121, PMID:12324593, PMID:12297633, PMID:12225663, PMID:12417148, PMID:12376646, PMID:12573220, PMID:12747833, PMID:12725739, PMID:12857820, PMID:14972688, PMID:15024409, PMID:15314213, PMID:15469823, PMID:15851028, PMID:16033795, PMID:16111943, PMID:16096641, PMID:16040244, PMID:16141062, PMID:16144699, PMID:15821876, PMID:16214897, PMID:16428603, PMID:16500993, PMID:16699516, PMID:16682354, PMID:16810317, PMID:16889646, PMID:17090584, PMID:17182867, PMID:17164336, PMID:17337628, PMID:17369351, PMID:17442570, PMID:17558406, PMID:17675322, PMID:18003861, PMID:18208512, PMID:18550839, PMID:18650403, PMID:18632581, PMID:18632569, PMID:18625233, PMID:18799732, PMID:18842626, PMID:18997003, PMID:19221817, PMID:17071740, PMID:18551175, PMID:19155326, PMID:19307293, PMID:19436261, PMID:19816405, PMID:20106953, PMID:20409179, PMID:20462493, PMID:20439431, PMID:20621980, PMID:20870966, PMID:19649244, PMID:19953107, PMID:21123653, PMID:21330492, PMID:21295131, PMID:21378120, PMID:21589905, PMID:21685453, PMID:22439910, PMID:22474216, PMID:22589469, PMID:22802657, PMID:22902697, PMID:22846193, PMID:23110057, PMID:23268445, PMID:23313986, PMID:23424246, PMID:23399598, PMID:23457227, PMID:23194006, PMID:23886622, PMID:23847640, PMID:23941160, PMID:23934148, PMID:23921632, PMID:24018204, PMID:24092744, PMID:24137006, PMID:24204292, PMID:24531234, PMID:24670663, PMID:24769482, PMID:24731939, PMID:24717238, PMID:24784759, PMID:25226037, PMID:25409478, PMID:25491479, PMID:25474114, PMID:25443390, PMID:23104109, locus:2200960; locus_type=protein_coding
AT1G01040.2	chr1:000023519	0.0	W/23519-24451,24542-24655,24752-24962,25041-25435,25524-25743,25825-25997,26081-26203,26292-26452,26543-26776,26862-27012,27099-27281,27372-27536,27618-27713,27803-28431,28708-28805,28890-29080,29160-30065,30147-30311,30410-30816,30902-31079	AT1G01040.2 CDS AT1G01040 ID=AT1G01040.2; Parent=AT1G01040; Name=AT1G01040.2; Note=dicer-like 1; curator_summary=Encodes a Dicer homolog. Dicer is a RNA helicase involved in microRNA processing. Mutations in this locus can result in embryo lethality. Embryo shape at seed maturity is globular-elongate. Other mutants convert the floral meristems to an indeterminate state%2C others yet show defects in ovule development. mRNA is expressed in all shoot tissues. DCL1 is able to produce miRNAs and siRNAs.; conf_class=2; symbol=DCL1; Alias=ASU1, ABNORMAL SUSPENSOR 1, ATDCL1, DICER-LIKE 1, CAF, CARPEL FACTORY, EMB60, EMBRYO DEFECTIVE 60, EMB76, EMBRYO DEFECTIVE 76, SIN1, SHORT INTEGUMENTS 1, SUS1, SUSPENSOR 1; full_name=dicer-like 1; computational_description=dicer-like 1 (DCL1)%3B CONTAINS InterPro DOMAIN/s: Restriction endonuclease%2C type I%2C R subunit/Type III%2C Res subunit (InterPro:IPR006935)%2C Double-stranded RNA-binding (InterPro:IPR001159)%2C Argonaute/Dicer protein%2C PAZ (InterPro:IPR003100)%2C Ribonuclease III (InterPro:IPR000999)%2C Double-stranded RNA-binding-like (InterPro:IPR014720)%2C DEAD-like helicase%2C N-terminal (InterPro:IPR014001)%2C DNA/RNA helicase%2C C-terminal (InterPro:IPR001650)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain (InterPro:IPR014021)%2C Dicer double-stranded RNA-binding fold (InterPro:IPR005034)%3B BEST Arabidopsis thaliana protein match is: dicer-like 3 (TAIR:AT3G43920.2)%3B Has 21958 Blast hits to 17420 proteins in 2982 species: Archae - 328%3B Bacteria - 11461%3B Metazoa - 3615%3B Fungi - 1668%3B Plants - 1373%3B Viruses - 45%3B Other Eukaryotes - 3468 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10556049, PMID:8948599, PMID:8787738, PMID:7982564, PMID:12101121, PMID:12324593, PMID:12297633, PMID:12225663, PMID:12417148, PMID:12376646, PMID:12573220, PMID:12747833, PMID:12725739, PMID:12857820, PMID:14972688, PMID:15024409, PMID:15314213, PMID:15469823, PMID:15851028, PMID:16033795, PMID:16111943, PMID:16096641, PMID:16040244, PMID:16141062, PMID:16144699, PMID:15821876, PMID:16214897, PMID:16428603, PMID:16500993, PMID:16699516, PMID:16682354, PMID:16810317, PMID:16889646, PMID:17090584, PMID:17182867, PMID:17164336, PMID:17337628, PMID:17369351, PMID:17442570, PMID:17558406, PMID:17675322, PMID:18003861, PMID:18208512, PMID:18550839, PMID:18650403, PMID:18632581, PMID:18632569, PMID:18625233, PMID:18799732, PMID:18842626, PMID:18997003, PMID:19221817, PMID:17071740, PMID:18551175, PMID:19155326, PMID:19307293, PMID:19436261, PMID:19816405, PMID:20106953, PMID:20409179, PMID:20462493, PMID:20439431, PMID:20621980, PMID:20870966, PMID:19649244, PMID:19953107, PMID:21123653, PMID:21330492, PMID:21295131, PMID:21378120, PMID:21589905, PMID:21685453, PMID:22439910, PMID:22474216, PMID:22589469, PMID:22802657, PMID:22902697, PMID:22846193, PMID:23110057, PMID:23268445, PMID:23313986, PMID:23424246, PMID:23399598, PMID:23457227, PMID:23194006, PMID:23886622, PMID:23847640, PMID:23941160, PMID:23934148, PMID:23921632, PMID:24018204, PMID:24092744, PMID:24137006, PMID:24204292, PMID:24531234, PMID:24670663, PMID:24769482, PMID:24731939, PMID:24717238, PMID:24784759, PMID:25226037, PMID:25409478, PMID:25491479, PMID:25474114, PMID:25443390, PMID:23104109, locus:2200960; locus_type=protein_coding
AT1G01046.1	chr1:000028500	0.0	W/28500-28706	AT1G01046.1 miRNA_primary_transcript AT1G01046 ID=AT1G01046.1; Parent=AT1G01046; Alias=p_MI0005394; Name=ath-MIR838; symbol=MIR838A; curator_summary=Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UUUUCUUCUACUUCUUGCACA; Note=microRNA ath-MIR838 precursor; full_name=microRNA838A; Dbxref=locus:4515102484, locus:4515102484; locus_type=mirna
ath-miR838	chr1:000028635	0.0	W/28635-28655	ath-miR838 miRNA ath-miR838 ID=ath-miR838; Alias=MIMAT0004260; Name=ath-miR838; Derives_from=AT1G01046.1; Note=microRNA ath-miR838; computational_description=mature miRNA accession:MIMAT0004260
AT1G01050.1	chr1:000031382	0.0	C/31382-31424,31521-31602,31693-31813,31933-31998,32088-32195,32282-32347,32431-32459,32547-32670	AT1G01050.1 CDS AT1G01050 ID=AT1G01050.1; Parent=AT1G01050; Name=AT1G01050.1; Note=pyrophosphorylase 1; curator_summary=Encodes a soluble protein with inorganic pyrophosphatase activity that is highly specific for Mg-inorganic pyrophosphate.; conf_class=2; symbol=PPa1; Alias=AtPPa1, pyrophosphorylase 1; full_name=pyrophosphorylase 1; computational_description=pyrophosphorylase 1 (PPa1)%3B FUNCTIONS IN: inorganic diphosphatase activity%3B INVOLVED IN: phosphate metabolic process%2C metabolic process%3B LOCATED IN: nucleus%2C membrane%2C cytoplasm%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Inorganic pyrophosphatase (InterPro:IPR008162)%3B BEST Arabidopsis thaliana protein match is: pyrophosphorylase 3 (TAIR:AT2G46860.1)%3B Has 5987 Blast hits to 5987 proteins in 1845 species: Archae - 172%3B Bacteria - 4313%3B Metazoa - 247%3B Fungi - 261%3B Plants - 270%3B Viruses - 0%3B Other Eukaryotes - 724 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15135060, PMID:15610358, PMID:15703057, PMID:18775970, PMID:22566496, PMID:23438466, PMID:25663508, locus:2200965; locus_type=protein_coding
AT1G01050.2	chr1:000031382	0.0	C/31382-31424,31521-31602,31693-31813,31933-31998,32088-32195,32282-32347,32431-32459,32547-32670	AT1G01050.2 CDS AT1G01050 ID=AT1G01050.2; Parent=AT1G01050; Name=AT1G01050.2; Note=pyrophosphorylase 1; symbol=PPa1; Alias=AtPPa1, pyrophosphorylase 1; full_name=pyrophosphorylase 1; Dbxref=PMID:15135060, PMID:15610358, PMID:15703057, PMID:18775970, PMID:22566496, PMID:23438466, PMID:25663508, locus:2200965; curator_summary=Encodes a soluble protein with inorganic pyrophosphatase activity that is highly specific for Mg-inorganic pyrophosphate.; computational_description=pyrophosphorylase 1 (PPa1)%3B FUNCTIONS IN: inorganic diphosphatase activity%3B INVOLVED IN: phosphate metabolic process%2C metabolic process%3B LOCATED IN: nucleus%2C membrane%2C cytoplasm%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Inorganic pyrophosphatase (InterPro:IPR008162)%3B BEST Arabidopsis thaliana protein match is: pyrophosphorylase 3 (TAIR:AT2G46860.1)%3B Has 5987 Blast hits to 5987 proteins in 1845 species: Archae - 172%3B Bacteria - 4313%3B Metazoa - 247%3B Fungi - 261%3B Plants - 270%3B Viruses - 0%3B Other Eukaryotes - 724 (source: NCBI BLink).; locus_type=protein_coding
AT1G03997.1	chr1:000032727	0.0	W/32727-33009	AT1G03997.1 antisense_lncRNA AT1G03997 ID=AT1G03997.1; Parent=AT1G03997; Name=AT1G03997.1; description=Natural antisense transcript overlaps with AT1G01050; Note=Natural antisense transcript overlaps with AT1G01050; locus_type=antisense_long_noncoding_rna
AT1G01060.1	chr1:000033992	0.0	C/33992-34327,34401-35474,35567-35647,35730-35963,36624-36685,36810-36921,37023-37061	AT1G01060.1 CDS AT1G01060 ID=AT1G01060.1; Parent=AT1G01060; Name=AT1G01060.1; Note=Homeodomain-like superfamily protein; curator_summary=LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1; conf_class=3; symbol=LHY; Alias=LHY1, LATE ELONGATED HYPOCOTYL 1; full_name=LATE ELONGATED HYPOCOTYL; computational_description=LATE ELONGATED HYPOCOTYL (LHY)%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%2C Myb-like DNA-binding domain%2C SHAQKYF class (InterPro:IPR006447)%3B BEST Arabidopsis thaliana protein match is: circadian clock associated 1 (TAIR:AT2G46830.1)%3B Has 2469 Blast hits to 2022 proteins in 280 species: Archae - 2%3B Bacteria - 257%3B Metazoa - 292%3B Fungi - 162%3B Plants - 1048%3B Viruses - 29%3B Other Eukaryotes - 679 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10645431, PMID:10535927, PMID:10477524, PMID:10469647, PMID:10097183, PMID:10023572, PMID:9657154, PMID:9657153, PMID:11118137, PMID:11158533, PMID:11486091, PMID:11402160, PMID:12015970, PMID:12007421, PMID:12068102, PMID:12096093, PMID:11828023, PMID:12198185, PMID:12461138, PMID:12509533, PMID:12574129, PMID:12668783, PMID:12777053, PMID:14563930, PMID:14558659, PMID:14523250, PMID:14634162, PMID:14741378, PMID:15310821, PMID:15649364, PMID:15734916, PMID:15767265, PMID:15923346, PMID:16006578, PMID:16212608, PMID:16463103, PMID:16524874, PMID:16617099, PMID:17132630, PMID:17122071, PMID:17098855, PMID:17363273, PMID:17468223, PMID:17519251, PMID:17504813, PMID:17496120, PMID:17483414, PMID:17587236, PMID:17540692, PMID:17616736, PMID:17877705, PMID:17982000, PMID:18182014, PMID:18178585, PMID:18281507, PMID:18281417, PMID:18480377, PMID:18650403, PMID:18707796, PMID:18676661, PMID:19011118, PMID:19098071, PMID:19095940, PMID:19060255, PMID:19218364, PMID:19297549, PMID:19286557, PMID:19339503, PMID:19542296, PMID:15725674, PMID:15988568, PMID:16729048, PMID:16709197, PMID:17102804, PMID:18460819, PMID:19029881, PMID:19140936, PMID:19383102, PMID:19380736, PMID:19624471, PMID:19843842, PMID:19820331, PMID:19805390, PMID:19789276, PMID:20154425, PMID:20119844, PMID:20335405, PMID:20233950, PMID:20354196, PMID:20439704, PMID:20433765, PMID:20599732, PMID:20736450, PMID:21098730, PMID:21183706, PMID:21139085, PMID:21205033, PMID:21196476, PMID:21236675, PMID:21331777, PMID:21296763, PMID:21447790, PMID:21454289, PMID:21499259, PMID:21483796, PMID:21471455, PMID:21848684, PMID:21822060, PMID:21884973, PMID:21884969, PMID:22353866, PMID:22315425, PMID:22311777, PMID:22408072, PMID:22395476, PMID:22715042, PMID:22672153, PMID:22899064, PMID:22878891, PMID:23006446, PMID:22995285, PMID:23107921, PMID:23144785, PMID:23128602, PMID:23307650, PMID:23511208, PMID:23555221, PMID:23645632, PMID:23777196, PMID:23754942, PMID:23506153, PMID:23933882, PMID:23830866, PMID:24377444, PMID:24484962, PMID:24792048, PMID:25264899, locus:2200970; locus_type=protein_coding
AT1G01060.2	chr1:000033992	0.0	C/33992-34327,34401-35474,35567-35647,35730-35963,36624-36685,36810-36921,37023-37061	AT1G01060.2 CDS AT1G01060 ID=AT1G01060.2; Parent=AT1G01060; Name=AT1G01060.2; Note=Homeodomain-like superfamily protein; curator_summary=LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1; conf_class=2; symbol=LHY; Alias=LHY1, LATE ELONGATED HYPOCOTYL 1; full_name=LATE ELONGATED HYPOCOTYL; computational_description=LATE ELONGATED HYPOCOTYL (LHY)%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%2C Myb-like DNA-binding domain%2C SHAQKYF class (InterPro:IPR006447)%3B BEST Arabidopsis thaliana protein match is: circadian clock associated 1 (TAIR:AT2G46830.1)%3B Has 2469 Blast hits to 2022 proteins in 280 species: Archae - 2%3B Bacteria - 257%3B Metazoa - 292%3B Fungi - 162%3B Plants - 1048%3B Viruses - 29%3B Other Eukaryotes - 679 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10645431, PMID:10535927, PMID:10477524, PMID:10469647, PMID:10097183, PMID:10023572, PMID:9657154, PMID:9657153, PMID:11118137, PMID:11158533, PMID:11486091, PMID:11402160, PMID:12015970, PMID:12007421, PMID:12068102, PMID:12096093, PMID:11828023, PMID:12198185, PMID:12461138, PMID:12509533, PMID:12574129, PMID:12668783, PMID:12777053, PMID:14563930, PMID:14558659, PMID:14523250, PMID:14634162, PMID:14741378, PMID:15310821, PMID:15649364, PMID:15734916, PMID:15767265, PMID:15923346, PMID:16006578, PMID:16212608, PMID:16463103, PMID:16524874, PMID:16617099, PMID:17132630, PMID:17122071, PMID:17098855, PMID:17363273, PMID:17468223, PMID:17519251, PMID:17504813, PMID:17496120, PMID:17483414, PMID:17587236, PMID:17540692, PMID:17616736, PMID:17877705, PMID:17982000, PMID:18182014, PMID:18178585, PMID:18281507, PMID:18281417, PMID:18480377, PMID:18650403, PMID:18707796, PMID:18676661, PMID:19011118, PMID:19098071, PMID:19095940, PMID:19060255, PMID:19218364, PMID:19297549, PMID:19286557, PMID:19339503, PMID:19542296, PMID:15725674, PMID:15988568, PMID:16729048, PMID:16709197, PMID:17102804, PMID:18460819, PMID:19029881, PMID:19140936, PMID:19383102, PMID:19380736, PMID:19624471, PMID:19843842, PMID:19820331, PMID:19805390, PMID:19789276, PMID:20154425, PMID:20119844, PMID:20335405, PMID:20233950, PMID:20354196, PMID:20439704, PMID:20433765, PMID:20599732, PMID:20736450, PMID:21098730, PMID:21183706, PMID:21139085, PMID:21205033, PMID:21196476, PMID:21236675, PMID:21331777, PMID:21296763, PMID:21447790, PMID:21454289, PMID:21499259, PMID:21483796, PMID:21471455, PMID:21848684, PMID:21822060, PMID:21884973, PMID:21884969, PMID:22353866, PMID:22315425, PMID:22311777, PMID:22408072, PMID:22395476, PMID:22715042, PMID:22672153, PMID:22899064, PMID:22878891, PMID:23006446, PMID:22995285, PMID:23107921, PMID:23144785, PMID:23128602, PMID:23307650, PMID:23511208, PMID:23555221, PMID:23645632, PMID:23777196, PMID:23754942, PMID:23506153, PMID:23933882, PMID:23830866, PMID:24377444, PMID:24484962, PMID:24792048, PMID:25264899, locus:2200970; locus_type=protein_coding
AT1G01060.3	chr1:000033992	0.0	C/33992-34327,34401-35474,35567-35647,35730-35963,36624-36685,36810-36921,37023-37061	AT1G01060.3 CDS AT1G01060 ID=AT1G01060.3; Parent=AT1G01060; Name=AT1G01060.3; Note=Homeodomain-like superfamily protein; curator_summary=LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1; conf_class=2; symbol=LHY; Alias=LHY1, LATE ELONGATED HYPOCOTYL 1; full_name=LATE ELONGATED HYPOCOTYL; computational_description=LATE ELONGATED HYPOCOTYL (LHY)%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%2C Myb-like DNA-binding domain%2C SHAQKYF class (InterPro:IPR006447)%3B BEST Arabidopsis thaliana protein match is: circadian clock associated 1 (TAIR:AT2G46830.1)%3B Has 2469 Blast hits to 2022 proteins in 280 species: Archae - 2%3B Bacteria - 257%3B Metazoa - 292%3B Fungi - 162%3B Plants - 1048%3B Viruses - 29%3B Other Eukaryotes - 679 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10645431, PMID:10535927, PMID:10477524, PMID:10469647, PMID:10097183, PMID:10023572, PMID:9657154, PMID:9657153, PMID:11118137, PMID:11158533, PMID:11486091, PMID:11402160, PMID:12015970, PMID:12007421, PMID:12068102, PMID:12096093, PMID:11828023, PMID:12198185, PMID:12461138, PMID:12509533, PMID:12574129, PMID:12668783, PMID:12777053, PMID:14563930, PMID:14558659, PMID:14523250, PMID:14634162, PMID:14741378, PMID:15310821, PMID:15649364, PMID:15734916, PMID:15767265, PMID:15923346, PMID:16006578, PMID:16212608, PMID:16463103, PMID:16524874, PMID:16617099, PMID:17132630, PMID:17122071, PMID:17098855, PMID:17363273, PMID:17468223, PMID:17519251, PMID:17504813, PMID:17496120, PMID:17483414, PMID:17587236, PMID:17540692, PMID:17616736, PMID:17877705, PMID:17982000, PMID:18182014, PMID:18178585, PMID:18281507, PMID:18281417, PMID:18480377, PMID:18650403, PMID:18707796, PMID:18676661, PMID:19011118, PMID:19098071, PMID:19095940, PMID:19060255, PMID:19218364, PMID:19297549, PMID:19286557, PMID:19339503, PMID:19542296, PMID:15725674, PMID:15988568, PMID:16729048, PMID:16709197, PMID:17102804, PMID:18460819, PMID:19029881, PMID:19140936, PMID:19383102, PMID:19380736, PMID:19624471, PMID:19843842, PMID:19820331, PMID:19805390, PMID:19789276, PMID:20154425, PMID:20119844, PMID:20335405, PMID:20233950, PMID:20354196, PMID:20439704, PMID:20433765, PMID:20599732, PMID:20736450, PMID:21098730, PMID:21183706, PMID:21139085, PMID:21205033, PMID:21196476, PMID:21236675, PMID:21331777, PMID:21296763, PMID:21447790, PMID:21454289, PMID:21499259, PMID:21483796, PMID:21471455, PMID:21848684, PMID:21822060, PMID:21884973, PMID:21884969, PMID:22353866, PMID:22315425, PMID:22311777, PMID:22408072, PMID:22395476, PMID:22715042, PMID:22672153, PMID:22899064, PMID:22878891, PMID:23006446, PMID:22995285, PMID:23107921, PMID:23144785, PMID:23128602, PMID:23307650, PMID:23511208, PMID:23555221, PMID:23645632, PMID:23777196, PMID:23754942, PMID:23506153, PMID:23933882, PMID:23830866, PMID:24377444, PMID:24484962, PMID:24792048, PMID:25264899, locus:2200970; locus_type=protein_coding
AT1G01060.4	chr1:000033992	0.0	C/33992-34327,34401-35471,35567-35647,35730-35963,36624-36685,36810-36921,37023-37061	AT1G01060.4 CDS AT1G01060 ID=AT1G01060.4; Parent=AT1G01060; Name=AT1G01060.4; Note=Homeodomain-like superfamily protein; curator_summary=LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1; conf_class=2; symbol=LHY; Alias=LHY1, LATE ELONGATED HYPOCOTYL 1; full_name=LATE ELONGATED HYPOCOTYL; computational_description=LATE ELONGATED HYPOCOTYL (LHY)%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%2C Myb-like DNA-binding domain%2C SHAQKYF class (InterPro:IPR006447)%3B BEST Arabidopsis thaliana protein match is: circadian clock associated 1 (TAIR:AT2G46830.1)%3B Has 2469 Blast hits to 2022 proteins in 280 species: Archae - 2%3B Bacteria - 257%3B Metazoa - 292%3B Fungi - 162%3B Plants - 1048%3B Viruses - 29%3B Other Eukaryotes - 679 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10645431, PMID:10535927, PMID:10477524, PMID:10469647, PMID:10097183, PMID:10023572, PMID:9657154, PMID:9657153, PMID:11118137, PMID:11158533, PMID:11486091, PMID:11402160, PMID:12015970, PMID:12007421, PMID:12068102, PMID:12096093, PMID:11828023, PMID:12198185, PMID:12461138, PMID:12509533, PMID:12574129, PMID:12668783, PMID:12777053, PMID:14563930, PMID:14558659, PMID:14523250, PMID:14634162, PMID:14741378, PMID:15310821, PMID:15649364, PMID:15734916, PMID:15767265, PMID:15923346, PMID:16006578, PMID:16212608, PMID:16463103, PMID:16524874, PMID:16617099, PMID:17132630, PMID:17122071, PMID:17098855, PMID:17363273, PMID:17468223, PMID:17519251, PMID:17504813, PMID:17496120, PMID:17483414, PMID:17587236, PMID:17540692, PMID:17616736, PMID:17877705, PMID:17982000, PMID:18182014, PMID:18178585, PMID:18281507, PMID:18281417, PMID:18480377, PMID:18650403, PMID:18707796, PMID:18676661, PMID:19011118, PMID:19098071, PMID:19095940, PMID:19060255, PMID:19218364, PMID:19297549, PMID:19286557, PMID:19339503, PMID:19542296, PMID:15725674, PMID:15988568, PMID:16729048, PMID:16709197, PMID:17102804, PMID:18460819, PMID:19029881, PMID:19140936, PMID:19383102, PMID:19380736, PMID:19624471, PMID:19843842, PMID:19820331, PMID:19805390, PMID:19789276, PMID:20154425, PMID:20119844, PMID:20335405, PMID:20233950, PMID:20354196, PMID:20439704, PMID:20433765, PMID:20599732, PMID:20736450, PMID:21098730, PMID:21183706, PMID:21139085, PMID:21205033, PMID:21196476, PMID:21236675, PMID:21331777, PMID:21296763, PMID:21447790, PMID:21454289, PMID:21499259, PMID:21483796, PMID:21471455, PMID:21848684, PMID:21822060, PMID:21884973, PMID:21884969, PMID:22353866, PMID:22315425, PMID:22311777, PMID:22408072, PMID:22395476, PMID:22715042, PMID:22672153, PMID:22899064, PMID:22878891, PMID:23006446, PMID:22995285, PMID:23107921, PMID:23144785, PMID:23128602, PMID:23307650, PMID:23511208, PMID:23555221, PMID:23645632, PMID:23777196, PMID:23754942, PMID:23506153, PMID:23933882, PMID:23830866, PMID:24377444, PMID:24484962, PMID:24792048, PMID:25264899, locus:2200970; locus_type=protein_coding
AT1G01060.5	chr1:000033992	0.0	C/33992-34327,34401-35474,35567-35647,35730-35999,36090-36171,36624-36685,36810-36836	AT1G01060.5 CDS AT1G01060 ID=AT1G01060.5; Parent=AT1G01060; Name=AT1G01060.5; Note=Homeodomain-like superfamily protein; curator_summary=LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1; conf_class=6; symbol=LHY; Alias=LHY1, LATE ELONGATED HYPOCOTYL 1; full_name=LATE ELONGATED HYPOCOTYL; computational_description=LATE ELONGATED HYPOCOTYL (LHY)%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%2C Myb-like DNA-binding domain%2C SHAQKYF class (InterPro:IPR006447)%3B BEST Arabidopsis thaliana protein match is: circadian clock associated 1 (TAIR:AT2G46830.1)%3B Has 2469 Blast hits to 2022 proteins in 280 species: Archae - 2%3B Bacteria - 257%3B Metazoa - 292%3B Fungi - 162%3B Plants - 1048%3B Viruses - 29%3B Other Eukaryotes - 679 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:10645431, PMID:10535927, PMID:10477524, PMID:10469647, PMID:10097183, PMID:10023572, PMID:9657154, PMID:9657153, PMID:11118137, PMID:11158533, PMID:11486091, PMID:11402160, PMID:12015970, PMID:12007421, PMID:12068102, PMID:12096093, PMID:11828023, PMID:12198185, PMID:12461138, PMID:12509533, PMID:12574129, PMID:12668783, PMID:12777053, PMID:14563930, PMID:14558659, PMID:14523250, PMID:14634162, PMID:14741378, PMID:15310821, PMID:15649364, PMID:15734916, PMID:15767265, PMID:15923346, PMID:16006578, PMID:16212608, PMID:16463103, PMID:16524874, PMID:16617099, PMID:17132630, PMID:17122071, PMID:17098855, PMID:17363273, PMID:17468223, PMID:17519251, PMID:17504813, PMID:17496120, PMID:17483414, PMID:17587236, PMID:17540692, PMID:17616736, PMID:17877705, PMID:17982000, PMID:18182014, PMID:18178585, PMID:18281507, PMID:18281417, PMID:18480377, PMID:18650403, PMID:18707796, PMID:18676661, PMID:19011118, PMID:19098071, PMID:19095940, PMID:19060255, PMID:19218364, PMID:19297549, PMID:19286557, PMID:19339503, PMID:19542296, PMID:15725674, PMID:15988568, PMID:16729048, PMID:16709197, PMID:17102804, PMID:18460819, PMID:19029881, PMID:19140936, PMID:19383102, PMID:19380736, PMID:19624471, PMID:19843842, PMID:19820331, PMID:19805390, PMID:19789276, PMID:20154425, PMID:20119844, PMID:20335405, PMID:20233950, PMID:20354196, PMID:20439704, PMID:20433765, PMID:20599732, PMID:20736450, PMID:21098730, PMID:21183706, PMID:21139085, PMID:21205033, PMID:21196476, PMID:21236675, PMID:21331777, PMID:21296763, PMID:21447790, PMID:21454289, PMID:21499259, PMID:21483796, PMID:21471455, PMID:21848684, PMID:21822060, PMID:21884973, PMID:21884969, PMID:22353866, PMID:22315425, PMID:22311777, PMID:22408072, PMID:22395476, PMID:22715042, PMID:22672153, PMID:22899064, PMID:22878891, PMID:23006446, PMID:22995285, PMID:23107921, PMID:23144785, PMID:23128602, PMID:23307650, PMID:23511208, PMID:23555221, PMID:23645632, PMID:23777196, PMID:23754942, PMID:23506153, PMID:23933882, PMID:23830866, PMID:24377444, PMID:24484962, PMID:24792048, PMID:25264899, locus:2200970; locus_type=protein_coding
AT1G01060.6	chr1:000033992	0.0	C/33992-34327,34401-35474,35567-35647,35730-35999,36090-36171,36624-36685,36810-36836	AT1G01060.6 CDS AT1G01060 ID=AT1G01060.6; Parent=AT1G01060; Name=AT1G01060.6; Note=Homeodomain-like superfamily protein; symbol=LHY; Alias=LHY1, LATE ELONGATED HYPOCOTYL 1; full_name=LATE ELONGATED HYPOCOTYL; Dbxref=PMID:10645431, PMID:10535927, PMID:10477524, PMID:10469647, PMID:10097183, PMID:10023572, PMID:9657154, PMID:9657153, PMID:11118137, PMID:11158533, PMID:11486091, PMID:11402160, PMID:12015970, PMID:12007421, PMID:12068102, PMID:12096093, PMID:11828023, PMID:12198185, PMID:12461138, PMID:12509533, PMID:12574129, PMID:12668783, PMID:12777053, PMID:14563930, PMID:14558659, PMID:14523250, PMID:14634162, PMID:14741378, PMID:15310821, PMID:15649364, PMID:15734916, PMID:15767265, PMID:15923346, PMID:16006578, PMID:16212608, PMID:16463103, PMID:16524874, PMID:16617099, PMID:17132630, PMID:17122071, PMID:17098855, PMID:17363273, PMID:17468223, PMID:17519251, PMID:17504813, PMID:17496120, PMID:17483414, PMID:17587236, PMID:17540692, PMID:17616736, PMID:17877705, PMID:17982000, PMID:18182014, PMID:18178585, PMID:18281507, PMID:18281417, PMID:18480377, PMID:18650403, PMID:18707796, PMID:18676661, PMID:19011118, PMID:19098071, PMID:19095940, PMID:19060255, PMID:19218364, PMID:19297549, PMID:19286557, PMID:19339503, PMID:19542296, PMID:15725674, PMID:15988568, PMID:16729048, PMID:16709197, PMID:17102804, PMID:18460819, PMID:19029881, PMID:19140936, PMID:19383102, PMID:19380736, PMID:19624471, PMID:19843842, PMID:19820331, PMID:19805390, PMID:19789276, PMID:20154425, PMID:20119844, PMID:20335405, PMID:20233950, PMID:20354196, PMID:20439704, PMID:20433765, PMID:20599732, PMID:20736450, PMID:21098730, PMID:21183706, PMID:21139085, PMID:21205033, PMID:21196476, PMID:21236675, PMID:21331777, PMID:21296763, PMID:21447790, PMID:21454289, PMID:21499259, PMID:21483796, PMID:21471455, PMID:21848684, PMID:21822060, PMID:21884973, PMID:21884969, PMID:22353866, PMID:22315425, PMID:22311777, PMID:22408072, PMID:22395476, PMID:22715042, PMID:22672153, PMID:22899064, PMID:22878891, PMID:23006446, PMID:22995285, PMID:23107921, PMID:23144785, PMID:23128602, PMID:23307650, PMID:23511208, PMID:23555221, PMID:23645632, PMID:23777196, PMID:23754942, PMID:23506153, PMID:23933882, PMID:23830866, PMID:24377444, PMID:24484962, PMID:24792048, PMID:25264899, locus:2200970; curator_summary=LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1; computational_description=LATE ELONGATED HYPOCOTYL (LHY)%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%2C Myb-like DNA-binding domain%2C SHAQKYF class (InterPro:IPR006447)%3B BEST Arabidopsis thaliana protein match is: circadian clock associated 1 (TAIR:AT2G46830.1)%3B Has 2469 Blast hits to 2022 proteins in 280 species: Archae - 2%3B Bacteria - 257%3B Metazoa - 292%3B Fungi - 162%3B Plants - 1048%3B Viruses - 29%3B Other Eukaryotes - 679 (source: NCBI BLink).; locus_type=protein_coding
AT1G01060.7	chr1:000033992	0.0	C/33992-34327,34401-35474,35567-35647,35730-35963,36624-36685,36810-36921,37023-37061	AT1G01060.7 CDS AT1G01060 ID=AT1G01060.7; Parent=AT1G01060; Name=AT1G01060.7; Note=Homeodomain-like superfamily protein; symbol=LHY; Alias=LHY1, LATE ELONGATED HYPOCOTYL 1; full_name=LATE ELONGATED HYPOCOTYL; Dbxref=PMID:10645431, PMID:10535927, PMID:10477524, PMID:10469647, PMID:10097183, PMID:10023572, PMID:9657154, PMID:9657153, PMID:11118137, PMID:11158533, PMID:11486091, PMID:11402160, PMID:12015970, PMID:12007421, PMID:12068102, PMID:12096093, PMID:11828023, PMID:12198185, PMID:12461138, PMID:12509533, PMID:12574129, PMID:12668783, PMID:12777053, PMID:14563930, PMID:14558659, PMID:14523250, PMID:14634162, PMID:14741378, PMID:15310821, PMID:15649364, PMID:15734916, PMID:15767265, PMID:15923346, PMID:16006578, PMID:16212608, PMID:16463103, PMID:16524874, PMID:16617099, PMID:17132630, PMID:17122071, PMID:17098855, PMID:17363273, PMID:17468223, PMID:17519251, PMID:17504813, PMID:17496120, PMID:17483414, PMID:17587236, PMID:17540692, PMID:17616736, PMID:17877705, PMID:17982000, PMID:18182014, PMID:18178585, PMID:18281507, PMID:18281417, PMID:18480377, PMID:18650403, PMID:18707796, PMID:18676661, PMID:19011118, PMID:19098071, PMID:19095940, PMID:19060255, PMID:19218364, PMID:19297549, PMID:19286557, PMID:19339503, PMID:19542296, PMID:15725674, PMID:15988568, PMID:16729048, PMID:16709197, PMID:17102804, PMID:18460819, PMID:19029881, PMID:19140936, PMID:19383102, PMID:19380736, PMID:19624471, PMID:19843842, PMID:19820331, PMID:19805390, PMID:19789276, PMID:20154425, PMID:20119844, PMID:20335405, PMID:20233950, PMID:20354196, PMID:20439704, PMID:20433765, PMID:20599732, PMID:20736450, PMID:21098730, PMID:21183706, PMID:21139085, PMID:21205033, PMID:21196476, PMID:21236675, PMID:21331777, PMID:21296763, PMID:21447790, PMID:21454289, PMID:21499259, PMID:21483796, PMID:21471455, PMID:21848684, PMID:21822060, PMID:21884973, PMID:21884969, PMID:22353866, PMID:22315425, PMID:22311777, PMID:22408072, PMID:22395476, PMID:22715042, PMID:22672153, PMID:22899064, PMID:22878891, PMID:23006446, PMID:22995285, PMID:23107921, PMID:23144785, PMID:23128602, PMID:23307650, PMID:23511208, PMID:23555221, PMID:23645632, PMID:23777196, PMID:23754942, PMID:23506153, PMID:23933882, PMID:23830866, PMID:24377444, PMID:24484962, PMID:24792048, PMID:25264899, locus:2200970; curator_summary=LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1; computational_description=LATE ELONGATED HYPOCOTYL (LHY)%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%2C Myb-like DNA-binding domain%2C SHAQKYF class (InterPro:IPR006447)%3B BEST Arabidopsis thaliana protein match is: circadian clock associated 1 (TAIR:AT2G46830.1)%3B Has 2469 Blast hits to 2022 proteins in 280 species: Archae - 2%3B Bacteria - 257%3B Metazoa - 292%3B Fungi - 162%3B Plants - 1048%3B Viruses - 29%3B Other Eukaryotes - 679 (source: NCBI BLink).; locus_type=protein_coding
AT1G01060.8	chr1:000033992	0.0	C/33992-34327,34401-35474,35567-35647,35730-35963,36624-36685,36810-36921,37023-37061	AT1G01060.8 CDS AT1G01060 ID=AT1G01060.8; Parent=AT1G01060; Name=AT1G01060.8; Note=Homeodomain-like superfamily protein; symbol=LHY; Alias=LHY1, LATE ELONGATED HYPOCOTYL 1; full_name=LATE ELONGATED HYPOCOTYL; Dbxref=PMID:10645431, PMID:10535927, PMID:10477524, PMID:10469647, PMID:10097183, PMID:10023572, PMID:9657154, PMID:9657153, PMID:11118137, PMID:11158533, PMID:11486091, PMID:11402160, PMID:12015970, PMID:12007421, PMID:12068102, PMID:12096093, PMID:11828023, PMID:12198185, PMID:12461138, PMID:12509533, PMID:12574129, PMID:12668783, PMID:12777053, PMID:14563930, PMID:14558659, PMID:14523250, PMID:14634162, PMID:14741378, PMID:15310821, PMID:15649364, PMID:15734916, PMID:15767265, PMID:15923346, PMID:16006578, PMID:16212608, PMID:16463103, PMID:16524874, PMID:16617099, PMID:17132630, PMID:17122071, PMID:17098855, PMID:17363273, PMID:17468223, PMID:17519251, PMID:17504813, PMID:17496120, PMID:17483414, PMID:17587236, PMID:17540692, PMID:17616736, PMID:17877705, PMID:17982000, PMID:18182014, PMID:18178585, PMID:18281507, PMID:18281417, PMID:18480377, PMID:18650403, PMID:18707796, PMID:18676661, PMID:19011118, PMID:19098071, PMID:19095940, PMID:19060255, PMID:19218364, PMID:19297549, PMID:19286557, PMID:19339503, PMID:19542296, PMID:15725674, PMID:15988568, PMID:16729048, PMID:16709197, PMID:17102804, PMID:18460819, PMID:19029881, PMID:19140936, PMID:19383102, PMID:19380736, PMID:19624471, PMID:19843842, PMID:19820331, PMID:19805390, PMID:19789276, PMID:20154425, PMID:20119844, PMID:20335405, PMID:20233950, PMID:20354196, PMID:20439704, PMID:20433765, PMID:20599732, PMID:20736450, PMID:21098730, PMID:21183706, PMID:21139085, PMID:21205033, PMID:21196476, PMID:21236675, PMID:21331777, PMID:21296763, PMID:21447790, PMID:21454289, PMID:21499259, PMID:21483796, PMID:21471455, PMID:21848684, PMID:21822060, PMID:21884973, PMID:21884969, PMID:22353866, PMID:22315425, PMID:22311777, PMID:22408072, PMID:22395476, PMID:22715042, PMID:22672153, PMID:22899064, PMID:22878891, PMID:23006446, PMID:22995285, PMID:23107921, PMID:23144785, PMID:23128602, PMID:23307650, PMID:23511208, PMID:23555221, PMID:23645632, PMID:23777196, PMID:23754942, PMID:23506153, PMID:23933882, PMID:23830866, PMID:24377444, PMID:24484962, PMID:24792048, PMID:25264899, locus:2200970; curator_summary=LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1; computational_description=LATE ELONGATED HYPOCOTYL (LHY)%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%2C Myb-like DNA-binding domain%2C SHAQKYF class (InterPro:IPR006447)%3B BEST Arabidopsis thaliana protein match is: circadian clock associated 1 (TAIR:AT2G46830.1)%3B Has 2469 Blast hits to 2022 proteins in 280 species: Archae - 2%3B Bacteria - 257%3B Metazoa - 292%3B Fungi - 162%3B Plants - 1048%3B Viruses - 29%3B Other Eukaryotes - 679 (source: NCBI BLink).; locus_type=protein_coding
AT1G01070.1	chr1:000038898	0.0	C/38898-39054,39136-39287,39409-39814,40213-40329,40473-40535,40675-40877	AT1G01070.1 CDS AT1G01070 ID=AT1G01070.1; Parent=AT1G01070; Name=AT1G01070.1; Note=nodulin MtN21 /EamA-like transporter family protein; curator_summary=nodulin MtN21-like transporter family protein; conf_class=2; symbol=UMAMIT28; full_name=Usually multiple acids move in and out Transporters 28; computational_description=nodulin MtN21 /EamA-like transporter family protein%3B LOCATED IN: membrane%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6%2C transmembrane (InterPro:IPR000620)%3B BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT1G11460.1)%3B Has 3211 Blast hits to 3199 proteins in 599 species: Archae - 23%3B Bacteria - 1686%3B Metazoa - 4%3B Fungi - 6%3B Plants - 1233%3B Viruses - 0%3B Other Eukaryotes - 259 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15703057, locus:2200990; locus_type=protein_coding
AT1G01070.2	chr1:000038898	0.0	C/38898-39054,39136-39287,39409-39814,40213-40329,40473-40597	AT1G01070.2 CDS AT1G01070 ID=AT1G01070.2; Parent=AT1G01070; Name=AT1G01070.2; Note=nodulin MtN21 /EamA-like transporter family protein; curator_summary=nodulin MtN21-like transporter family protein; conf_class=1; symbol=UMAMIT28; full_name=Usually multiple acids move in and out Transporters 28; computational_description=nodulin MtN21 /EamA-like transporter family protein%3B LOCATED IN: membrane%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6%2C transmembrane (InterPro:IPR000620)%3B BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT1G11460.1)%3B Has 3211 Blast hits to 3199 proteins in 599 species: Archae - 23%3B Bacteria - 1686%3B Metazoa - 4%3B Fungi - 6%3B Plants - 1233%3B Viruses - 0%3B Other Eukaryotes - 259 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15703057, locus:2200990; locus_type=protein_coding
AT1G04003.1	chr1:000043087	0.0	C/43087-43295	AT1G04003.1 lnc_RNA AT1G04003 ID=AT1G04003.1; Parent=AT1G04003; Name=AT1G04003.1; locus_type=long_noncoding_rna
AT1G01080.1	chr1:000045503	0.0	C/45503-45559,45646-45954,46044-46145,46376-46789	AT1G01080.1 CDS AT1G01080 ID=AT1G01080.1; Parent=AT1G01080; Name=AT1G01080.1; Note=RNA-binding (RRM/RBD/RNP motifs) family protein; conf_class=2; computational_description=RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast stroma%2C nucleus%2C chloroplast%2C chloroplast envelope%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G60000.1)%3B Has 509067 Blast hits to 499893 proteins in 22124 species: Archae - 10819%3B Bacteria - 303967%3B Metazoa - 99035%3B Fungi - 14863%3B Plants - 31737%3B Viruses - 35534%3B Other Eukaryotes - 13112 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:15703057, PMID:18650403, locus:2200975; locus_type=protein_coding
AT1G01080.2	chr1:000045503	0.0	C/45503-45559,45646-45954,46044-46145,46373-46789	AT1G01080.2 CDS AT1G01080 ID=AT1G01080.2; Parent=AT1G01080; Name=AT1G01080.2; Note=RNA-binding (RRM/RBD/RNP motifs) family protein; conf_class=2; computational_description=RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast stroma%2C nucleus%2C chloroplast%2C chloroplast envelope%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G60000.1)%3B Has 509067 Blast hits to 499893 proteins in 22124 species: Archae - 10819%3B Bacteria - 303967%3B Metazoa - 99035%3B Fungi - 14863%3B Plants - 31737%3B Viruses - 35534%3B Other Eukaryotes - 13112 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:15703057, PMID:18650403, locus:2200975; locus_type=protein_coding
AT1G01080.3	chr1:000045610	0.0	C/45610-45954,46044-46145,46376-46789	AT1G01080.3 CDS AT1G01080 ID=AT1G01080.3; Parent=AT1G01080; Name=AT1G01080.3; Note=RNA-binding (RRM/RBD/RNP motifs) family protein; computational_description=RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast stroma%2C nucleus%2C chloroplast%2C chloroplast envelope%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G60000.1)%3B Has 509067 Blast hits to 499893 proteins in 22124 species: Archae - 10819%3B Bacteria - 303967%3B Metazoa - 99035%3B Fungi - 14863%3B Plants - 31737%3B Viruses - 35534%3B Other Eukaryotes - 13112 (source: NCBI BLink).; Dbxref=PMID:14576160, PMID:15703057, PMID:18650403, locus:2200975; locus_type=protein_coding
AT1G01090.1	chr1:000047705	0.0	C/47705-47982,48075-48852,48936-49166	AT1G01090.1 CDS AT1G01090 ID=AT1G01090.1; Parent=AT1G01090; Name=AT1G01090.1; Note=pyruvate dehydrogenase E1 alpha; curator_summary=pyruvate dehydrogenase E1 alpha subunit; conf_class=2; symbol=PDH-E1 ALPHA; full_name=pyruvate dehydrogenase E1 alpha; computational_description=pyruvate dehydrogenase E1 alpha (PDH-E1 ALPHA)%3B FUNCTIONS IN: pyruvate dehydrogenase (acetyl-transferring) activity%3B INVOLVED IN: oxidation reduction%2C glycolysis%2C metabolic process%3B LOCATED IN: chloroplast%2C plastid%2C chloroplast envelope%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Dehydrogenase%2C E1 component (InterPro:IPR001017)%2C Pyruvate dehydrogenase (acetyl-transferring) E1 component%2C alpha subunit%2C subgroup y (InterPro:IPR017597)%3B BEST Arabidopsis thaliana protein match is: pyruvate dehydrogenase complex E1 alpha subunit (TAIR:AT1G59900.1)%3B Has 10065 Blast hits to 10059 proteins in 1888 species: Archae - 130%3B Bacteria - 6136%3B Metazoa - 517%3B Fungi - 241%3B Plants - 224%3B Viruses - 0%3B Other Eukaryotes - 2817 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9393637, PMID:12084821, PMID:12805597, PMID:13677473, PMID:14576160, PMID:14682612, PMID:15052571, PMID:15173569, PMID:15561727, PMID:15703057, PMID:16553896, PMID:17419836, PMID:18650403, PMID:18616834, PMID:18689444, PMID:18775970, PMID:23505340, PMID:24023856, locus:2200980; locus_type=protein_coding
AT1G01100.1	chr1:000050284	0.0	C/50284-50337,50419-50631,50883-50954	AT1G01100.1 CDS AT1G01100 ID=AT1G01100.1; Parent=AT1G01100; Name=AT1G01100.1; Note=60S acidic ribosomal protein family; conf_class=2; computational_description=60S acidic ribosomal protein family%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translational elongation%3B LOCATED IN: cytosol%2C cytosolic ribosome%2C ribosome%2C nucleus%2C plasma membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813)%3B BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT5G47700.2)%3B Has 2175 Blast hits to 2175 proteins in 383 species: Archae - 76%3B Bacteria - 0%3B Metazoa - 858%3B Fungi - 474%3B Plants - 451%3B Viruses - 0%3B Other Eukaryotes - 316 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11598216, PMID:12093376, PMID:14730065, PMID:15010618, PMID:15734919, PMID:15703057, PMID:17934214, PMID:18433157, PMID:18775970, PMID:22195043, locus:2200985; locus_type=protein_coding
AT1G01100.2	chr1:000050284	0.0	C/50284-50337,50419-50631,50883-50954	AT1G01100.2 CDS AT1G01100 ID=AT1G01100.2; Parent=AT1G01100; Name=AT1G01100.2; Note=60S acidic ribosomal protein family; conf_class=2; computational_description=60S acidic ribosomal protein family%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translational elongation%3B LOCATED IN: cytosol%2C cytosolic ribosome%2C ribosome%2C nucleus%2C plasma membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813)%3B BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT5G47700.2)%3B Has 2175 Blast hits to 2175 proteins in 383 species: Archae - 76%3B Bacteria - 0%3B Metazoa - 858%3B Fungi - 474%3B Plants - 451%3B Viruses - 0%3B Other Eukaryotes - 316 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11598216, PMID:12093376, PMID:14730065, PMID:15010618, PMID:15734919, PMID:15703057, PMID:17934214, PMID:18433157, PMID:18775970, PMID:22195043, locus:2200985; locus_type=protein_coding
AT1G01100.3	chr1:000050284	0.0	C/50284-50337,50419-50447,50496-50631,50883-50954	AT1G01100.3 CDS AT1G01100 ID=AT1G01100.3; Parent=AT1G01100; Name=AT1G01100.3; Note=60S acidic ribosomal protein family; conf_class=2; computational_description=60S acidic ribosomal protein family%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translational elongation%3B LOCATED IN: cytosol%2C cytosolic ribosome%2C ribosome%2C nucleus%2C plasma membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813)%3B BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT5G47700.2)%3B Has 2175 Blast hits to 2175 proteins in 383 species: Archae - 76%3B Bacteria - 0%3B Metazoa - 858%3B Fungi - 474%3B Plants - 451%3B Viruses - 0%3B Other Eukaryotes - 316 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11598216, PMID:12093376, PMID:14730065, PMID:15010618, PMID:15734919, PMID:15703057, PMID:17934214, PMID:18433157, PMID:18775970, PMID:22195043, locus:2200985; locus_type=protein_coding
AT1G01100.4	chr1:000050284	0.0	C/50284-50337,50419-50631,50883-50954	AT1G01100.4 CDS AT1G01100 ID=AT1G01100.4; Parent=AT1G01100; Name=AT1G01100.4; Note=60S acidic ribosomal protein family; conf_class=2; computational_description=60S acidic ribosomal protein family%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translational elongation%3B LOCATED IN: cytosol%2C cytosolic ribosome%2C ribosome%2C nucleus%2C plasma membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813)%3B BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT5G47700.2)%3B Has 2175 Blast hits to 2175 proteins in 383 species: Archae - 76%3B Bacteria - 0%3B Metazoa - 858%3B Fungi - 474%3B Plants - 451%3B Viruses - 0%3B Other Eukaryotes - 316 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11598216, PMID:12093376, PMID:14730065, PMID:15010618, PMID:15734919, PMID:15703057, PMID:17934214, PMID:18433157, PMID:18775970, PMID:22195043, locus:2200985; locus_type=protein_coding
AT1G01110.2	chr1:000052239	0.0	W/52239-52346,52434-52730,52938-53183,53484-53624,53703-54494	AT1G01110.2 CDS AT1G01110 ID=AT1G01110.2; Parent=AT1G01110; Name=AT1G01110.2; Note=IQ-domain 18; conf_class=2; symbol=IQD18; full_name=IQ-domain 18; computational_description=IQ-domain 18 (IQD18)%3B FUNCTIONS IN: molecular_function unknown%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 10 plant structures%3B EXPRESSED DURING: 6 growth stages%3B BEST Arabidopsis thaliana protein match is: IQ-domain 17 (TAIR:AT4G00820.1)%3B Has 1112 Blast hits to 678 proteins in 50 species: Archae - 0%3B Bacteria - 10%3B Metazoa - 109%3B Fungi - 16%3B Plants - 528%3B Viruses - 4%3B Other Eukaryotes - 445 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15703057, PMID:16368012, PMID:17551672, locus:2200945; locus_type=protein_coding
AT1G01110.1	chr1:000053022	0.0	W/53022-53183,53484-53624,53703-54494	AT1G01110.1 CDS AT1G01110 ID=AT1G01110.1; Parent=AT1G01110; Name=AT1G01110.1; Note=IQ-domain 18; conf_class=1; symbol=IQD18; full_name=IQ-domain 18; computational_description=IQ-domain 18 (IQD18)%3B FUNCTIONS IN: molecular_function unknown%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 10 plant structures%3B EXPRESSED DURING: 6 growth stages%3B BEST Arabidopsis thaliana protein match is: IQ-domain 17 (TAIR:AT4G00820.1)%3B Has 1112 Blast hits to 678 proteins in 50 species: Archae - 0%3B Bacteria - 10%3B Metazoa - 109%3B Fungi - 16%3B Plants - 528%3B Viruses - 4%3B Other Eukaryotes - 445 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15703057, PMID:16368012, PMID:17551672, locus:2200945; locus_type=protein_coding
AT1TE00150	chr1:000055676	0.0	W/55676-55873,55874-56576	AT1TE00150 transposable_element AT1TE00150 ID=AT1TE00150; Name=AT1TE00150; Alias=SIMPLEHAT1
AT1G01120.1	chr1:000057392	0.0	C/57392-58978	AT1G01120.1 CDS AT1G01120 ID=AT1G01120.1; Parent=AT1G01120; Name=AT1G01120.1; Note=3-ketoacyl-CoA synthase 1; curator_summary=Encodes a condensing enzyme KCS1 (3-ketoacyl-CoA synthase 1) which is involved in the critical fatty acid elongation process in wax biosynthesis.; conf_class=1; symbol=KCS1; full_name=3-ketoacyl-CoA synthase 1; computational_description=3-ketoacyl-CoA synthase 1 (KCS1)%3B FUNCTIONS IN: fatty acid elongase activity%2C acyltransferase activity%3B INVOLVED IN: in 7 processes%3B LOCATED IN: cytosolic ribosome%2C endoplasmic reticulum%2C membrane%3B EXPRESSED IN: 29 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039)%2C Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392)%2C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747)%2C FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601)%2C Thiolase-like%2C subgroup (InterPro:IPR016038)%3B BEST Arabidopsis thaliana protein match is: 3-ketoacyl-CoA synthase 11 (TAIR:AT2G26640.1)%3B Has 3961 Blast hits to 3946 proteins in 966 species: Archae - 0%3B Bacteria - 1388%3B Metazoa - 0%3B Fungi - 5%3B Plants - 2408%3B Viruses - 0%3B Other Eukaryotes - 160 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:10074711, PMID:11341960, PMID:12753585, PMID:15070782, PMID:18465198, PMID:18650403, PMID:20736450, PMID:22284369, PMID:23505340, locus:2200955; locus_type=protein_coding
AT1G01130.1	chr1:000061905	0.0	C/61905-61949,62050-62124,63557-63811	AT1G01130.1 CDS AT1G01130 ID=AT1G01130.1; Parent=AT1G01130; Name=AT1G01130.1; Note=CBL-interacting Serine/Threonine-kinase; conf_class=3; computational_description=CONTAINS InterPro DOMAIN/s: CBL-interacting protein kinase (InterPro:IPR020660)%2C Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636)%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47170.1)%3B Has 176 Blast hits to 176 proteins in 20 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 176%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15703057, PMID:20226671, locus:2035357; locus_type=protein_coding
AT1G01140.1	chr1:000064398	0.0	C/64398-64475,64582-64656,64751-64807,64901-65017,65110-65217,65331-65456,65563-65652,65739-65864,66107-66160,66262-66342,66450-66557,66678-66749,66835-66897,67324-67512	AT1G01140.1 CDS AT1G01140 ID=AT1G01140.1; Parent=AT1G01140; Name=AT1G01140.1; Note=CBL-interacting protein kinase 9; curator_summary=Encodes a CBL-interacting protein kinase with similarity to SOS2; conf_class=2; symbol=CIPK9; Alias=PKS6, PROTEIN KINASE 6, SnRK3.12, SNF1-RELATED PROTEIN KINASE 3.12; full_name=CBL-interacting protein kinase 9; computational_description=CBL-interacting protein kinase 9 (CIPK9)%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: in 6 processes%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C NAF/FISL domain (InterPro:IPR018451)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C CBL-interacting protein kinase (InterPro:IPR020660)%2C NAF domain (InterPro:IPR004041)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%3B BEST Arabidopsis thaliana protein match is: CBL-interacting protein kinase 23 (TAIR:AT1G30270.1)%3B Has 130203 Blast hits to 128118 proteins in 4349 species: Archae - 165%3B Bacteria - 15262%3B Metazoa - 47961%3B Fungi - 13206%3B Plants - 31482%3B Viruses - 522%3B Other Eukaryotes - 21605 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11230129, PMID:12805596, PMID:12045290, PMID:14730064, PMID:15574398, PMID:15703057, PMID:16146321, PMID:16214899, PMID:16673935, PMID:17397506, PMID:17551672, PMID:18650403, PMID:18775970, PMID:17486125, PMID:20870959, PMID:21477822, PMID:23109687, PMID:25614064, PMID:25646412, locus:2035367; locus_type=protein_coding
AT1G01140.2	chr1:000064398	0.0	C/64398-64475,64582-64656,64751-64807,64901-65017,65110-65217,65331-65456,65563-65652,65733-65864,66107-66160,66262-66342,66450-66557,66678-66749,66835-66897,67324-67512	AT1G01140.2 CDS AT1G01140 ID=AT1G01140.2; Parent=AT1G01140; Name=AT1G01140.2; Note=CBL-interacting protein kinase 9; curator_summary=Encodes a CBL-interacting protein kinase with similarity to SOS2; conf_class=3; symbol=CIPK9; Alias=PKS6, PROTEIN KINASE 6, SnRK3.12, SNF1-RELATED PROTEIN KINASE 3.12; full_name=CBL-interacting protein kinase 9; computational_description=CBL-interacting protein kinase 9 (CIPK9)%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: in 6 processes%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C NAF/FISL domain (InterPro:IPR018451)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C CBL-interacting protein kinase (InterPro:IPR020660)%2C NAF domain (InterPro:IPR004041)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%3B BEST Arabidopsis thaliana protein match is: CBL-interacting protein kinase 23 (TAIR:AT1G30270.1)%3B Has 130203 Blast hits to 128118 proteins in 4349 species: Archae - 165%3B Bacteria - 15262%3B Metazoa - 47961%3B Fungi - 13206%3B Plants - 31482%3B Viruses - 522%3B Other Eukaryotes - 21605 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11230129, PMID:12805596, PMID:12045290, PMID:14730064, PMID:15574398, PMID:15703057, PMID:16146321, PMID:16214899, PMID:16673935, PMID:17397506, PMID:17551672, PMID:18650403, PMID:18775970, PMID:17486125, PMID:20870959, PMID:21477822, PMID:23109687, PMID:25614064, PMID:25646412, locus:2035367; locus_type=protein_coding
AT1G01140.3	chr1:000064398	0.0	C/64398-64475,64570-64656,64751-64807,64901-65017,65110-65217,65331-65456,65563-65652,65739-65864,66107-66160,66262-66342,66450-66557,66678-66749,66835-66897,67324-67512	AT1G01140.3 CDS AT1G01140 ID=AT1G01140.3; Parent=AT1G01140; Name=AT1G01140.3; Note=CBL-interacting protein kinase 9; curator_summary=Encodes a CBL-interacting protein kinase with similarity to SOS2; conf_class=2; symbol=CIPK9; Alias=PKS6, PROTEIN KINASE 6, SnRK3.12, SNF1-RELATED PROTEIN KINASE 3.12; full_name=CBL-interacting protein kinase 9; computational_description=CBL-interacting protein kinase 9 (CIPK9)%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: in 6 processes%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C NAF/FISL domain (InterPro:IPR018451)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C CBL-interacting protein kinase (InterPro:IPR020660)%2C NAF domain (InterPro:IPR004041)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%3B BEST Arabidopsis thaliana protein match is: CBL-interacting protein kinase 23 (TAIR:AT1G30270.1)%3B Has 130203 Blast hits to 128118 proteins in 4349 species: Archae - 165%3B Bacteria - 15262%3B Metazoa - 47961%3B Fungi - 13206%3B Plants - 31482%3B Viruses - 522%3B Other Eukaryotes - 21605 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11230129, PMID:12805596, PMID:12045290, PMID:14730064, PMID:15574398, PMID:15703057, PMID:16146321, PMID:16214899, PMID:16673935, PMID:17397506, PMID:17551672, PMID:18650403, PMID:18775970, PMID:17486125, PMID:20870959, PMID:21477822, PMID:23109687, PMID:25614064, PMID:25646412, locus:2035367; locus_type=protein_coding
AT1G01150.1	chr1:000070115	0.0	C/70115-70285,70840-70968,71041-71721,71942-71998	AT1G01150.1 CDS AT1G01150 ID=AT1G01150.1; Parent=AT1G01150; Name=AT1G01150.1; Note=Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain-containing protein; conf_class=6; computational_description=Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain%3B FUNCTIONS IN: DNA binding%2C zinc ion binding%3B INVOLVED IN: regulation of transcription%3B EXPRESSED IN: 8 plant structures%3B EXPRESSED DURING: 4 anthesis%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057)%2C Zinc finger%2C PHD-type%2C conserved site (InterPro:IPR019786)%2C Zinc finger%2C FYVE/PHD-type (InterPro:IPR011011)%2C Homeodomain-related (InterPro:IPR012287)%2C MYB-like (InterPro:IPR017877)%3B BEST Arabidopsis thaliana protein match is: TRF-like 10 (TAIR:AT5G03780.1)%3B Has 94 Blast hits to 77 proteins in 18 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 5%3B Fungi - 0%3B Plants - 86%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:15703057, PMID:16481336, locus:2035372; locus_type=protein_coding
AT1G01150.2	chr1:000070115	0.0	C/70115-70233,70896-70968,71041-71721,71942-71998	AT1G01150.2 CDS AT1G01150 ID=AT1G01150.2; Parent=AT1G01150; Name=AT1G01150.2; Note=Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain-containing protein; computational_description=Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain%3B FUNCTIONS IN: DNA binding%2C zinc ion binding%3B INVOLVED IN: regulation of transcription%3B EXPRESSED IN: 8 plant structures%3B EXPRESSED DURING: 4 anthesis%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057)%2C Zinc finger%2C PHD-type%2C conserved site (InterPro:IPR019786)%2C Zinc finger%2C FYVE/PHD-type (InterPro:IPR011011)%2C Homeodomain-related (InterPro:IPR012287)%2C MYB-like (InterPro:IPR017877)%3B BEST Arabidopsis thaliana protein match is: TRF-like 10 (TAIR:AT5G03780.1)%3B Has 94 Blast hits to 77 proteins in 18 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 5%3B Fungi - 0%3B Plants - 86%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).; Dbxref=PMID:15703057, PMID:16481336, locus:2035372; locus_type=protein_coding
AT1G01150.3	chr1:000070828	0.0	C/70828-70968,71041-71721,71942-71998	AT1G01150.3 CDS AT1G01150 ID=AT1G01150.3; Parent=AT1G01150; Name=AT1G01150.3; Note=Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain-containing protein; computational_description=Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain%3B FUNCTIONS IN: DNA binding%2C zinc ion binding%3B INVOLVED IN: regulation of transcription%3B EXPRESSED IN: 8 plant structures%3B EXPRESSED DURING: 4 anthesis%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057)%2C Zinc finger%2C PHD-type%2C conserved site (InterPro:IPR019786)%2C Zinc finger%2C FYVE/PHD-type (InterPro:IPR011011)%2C Homeodomain-related (InterPro:IPR012287)%2C MYB-like (InterPro:IPR017877)%3B BEST Arabidopsis thaliana protein match is: TRF-like 10 (TAIR:AT5G03780.1)%3B Has 94 Blast hits to 77 proteins in 18 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 5%3B Fungi - 0%3B Plants - 86%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).; Dbxref=PMID:15703057, PMID:16481336, locus:2035372; locus_type=protein_coding
AT1G01160.1	chr1:000072583	0.0	W/72583-72669,73087-73163,73287-73395,73488-73740,73822-73883	AT1G01160.1 CDS AT1G01160 ID=AT1G01160.1; Parent=AT1G01160; Name=AT1G01160.1; Note=GRF1-interacting factor 2; curator_summary=Arabidopsis thaliana GRF1-interacting factor 2 (GIF2) mRNA; conf_class=2; symbol=GIF2; full_name=GRF1-interacting factor 2; computational_description=GRF1-interacting factor 2 (GIF2)%3B CONTAINS InterPro DOMAIN/s: SSXT (InterPro:IPR007726)%3B BEST Arabidopsis thaliana protein match is: GRF1-interacting factor 3 (TAIR:AT4G00850.1)%3B Has 425 Blast hits to 425 proteins in 91 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 291%3B Fungi - 20%3B Plants - 89%3B Viruses - 0%3B Other Eukaryotes - 21 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12974814, PMID:15326298, PMID:15703057, PMID:17182867, PMID:19648231, PMID:22589469, PMID:22669825, PMID:24355747, locus:2035232; locus_type=protein_coding
AT1G01160.2	chr1:000072583	0.0	W/72583-72669,72915-73016,73087-73163,73287-73395,73488-73740,73822-73883	AT1G01160.2 CDS AT1G01160 ID=AT1G01160.2; Parent=AT1G01160; Name=AT1G01160.2; Note=GRF1-interacting factor 2; curator_summary=Arabidopsis thaliana GRF1-interacting factor 2 (GIF2) mRNA; conf_class=6; symbol=GIF2; full_name=GRF1-interacting factor 2; computational_description=GRF1-interacting factor 2 (GIF2)%3B CONTAINS InterPro DOMAIN/s: SSXT (InterPro:IPR007726)%3B BEST Arabidopsis thaliana protein match is: GRF1-interacting factor 3 (TAIR:AT4G00850.1)%3B Has 425 Blast hits to 425 proteins in 91 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 291%3B Fungi - 20%3B Plants - 89%3B Viruses - 0%3B Other Eukaryotes - 21 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:12974814, PMID:15326298, PMID:15703057, PMID:17182867, PMID:19648231, PMID:22589469, PMID:22669825, PMID:24355747, locus:2035232; locus_type=protein_coding
AT1G04007.1	chr1:000072646	0.0	C/72646-73108	AT1G04007.1 antisense_lncRNA AT1G04007 ID=AT1G04007.1; Parent=AT1G04007; Name=AT1G04007.1; description=Natural antisense transcript overlaps with AT1G01160; Note=Natural antisense transcript overlaps with AT1G01160; locus_type=antisense_long_noncoding_rna
AT1G01170.1	chr1:000074105	0.0	C/74105-74250,74338-74443	AT1G01170.1 CDS AT1G01170 ID=AT1G01170.1; Parent=AT1G01170; Name=AT1G01170.1; Note=ozone-responsive stress-like protein (DUF1138); conf_class=2; computational_description=Protein of unknown function (DUF1138)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: response to stress%3B LOCATED IN: mitochondrion%2C membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1138 (InterPro:IPR009515)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1138) (TAIR:AT4G00860.1)%3B Has 86 Blast hits to 86 proteins in 15 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 86%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15703057, PMID:16055634, PMID:17059406, PMID:17432890, locus:2035247; locus_type=protein_coding
AT1G01170.2	chr1:000074105	0.0	C/74105-74250,74338-74443	AT1G01170.2 CDS AT1G01170 ID=AT1G01170.2; Parent=AT1G01170; Name=AT1G01170.2; Note=ozone-responsive stress-like protein (DUF1138); conf_class=2; computational_description=Protein of unknown function (DUF1138)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: response to stress%3B LOCATED IN: mitochondrion%2C membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1138 (InterPro:IPR009515)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1138) (TAIR:AT4G00860.1)%3B Has 86 Blast hits to 86 proteins in 15 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 86%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15703057, PMID:16055634, PMID:17059406, PMID:17432890, locus:2035247; locus_type=protein_coding
AT1G04013.1	chr1:000074435	0.0	W/74435-74683	AT1G04013.1 antisense_lncRNA AT1G04013 ID=AT1G04013.1; Parent=AT1G04013; Name=AT1G04013.1; description=Natural antisense transcript overlaps with AT1G01170; Note=Natural antisense transcript overlaps with AT1G01170; locus_type=antisense_long_noncoding_rna
AT1G01180.1	chr1:000075633	0.0	W/75633-76556	AT1G01180.1 CDS AT1G01180 ID=AT1G01180.1; Parent=AT1G01180; Name=AT1G01180.1; Note=S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; conf_class=1; computational_description=S-adenosyl-L-methionine-dependent methyltransferases superfamily protein%3B FUNCTIONS IN: methyltransferase activity%3B INVOLVED IN: lipid biosynthetic process%3B EXPRESSED IN: sperm cell%2C hypocotyl%3B CONTAINS InterPro DOMAIN/s: Rhamnosyl O-methyltransferase/Cephalosporin hydroxylase (InterPro:IPR007072)%3B Has 274 Blast hits to 274 proteins in 51 species: Archae - 0%3B Bacteria - 75%3B Metazoa - 2%3B Fungi - 0%3B Plants - 46%3B Viruses - 0%3B Other Eukaryotes - 151 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12101121, PMID:15703057, PMID:16520461, locus:2035262; locus_type=protein_coding
AT1TE00220	chr1:000076844	0.0	W/76844-77500	AT1TE00220 transposable_element AT1TE00220 ID=AT1TE00220; Name=AT1TE00220; Alias=TA11
AT1G08765.1	chr1:000077537	0.0	W/77537-80345	AT1G08765.1 transcript_region AT1G08765 ID=AT1G08765.1; Parent=AT1G08765; computational_description=novel transcribed region; Name=AT1G08765.1; locus_type=novel_transcribed_region
AT1G08765.2	chr1:000077727	0.0	W/77727-79340	AT1G08765.2 transcript_region AT1G08765 ID=AT1G08765.2; Parent=AT1G08765; computational_description=novel transcribed region; Name=AT1G08765.2; locus_type=novel_transcribed_region
AT1TE00225	chr1:000078288	0.0	C/78288-78785	AT1TE00225 transposable_element AT1TE00225 ID=AT1TE00225; Name=AT1TE00225; Alias=HELITRONY1D
AT1G01183.1	chr1:000078927	0.0	C/78927-79037	AT1G01183.1 miRNA_primary_transcript AT1G01183 ID=AT1G01183.1; Parent=AT1G01183; Alias=p_MI0000199; Name=ath-MIR165a; symbol=MIR165A; curator_summary=Encodes a microRNA that targets several HD-ZIPIII family members including PHV%2C PHB%2C REV%2C ATHB-8%2C and ATHB-15. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UCGGACCAGGCUUCAUCCCC; Note=microRNA ath-MIR165a precursor; full_name=microRNA165A; Dbxref=PMID:15200956, PMID:18794352, PMID:19054365, PMID:17549070, PMID:19704656, PMID:19879265, PMID:20410882, PMID:21483759, PMID:21558378, PMID:21610018, PMID:22476466, PMID:22589131, PMID:22951404, PMID:23292599, PMID:23645346, PMID:23918970, PMID:23935517, PMID:24296072, locus:1009023078, PMID:15200956, PMID:18794352, PMID:19054365, PMID:17549070, PMID:19704656, PMID:19879265, PMID:20410882, PMID:21483759, PMID:21558378, PMID:21610018, PMID:22476466, PMID:22589131, PMID:22951404, PMID:23292599, PMID:23645346, PMID:23918970, PMID:23935517, PMID:24296072, PMID:25406978, PMID:25711809, locus:1009023078; locus_type=mirna
ath-miR165a-3p	chr1:000078932	0.0	C/78932-78952	ath-miR165a-3p miRNA ath-miR165a-3p ID=ath-miR165a-3p; Alias=MIMAT0000187; Name=ath-miR165a-3p; Derives_from=AT1G01183.1; Note=microRNA ath-miR165a-3p; computational_description=mature miRNA accession:MIMAT0000187
ath-miR165a-5p	chr1:000079010	0.0	C/79010-79030	ath-miR165a-5p miRNA ath-miR165a-5p ID=ath-miR165a-5p; Alias=MIMAT0031879; Name=ath-miR165a-5p; Derives_from=AT1G01183.1; Note=microRNA ath-miR165a-5p; computational_description=mature miRNA accession:MIMAT0031879
AT1G01190.1	chr1:000083045	0.0	C/83045-83671,83884-84864	AT1G01190.1 CDS AT1G01190 ID=AT1G01190.1; Parent=AT1G01190; Name=AT1G01190.1; Note=cytochrome P450%2C family 78%2C subfamily A%2C polypeptide 8; curator_summary=member of CYP78A; conf_class=2; symbol=CYP78A8; full_name=cytochrome P450%2C family 78%2C subfamily A%2C polypeptide 8; computational_description=cytochrome P450%2C family 78%2C subfamily A%2C polypeptide 8 (CYP78A8)%3B FUNCTIONS IN: electron carrier activity%2C monooxygenase activity%2C iron ion binding%2C oxygen binding%2C heme binding%3B INVOLVED IN: oxidation reduction%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 6 plant structures%3B EXPRESSED DURING: LP.10 ten leaves visible%2C LP.02 two leaves visible%2C LP.12 twelve leaves visible%3B CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128)%2C Cytochrome P450%2C conserved site (InterPro:IPR017972)%2C Cytochrome P450%2C E-class%2C group I (InterPro:IPR002401)%3B BEST Arabidopsis thaliana protein match is: cytochrome P450%2C family 78%2C subfamily A%2C polypeptide 6 (TAIR:AT2G46660.1)%3B Has 32104 Blast hits to 32001 proteins in 1725 species: Archae - 48%3B Bacteria - 3617%3B Metazoa - 11430%3B Fungi - 6777%3B Plants - 9112%3B Viruses - 3%3B Other Eukaryotes - 1117 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15280363, PMID:15546358, PMID:15703057, PMID:16520461, PMID:15604721, PMID:18650403, PMID:20736450, PMID:23610218, PMID:23733073, locus:2035282; locus_type=protein_coding
AT1G01190.2	chr1:000083045	0.0	C/83045-83671,83884-84879	AT1G01190.2 CDS AT1G01190 ID=AT1G01190.2; Parent=AT1G01190; Name=AT1G01190.2; Note=cytochrome P450%2C family 78%2C subfamily A%2C polypeptide 8; symbol=CYP78A8; full_name=cytochrome P450%2C family 78%2C subfamily A%2C polypeptide 8; curator_summary=member of CYP78A; computational_description=cytochrome P450%2C family 78%2C subfamily A%2C polypeptide 8 (CYP78A8)%3B FUNCTIONS IN: electron carrier activity%2C monooxygenase activity%2C iron ion binding%2C oxygen binding%2C heme binding%3B INVOLVED IN: oxidation reduction%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 6 plant structures%3B EXPRESSED DURING: LP.10 ten leaves visible%2C LP.02 two leaves visible%2C LP.12 twelve leaves visible%3B CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128)%2C Cytochrome P450%2C conserved site (InterPro:IPR017972)%2C Cytochrome P450%2C E-class%2C group I (InterPro:IPR002401)%3B BEST Arabidopsis thaliana protein match is: cytochrome P450%2C family 78%2C subfamily A%2C polypeptide 6 (TAIR:AT2G46660.1)%3B Has 32104 Blast hits to 32001 proteins in 1725 species: Archae - 48%3B Bacteria - 3617%3B Metazoa - 11430%3B Fungi - 6777%3B Plants - 9112%3B Viruses - 3%3B Other Eukaryotes - 1117 (source: NCBI BLink).; Dbxref=PMID:15280363, PMID:15546358, PMID:15703057, PMID:16520461, PMID:15604721, PMID:18650403, PMID:20736450, PMID:23610218, PMID:23733073, locus:2035282; locus_type=protein_coding
AT1G01200.1	chr1:000086715	0.0	C/86715-87162,87880-88145	AT1G01200.1 CDS AT1G01200 ID=AT1G01200.1; Parent=AT1G01200; Name=AT1G01200.1; Note=RAB GTPase homolog A3; conf_class=1; symbol=RABA3; Alias=ATRAB-A3, ARABIDOPSIS RAB GTPASE HOMOLOG A3, ATRABA3, RAB GTPase homolog A3; full_name=RAB GTPase homolog A3; computational_description=RAB GTPase homolog A3 (RABA3)%3B FUNCTIONS IN: GTP binding%3B INVOLVED IN: protein transport%2C small GTPase mediated signal transduction%3B LOCATED IN: endosome%2C nucleus%2C cell plate%3B EXPRESSED IN: lateral root cap%2C hypocotyl%2C root%2C flower%2C epidermis%3B EXPRESSED DURING: petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806)%2C Small GTP-binding protein (InterPro:IPR005225)%2C Small GTPase (InterPro:IPR020851)%2C Ras (InterPro:IPR013753)%2C Ras small GTPase%2C Rab type (InterPro:IPR003579)%2C Rab11-related (InterPro:IPR015595)%3B BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A4C (TAIR:AT5G47960.1)%3B Has 27164 Blast hits to 27137 proteins in 734 species: Archae - 19%3B Bacteria - 134%3B Metazoa - 14292%3B Fungi - 3779%3B Plants - 3194%3B Viruses - 20%3B Other Eukaryotes - 5726 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12644670, PMID:15703057, PMID:16581873, PMID:18239134, locus:2035302; locus_type=protein_coding
AT1G01210.1	chr1:000088977	0.0	W/88977-89081,89173-89263,89405-89529	AT1G01210.1 CDS AT1G01210 ID=AT1G01210.1; Parent=AT1G01210; Name=AT1G01210.1; Note=DNA-directed RNA polymerase%2C subunit M%2C archaeal; conf_class=1; computational_description=DNA-directed RNA polymerase%2C subunit M%2C archaeal%3B FUNCTIONS IN: in 6 functions%3B INVOLVED IN: RNA elongation%2C regulation of transcription%2C DNA-dependent%2C transcription%2C regulation of transcription%3B LOCATED IN: nucleus%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C TFIIS-type (InterPro:IPR001222)%2C DNA-directed RNA polymerase%2C M/15kDa subunit (InterPro:IPR001529)%2C DNA-directed RNA polymerase%2C subunit M%2C archaeal (InterPro:IPR006288)%2C DNA-directed RNA polymerase M%2C 15kDa subunit%2C conserved site (InterPro:IPR019761)%3B BEST Arabidopsis thaliana protein match is: DNA-directed RNA polymerase%2C subunit M%2C archaeal (TAIR:AT4G07950.1)%3B Has 1129 Blast hits to 1129 proteins in 326 species: Archae - 242%3B Bacteria - 0%3B Metazoa - 276%3B Fungi - 294%3B Plants - 112%3B Viruses - 0%3B Other Eukaryotes - 205 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:17447913, locus:2035322; locus_type=protein_coding
AT1G01210.2	chr1:000088977	0.0	W/88977-89081,89173-89263,89405-89529	AT1G01210.2 CDS AT1G01210 ID=AT1G01210.2; Parent=AT1G01210; Name=AT1G01210.2; Note=DNA-directed RNA polymerase%2C subunit M%2C archaeal; Dbxref=PMID:17447913, locus:2035322; computational_description=DNA-directed RNA polymerase%2C subunit M%2C archaeal%3B FUNCTIONS IN: in 6 functions%3B INVOLVED IN: RNA elongation%2C regulation of transcription%2C DNA-dependent%2C transcription%2C regulation of transcription%3B LOCATED IN: nucleus%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C TFIIS-type (InterPro:IPR001222)%2C DNA-directed RNA polymerase%2C M/15kDa subunit (InterPro:IPR001529)%2C DNA-directed RNA polymerase%2C subunit M%2C archaeal (InterPro:IPR006288)%2C DNA-directed RNA polymerase M%2C 15kDa subunit%2C conserved site (InterPro:IPR019761)%3B BEST Arabidopsis thaliana protein match is: DNA-directed RNA polymerase%2C subunit M%2C archaeal (TAIR:AT4G07950.1)%3B Has 1129 Blast hits to 1129 proteins in 326 species: Archae - 242%3B Bacteria - 0%3B Metazoa - 276%3B Fungi - 294%3B Plants - 112%3B Viruses - 0%3B Other Eukaryotes - 205 (source: NCBI BLink).; locus_type=protein_coding
AT1G01210.3	chr1:000088977	0.0	W/88977-89081,89173-89263,89405-89529	AT1G01210.3 CDS AT1G01210 ID=AT1G01210.3; Parent=AT1G01210; Name=AT1G01210.3; Note=DNA-directed RNA polymerase%2C subunit M%2C archaeal; Dbxref=PMID:17447913, locus:2035322; computational_description=DNA-directed RNA polymerase%2C subunit M%2C archaeal%3B FUNCTIONS IN: in 6 functions%3B INVOLVED IN: RNA elongation%2C regulation of transcription%2C DNA-dependent%2C transcription%2C regulation of transcription%3B LOCATED IN: nucleus%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C TFIIS-type (InterPro:IPR001222)%2C DNA-directed RNA polymerase%2C M/15kDa subunit (InterPro:IPR001529)%2C DNA-directed RNA polymerase%2C subunit M%2C archaeal (InterPro:IPR006288)%2C DNA-directed RNA polymerase M%2C 15kDa subunit%2C conserved site (InterPro:IPR019761)%3B BEST Arabidopsis thaliana protein match is: DNA-directed RNA polymerase%2C subunit M%2C archaeal (TAIR:AT4G07950.1)%3B Has 1129 Blast hits to 1129 proteins in 326 species: Archae - 242%3B Bacteria - 0%3B Metazoa - 276%3B Fungi - 294%3B Plants - 112%3B Viruses - 0%3B Other Eukaryotes - 205 (source: NCBI BLink).; locus_type=protein_coding
AT1G04017.1	chr1:000090169	0.0	C/90169-90401	AT1G04017.1 lnc_RNA AT1G04017 ID=AT1G04017.1; Parent=AT1G04017; Name=AT1G04017.1; locus_type=long_noncoding_rna
AT1G04023.1	chr1:000091356	0.0	C/91356-91685	AT1G04023.1 lnc_RNA AT1G04023 ID=AT1G04023.1; Parent=AT1G04023; Name=AT1G04023.1; locus_type=long_noncoding_rna
AT1G01220.1	chr1:000091750	0.0	W/91750-92070,92270-92501,92569-92933,93045-93171,93271-94281,94357-95075,95160-95552	AT1G01220.1 CDS AT1G01220 ID=AT1G01220.1; Parent=AT1G01220; Name=AT1G01220.1; Note=L-fucokinase/GDP-L-fucose pyrophosphorylase; curator_summary=Encodes a bifunctional enzyme that has both L-fucokinase and GDP-L-fucose pyrophosphorylase activities. It catalyzes the two steps of the L-fucose salvage pathway for the generation of activated GDP-L-fucose. This pathway seems to be of minor importance for cell wall polysaccharide biosynthesis compared to the de novo GDP-L-fucose biosynthesis pathway in Arabidopsis.; conf_class=6; symbol=FKGP; Alias=AtFKGP, Arabidopsis thaliana L-fucokinase/GDP-L-fucose pyrophosphorylase; full_name=L-fucokinase/GDP-L-fucose pyrophosphorylase; computational_description=L-fucokinase/GDP-L-fucose pyrophosphorylase (FKGP)%3B FUNCTIONS IN: fucose-1-phosphate guanylyltransferase activity%2C fucokinase activity%2C ATP binding%2C galactokinase activity%3B INVOLVED IN: GDP-L-fucose salvage%3B LOCATED IN: cytoplasm%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Mevalonate/galactokinase (InterPro:IPR006206)%2C Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568)%2C GHMP kinase (InterPro:IPR006204)%2C L-fucokinase (InterPro:IPR012887)%2C Ribosomal protein S5 domain 2-type fold%2C subgroup (InterPro:IPR014721)%2C GHMP kinase%2C C-terminal (InterPro:IPR013750)%3B Has 1878 Blast hits to 1819 proteins in 539 species: Archae - 59%3B Bacteria - 918%3B Metazoa - 155%3B Fungi - 3%3B Plants - 87%3B Viruses - 3%3B Other Eukaryotes - 653 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:15703057, PMID:17227549, PMID:18199744, locus:2035362; locus_type=protein_coding
AT1G01220.7	chr1:000091750	0.0	W/91750-92070,92270-92501,92569-92933,93045-93171,93271-94281,94357-95075,95160-95552	AT1G01220.7 CDS AT1G01220 ID=AT1G01220.7; Parent=AT1G01220; Name=AT1G01220.7; Note=L-fucokinase/GDP-L-fucose pyrophosphorylase; symbol=FKGP; Alias=AtFKGP, Arabidopsis thaliana L-fucokinase/GDP-L-fucose pyrophosphorylase; full_name=L-fucokinase/GDP-L-fucose pyrophosphorylase; Dbxref=PMID:15703057, PMID:17227549, PMID:18199744, locus:2035362; curator_summary=Encodes a bifunctional enzyme that has both L-fucokinase and GDP-L-fucose pyrophosphorylase activities. It catalyzes the two steps of the L-fucose salvage pathway for the generation of activated GDP-L-fucose. This pathway seems to be of minor importance for cell wall polysaccharide biosynthesis compared to the de novo GDP-L-fucose biosynthesis pathway in Arabidopsis.; computational_description=L-fucokinase/GDP-L-fucose pyrophosphorylase (FKGP)%3B FUNCTIONS IN: fucose-1-phosphate guanylyltransferase activity%2C fucokinase activity%2C ATP binding%2C galactokinase activity%3B INVOLVED IN: GDP-L-fucose salvage%3B LOCATED IN: cytoplasm%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Mevalonate/galactokinase (InterPro:IPR006206)%2C Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568)%2C GHMP kinase (InterPro:IPR006204)%2C L-fucokinase (InterPro:IPR012887)%2C Ribosomal protein S5 domain 2-type fold%2C subgroup (InterPro:IPR014721)%2C GHMP kinase%2C C-terminal (InterPro:IPR013750)%3B Has 1878 Blast hits to 1819 proteins in 539 species: Archae - 59%3B Bacteria - 918%3B Metazoa - 155%3B Fungi - 3%3B Plants - 87%3B Viruses - 3%3B Other Eukaryotes - 653 (source: NCBI BLink).; locus_type=protein_coding
AT1G01220.3	chr1:000092246	0.0	W/92246-92501,92569-92933,93045-93171,93271-94281,94357-95075,95160-95552	AT1G01220.3 CDS AT1G01220 ID=AT1G01220.3; Parent=AT1G01220; Name=AT1G01220.3; Note=L-fucokinase/GDP-L-fucose pyrophosphorylase; symbol=FKGP; Alias=AtFKGP, Arabidopsis thaliana L-fucokinase/GDP-L-fucose pyrophosphorylase; full_name=L-fucokinase/GDP-L-fucose pyrophosphorylase; curator_summary=Encodes a bifunctional enzyme that has both L-fucokinase and GDP-L-fucose pyrophosphorylase activities. It catalyzes the two steps of the L-fucose salvage pathway for the generation of activated GDP-L-fucose. This pathway seems to be of minor importance for cell wall polysaccharide biosynthesis compared to the de novo GDP-L-fucose biosynthesis pathway in Arabidopsis.; computational_description=L-fucokinase/GDP-L-fucose pyrophosphorylase (FKGP)%3B FUNCTIONS IN: fucose-1-phosphate guanylyltransferase activity%2C fucokinase activity%2C ATP binding%2C galactokinase activity%3B INVOLVED IN: GDP-L-fucose salvage%3B LOCATED IN: cytoplasm%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Mevalonate/galactokinase (InterPro:IPR006206)%2C Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568)%2C GHMP kinase (InterPro:IPR006204)%2C L-fucokinase (InterPro:IPR012887)%2C Ribosomal protein S5 domain 2-type fold%2C subgroup (InterPro:IPR014721)%2C GHMP kinase%2C C-terminal (InterPro:IPR013750)%3B Has 1878 Blast hits to 1819 proteins in 539 species: Archae - 59%3B Bacteria - 918%3B Metazoa - 155%3B Fungi - 3%3B Plants - 87%3B Viruses - 3%3B Other Eukaryotes - 653 (source: NCBI BLink).; Dbxref=PMID:15703057, PMID:17227549, PMID:18199744, locus:2035362; locus_type=protein_coding
AT1G01220.8	chr1:000092246	0.0	W/92246-92501,92569-92933,93045-93171,93271-94281,94357-95075,95160-95552	AT1G01220.8 CDS AT1G01220 ID=AT1G01220.8; Parent=AT1G01220; Name=AT1G01220.8; Note=L-fucokinase/GDP-L-fucose pyrophosphorylase; symbol=FKGP; Alias=AtFKGP, Arabidopsis thaliana L-fucokinase/GDP-L-fucose pyrophosphorylase; full_name=L-fucokinase/GDP-L-fucose pyrophosphorylase; curator_summary=Encodes a bifunctional enzyme that has both L-fucokinase and GDP-L-fucose pyrophosphorylase activities. It catalyzes the two steps of the L-fucose salvage pathway for the generation of activated GDP-L-fucose. This pathway seems to be of minor importance for cell wall polysaccharide biosynthesis compared to the de novo GDP-L-fucose biosynthesis pathway in Arabidopsis.; computational_description=L-fucokinase/GDP-L-fucose pyrophosphorylase (FKGP)%3B FUNCTIONS IN: fucose-1-phosphate guanylyltransferase activity%2C fucokinase activity%2C ATP binding%2C galactokinase activity%3B INVOLVED IN: GDP-L-fucose salvage%3B LOCATED IN: cytoplasm%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Mevalonate/galactokinase (InterPro:IPR006206)%2C Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568)%2C GHMP kinase (InterPro:IPR006204)%2C L-fucokinase (InterPro:IPR012887)%2C Ribosomal protein S5 domain 2-type fold%2C subgroup (InterPro:IPR014721)%2C GHMP kinase%2C C-terminal (InterPro:IPR013750)%3B Has 1878 Blast hits to 1819 proteins in 539 species: Archae - 59%3B Bacteria - 918%3B Metazoa - 155%3B Fungi - 3%3B Plants - 87%3B Viruses - 3%3B Other Eukaryotes - 653 (source: NCBI BLink).; Dbxref=PMID:15703057, PMID:17227549, PMID:18199744, locus:2035362; locus_type=protein_coding
AT1G01220.4	chr1:000092270	0.0	W/92270-92501,92569-92933,93045-93171,93271-94281,94357-95075,95160-95552	AT1G01220.4 CDS AT1G01220 ID=AT1G01220.4; Parent=AT1G01220; Name=AT1G01220.4; Note=L-fucokinase/GDP-L-fucose pyrophosphorylase; symbol=FKGP; Alias=AtFKGP, Arabidopsis thaliana L-fucokinase/GDP-L-fucose pyrophosphorylase; full_name=L-fucokinase/GDP-L-fucose pyrophosphorylase; curator_summary=Encodes a bifunctional enzyme that has both L-fucokinase and GDP-L-fucose pyrophosphorylase activities. It catalyzes the two steps of the L-fucose salvage pathway for the generation of activated GDP-L-fucose. This pathway seems to be of minor importance for cell wall polysaccharide biosynthesis compared to the de novo GDP-L-fucose biosynthesis pathway in Arabidopsis.; computational_description=L-fucokinase/GDP-L-fucose pyrophosphorylase (FKGP)%3B FUNCTIONS IN: fucose-1-phosphate guanylyltransferase activity%2C fucokinase activity%2C ATP binding%2C galactokinase activity%3B INVOLVED IN: GDP-L-fucose salvage%3B LOCATED IN: cytoplasm%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Mevalonate/galactokinase (InterPro:IPR006206)%2C Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568)%2C GHMP kinase (InterPro:IPR006204)%2C L-fucokinase (InterPro:IPR012887)%2C Ribosomal protein S5 domain 2-type fold%2C subgroup (InterPro:IPR014721)%2C GHMP kinase%2C C-terminal (InterPro:IPR013750)%3B Has 1878 Blast hits to 1819 proteins in 539 species: Archae - 59%3B Bacteria - 918%3B Metazoa - 155%3B Fungi - 3%3B Plants - 87%3B Viruses - 3%3B Other Eukaryotes - 653 (source: NCBI BLink).; Dbxref=PMID:15703057, PMID:17227549, PMID:18199744, locus:2035362; locus_type=protein_coding
AT1G01220.2	chr1:000092583	0.0	W/92583-92933,93045-93171,93271-94281,94357-95075,95160-95552	AT1G01220.2 CDS AT1G01220 ID=AT1G01220.2; Parent=AT1G01220; Name=AT1G01220.2; Note=L-fucokinase/GDP-L-fucose pyrophosphorylase; symbol=FKGP; Alias=AtFKGP, Arabidopsis thaliana L-fucokinase/GDP-L-fucose pyrophosphorylase; full_name=L-fucokinase/GDP-L-fucose pyrophosphorylase; curator_summary=Encodes a bifunctional enzyme that has both L-fucokinase and GDP-L-fucose pyrophosphorylase activities. It catalyzes the two steps of the L-fucose salvage pathway for the generation of activated GDP-L-fucose. This pathway seems to be of minor importance for cell wall polysaccharide biosynthesis compared to the de novo GDP-L-fucose biosynthesis pathway in Arabidopsis.; computational_description=L-fucokinase/GDP-L-fucose pyrophosphorylase (FKGP)%3B FUNCTIONS IN: fucose-1-phosphate guanylyltransferase activity%2C fucokinase activity%2C ATP binding%2C galactokinase activity%3B INVOLVED IN: GDP-L-fucose salvage%3B LOCATED IN: cytoplasm%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Mevalonate/galactokinase (InterPro:IPR006206)%2C Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568)%2C GHMP kinase (InterPro:IPR006204)%2C L-fucokinase (InterPro:IPR012887)%2C Ribosomal protein S5 domain 2-type fold%2C subgroup (InterPro:IPR014721)%2C GHMP kinase%2C C-terminal (InterPro:IPR013750)%3B Has 1878 Blast hits to 1819 proteins in 539 species: Archae - 59%3B Bacteria - 918%3B Metazoa - 155%3B Fungi - 3%3B Plants - 87%3B Viruses - 3%3B Other Eukaryotes - 653 (source: NCBI BLink).; Dbxref=PMID:15703057, PMID:17227549, PMID:18199744, locus:2035362; locus_type=protein_coding
AT1G01220.5	chr1:000092583	0.0	W/92583-92933,93045-93171,93271-94281,94357-95075,95160-95552	AT1G01220.5 CDS AT1G01220 ID=AT1G01220.5; Parent=AT1G01220; Name=AT1G01220.5; Note=L-fucokinase/GDP-L-fucose pyrophosphorylase; symbol=FKGP; Alias=AtFKGP, Arabidopsis thaliana L-fucokinase/GDP-L-fucose pyrophosphorylase; full_name=L-fucokinase/GDP-L-fucose pyrophosphorylase; curator_summary=Encodes a bifunctional enzyme that has both L-fucokinase and GDP-L-fucose pyrophosphorylase activities. It catalyzes the two steps of the L-fucose salvage pathway for the generation of activated GDP-L-fucose. This pathway seems to be of minor importance for cell wall polysaccharide biosynthesis compared to the de novo GDP-L-fucose biosynthesis pathway in Arabidopsis.; computational_description=L-fucokinase/GDP-L-fucose pyrophosphorylase (FKGP)%3B FUNCTIONS IN: fucose-1-phosphate guanylyltransferase activity%2C fucokinase activity%2C ATP binding%2C galactokinase activity%3B INVOLVED IN: GDP-L-fucose salvage%3B LOCATED IN: cytoplasm%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Mevalonate/galactokinase (InterPro:IPR006206)%2C Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568)%2C GHMP kinase (InterPro:IPR006204)%2C L-fucokinase (InterPro:IPR012887)%2C Ribosomal protein S5 domain 2-type fold%2C subgroup (InterPro:IPR014721)%2C GHMP kinase%2C C-terminal (InterPro:IPR013750)%3B Has 1878 Blast hits to 1819 proteins in 539 species: Archae - 59%3B Bacteria - 918%3B Metazoa - 155%3B Fungi - 3%3B Plants - 87%3B Viruses - 3%3B Other Eukaryotes - 653 (source: NCBI BLink).; Dbxref=PMID:15703057, PMID:17227549, PMID:18199744, locus:2035362; locus_type=protein_coding
AT1G01220.6	chr1:000092583	0.0	W/92583-92933,93045-93171,93271-94281,94357-95075,95160-95552	AT1G01220.6 CDS AT1G01220 ID=AT1G01220.6; Parent=AT1G01220; Name=AT1G01220.6; Note=L-fucokinase/GDP-L-fucose pyrophosphorylase; symbol=FKGP; Alias=AtFKGP, Arabidopsis thaliana L-fucokinase/GDP-L-fucose pyrophosphorylase; full_name=L-fucokinase/GDP-L-fucose pyrophosphorylase; curator_summary=Encodes a bifunctional enzyme that has both L-fucokinase and GDP-L-fucose pyrophosphorylase activities. It catalyzes the two steps of the L-fucose salvage pathway for the generation of activated GDP-L-fucose. This pathway seems to be of minor importance for cell wall polysaccharide biosynthesis compared to the de novo GDP-L-fucose biosynthesis pathway in Arabidopsis.; computational_description=L-fucokinase/GDP-L-fucose pyrophosphorylase (FKGP)%3B FUNCTIONS IN: fucose-1-phosphate guanylyltransferase activity%2C fucokinase activity%2C ATP binding%2C galactokinase activity%3B INVOLVED IN: GDP-L-fucose salvage%3B LOCATED IN: cytoplasm%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Mevalonate/galactokinase (InterPro:IPR006206)%2C Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568)%2C GHMP kinase (InterPro:IPR006204)%2C L-fucokinase (InterPro:IPR012887)%2C Ribosomal protein S5 domain 2-type fold%2C subgroup (InterPro:IPR014721)%2C GHMP kinase%2C C-terminal (InterPro:IPR013750)%3B Has 1878 Blast hits to 1819 proteins in 539 species: Archae - 59%3B Bacteria - 918%3B Metazoa - 155%3B Fungi - 3%3B Plants - 87%3B Viruses - 3%3B Other Eukaryotes - 653 (source: NCBI BLink).; Dbxref=PMID:15703057, PMID:17227549, PMID:18199744, locus:2035362; locus_type=protein_coding
AT1G01225.1	chr1:000096064	0.0	W/96064-96157,96554-97242	AT1G01225.1 CDS AT1G01225 ID=AT1G01225.1; Parent=AT1G01225; Name=AT1G01225.1; Note=NC domain-containing protein-like protein; conf_class=1; computational_description=NC domain-containing protein-related%3B CONTAINS InterPro DOMAIN/s: NC (InterPro:IPR007053)%3B BEST Arabidopsis thaliana protein match is: NC domain-containing protein-related (TAIR:AT4G00905.1)%3B Has 173 Blast hits to 172 proteins in 34 species: Archae - 0%3B Bacteria - 24%3B Metazoa - 5%3B Fungi - 0%3B Plants - 139%3B Viruses - 0%3B Other Eukaryotes - 5 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15703057, PMID:22589469, locus:505006091; locus_type=protein_coding
AT1G01230.1	chr1:000097620	0.0	W/97620-97805,98457-98605,98908-99046	AT1G01230.1 CDS AT1G01230 ID=AT1G01230.1; Parent=AT1G01230; Name=AT1G01230.1; Note=ORMDL family protein; conf_class=2; computational_description=ORMDL family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: protein folding%3B LOCATED IN: integral to membrane%2C endoplasmic reticulum%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: ORMDL (InterPro:IPR007203)%3B BEST Arabidopsis thaliana protein match is: ORMDL family protein (TAIR:AT5G42000.1)%3B Has 538 Blast hits to 538 proteins in 163 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 276%3B Fungi - 148%3B Plants - 90%3B Viruses - 0%3B Other Eukaryotes - 24 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15703057, PMID:18775970, locus:2035352; locus_type=protein_coding
AT1G01240.1	chr1:000100683	0.0	W/100683-101678	AT1G01240.1 CDS AT1G01240 ID=AT1G01240.1; Parent=AT1G01240; Name=AT1G01240.1; Note=transmembrane protein; conf_class=4; computational_description=unknown protein%3B INVOLVED IN: N-terminal protein myristoylation%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 11 growth stages%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46550.1)%3B Has 95 Blast hits to 78 proteins in 16 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 11%3B Fungi - 0%3B Plants - 80%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:12912986, PMID:15703057, PMID:23517122, locus:2035242; locus_type=protein_coding
AT1G01240.2	chr1:000100683	0.0	W/100683-101678	AT1G01240.2 CDS AT1G01240 ID=AT1G01240.2; Parent=AT1G01240; Name=AT1G01240.2; Note=transmembrane protein; conf_class=2; computational_description=unknown protein%3B INVOLVED IN: N-terminal protein myristoylation%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 11 growth stages%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46550.1)%3B Has 95 Blast hits to 78 proteins in 16 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 11%3B Fungi - 0%3B Plants - 80%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12912986, PMID:15703057, PMID:23517122, locus:2035242; locus_type=protein_coding
AT1G01240.3	chr1:000100683	0.0	W/100683-101678	AT1G01240.3 CDS AT1G01240 ID=AT1G01240.3; Parent=AT1G01240; Name=AT1G01240.3; Note=transmembrane protein; conf_class=4; computational_description=unknown protein%3B INVOLVED IN: N-terminal protein myristoylation%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 11 growth stages%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46550.1)%3B Has 95 Blast hits to 78 proteins in 16 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 11%3B Fungi - 0%3B Plants - 80%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:12912986, PMID:15703057, PMID:23517122, locus:2035242; locus_type=protein_coding
AT1G01240.4	chr1:000100683	0.0	W/100683-101678	AT1G01240.4 CDS AT1G01240 ID=AT1G01240.4; Parent=AT1G01240; Name=AT1G01240.4; Note=transmembrane protein; Dbxref=PMID:12912986, PMID:15703057, PMID:23517122, locus:2035242; computational_description=unknown protein%3B INVOLVED IN: N-terminal protein myristoylation%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 11 growth stages%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46550.1)%3B Has 95 Blast hits to 78 proteins in 16 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 11%3B Fungi - 0%3B Plants - 80%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; locus_type=protein_coding
AT1G01240.5	chr1:000100683	0.0	W/100683-101678	AT1G01240.5 CDS AT1G01240 ID=AT1G01240.5; Parent=AT1G01240; Name=AT1G01240.5; Note=transmembrane protein; Dbxref=PMID:12912986, PMID:15703057, PMID:23517122, locus:2035242; computational_description=unknown protein%3B INVOLVED IN: N-terminal protein myristoylation%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 11 growth stages%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46550.1)%3B Has 95 Blast hits to 78 proteins in 16 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 11%3B Fungi - 0%3B Plants - 80%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; locus_type=protein_coding
AT1G01250.1	chr1:000104731	0.0	C/104731-105309	AT1G01250.1 CDS AT1G01250 ID=AT1G01250.1; Parent=AT1G01250; Name=AT1G01250.1; Note=Integrase-type DNA-binding superfamily protein; curator_summary=encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.; conf_class=1; computational_description=Integrase-type DNA-binding superfamily protein%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B LOCATED IN: nucleus%2C chloroplast%3B EXPRESSED IN: 10 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: DNA-binding%2C integrase-type (InterPro:IPR016177)%2C Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (InterPro:IPR001471)%3B BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G25810.1)%3B Has 5404 Blast hits to 5361 proteins in 232 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 5399%3B Viruses - 0%3B Other Eukaryotes - 5 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11118137, PMID:14576160, PMID:15010618, PMID:15703057, PMID:16151182, PMID:17316173, PMID:17885809, PMID:18230180, PMID:24377444, locus:2035257; locus_type=protein_coding
AT1G01260.1	chr1:000109595	0.0	W/109595-111367	AT1G01260.1 CDS AT1G01260 ID=AT1G01260.1; Parent=AT1G01260; Name=AT1G01260.1; Note=basic helix-loop-helix (bHLH) DNA-binding superfamily protein; conf_class=1; Alias=JAM2, Jasmonate Associated MYC2 LIKE 2; computational_description=basic helix-loop-helix (bHLH) DNA-binding superfamily protein%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: ABA-inducible BHLH-type transcription factor (TAIR:AT2G46510.1)%3B Has 3647 Blast hits to 3273 proteins in 223 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 174%3B Fungi - 93%3B Plants - 3336%3B Viruses - 0%3B Other Eukaryotes - 42 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11118137, PMID:12679534, PMID:12897250, PMID:14600211, PMID:15703057, PMID:16944199, PMID:17828375, PMID:18775970, PMID:21889054, PMID:22037706, PMID:23852442, PMID:24056034, PMID:24465948, locus:2035237; locus_type=protein_coding
AT1G01260.2	chr1:000109595	0.0	W/109595-111367	AT1G01260.2 CDS AT1G01260 ID=AT1G01260.2; Parent=AT1G01260; Name=AT1G01260.2; Note=basic helix-loop-helix (bHLH) DNA-binding superfamily protein; conf_class=2; Alias=JAM2, Jasmonate Associated MYC2 LIKE 2; computational_description=basic helix-loop-helix (bHLH) DNA-binding superfamily protein%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: ABA-inducible BHLH-type transcription factor (TAIR:AT2G46510.1)%3B Has 3647 Blast hits to 3273 proteins in 223 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 174%3B Fungi - 93%3B Plants - 3336%3B Viruses - 0%3B Other Eukaryotes - 42 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:12679534, PMID:12897250, PMID:14600211, PMID:15703057, PMID:16944199, PMID:17828375, PMID:18775970, PMID:21889054, PMID:22037706, PMID:23852442, PMID:24056034, PMID:24465948, locus:2035237; locus_type=protein_coding
AT1G01260.3	chr1:000109595	0.0	W/109595-111367	AT1G01260.3 CDS AT1G01260 ID=AT1G01260.3; Parent=AT1G01260; Name=AT1G01260.3; Note=basic helix-loop-helix (bHLH) DNA-binding superfamily protein; conf_class=4; Alias=JAM2, Jasmonate Associated MYC2 LIKE 2; computational_description=basic helix-loop-helix (bHLH) DNA-binding superfamily protein%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: ABA-inducible BHLH-type transcription factor (TAIR:AT2G46510.1)%3B Has 3647 Blast hits to 3273 proteins in 223 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 174%3B Fungi - 93%3B Plants - 3336%3B Viruses - 0%3B Other Eukaryotes - 42 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:11118137, PMID:12679534, PMID:12897250, PMID:14600211, PMID:15703057, PMID:16944199, PMID:17828375, PMID:18775970, PMID:21889054, PMID:22037706, PMID:23852442, PMID:24056034, PMID:24465948, locus:2035237; locus_type=protein_coding
AT1G01270.1	chr1:000111890	0.0	C/111890-111961	AT1G01270.1 tRNA AT1G01270 ID=AT1G01270.1; Parent=AT1G01270; Note=tRNA-Gln; computational_description=tRNA-Gln (anticodon: CTG); Dbxref=PMID:8980477, PMID:23066098, PMID:8980477, locus:3691158; Name=AT1G01270.1; locus_type=pre_trna
AT1G01280.1	chr1:000112290	0.0	W/112290-113195,113279-113905	AT1G01280.1 CDS AT1G01280 ID=AT1G01280.1; Parent=AT1G01280; Name=AT1G01280.1; Note=cytochrome P450%2C family 703%2C subfamily A%2C polypeptide 2; curator_summary=member of CYP703A CYP703A2 is expressed specifically in anthers of land plants%2C catalyzing the in-chain hydroxylation at the C-7 position of medium-chain saturated fatty acids (lauric acid in-chain hydroxylase) which is involved in pollen development (sporopollenin synthesis).; conf_class=2; symbol=CYP703A2; Alias=CYP703; full_name=cytochrome P450%2C family 703%2C subfamily A%2C polypeptide 2; computational_description=cytochrome P450%2C family 703%2C subfamily A%2C polypeptide 2 (CYP703A2)%3B FUNCTIONS IN: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C NADH or NADPH as one donor%2C and incorporation of one atom of oxygen%2C oxygen binding%3B INVOLVED IN: medium-chain fatty acid metabolic process%2C pollen wall assembly%2C medium-chain fatty acid biosynthetic process%2C sporopollenin biosynthetic process%2C pollen exine formation%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 6 plant structures%3B EXPRESSED DURING: petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128)%2C Cytochrome P450%2C conserved site (InterPro:IPR017972)%2C Cytochrome P450%2C E-class%2C group I (InterPro:IPR002401)%3B BEST Arabidopsis thaliana protein match is: Cytochrome P450 superfamily protein (TAIR:AT5G07990.1)%3B Has 29652 Blast hits to 29399 proteins in 1569 species: Archae - 44%3B Bacteria - 2451%3B Metazoa - 11172%3B Fungi - 6019%3B Plants - 9091%3B Viruses - 3%3B Other Eukaryotes - 872 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12372144, PMID:15703057, PMID:16258015, PMID:16831835, PMID:16920875, PMID:17496121, PMID:18036205, PMID:18433503, PMID:19218397, PMID:19700560, PMID:20118226, PMID:20736450, PMID:21223384, PMID:21849515, PMID:23252839, locus:2035267; locus_type=protein_coding
AT1G01290.1	chr1:000114299	0.0	W/114299-114433,114619-115296	AT1G01290.1 CDS AT1G01290 ID=AT1G01290.1; Parent=AT1G01290; Name=AT1G01290.1; Note=cofactor of nitrate reductase and xanthine dehydrogenase 3; curator_summary=COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 3. Encodes a protein involved in molybdenum cofactor biosynthesis. Homologous to E.coli MoaC. Expression is low in all tissues examined%2C except in roots. Appears to have targeting signals for chloroplast or mitochondria; conf_class=2; symbol=CNX3; full_name=cofactor of nitrate reductase and xanthine dehydrogenase 3; computational_description=cofactor of nitrate reductase and xanthine dehydrogenase 3 (CNX3)%3B CONTAINS InterPro DOMAIN/s: Molybdopterin cofactor biosynthesis C (MoaC) domain (InterPro:IPR002820)%3B Has 5242 Blast hits to 5240 proteins in 1916 species: Archae - 213%3B Bacteria - 3669%3B Metazoa - 104%3B Fungi - 75%3B Plants - 45%3B Viruses - 0%3B Other Eukaryotes - 1136 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:7890743, PMID:14576160, PMID:15703057, PMID:18315867, PMID:18650403, PMID:20164445, locus:2035277; locus_type=protein_coding
AT1G01290.2	chr1:000114299	0.0	W/114299-114433,114619-115296	AT1G01290.2 CDS AT1G01290 ID=AT1G01290.2; Parent=AT1G01290; Name=AT1G01290.2; Note=cofactor of nitrate reductase and xanthine dehydrogenase 3; curator_summary=COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 3. Encodes a protein involved in molybdenum cofactor biosynthesis. Homologous to E.coli MoaC. Expression is low in all tissues examined%2C except in roots. Appears to have targeting signals for chloroplast or mitochondria; conf_class=2; symbol=CNX3; full_name=cofactor of nitrate reductase and xanthine dehydrogenase 3; computational_description=cofactor of nitrate reductase and xanthine dehydrogenase 3 (CNX3)%3B CONTAINS InterPro DOMAIN/s: Molybdopterin cofactor biosynthesis C (MoaC) domain (InterPro:IPR002820)%3B Has 5242 Blast hits to 5240 proteins in 1916 species: Archae - 213%3B Bacteria - 3669%3B Metazoa - 104%3B Fungi - 75%3B Plants - 45%3B Viruses - 0%3B Other Eukaryotes - 1136 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:7890743, PMID:14576160, PMID:15703057, PMID:18315867, PMID:18650403, PMID:20164445, locus:2035277; locus_type=protein_coding
AT1G01300.1	chr1:000117065	0.0	W/117065-118522	AT1G01300.1 CDS AT1G01300 ID=AT1G01300.1; Parent=AT1G01300; Name=AT1G01300.1; Note=Eukaryotic aspartyl protease family protein; conf_class=1; computational_description=Eukaryotic aspartyl protease family protein%3B FUNCTIONS IN: aspartic-type endopeptidase activity%3B INVOLVED IN: proteolysis%2C response to karrikin%3B LOCATED IN: membrane%2C plant-type cell wall%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109)%2C Peptidase aspartic%2C catalytic (InterPro:IPR009007)%2C Peptidase A1 (InterPro:IPR001461)%3B BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT3G61820.1)%3B Has 3898 Blast hits to 3871 proteins in 332 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1165%3B Fungi - 579%3B Plants - 1953%3B Viruses - 0%3B Other Eukaryotes - 201 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14697270, PMID:15295017, PMID:15695462, PMID:15531708, PMID:15703057, PMID:15755812, PMID:16287169, PMID:18650403, PMID:20351290, PMID:23289948, locus:2035297; locus_type=protein_coding
AT1G01305.1	chr1:000119429	0.0	W/119429-119854	AT1G01305.1 CDS AT1G01305 ID=AT1G01305.1; Parent=AT1G01305; Name=AT1G01305.1; Note=hypothetical protein; conf_class=1; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:20032078, locus:4515102485; locus_type=protein_coding
AT1G01310.1	chr1:000120221	0.0	W/120221-120946	AT1G01310.1 CDS AT1G01310 ID=AT1G01310.1; Parent=AT1G01310; Name=AT1G01310.1; Note=CAP (Cysteine-rich secretory proteins%2C Antigen 5%2C and Pathogenesis-related 1 protein) superfamily protein; conf_class=1; computational_description=CAP (Cysteine-rich secretory proteins%2C Antigen 5%2C and Pathogenesis-related 1 protein) superfamily protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: extracellular region%3B EXPRESSED IN: 6 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Allergen V5/Tpx-1 related%2C conserved site (InterPro:IPR018244)%2C Allergen V5/Tpx-1 related (InterPro:IPR001283)%2C Ves allergen (InterPro:IPR002413)%2C SCP-like extracellular (InterPro:IPR014044)%3B BEST Arabidopsis thaliana protein match is: CAP (Cysteine-rich secretory proteins%2C Antigen 5%2C and Pathogenesis-related 1 protein) superfamily protein (TAIR:AT3G09590.1)%3B Has 2987 Blast hits to 2892 proteins in 368 species: Archae - 0%3B Bacteria - 64%3B Metazoa - 1591%3B Fungi - 333%3B Plants - 892%3B Viruses - 0%3B Other Eukaryotes - 107 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15703057, PMID:18775970, locus:2035317; locus_type=protein_coding
AT1G01320.1	chr1:000121582	0.0	C/121582-123501,123579-123669,123785-123897,123992-124123,124211-124394,124499-124632,124714-124818,124921-125046,125134-125226,125329-125655,125742-125843,125936-125998,126076-126589,126686-126840,126935-127453,127532-127573,127651-127782,127868-127935,128028-128312,128479-128551,128968-129060,129853-129914,130039-130099	AT1G01320.1 CDS AT1G01320 ID=AT1G01320.1; Parent=AT1G01320; Name=AT1G01320.1; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; conf_class=6; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B FUNCTIONS IN: binding%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990)%2C Tetratricopeptide repeat-containing (InterPro:IPR013026)%2C Tetratricopeptide repeat (InterPro:IPR019734)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G28080.1)%3B Has 12123 Blast hits to 4846 proteins in 494 species: Archae - 106%3B Bacteria - 3214%3B Metazoa - 4973%3B Fungi - 1823%3B Plants - 555%3B Viruses - 79%3B Other Eukaryotes - 1373 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:15642518, PMID:15632092, PMID:15703057, PMID:18650403, PMID:18775970, locus:2035327; locus_type=protein_coding
AT1G01320.2	chr1:000121582	0.0	C/121582-123495,123579-123669,123785-123897,123992-124123,124211-124394,124499-124632,124714-124818,124921-125022,125134-125226,125329-125655,125742-125843,125936-125998,126076-126589,126686-126840,126935-127453,127532-127573,127651-127782,127868-127935,128028-128312,128479-128551,128968-129060,129853-129914,130039-130099	AT1G01320.2 CDS AT1G01320 ID=AT1G01320.2; Parent=AT1G01320; Name=AT1G01320.2; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; conf_class=4; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B FUNCTIONS IN: binding%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990)%2C Tetratricopeptide repeat-containing (InterPro:IPR013026)%2C Tetratricopeptide repeat (InterPro:IPR019734)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G28080.1)%3B Has 12123 Blast hits to 4846 proteins in 494 species: Archae - 106%3B Bacteria - 3214%3B Metazoa - 4973%3B Fungi - 1823%3B Plants - 555%3B Viruses - 79%3B Other Eukaryotes - 1373 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:15642518, PMID:15632092, PMID:15703057, PMID:18650403, PMID:18775970, locus:2035327; locus_type=protein_coding
AT1G01320.3	chr1:000121582	0.0	C/121582-123501,123579-123669,123785-123897,123992-124123,124211-124394,124499-124632,124714-124818,124921-125022,125134-125226,125329-125655,125742-125843,125936-125998,126076-126589,126686-126840,126935-127453,127532-127573,127651-127782,127868-127935,128028-128312,128479-128551,128968-129060,129853-129914,130039-130099	AT1G01320.3 CDS AT1G01320 ID=AT1G01320.3; Parent=AT1G01320; Name=AT1G01320.3; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B FUNCTIONS IN: binding%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990)%2C Tetratricopeptide repeat-containing (InterPro:IPR013026)%2C Tetratricopeptide repeat (InterPro:IPR019734)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G28080.1)%3B Has 12123 Blast hits to 4846 proteins in 494 species: Archae - 106%3B Bacteria - 3214%3B Metazoa - 4973%3B Fungi - 1823%3B Plants - 555%3B Viruses - 79%3B Other Eukaryotes - 1373 (source: NCBI BLink).; Dbxref=PMID:15642518, PMID:15632092, PMID:15703057, PMID:18650403, PMID:18775970, locus:2035327; locus_type=protein_coding
AT1G01335.1	chr1:000130736	0.0	W/130736-130858	AT1G01335.1 CDS AT1G01335 ID=AT1G01335.1; Parent=AT1G01335; Name=AT1G01335.1; Note=auxin-responsive endogenous peptide protein; Dbxref=UniProt:P0DKH9; locus_type=protein_coding
AT1G01340.1	chr1:000132414	0.0	C/132414-132744,132824-133218,133303-133539,133641-133752,133911-134206,134289-134501,134582-135118	AT1G01340.1 CDS AT1G01340 ID=AT1G01340.1; Parent=AT1G01340; Name=AT1G01340.1; Note=cyclic nucleotide gated channel 10; curator_summary=member of Cyclic nucleotide gated channel family; conf_class=1; symbol=CNGC10; Alias=ACBK1, ATCNGC10, cyclic nucleotide gated channel 10; full_name=cyclic nucleotide gated channel 10; computational_description=cyclic nucleotide gated channel 10 (CNGC10)%3B FUNCTIONS IN: ion channel activity%2C cyclic nucleotide binding%2C calmodulin binding%3B INVOLVED IN: ion transport%2C transmembrane transport%3B LOCATED IN: membrane%3B EXPRESSED IN: 14 plant structures%3B EXPRESSED DURING: 10 growth stages%3B CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595)%2C Ion transport (InterPro:IPR005821)%2C Cyclic nucleotide-binding-like (InterPro:IPR018490)%2C RmlC-like jelly roll fold (InterPro:IPR014710)%2C IQ calmodulin-binding region (InterPro:IPR000048)%3B BEST Arabidopsis thaliana protein match is: cyclic nucleotide-gated channel 13 (TAIR:AT4G01010.1)%3B Has 3364 Blast hits to 3209 proteins in 253 species: Archae - 0%3B Bacteria - 35%3B Metazoa - 1554%3B Fungi - 48%3B Plants - 1027%3B Viruses - 0%3B Other Eukaryotes - 700 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11782485, PMID:11500563, PMID:12818663, PMID:16449377, PMID:16944199, PMID:17149585, PMID:17877833, PMID:18650403, PMID:18775970, PMID:18823330, PMID:20210874, PMID:25416933, locus:2035347; locus_type=protein_coding
AT1G01340.2	chr1:000132414	0.0	C/132414-132744,132824-133218,133303-133539,133641-133752,133911-134206,134289-134501,134582-135104,135188-135216	AT1G01340.2 CDS AT1G01340 ID=AT1G01340.2; Parent=AT1G01340; Name=AT1G01340.2; Note=cyclic nucleotide gated channel 10; curator_summary=member of Cyclic nucleotide gated channel family; conf_class=6; symbol=CNGC10; Alias=ACBK1, ATCNGC10, cyclic nucleotide gated channel 10; full_name=cyclic nucleotide gated channel 10; computational_description=cyclic nucleotide gated channel 10 (CNGC10)%3B FUNCTIONS IN: ion channel activity%2C cyclic nucleotide binding%2C calmodulin binding%3B INVOLVED IN: ion transport%2C transmembrane transport%3B LOCATED IN: membrane%3B EXPRESSED IN: 14 plant structures%3B EXPRESSED DURING: 10 growth stages%3B CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595)%2C Ion transport (InterPro:IPR005821)%2C Cyclic nucleotide-binding-like (InterPro:IPR018490)%2C RmlC-like jelly roll fold (InterPro:IPR014710)%2C IQ calmodulin-binding region (InterPro:IPR000048)%3B BEST Arabidopsis thaliana protein match is: cyclic nucleotide-gated channel 13 (TAIR:AT4G01010.1)%3B Has 3364 Blast hits to 3209 proteins in 253 species: Archae - 0%3B Bacteria - 35%3B Metazoa - 1554%3B Fungi - 48%3B Plants - 1027%3B Viruses - 0%3B Other Eukaryotes - 700 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:11782485, PMID:11500563, PMID:12818663, PMID:16449377, PMID:16944199, PMID:17149585, PMID:17877833, PMID:18650403, PMID:18775970, PMID:18823330, PMID:20210874, PMID:25416933, locus:2035347; locus_type=protein_coding
AT1G01350.1	chr1:000136732	0.0	W/136732-136816,136935-137758,137848-137970	AT1G01350.1 CDS AT1G01350 ID=AT1G01350.1; Parent=AT1G01350; Name=AT1G01350.1; Note=Zinc finger (CCCH-type/C3HC4-type RING finger) family protein; conf_class=2; computational_description=Zinc finger (CCCH-type/C3HC4-type RING finger) family protein%3B FUNCTIONS IN: zinc ion binding%2C nucleic acid binding%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C CCCH-type (InterPro:IPR000571)%2C Zinc finger%2C RING-type%2C conserved site (InterPro:IPR017907)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%3B BEST Arabidopsis thaliana protein match is: Zinc finger (CCCH-type/C3HC4-type RING finger) family protein (TAIR:AT5G06420.2)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12023303, PMID:11983057, PMID:17335513, PMID:18221561, PMID:18650403, PMID:20736450, locus:2035377; locus_type=protein_coding
AT1G01355.1	chr1:000138513	0.0	W/138513-138541,138597-138778,138863-139114,139203-139345,139488-139568	AT1G01355.1 CDS AT1G01355 ID=AT1G01355.1; Parent=AT1G01355; Name=AT1G01355.1; Note=Putative endonuclease or glycosyl hydrolase; conf_class=6; computational_description=Putative endonuclease or glycosyl hydrolase%3B FUNCTIONS IN: zinc ion binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: intracellular%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C C2H2-type (InterPro:IPR007087)%3B BEST Arabidopsis thaliana protein match is: Putative endonuclease or glycosyl hydrolase (TAIR:AT5G35640.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=**; Dbxref=locus:4515102486; locus_type=protein_coding
AT1G01355.3	chr1:000138513	0.0	W/138513-138541,138597-138778,138875-139114,139203-139345,139488-139568	AT1G01355.3 CDS AT1G01355 ID=AT1G01355.3; Parent=AT1G01355; Name=AT1G01355.3; Note=Putative endonuclease or glycosyl hydrolase; computational_description=Putative endonuclease or glycosyl hydrolase%3B FUNCTIONS IN: zinc ion binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: intracellular%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C C2H2-type (InterPro:IPR007087)%3B BEST Arabidopsis thaliana protein match is: Putative endonuclease or glycosyl hydrolase (TAIR:AT5G35640.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=locus:4515102486; locus_type=protein_coding
AT1G01355.2	chr1:000138722	0.0	W/138722-138778,138875-138914,138989-139114,139203-139345,139488-139568	AT1G01355.2 CDS AT1G01355 ID=AT1G01355.2; Parent=AT1G01355; Name=AT1G01355.2; Note=Putative endonuclease or glycosyl hydrolase; computational_description=Putative endonuclease or glycosyl hydrolase%3B FUNCTIONS IN: zinc ion binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: intracellular%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C C2H2-type (InterPro:IPR007087)%3B BEST Arabidopsis thaliana protein match is: Putative endonuclease or glycosyl hydrolase (TAIR:AT5G35640.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=locus:4515102486; locus_type=protein_coding
AT1G01360.1	chr1:000142138	0.0	W/142138-142281,142424-142639,142711-142914	AT1G01360.1 CDS AT1G01360 ID=AT1G01360.1; Parent=AT1G01360; Name=AT1G01360.1; Note=regulatory component of ABA receptor 1; curator_summary=Encodes RCAR1 (regulatory components of ABA receptor). Interacts with and regulates the type 2C protein phosphatases (PP2Cs) ABI1 and ABI2. Functions as abscisic acid sensor.; conf_class=2; symbol=RCAR1; Alias=PYL9, PYRABACTIN RESISTANCE 1-LIKE 9; full_name=regulatory component of ABA receptor 1; computational_description=regulatory component of ABA receptor 1 (RCAR1)%3B CONTAINS InterPro DOMAIN/s: Polyketide cyclase/dehydrase (InterPro:IPR019587)%3B BEST Arabidopsis thaliana protein match is: PYR1-like 7 (TAIR:AT4G01026.1)%3B Has 395 Blast hits to 395 proteins in 28 species: Archae - 0%3B Bacteria - 3%3B Metazoa - 0%3B Fungi - 0%3B Plants - 392%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15604721, PMID:18775970, PMID:19407143, PMID:19407142, PMID:19769575, PMID:19874541, PMID:20383021, PMID:21586729, PMID:21885535, PMID:21976481, PMID:22251383, PMID:22829320, PMID:23370718, PMID:23630285, PMID:23844015, PMID:24563205, PMID:24645846, PMID:24828206, locus:2035227; locus_type=protein_coding
AT1G01370.1	chr1:000143773	0.0	W/143773-143824,143934-143977,144064-144109,144193-144227,144315-144351,144447-144559,144927-145004,145132-145207,145345-145400	AT1G01370.1 CDS AT1G01370 ID=AT1G01370.1; Parent=AT1G01370; Name=AT1G01370.1; Note=Histone superfamily protein; curator_summary=Encodes a centromere-identifying protein histone H3 variant. Localized at centromeres in both mitotic and meiotic cells.; conf_class=1; symbol=HTR12; computational_description=HTR12%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: double fertilization forming a zygote and endosperm%3B LOCATED IN: chromosome%2C centromeric region%2C nucleus%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164)%2C Histone-fold (InterPro:IPR009072)%2C Histone core (InterPro:IPR007125)%3B BEST Arabidopsis thaliana protein match is: male-gamete-specific histone H3 (TAIR:AT1G19890.1)%3B Has 14361 Blast hits to 14354 proteins in 7190 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 10494%3B Fungi - 2020%3B Plants - 1256%3B Viruses - 0%3B Other Eukaryotes - 591 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12034896, PMID:12663558, PMID:16331414, PMID:17033808, PMID:17028205, PMID:17138549, PMID:17242155, PMID:17555967, PMID:18239133, PMID:18495926, PMID:15861308, PMID:20084454, PMID:20336146, PMID:20628040, PMID:20501974, PMID:20933291, PMID:21190064, PMID:21695238, PMID:21635586, PMID:21771121, PMID:21842230, PMID:22476443, PMID:23525657, PMID:24014547, PMID:24801345, PMID:25344531, PMID:25622028, locus:2035252; locus_type=protein_coding
AT1G01370.2	chr1:000143773	0.0	W/143773-143824,143934-143977,144064-144109,144193-144227,144315-144351,144447-144559,144927-145004,145132-145207,145345-145400	AT1G01370.2 CDS AT1G01370 ID=AT1G01370.2; Parent=AT1G01370; Name=AT1G01370.2; Note=Histone superfamily protein; curator_summary=Encodes a centromere-identifying protein histone H3 variant. Localized at centromeres in both mitotic and meiotic cells.; conf_class=2; symbol=HTR12; computational_description=HTR12%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: double fertilization forming a zygote and endosperm%3B LOCATED IN: chromosome%2C centromeric region%2C nucleus%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164)%2C Histone-fold (InterPro:IPR009072)%2C Histone core (InterPro:IPR007125)%3B BEST Arabidopsis thaliana protein match is: male-gamete-specific histone H3 (TAIR:AT1G19890.1)%3B Has 14361 Blast hits to 14354 proteins in 7190 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 10494%3B Fungi - 2020%3B Plants - 1256%3B Viruses - 0%3B Other Eukaryotes - 591 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12034896, PMID:12663558, PMID:16331414, PMID:17033808, PMID:17028205, PMID:17138549, PMID:17242155, PMID:17555967, PMID:18239133, PMID:18495926, PMID:15861308, PMID:20084454, PMID:20336146, PMID:20628040, PMID:20501974, PMID:20933291, PMID:21190064, PMID:21695238, PMID:21635586, PMID:21771121, PMID:21842230, PMID:22476443, PMID:23525657, PMID:24014547, PMID:24801345, PMID:25344531, PMID:25622028, locus:2035252; locus_type=protein_coding
AT1G01370.3	chr1:000143773	0.0	W/143773-143824,143934-143977,144064-144109,144193-144227,144315-144351,144447-144559,144927-145004,145132-145207,145345-145400	AT1G01370.3 CDS AT1G01370 ID=AT1G01370.3; Parent=AT1G01370; Name=AT1G01370.3; Note=Histone superfamily protein; symbol=HTR12; Dbxref=PMID:12034896, PMID:12663558, PMID:16331414, PMID:17033808, PMID:17028205, PMID:17138549, PMID:17242155, PMID:17555967, PMID:18239133, PMID:18495926, PMID:15861308, PMID:20084454, PMID:20336146, PMID:20628040, PMID:20501974, PMID:20933291, PMID:21190064, PMID:21695238, PMID:21635586, PMID:21771121, PMID:21842230, PMID:22476443, PMID:23525657, PMID:24014547, PMID:24801345, PMID:25344531, PMID:25622028, locus:2035252; curator_summary=Encodes a centromere-identifying protein histone H3 variant. Localized at centromeres in both mitotic and meiotic cells.; computational_description=HTR12%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: double fertilization forming a zygote and endosperm%3B LOCATED IN: chromosome%2C centromeric region%2C nucleus%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164)%2C Histone-fold (InterPro:IPR009072)%2C Histone core (InterPro:IPR007125)%3B BEST Arabidopsis thaliana protein match is: male-gamete-specific histone H3 (TAIR:AT1G19890.1)%3B Has 14361 Blast hits to 14354 proteins in 7190 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 10494%3B Fungi - 2020%3B Plants - 1256%3B Viruses - 0%3B Other Eukaryotes - 591 (source: NCBI BLink).; locus_type=protein_coding
AT1G01370.4	chr1:000143773	0.0	W/143773-143824,143934-143977,144064-144109,144193-144227,144315-144351,144447-144559,144927-145004,145132-145207,145345-145400	AT1G01370.4 CDS AT1G01370 ID=AT1G01370.4; Parent=AT1G01370; Name=AT1G01370.4; Note=Histone superfamily protein; symbol=HTR12; Dbxref=PMID:12034896, PMID:12663558, PMID:16331414, PMID:17033808, PMID:17028205, PMID:17138549, PMID:17242155, PMID:17555967, PMID:18239133, PMID:18495926, PMID:15861308, PMID:20084454, PMID:20336146, PMID:20628040, PMID:20501974, PMID:20933291, PMID:21190064, PMID:21695238, PMID:21635586, PMID:21771121, PMID:21842230, PMID:22476443, PMID:23525657, PMID:24014547, PMID:24801345, PMID:25344531, PMID:25622028, locus:2035252; curator_summary=Encodes a centromere-identifying protein histone H3 variant. Localized at centromeres in both mitotic and meiotic cells.; computational_description=HTR12%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: double fertilization forming a zygote and endosperm%3B LOCATED IN: chromosome%2C centromeric region%2C nucleus%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164)%2C Histone-fold (InterPro:IPR009072)%2C Histone core (InterPro:IPR007125)%3B BEST Arabidopsis thaliana protein match is: male-gamete-specific histone H3 (TAIR:AT1G19890.1)%3B Has 14361 Blast hits to 14354 proteins in 7190 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 10494%3B Fungi - 2020%3B Plants - 1256%3B Viruses - 0%3B Other Eukaryotes - 591 (source: NCBI BLink).; locus_type=protein_coding
AT1G01380.1	chr1:000147267	0.0	W/147267-147333,147452-147539,147644-147740	AT1G01380.1 CDS AT1G01380 ID=AT1G01380.1; Parent=AT1G01380; Name=AT1G01380.1; Note=Homeodomain-like superfamily protein; curator_summary=ETC1 is involved in trichome and root hair patterning in Arabidopsis.; conf_class=2; symbol=ETC1; full_name=ENHANCER OF TRY AND CPC 1; computational_description=ENHANCER OF TRY AND CPC 1 (ETC1)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%2C regulation of transcription%3B EXPRESSED IN: shoot apex%2C hypocotyl%2C root%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C Homeodomain-related (InterPro:IPR012287)%2C Myb transcription factor (InterPro:IPR015495)%3B BEST Arabidopsis thaliana protein match is: CAPRICE-like MYB3 (TAIR:AT4G01060.1)%3B Has 2220 Blast hits to 2220 proteins in 165 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 2207%3B Viruses - 0%3B Other Eukaryotes - 13 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:15063185, PMID:15967776, PMID:17885086, PMID:17931617, PMID:18305006, PMID:18434419, PMID:18644155, PMID:19626137, PMID:19336467, PMID:22253603, PMID:22489163, PMID:22995285, PMID:23326563, PMID:23432399, PMID:23603939, PMID:23796522, PMID:24130712, locus:2035287; locus_type=protein_coding
AT1G01380.2	chr1:000147267	0.0	W/147267-147333,147452-147567	AT1G01380.2 CDS AT1G01380 ID=AT1G01380.2; Parent=AT1G01380; Name=AT1G01380.2; Note=Homeodomain-like superfamily protein; symbol=ETC1; full_name=ENHANCER OF TRY AND CPC 1; curator_summary=ETC1 is involved in trichome and root hair patterning in Arabidopsis.; computational_description=ENHANCER OF TRY AND CPC 1 (ETC1)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%2C regulation of transcription%3B EXPRESSED IN: shoot apex%2C hypocotyl%2C root%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C Homeodomain-related (InterPro:IPR012287)%2C Myb transcription factor (InterPro:IPR015495)%3B BEST Arabidopsis thaliana protein match is: CAPRICE-like MYB3 (TAIR:AT4G01060.1)%3B Has 2220 Blast hits to 2220 proteins in 165 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 2207%3B Viruses - 0%3B Other Eukaryotes - 13 (source: NCBI BLink).; Dbxref=PMID:11118137, PMID:15063185, PMID:15967776, PMID:17885086, PMID:17931617, PMID:18305006, PMID:18434419, PMID:18644155, PMID:19626137, PMID:19336467, PMID:22253603, PMID:22489163, PMID:22995285, PMID:23326563, PMID:23432399, PMID:23603939, PMID:23796522, PMID:24130712, locus:2035287; locus_type=protein_coding
AT1G01380.3	chr1:000147267	0.0	W/147267-147333,147452-147528,147644-147694	AT1G01380.3 CDS AT1G01380 ID=AT1G01380.3; Parent=AT1G01380; Name=AT1G01380.3; Note=Homeodomain-like superfamily protein; symbol=ETC1; full_name=ENHANCER OF TRY AND CPC 1; curator_summary=ETC1 is involved in trichome and root hair patterning in Arabidopsis.; computational_description=ENHANCER OF TRY AND CPC 1 (ETC1)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%2C regulation of transcription%3B EXPRESSED IN: shoot apex%2C hypocotyl%2C root%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C Homeodomain-related (InterPro:IPR012287)%2C Myb transcription factor (InterPro:IPR015495)%3B BEST Arabidopsis thaliana protein match is: CAPRICE-like MYB3 (TAIR:AT4G01060.1)%3B Has 2220 Blast hits to 2220 proteins in 165 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 2207%3B Viruses - 0%3B Other Eukaryotes - 13 (source: NCBI BLink).; Dbxref=PMID:11118137, PMID:15063185, PMID:15967776, PMID:17885086, PMID:17931617, PMID:18305006, PMID:18434419, PMID:18644155, PMID:19626137, PMID:19336467, PMID:22253603, PMID:22489163, PMID:22995285, PMID:23326563, PMID:23432399, PMID:23603939, PMID:23796522, PMID:24130712, locus:2035287; locus_type=protein_coding
AT1G01390.1	chr1:000148319	0.0	C/148319-149761	AT1G01390.1 CDS AT1G01390 ID=AT1G01390.1; Parent=AT1G01390; Name=AT1G01390.1; Note=UDP-Glycosyltransferase superfamily protein; conf_class=1; computational_description=UDP-Glycosyltransferase superfamily protein%3B FUNCTIONS IN: UDP-glycosyltransferase activity%2C transferase activity%2C transferring glycosyl groups%3B INVOLVED IN: metabolic process%3B EXPRESSED IN: 7 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213)%3B BEST Arabidopsis thaliana protein match is: UDP-glucosyl transferase 72B3 (TAIR:AT1G01420.1)%3B Has 7970 Blast hits to 7908 proteins in 429 species: Archae - 0%3B Bacteria - 359%3B Metazoa - 2438%3B Fungi - 37%3B Plants - 5024%3B Viruses - 48%3B Other Eukaryotes - 64 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:18252844, PMID:20736450, locus:2035272; locus_type=protein_coding
AT1G01390.2	chr1:000148319	0.0	C/148319-149812	AT1G01390.2 CDS AT1G01390 ID=AT1G01390.2; Parent=AT1G01390; Name=AT1G01390.2; Note=UDP-Glycosyltransferase superfamily protein; computational_description=UDP-Glycosyltransferase superfamily protein%3B FUNCTIONS IN: UDP-glycosyltransferase activity%2C transferase activity%2C transferring glycosyl groups%3B INVOLVED IN: metabolic process%3B EXPRESSED IN: 7 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213)%3B BEST Arabidopsis thaliana protein match is: UDP-glucosyl transferase 72B3 (TAIR:AT1G01420.1)%3B Has 7970 Blast hits to 7908 proteins in 429 species: Archae - 0%3B Bacteria - 359%3B Metazoa - 2438%3B Fungi - 37%3B Plants - 5024%3B Viruses - 48%3B Other Eukaryotes - 64 (source: NCBI BLink).; Dbxref=PMID:18252844, PMID:20736450, locus:2035272; locus_type=protein_coding
AT1G01400.1	chr1:000151158	0.0	C/151158-151298,151393-151731,151932-152002,152086-152149	AT1G01400.1 CDS AT1G01400 ID=AT1G01400.1; Parent=AT1G01400; Name=AT1G01400.1; Note=hypothetical protein; conf_class=1; computational_description=unknown protein%3B Has 21 Blast hits to 21 proteins in 8 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 2%3B Fungi - 1%3B Plants - 13%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14730060, locus:2035292; locus_type=protein_coding
AT1G01410.1	chr1:000153113	0.0	W/153113-154198	AT1G01410.1 CDS AT1G01410 ID=AT1G01410.1; Parent=AT1G01410; Name=AT1G01410.1; Note=pumilio 22; curator_summary=Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.; conf_class=9; symbol=PUM22; Alias=APUM22, pumilio 22; full_name=pumilio 22; computational_description=pumilio 22 (PUM22)%3B FUNCTIONS IN: RNA binding%2C binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313)%2C Armadillo-like helical (InterPro:IPR011989)%2C Armadillo-type fold (InterPro:IPR016024)%3B BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G64490.1)%3B Has 304 Blast hits to 271 proteins in 75 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1%3B Fungi - 65%3B Plants - 186%3B Viruses - 0%3B Other Eukaryotes - 52 (source: NCBI BLink).; conf_rating=*; Dbxref=PMID:19682068, PMID:20214804, locus:2035312; locus_type=protein_coding
AT1TE00470	chr1:000154331	0.0	C/154331-154418	AT1TE00470 transposable_element AT1TE00470 ID=AT1TE00470; Name=AT1TE00470; Alias=ATLINE1_3A
AT1G01420.1	chr1:000154566	0.0	C/154566-156011	AT1G01420.1 CDS AT1G01420 ID=AT1G01420.1; Parent=AT1G01420; Name=AT1G01420.1; Note=UDP-glucosyl transferase 72B3; conf_class=1; symbol=UGT72B3; full_name=UDP-glucosyl transferase 72B3; computational_description=UDP-glucosyl transferase 72B3 (UGT72B3)%3B FUNCTIONS IN: quercetin 3-O-glucosyltransferase activity%2C UDP-glycosyltransferase activity%2C transferase activity%2C transferring glycosyl groups%3B INVOLVED IN: metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 11 plant structures%3B EXPRESSED DURING: LP.04 four leaves visible%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213)%3B BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT1G01390.1)%3B Has 7961 Blast hits to 7896 proteins in 480 species: Archae - 0%3B Bacteria - 474%3B Metazoa - 2294%3B Fungi - 32%3B Plants - 5027%3B Viruses - 70%3B Other Eukaryotes - 64 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12954621, PMID:15352060, PMID:16814332, PMID:16913859, PMID:20736450, locus:2035332; locus_type=protein_coding
AT1G01420.2	chr1:000154566	0.0	C/154566-156020	AT1G01420.2 CDS AT1G01420 ID=AT1G01420.2; Parent=AT1G01420; Name=AT1G01420.2; Note=UDP-glucosyl transferase 72B3; symbol=UGT72B3; full_name=UDP-glucosyl transferase 72B3; computational_description=UDP-glucosyl transferase 72B3 (UGT72B3)%3B FUNCTIONS IN: quercetin 3-O-glucosyltransferase activity%2C UDP-glycosyltransferase activity%2C transferase activity%2C transferring glycosyl groups%3B INVOLVED IN: metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 11 plant structures%3B EXPRESSED DURING: LP.04 four leaves visible%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213)%3B BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT1G01390.1)%3B Has 7961 Blast hits to 7896 proteins in 480 species: Archae - 0%3B Bacteria - 474%3B Metazoa - 2294%3B Fungi - 32%3B Plants - 5027%3B Viruses - 70%3B Other Eukaryotes - 64 (source: NCBI BLink).; Dbxref=PMID:12954621, PMID:15352060, PMID:16814332, PMID:16913859, PMID:20736450, locus:2035332; locus_type=protein_coding
AT1G01430.1	chr1:000156953	0.0	C/156953-157756,157829-158112,158254-158536	AT1G01430.1 CDS AT1G01430 ID=AT1G01430.1; Parent=AT1G01430; Name=AT1G01430.1; Note=TRICHOME BIREFRINGENCE-LIKE 25; curator_summary=Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members%2C two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose%2C presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff %26 Wolf Scheible%2C 2010%2C personal communication).; conf_class=2; symbol=TBL25; full_name=TRICHOME BIREFRINGENCE-LIKE 25; computational_description=TRICHOME BIREFRINGENCE-LIKE 25 (TBL25)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231%2C plant (InterPro:IPR004253)%3B BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 26 (TAIR:AT4G01080.1)%3B Has 1353 Blast hits to 1335 proteins in 35 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 6%3B Plants - 1340%3B Viruses - 0%3B Other Eukaryotes - 7 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17316173, PMID:18650403, PMID:20388664, PMID:20657172, PMID:20736450, locus:2035342; locus_type=protein_coding
AT1G01440.1	chr1:000159935	0.0	C/159935-159992,160079-160302,160418-160478,160568-162219	AT1G01440.1 CDS AT1G01440 ID=AT1G01440.1; Parent=AT1G01440; Name=AT1G01440.1; Note=hypothetical protein (DUF3133); conf_class=2; computational_description=Protein of unknown function (DUF3133)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3133 (InterPro:IPR021480)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3133) (TAIR:AT4G01090.1)%3B Has 702 Blast hits to 662 proteins in 107 species: Archae - 0%3B Bacteria - 15%3B Metazoa - 235%3B Fungi - 59%3B Plants - 328%3B Viruses - 0%3B Other Eukaryotes - 65 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, locus:2035307; locus_type=protein_coding
AT1G01448.1	chr1:000163278	0.0	W/163278-166353	AT1G01448.1 antisense_lncRNA AT1G01448 ID=AT1G01448.1; Parent=AT1G01448; curator_summary=Potential natural antisense gene%2C locus overlaps with AT1G01450; Dbxref=locus:4010713406; Name=AT1G01448.1; description=Natural antisense transcript overlaps with AT1G01450; Note=Natural antisense transcript overlaps with AT1G01450; locus_type=antisense_long_noncoding_rna
AT1G01448.2	chr1:000163278	0.0	W/163278-166353	AT1G01448.2 antisense_lncRNA AT1G01448 ID=AT1G01448.2; Parent=AT1G01448; curator_summary=Potential natural antisense gene%2C locus overlaps with AT1G01450; Dbxref=locus:4010713406; Name=AT1G01448.2; description=Natural antisense transcript overlaps with AT1G01450; Note=Natural antisense transcript overlaps with AT1G01450; locus_type=antisense_long_noncoding_rna
AT1G01448.3	chr1:000163302	0.0	W/163302-166307	AT1G01448.3 antisense_lncRNA AT1G01448 ID=AT1G01448.3; Parent=AT1G01448; curator_summary=Potential natural antisense gene%2C locus overlaps with AT1G01450; Dbxref=locus:4010713406; Name=AT1G01448.3; description=Natural antisense transcript overlaps with AT1G01450; Note=Natural antisense transcript overlaps with AT1G01450; locus_type=antisense_long_noncoding_rna
AT1G01450.1	chr1:000164105	0.0	C/164105-165517	AT1G01450.1 CDS AT1G01450 ID=AT1G01450.1; Parent=AT1G01450; Name=AT1G01450.1; Note=Protein kinase superfamily protein; conf_class=4; computational_description=Protein kinase superfamily protein%3B FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity%2C kinase activity%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: pollen tube%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%3B BEST Arabidopsis thaliana protein match is: Protein kinase family protein (TAIR:AT1G64300.2)%3B Has 73829 Blast hits to 73194 proteins in 2427 species: Archae - 72%3B Bacteria - 7086%3B Metazoa - 29204%3B Fungi - 5761%3B Plants - 19826%3B Viruses - 200%3B Other Eukaryotes - 11680 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:16429265, PMID:18775970, locus:2025356; locus_type=protein_coding
AT1G01453.1	chr1:000166853	0.0	C/166853-166871,167014-167798	AT1G01453.1 CDS AT1G01453 ID=AT1G01453.1; Parent=AT1G01453; Name=AT1G01453.1; Note=late embryogenesis abundant hydroxyproline-rich glycoprotein family protein; conf_class=2; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01110.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:4515102487; locus_type=protein_coding
AT1G01453.2	chr1:000166929	0.0	C/166929-167798	AT1G01453.2 CDS AT1G01453 ID=AT1G01453.2; Parent=AT1G01453; Name=AT1G01453.2; Note=late embryogenesis abundant hydroxyproline-rich glycoprotein family protein; conf_class=1; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01110.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:4515102487; locus_type=protein_coding
AT1G01460.1	chr1:000169115	0.0	W/169115-169257,169347-169509,169600-169710,169806-169993,170071-170162,170266-170313,170412-170507,170622-170760,170851-171154	AT1G01460.1 CDS AT1G01460 ID=AT1G01460.1; Parent=AT1G01460; Name=AT1G01460.1; Note=Phosphatidylinositol-4-phosphate 5-kinase%2C core; curator_summary=Type I phosphatidylinositol-4-phosphate 5-kinase%2C subfamily A.; conf_class=4; symbol=PIPK11; computational_description=PIPK11%3B FUNCTIONS IN: 1-phosphatidylinositol-4-phosphate 5-kinase activity%2C phosphatidylinositol phosphate kinase activity%3B INVOLVED IN: phosphatidylinositol metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: sperm cell%2C sepal%2C male gametophyte%2C flower%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%3B CONTAINS InterPro DOMAIN/s: Phosphatidylinositol-4-phosphate 5-kinase%2C core%2C subgroup (InterPro:IPR016034)%2C Phosphatidylinositol-4-phosphate 5-kinase%2C core (InterPro:IPR002498)%3B BEST Arabidopsis thaliana protein match is: phosphatidylinositol phosphate kinase 10 (TAIR:AT4G01190.1)%3B Has 2109 Blast hits to 1621 proteins in 223 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 980%3B Fungi - 317%3B Plants - 416%3B Viruses - 0%3B Other Eukaryotes - 394 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:12226484, PMID:14500793, PMID:14666423, PMID:15040888, PMID:15949803, PMID:16291648, PMID:18775970, PMID:23505340, locus:2025336; locus_type=protein_coding
AT1G01470.1	chr1:000172295	0.0	C/172295-172544,172621-172826	AT1G01470.1 CDS AT1G01470 ID=AT1G01470.1; Parent=AT1G01470; Name=AT1G01470.1; Note=Late embryogenesis abundant protein; curator_summary=Encodes late-embryogenesis abundant protein whose mRNA levels are induced in response to wounding and light stress. Might be involved in protection against dessication.; conf_class=2; symbol=LEA14; Alias=AtLEA14, Arabidopsis thaliana Late Embryogenesis abundant 14, LEA1, LSR3, LIGHT STRESS-REGULATED 3; full_name=LATE EMBRYOGENESIS ABUNDANT 14; computational_description=LATE EMBRYOGENESIS ABUNDANT 14 (LEA14)%3B CONTAINS InterPro DOMAIN/s: Water stress and hypersensitive response domain (InterPro:IPR013990)%2C Late embryogenesis abundant protein%2C group 2 (InterPro:IPR004864)%3B BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant protein (TAIR:AT2G46140.1)%3B Has 340 Blast hits to 340 proteins in 93 species: Archae - 0%3B Bacteria - 10%3B Metazoa - 0%3B Fungi - 0%3B Plants - 329%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9666060, PMID:11683875, PMID:12102506, PMID:12068110, PMID:12172015, PMID:12169696, PMID:12481097, PMID:12785063, PMID:12969430, PMID:14982972, PMID:14973164, PMID:15165189, PMID:15448178, PMID:15341633, PMID:15494554, PMID:15743445, PMID:16121258, PMID:16463051, PMID:16623895, PMID:16617101, PMID:16608451, PMID:16920880, PMID:16972165, PMID:17030801, PMID:17316173, PMID:17346263, PMID:18318901, PMID:18441212, PMID:18599647, PMID:18552355, PMID:18552202, PMID:18650403, PMID:18805951, PMID:19656045, PMID:21398259, PMID:23715470, PMID:24841476, PMID:25005920, PMID:25450686, locus:2025346; locus_type=protein_coding
AT1G01480.1	chr1:000175862	0.0	W/175862-176032,176207-176338,176592-176752,177025-178051	AT1G01480.1 CDS AT1G01480 ID=AT1G01480.1; Parent=AT1G01480; Name=AT1G01480.1; Note=1-amino-cyclopropane-1-carboxylate synthase 2; curator_summary=a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase%2C EC 4.4.1.14) gene family%2C isolated from a flower-specific cDNA library.; conf_class=2; symbol=ACS2; Alias=AT-ACC2; full_name=1-amino-cyclopropane-1-carboxylate synthase 2; computational_description=1-amino-cyclopropane-1-carboxylate synthase 2 (ACS2)%3B CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176)%2C Aminotransferase%2C class I/classII (InterPro:IPR004839)%2C Pyridoxal phosphate-dependent transferase%2C major domain (InterPro:IPR015424)%2C Aminotransferases%2C class-I%2C pyridoxal-phosphate-binding site (InterPro:IPR004838)%2C Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (InterPro:IPR015422)%2C Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (InterPro:IPR015421)%3B BEST Arabidopsis thaliana protein match is: ACC synthase 1 (TAIR:AT3G61510.1)%3B Has 30194 Blast hits to 30192 proteins in 2936 species: Archae - 881%3B Bacteria - 20730%3B Metazoa - 650%3B Fungi - 807%3B Plants - 1338%3B Viruses - 0%3B Other Eukaryotes - 5788 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9011084, PMID:8566772, PMID:8219282, PMID:1438312, PMID:1357670, PMID:12968022, PMID:14983000, PMID:15466221, PMID:15699063, PMID:15539472, PMID:15960614, PMID:18182027, PMID:16028113, PMID:18705666, PMID:19752216, PMID:20659280, PMID:20736450, PMID:21533019, PMID:21645149, PMID:22761583, PMID:23979970, PMID:24148906, PMID:24837830, PMID:25082369, locus:2025361; locus_type=protein_coding
AT1G01480.2	chr1:000176607	0.0	W/176607-176752,177025-178051	AT1G01480.2 CDS AT1G01480 ID=AT1G01480.2; Parent=AT1G01480; Name=AT1G01480.2; Note=1-amino-cyclopropane-1-carboxylate synthase 2; curator_summary=a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase%2C EC 4.4.1.14) gene family%2C isolated from a flower-specific cDNA library.; conf_class=2; symbol=ACS2; Alias=AT-ACC2; full_name=1-amino-cyclopropane-1-carboxylate synthase 2; computational_description=1-amino-cyclopropane-1-carboxylate synthase 2 (ACS2)%3B CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176)%2C Aminotransferase%2C class I/classII (InterPro:IPR004839)%2C Pyridoxal phosphate-dependent transferase%2C major domain (InterPro:IPR015424)%2C Aminotransferases%2C class-I%2C pyridoxal-phosphate-binding site (InterPro:IPR004838)%2C Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (InterPro:IPR015422)%2C Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (InterPro:IPR015421)%3B BEST Arabidopsis thaliana protein match is: ACC synthase 1 (TAIR:AT3G61510.1)%3B Has 30194 Blast hits to 30192 proteins in 2936 species: Archae - 881%3B Bacteria - 20730%3B Metazoa - 650%3B Fungi - 807%3B Plants - 1338%3B Viruses - 0%3B Other Eukaryotes - 5788 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9011084, PMID:8566772, PMID:8219282, PMID:1438312, PMID:1357670, PMID:12968022, PMID:14983000, PMID:15466221, PMID:15699063, PMID:15539472, PMID:15960614, PMID:18182027, PMID:16028113, PMID:18705666, PMID:19752216, PMID:20659280, PMID:20736450, PMID:21533019, PMID:21645149, PMID:22761583, PMID:23979970, PMID:24148906, PMID:24837830, PMID:25082369, locus:2025361; locus_type=protein_coding
AT1G01490.1	chr1:000180401	0.0	C/180401-180852,181347-181422,182061-182066	AT1G01490.1 CDS AT1G01490 ID=AT1G01490.1; Parent=AT1G01490; Name=AT1G01490.1; Note=Heavy metal transport/detoxification superfamily protein; conf_class=2; computational_description=Heavy metal transport/detoxification superfamily protein %3B FUNCTIONS IN: metal ion binding%3B INVOLVED IN: metal ion transport%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121)%3B BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT1G63950.1)%3B Has 7083 Blast hits to 3987 proteins in 399 species: Archae - 47%3B Bacteria - 875%3B Metazoa - 1731%3B Fungi - 337%3B Plants - 1157%3B Viruses - 96%3B Other Eukaryotes - 2840 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:20736450, PMID:23368984, locus:2025421; locus_type=protein_coding
AT1G01490.2	chr1:000180401	0.0	C/180401-180852,181347-181422,182061-182066	AT1G01490.2 CDS AT1G01490 ID=AT1G01490.2; Parent=AT1G01490; Name=AT1G01490.2; Note=Heavy metal transport/detoxification superfamily protein; conf_class=2; computational_description=Heavy metal transport/detoxification superfamily protein %3B FUNCTIONS IN: metal ion binding%3B INVOLVED IN: metal ion transport%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121)%3B BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT1G63950.1)%3B Has 7083 Blast hits to 3987 proteins in 399 species: Archae - 47%3B Bacteria - 875%3B Metazoa - 1731%3B Fungi - 337%3B Plants - 1157%3B Viruses - 96%3B Other Eukaryotes - 2840 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:20736450, PMID:23368984, locus:2025421; locus_type=protein_coding
AT1G01490.3	chr1:000180401	0.0	C/180401-180835	AT1G01490.3 CDS AT1G01490 ID=AT1G01490.3; Parent=AT1G01490; Name=AT1G01490.3; Note=Heavy metal transport/detoxification superfamily protein; computational_description=Heavy metal transport/detoxification superfamily protein %3B FUNCTIONS IN: metal ion binding%3B INVOLVED IN: metal ion transport%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121)%3B BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT1G63950.1)%3B Has 7083 Blast hits to 3987 proteins in 399 species: Archae - 47%3B Bacteria - 875%3B Metazoa - 1731%3B Fungi - 337%3B Plants - 1157%3B Viruses - 96%3B Other Eukaryotes - 2840 (source: NCBI BLink).; Dbxref=PMID:20736450, PMID:23368984, locus:2025421; locus_type=protein_coding
AT1G01490.4	chr1:000180401	0.0	C/180401-180852,181347-181422,181594-181680	AT1G01490.4 CDS AT1G01490 ID=AT1G01490.4; Parent=AT1G01490; Name=AT1G01490.4; Note=Heavy metal transport/detoxification superfamily protein; computational_description=Heavy metal transport/detoxification superfamily protein %3B FUNCTIONS IN: metal ion binding%3B INVOLVED IN: metal ion transport%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121)%3B BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT1G63950.1)%3B Has 7083 Blast hits to 3987 proteins in 399 species: Archae - 47%3B Bacteria - 875%3B Metazoa - 1731%3B Fungi - 337%3B Plants - 1157%3B Viruses - 96%3B Other Eukaryotes - 2840 (source: NCBI BLink).; Dbxref=PMID:20736450, PMID:23368984, locus:2025421; locus_type=protein_coding
AT1G01500.1	chr1:000185260	0.0	W/185260-186009,186340-186573	AT1G01500.1 CDS AT1G01500 ID=AT1G01500.1; Parent=AT1G01500; Name=AT1G01500.1; Note=Erythronate-4-phosphate dehydrogenase family protein; conf_class=2; computational_description=Erythronate-4-phosphate dehydrogenase family protein%3B BEST Arabidopsis thaliana protein match is: Erythronate-4-phosphate dehydrogenase family protein (TAIR:AT1G19400.2)%3B Has 143 Blast hits to 143 proteins in 19 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 143%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:18775970, locus:2025401; locus_type=protein_coding
AT1G01510.1	chr1:000187235	0.0	W/187235-187822,188011-188176,188284-188414,188529-189320,189417-189464,189562-189675,189765-189836	AT1G01510.1 CDS AT1G01510 ID=AT1G01510.1; Parent=AT1G01510; Name=AT1G01510.1; Note=NAD(P)-binding Rossmann-fold superfamily protein; curator_summary=Encodes a homolog of human CtBP. Mutant has longer and thicker leaves than wild type. Involved in controlling polar cell expansion in the leaf width direction.; conf_class=2; symbol=AN; Alias=DOQ, DETORQUEO; full_name=ANGUSTIFOLIA; computational_description=ANGUSTIFOLIA (AN)%3B CONTAINS InterPro DOMAIN/s: D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD-binding (InterPro:IPR006140)%2C NAD(P)-binding domain (InterPro:IPR016040)%3B BEST Arabidopsis thaliana protein match is: D-isomer specific 2-hydroxyacid dehydrogenase family protein (TAIR:AT1G12550.1)%3B Has 20556 Blast hits to 20427 proteins in 2617 species: Archae - 372%3B Bacteria - 13694%3B Metazoa - 624%3B Fungi - 929%3B Plants - 529%3B Viruses - 5%3B Other Eukaryotes - 4403 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10572032, PMID:9736998, PMID:9393447, PMID:8625845, PMID:11889033, PMID:11978864, PMID:12079678, PMID:12615938, PMID:11889034, PMID:15659438, PMID:17972097, PMID:18560884, PMID:19626137, PMID:19843316, PMID:21801251, PMID:23368817, PMID:23672620, locus:2025376; locus_type=protein_coding
AT1G01520.1	chr1:000190596	0.0	W/190596-190828,190941-190998,191138-191258,191341-191475,191579-191692,191780-191889,191967-192026,192107-192139	AT1G01520.1 CDS AT1G01520 ID=AT1G01520.1; Parent=AT1G01520; Name=AT1G01520.1; Note=Homeodomain-like superfamily protein; conf_class=1; symbol=ASG4; full_name=ALTERED SEED GERMINATION 4; computational_description=Homeodomain-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C Myb-like DNA-binding domain%2C SHAQKYF class (InterPro:IPR006447)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%3B BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT4G01280.1)%3B Has 1311 Blast hits to 1300 proteins in 113 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 59%3B Fungi - 0%3B Plants - 1067%3B Viruses - 0%3B Other Eukaryotes - 185 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11118137, PMID:14576160, PMID:15086800, PMID:15713015, PMID:16463103, PMID:16845059, PMID:16829591, PMID:17316173, PMID:24377444, locus:2025411; locus_type=protein_coding
AT1G01520.2	chr1:000190596	0.0	W/190596-190828,190941-190998,191138-191258,191341-191475,191579-191692,191780-191895	AT1G01520.2 CDS AT1G01520 ID=AT1G01520.2; Parent=AT1G01520; Name=AT1G01520.2; Note=Homeodomain-like superfamily protein; symbol=ASG4; full_name=ALTERED SEED GERMINATION 4; computational_description=Homeodomain-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C Myb-like DNA-binding domain%2C SHAQKYF class (InterPro:IPR006447)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%3B BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT4G01280.1)%3B Has 1311 Blast hits to 1300 proteins in 113 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 59%3B Fungi - 0%3B Plants - 1067%3B Viruses - 0%3B Other Eukaryotes - 185 (source: NCBI BLink).; Dbxref=PMID:11118137, PMID:14576160, PMID:15086800, PMID:15713015, PMID:16463103, PMID:16845059, PMID:16829591, PMID:17316173, PMID:24377444, locus:2025411; locus_type=protein_coding
AT1G01520.3	chr1:000190596	0.0	W/190596-190828,190941-190998,191138-191258,191341-191475,191579-191692,191780-191889,191967-192059	AT1G01520.3 CDS AT1G01520 ID=AT1G01520.3; Parent=AT1G01520; Name=AT1G01520.3; Note=Homeodomain-like superfamily protein; symbol=ASG4; full_name=ALTERED SEED GERMINATION 4; computational_description=Homeodomain-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C Myb-like DNA-binding domain%2C SHAQKYF class (InterPro:IPR006447)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%3B BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT4G01280.1)%3B Has 1311 Blast hits to 1300 proteins in 113 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 59%3B Fungi - 0%3B Plants - 1067%3B Viruses - 0%3B Other Eukaryotes - 185 (source: NCBI BLink).; Dbxref=PMID:11118137, PMID:14576160, PMID:15086800, PMID:15713015, PMID:16463103, PMID:16845059, PMID:16829591, PMID:17316173, PMID:24377444, locus:2025411; locus_type=protein_coding
AT1G01520.4	chr1:000190596	0.0	W/190596-190828,190941-190998,191138-191258,191341-191475,191579-191692,191780-191895	AT1G01520.4 CDS AT1G01520 ID=AT1G01520.4; Parent=AT1G01520; Name=AT1G01520.4; Note=Homeodomain-like superfamily protein; symbol=ASG4; full_name=ALTERED SEED GERMINATION 4; computational_description=Homeodomain-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C Myb-like DNA-binding domain%2C SHAQKYF class (InterPro:IPR006447)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%3B BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT4G01280.1)%3B Has 1311 Blast hits to 1300 proteins in 113 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 59%3B Fungi - 0%3B Plants - 1067%3B Viruses - 0%3B Other Eukaryotes - 185 (source: NCBI BLink).; Dbxref=PMID:11118137, PMID:14576160, PMID:15086800, PMID:15713015, PMID:16463103, PMID:16845059, PMID:16829591, PMID:17316173, PMID:24377444, locus:2025411; locus_type=protein_coding
AT1G01520.5	chr1:000191181	0.0	W/191181-191475,191579-191692,191780-191889,191967-192026,192107-192139	AT1G01520.5 CDS AT1G01520 ID=AT1G01520.5; Parent=AT1G01520; Name=AT1G01520.5; Note=Homeodomain-like superfamily protein; symbol=ASG4; full_name=ALTERED SEED GERMINATION 4; computational_description=Homeodomain-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C Myb-like DNA-binding domain%2C SHAQKYF class (InterPro:IPR006447)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%3B BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT4G01280.1)%3B Has 1311 Blast hits to 1300 proteins in 113 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 59%3B Fungi - 0%3B Plants - 1067%3B Viruses - 0%3B Other Eukaryotes - 185 (source: NCBI BLink).; Dbxref=PMID:11118137, PMID:14576160, PMID:15086800, PMID:15713015, PMID:16463103, PMID:16845059, PMID:16829591, PMID:17316173, PMID:24377444, locus:2025411; locus_type=protein_coding
AT1G01530.1	chr1:000192640	0.0	C/192640-193071,193351-193662	AT1G01530.1 CDS AT1G01530 ID=AT1G01530.1; Parent=AT1G01530; Name=AT1G01530.1; Note=AGAMOUS-like 28; conf_class=2; symbol=AGL28; full_name=AGAMOUS-like 28; computational_description=AGAMOUS-like 28 (AGL28)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B LOCATED IN: nucleus%3B EXPRESSED IN: central cell%2C embryo%2C endosperm%3B CONTAINS InterPro DOMAIN/s: Transcription factor%2C MADS-box (InterPro:IPR002100)%3B BEST Arabidopsis thaliana protein match is: AGAMOUS-like 23 (TAIR:AT1G65360.1)%3B Has 6009 Blast hits to 6009 proteins in 738 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 628%3B Fungi - 306%3B Plants - 4996%3B Viruses - 0%3B Other Eukaryotes - 79 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:12169696, PMID:12698294, PMID:12837945, PMID:12949148, PMID:15375205, PMID:15908605, PMID:16899218, PMID:20631316, locus:2025386; locus_type=protein_coding
AT1TE00600	chr1:000193674	0.0	C/193674-194263	AT1TE00600 transposable_element AT1TE00600 ID=AT1TE00600; Name=AT1TE00600; Alias=ATREP5
AT1TE00605	chr1:000194264	0.0	C/194264-194300	AT1TE00605 transposable_element AT1TE00605 ID=AT1TE00605; Name=AT1TE00605; Alias=ATREP3
AT1TE00610	chr1:000194301	0.0	C/194301-194336	AT1TE00610 transposable_element AT1TE00610 ID=AT1TE00610; Name=AT1TE00610; Alias=ATREP4
AT1G01540.1	chr1:000195980	0.0	W/195980-196542,197115-197219,197300-197422,197501-197671,197775-197973	AT1G01540.1 CDS AT1G01540 ID=AT1G01540.1; Parent=AT1G01540; Name=AT1G01540.1; Note=Protein kinase superfamily protein; conf_class=2; computational_description=Protein kinase superfamily protein%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT4G01330.2)%3B Has 117942 Blast hits to 116606 proteins in 4399 species: Archae - 110%3B Bacteria - 14062%3B Metazoa - 43660%3B Fungi - 9737%3B Plants - 32599%3B Viruses - 442%3B Other Eukaryotes - 17332 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12368499, PMID:21477822, locus:2025396; locus_type=protein_coding
AT1G01540.2	chr1:000195980	0.0	W/195980-196542,197115-197219,197300-197422,197501-197671,197775-197904,197974-198183,198267-198383	AT1G01540.2 CDS AT1G01540 ID=AT1G01540.2; Parent=AT1G01540; Name=AT1G01540.2; Note=Protein kinase superfamily protein; conf_class=2; computational_description=Protein kinase superfamily protein%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT4G01330.2)%3B Has 117942 Blast hits to 116606 proteins in 4399 species: Archae - 110%3B Bacteria - 14062%3B Metazoa - 43660%3B Fungi - 9737%3B Plants - 32599%3B Viruses - 442%3B Other Eukaryotes - 17332 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12368499, PMID:21477822, locus:2025396; locus_type=protein_coding
AT1G01550.1	chr1:000200526	0.0	W/200526-201575	AT1G01550.1 CDS AT1G01550 ID=AT1G01550.1; Parent=AT1G01550; Name=AT1G01550.1; Note=BPS1-like protein (DUF793); curator_summary=Encodes a protein with no functionally characterized domains that to prevent the synthesis of a novel substance that moves from the root to the shoot%2C where it modifies shoot growth by interfering with auxin signaling. Synthesis and delivery of this substance requires neither phloem nor endodermis.; conf_class=2; symbol=BPS1; full_name=BYPASS 1; computational_description=BYPASS 1 (BPS1)%3B FUNCTIONS IN: molecular_function unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511)%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46080.1)%3B Has 170 Blast hits to 170 proteins in 24 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 7%3B Fungi - 0%3B Plants - 160%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:14551330, PMID:15458645, PMID:15688252, PMID:17217459, PMID:17513503, PMID:18650403, PMID:18716882, PMID:18775970, PMID:20074142, PMID:21291559, PMID:22274700, PMID:22580686, locus:2025406; locus_type=protein_coding
AT1G01550.2	chr1:000200526	0.0	W/200526-201575	AT1G01550.2 CDS AT1G01550 ID=AT1G01550.2; Parent=AT1G01550; Name=AT1G01550.2; Note=BPS1-like protein (DUF793); curator_summary=Encodes a protein with no functionally characterized domains that to prevent the synthesis of a novel substance that moves from the root to the shoot%2C where it modifies shoot growth by interfering with auxin signaling. Synthesis and delivery of this substance requires neither phloem nor endodermis.; conf_class=2; symbol=BPS1; full_name=BYPASS 1; computational_description=BYPASS 1 (BPS1)%3B FUNCTIONS IN: molecular_function unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511)%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46080.1)%3B Has 170 Blast hits to 170 proteins in 24 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 7%3B Fungi - 0%3B Plants - 160%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:14551330, PMID:15458645, PMID:15688252, PMID:17217459, PMID:17513503, PMID:18650403, PMID:18716882, PMID:18775970, PMID:20074142, PMID:21291559, PMID:22274700, PMID:22580686, locus:2025406; locus_type=protein_coding
AT1G01560.1	chr1:000202345	0.0	W/202345-202508,202782-202911,202991-203128,203267-203662	AT1G01560.1 CDS AT1G01560 ID=AT1G01560.1; Parent=AT1G01560; Name=AT1G01560.1; Note=MAP kinase 11; curator_summary=member of MAP Kinase; conf_class=2; symbol=MPK11; Alias=ATMPK11, MAP kinase 11; full_name=MAP kinase 11; computational_description=MAP kinase 11 (MPK11)%3B FUNCTIONS IN: MAP kinase activity%2C kinase activity%3B INVOLVED IN: signal transduction%2C response to abscisic acid stimulus%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase-like domain (InterPro:IPR011009)%2C MAP kinase%2C conserved site (InterPro:IPR003527)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%3B BEST Arabidopsis thaliana protein match is: MAP kinase 4 (TAIR:AT4G01370.1)%3B Has 120594 Blast hits to 119420 proteins in 4621 species: Archae - 98%3B Bacteria - 12299%3B Metazoa - 46324%3B Fungi - 12052%3B Plants - 29649%3B Viruses - 464%3B Other Eukaryotes - 19708 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11544109, PMID:12119167, PMID:15266050, PMID:15235117, PMID:15489280, PMID:16146321, PMID:16258012, PMID:16244138, PMID:16537113, PMID:17194768, PMID:17933903, PMID:18315867, PMID:18441220, PMID:18650403, PMID:18783601, PMID:21098735, PMID:22204645, PMID:22147519, PMID:22837762, PMID:22899057, PMID:23818851, PMID:24245741, PMID:24595057, locus:2025341; locus_type=protein_coding
AT1G01560.2	chr1:000202345	0.0	W/202345-202508,202782-202911,202991-203128,203267-203599,203760-203943,204029-204189	AT1G01560.2 CDS AT1G01560 ID=AT1G01560.2; Parent=AT1G01560; Name=AT1G01560.2; Note=MAP kinase 11; curator_summary=member of MAP Kinase; conf_class=2; symbol=MPK11; Alias=ATMPK11, MAP kinase 11; full_name=MAP kinase 11; computational_description=MAP kinase 11 (MPK11)%3B FUNCTIONS IN: MAP kinase activity%2C kinase activity%3B INVOLVED IN: signal transduction%2C response to abscisic acid stimulus%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase-like domain (InterPro:IPR011009)%2C MAP kinase%2C conserved site (InterPro:IPR003527)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%3B BEST Arabidopsis thaliana protein match is: MAP kinase 4 (TAIR:AT4G01370.1)%3B Has 120594 Blast hits to 119420 proteins in 4621 species: Archae - 98%3B Bacteria - 12299%3B Metazoa - 46324%3B Fungi - 12052%3B Plants - 29649%3B Viruses - 464%3B Other Eukaryotes - 19708 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11544109, PMID:12119167, PMID:15266050, PMID:15235117, PMID:15489280, PMID:16146321, PMID:16258012, PMID:16244138, PMID:16537113, PMID:17194768, PMID:17933903, PMID:18315867, PMID:18441220, PMID:18650403, PMID:18783601, PMID:21098735, PMID:22204645, PMID:22147519, PMID:22837762, PMID:22899057, PMID:23818851, PMID:24245741, PMID:24595057, locus:2025341; locus_type=protein_coding
AT1G01560.3	chr1:000202345	0.0	W/202345-202508,202782-202911,202991-203128,203267-203599,203760-204035	AT1G01560.3 CDS AT1G01560 ID=AT1G01560.3; Parent=AT1G01560; Name=AT1G01560.3; Note=MAP kinase 11; symbol=MPK11; Alias=ATMPK11, MAP kinase 11; full_name=MAP kinase 11; curator_summary=member of MAP Kinase; computational_description=MAP kinase 11 (MPK11)%3B FUNCTIONS IN: MAP kinase activity%2C kinase activity%3B INVOLVED IN: signal transduction%2C response to abscisic acid stimulus%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase-like domain (InterPro:IPR011009)%2C MAP kinase%2C conserved site (InterPro:IPR003527)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%3B BEST Arabidopsis thaliana protein match is: MAP kinase 4 (TAIR:AT4G01370.1)%3B Has 120594 Blast hits to 119420 proteins in 4621 species: Archae - 98%3B Bacteria - 12299%3B Metazoa - 46324%3B Fungi - 12052%3B Plants - 29649%3B Viruses - 464%3B Other Eukaryotes - 19708 (source: NCBI BLink).; Dbxref=PMID:11544109, PMID:12119167, PMID:15266050, PMID:15235117, PMID:15489280, PMID:16146321, PMID:16258012, PMID:16244138, PMID:16537113, PMID:17194768, PMID:17933903, PMID:18315867, PMID:18441220, PMID:18650403, PMID:18783601, PMID:21098735, PMID:22204645, PMID:22147519, PMID:22837762, PMID:22899057, PMID:23818851, PMID:24245741, PMID:24595057, locus:2025341; locus_type=protein_coding
AT1G01560.4	chr1:000202345	0.0	W/202345-202508,202782-202911,202991-203128,203267-203662	AT1G01560.4 CDS AT1G01560 ID=AT1G01560.4; Parent=AT1G01560; Name=AT1G01560.4; Note=MAP kinase 11; symbol=MPK11; Alias=ATMPK11, MAP kinase 11; full_name=MAP kinase 11; Dbxref=PMID:11544109, PMID:12119167, PMID:15266050, PMID:15235117, PMID:15489280, PMID:16146321, PMID:16258012, PMID:16244138, PMID:16537113, PMID:17194768, PMID:17933903, PMID:18315867, PMID:18441220, PMID:18650403, PMID:18783601, PMID:21098735, PMID:22204645, PMID:22147519, PMID:22837762, PMID:22899057, PMID:23818851, PMID:24245741, PMID:24595057, locus:2025341; curator_summary=member of MAP Kinase; computational_description=MAP kinase 11 (MPK11)%3B FUNCTIONS IN: MAP kinase activity%2C kinase activity%3B INVOLVED IN: signal transduction%2C response to abscisic acid stimulus%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase-like domain (InterPro:IPR011009)%2C MAP kinase%2C conserved site (InterPro:IPR003527)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%3B BEST Arabidopsis thaliana protein match is: MAP kinase 4 (TAIR:AT4G01370.1)%3B Has 120594 Blast hits to 119420 proteins in 4621 species: Archae - 98%3B Bacteria - 12299%3B Metazoa - 46324%3B Fungi - 12052%3B Plants - 29649%3B Viruses - 464%3B Other Eukaryotes - 19708 (source: NCBI BLink).; locus_type=protein_coding
AT1G01570.2	chr1:000205083	0.0	W/205083-205949,206692-207243,207325-207435	AT1G01570.2 CDS AT1G01570 ID=AT1G01570.2; Parent=AT1G01570; Name=AT1G01570.2; Note=transferring glycosyl group transferase (DUF604); computational_description=FUNCTIONS IN: transferase activity%2C transferring glycosyl groups%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 15 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF604 (InterPro:IPR006740)%3B BEST Arabidopsis thaliana protein match is: fringe-related protein (TAIR:AT4G00300.1)%3B Has 558 Blast hits to 547 proteins in 95 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 99%3B Fungi - 169%3B Plants - 281%3B Viruses - 0%3B Other Eukaryotes - 9 (source: NCBI BLink).; Dbxref=locus:2025416; locus_type=protein_coding
AT1G01570.1	chr1:000205176	0.0	W/205176-205949,206692-207243,207325-207435	AT1G01570.1 CDS AT1G01570 ID=AT1G01570.1; Parent=AT1G01570; Name=AT1G01570.1; Note=transferring glycosyl group transferase (DUF604); conf_class=4; computational_description=FUNCTIONS IN: transferase activity%2C transferring glycosyl groups%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 15 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF604 (InterPro:IPR006740)%3B BEST Arabidopsis thaliana protein match is: fringe-related protein (TAIR:AT4G00300.1)%3B Has 558 Blast hits to 547 proteins in 95 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 99%3B Fungi - 169%3B Plants - 281%3B Viruses - 0%3B Other Eukaryotes - 9 (source: NCBI BLink).; conf_rating=***; Dbxref=locus:2025416; locus_type=protein_coding
AT1TE00660	chr1:000208030	0.0	W/208030-208051	AT1TE00660 transposable_element AT1TE00660 ID=AT1TE00660; Name=AT1TE00660; Alias=ATDNA2T9C
AT1TE00665	chr1:000208052	0.0	W/208052-208550	AT1TE00665 transposable_element AT1TE00665 ID=AT1TE00665; Name=AT1TE00665; Alias=ATREP11
AT1TE00670	chr1:000208551	0.0	W/208551-209163	AT1TE00670 transposable_element AT1TE00670 ID=AT1TE00670; Name=AT1TE00670; Alias=HELITRONY1E
AT1G01580.2	chr1:000209161	0.0	W/209161-209608,209764-209866,209950-210144,210385-210619,211052-211379,211474-211717,211855-212573,212671-212810	AT1G01580.2 CDS AT1G01580 ID=AT1G01580.2; Parent=AT1G01580; Name=AT1G01580.2; Note=ferric reduction oxidase 2; symbol=FRO2; Alias=ATFRO2, FERRIC REDUCTION OXIDASE 2, FRD1, FERRIC CHELATE REDUCTASE DEFECTIVE 1; full_name=ferric reduction oxidase 2; curator_summary=Encodes the low-iron-inducible ferric chelate reductase responsible for reduction of iron at the root surface. It is likely to be the major Fe(III) chelate reductase in Arabidopsis iron metabolism. Coordinately regulated with IRT1%2C the major transporter responsible for high-affinity iron uptake from the soil%2C at both transcriptional and posttranscriptional levels. Steady state mRNA levels are regulated by several metals. Its transcription is regulated by FIT1.; computational_description=ferric reduction oxidase 2 (FRO2)%3B CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927)%2C Ferric reductase%2C NAD binding (InterPro:IPR013121)%2C FAD-binding 8 (InterPro:IPR013112)%2C Riboflavin synthase-like beta-barrel (InterPro:IPR017938)%2C Ferric reductase-like transmembrane component%2C N-terminal (InterPro:IPR013130)%3B BEST Arabidopsis thaliana protein match is: ferric reduction oxidase 1 (TAIR:AT1G01590.1)%3B Has 2711 Blast hits to 2707 proteins in 388 species: Archae - 5%3B Bacteria - 307%3B Metazoa - 560%3B Fungi - 1180%3B Plants - 483%3B Viruses - 0%3B Other Eukaryotes - 176 (source: NCBI BLink).; Dbxref=PMID:10769179, PMID:10067892, PMID:8953245, PMID:12805609, PMID:12787249, PMID:14526117, PMID:15539473, PMID:16006655, PMID:15556641, PMID:16362328, PMID:16845482, PMID:16813577, PMID:16741749, PMID:17085755, PMID:18631293, PMID:19154225, PMID:19121106, PMID:19188276, PMID:19252923, PMID:19448037, PMID:18268542, PMID:20055961, PMID:20627899, PMID:20736450, PMID:20699398, PMID:21325567, PMID:21426424, PMID:21334215, PMID:22476458, PMID:22984573, PMID:22983953, PMID:23590825, PMID:23759098, PMID:23974911, PMID:24192296, PMID:24456400, PMID:24549117, PMID:24711810, PMID:25289518, PMID:25366567, locus:2025351; locus_type=protein_coding
AT1G01580.1	chr1:000209395	0.0	W/209395-209608,209764-209866,209950-210144,210385-210619,211052-211379,211474-211717,211855-212573,212671-212810	AT1G01580.1 CDS AT1G01580 ID=AT1G01580.1; Parent=AT1G01580; Name=AT1G01580.1; Note=ferric reduction oxidase 2; curator_summary=Encodes the low-iron-inducible ferric chelate reductase responsible for reduction of iron at the root surface. It is likely to be the major Fe(III) chelate reductase in Arabidopsis iron metabolism. Coordinately regulated with IRT1%2C the major transporter responsible for high-affinity iron uptake from the soil%2C at both transcriptional and posttranscriptional levels. Steady state mRNA levels are regulated by several metals. Its transcription is regulated by FIT1.; conf_class=2; symbol=FRO2; Alias=ATFRO2, FERRIC REDUCTION OXIDASE 2, FRD1, FERRIC CHELATE REDUCTASE DEFECTIVE 1; full_name=ferric reduction oxidase 2; computational_description=ferric reduction oxidase 2 (FRO2)%3B CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927)%2C Ferric reductase%2C NAD binding (InterPro:IPR013121)%2C FAD-binding 8 (InterPro:IPR013112)%2C Riboflavin synthase-like beta-barrel (InterPro:IPR017938)%2C Ferric reductase-like transmembrane component%2C N-terminal (InterPro:IPR013130)%3B BEST Arabidopsis thaliana protein match is: ferric reduction oxidase 1 (TAIR:AT1G01590.1)%3B Has 2711 Blast hits to 2707 proteins in 388 species: Archae - 5%3B Bacteria - 307%3B Metazoa - 560%3B Fungi - 1180%3B Plants - 483%3B Viruses - 0%3B Other Eukaryotes - 176 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10769179, PMID:10067892, PMID:8953245, PMID:12805609, PMID:12787249, PMID:14526117, PMID:15539473, PMID:16006655, PMID:15556641, PMID:16362328, PMID:16845482, PMID:16813577, PMID:16741749, PMID:17085755, PMID:18631293, PMID:19154225, PMID:19121106, PMID:19188276, PMID:19252923, PMID:19448037, PMID:18268542, PMID:20055961, PMID:20627899, PMID:20736450, PMID:20699398, PMID:21325567, PMID:21426424, PMID:21334215, PMID:22476458, PMID:22984573, PMID:22983953, PMID:23590825, PMID:23759098, PMID:23974911, PMID:24192296, PMID:24456400, PMID:24549117, PMID:24711810, PMID:25289518, PMID:25366567, locus:2025351; locus_type=protein_coding
AT1TE00680	chr1:000213762	0.0	W/213762-214159	AT1TE00680 transposable_element AT1TE00680 ID=AT1TE00680; Name=AT1TE00680; Alias=ATDNA2T9C
AT1G01590.1	chr1:000214229	0.0	W/214229-214406,214480-214582,214697-214897,215317-215554,215633-215960,216044-216293,216414-217090,217165-217304	AT1G01590.1 CDS AT1G01590 ID=AT1G01590.1; Parent=AT1G01590; Name=AT1G01590.1; Note=ferric reduction oxidase 1; curator_summary=Encodes a ferric-chelate reductase that is expressed at extremely low levels in Fe deficiency-induced seedlings.; conf_class=6; symbol=FRO1; Alias=ATFRO1, FERRIC REDUCTION OXIDASE 1; full_name=ferric reduction oxidase 1; computational_description=ferric reduction oxidase 1 (FRO1)%3B FUNCTIONS IN: ferric-chelate reductase activity%3B INVOLVED IN: oxidation reduction%3B LOCATED IN: integral to membrane%2C membrane%3B CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927)%2C Ferric reductase%2C NAD binding (InterPro:IPR013121)%2C FAD-binding 8 (InterPro:IPR013112)%2C Riboflavin synthase-like beta-barrel (InterPro:IPR017938)%2C Ferric reductase-like transmembrane component%2C N-terminal (InterPro:IPR013130)%3B BEST Arabidopsis thaliana protein match is: ferric reduction oxidase 3 (TAIR:AT1G23020.2)%3B Has 2645 Blast hits to 2634 proteins in 373 species: Archae - 2%3B Bacteria - 275%3B Metazoa - 567%3B Fungi - 1143%3B Plants - 485%3B Viruses - 0%3B Other Eukaryotes - 173 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:10067892, PMID:15531708, PMID:16006655, PMID:16362328, PMID:16998091, PMID:17085755, PMID:18631293, PMID:20736450, locus:2025366; locus_type=protein_coding
AT1G01600.1	chr1:000219200	0.0	W/219200-219621,219752-220994	AT1G01600.1 CDS AT1G01600 ID=AT1G01600.1; Parent=AT1G01600; Name=AT1G01600.1; Note=cytochrome P450%2C family 86%2C subfamily A%2C polypeptide 4; curator_summary=Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed significantly at highest level in mature stems and flowers.; conf_class=2; symbol=CYP86A4; full_name=cytochrome P450%2C family 86%2C subfamily A%2C polypeptide 4; computational_description=cytochrome P450%2C family 86%2C subfamily A%2C polypeptide 4 (CYP86A4)%3B CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128)%2C Cytochrome P450%2C conserved site (InterPro:IPR017972)%2C Cytochrome P450%2C E-class%2C group I (InterPro:IPR002401)%3B BEST Arabidopsis thaliana protein match is: cytochrome P450%2C family 86%2C subfamily A%2C polypeptide 2 (TAIR:AT4G00360.1)%3B Has 27858 Blast hits to 27767 proteins in 1485 species: Archae - 44%3B Bacteria - 2493%3B Metazoa - 10417%3B Fungi - 6140%3B Plants - 7807%3B Viruses - 3%3B Other Eukaryotes - 954 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15709153, PMID:16299169, PMID:17449808, PMID:17427946, PMID:18805951, PMID:19959665, PMID:21637781, PMID:23505340, locus:2025371; locus_type=protein_coding
AT1G01610.1	chr1:000221950	0.0	C/221950-222359,222622-223096,223551-223866,223945-224255	AT1G01610.1 CDS AT1G01610 ID=AT1G01610.1; Parent=AT1G01610; Name=AT1G01610.1; Note=glycerol-3-phosphate acyltransferase 4; curator_summary=bifunctional sn-glycerol-3-phosphate 2-O-acyltransferase/phosphatase. Involved in cutin assembly and is functionally redundant with GPAT8.; conf_class=2; symbol=GPAT4; Alias=ATGPAT4, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 4; full_name=GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 4; computational_description=glycerol-3-phosphate acyltransferase 4 (GPAT4)%3B FUNCTIONS IN: 1-acylglycerol-3-phosphate O-acyltransferase activity%2C acyltransferase activity%3B INVOLVED IN: metabolic process%2C cutin biosynthetic process%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123)%3B BEST Arabidopsis thaliana protein match is: glycerol-3-phosphate acyltransferase 8 (TAIR:AT4G00400.1)%3B Has 410 Blast hits to 396 proteins in 34 species: Archae - 0%3B Bacteria - 20%3B Metazoa - 10%3B Fungi - 0%3B Plants - 373%3B Viruses - 0%3B Other Eukaryotes - 7 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12897259, PMID:12969431, PMID:15295017, PMID:15531708, PMID:16258012, PMID:16299169, PMID:17259262, PMID:17449808, PMID:17991776, PMID:18326828, PMID:20551224, PMID:20736450, PMID:21173024, PMID:22864585, PMID:23505340, locus:2025381; locus_type=protein_coding
AT1G01620.1	chr1:000225986	0.0	C/225986-226081,226171-226311,226396-226691,226849-227176	AT1G01620.1 CDS AT1G01620 ID=AT1G01620.1; Parent=AT1G01620; Name=AT1G01620.1; Note=plasma membrane intrinsic protein 1C; curator_summary=a member of the plasma membrane intrinsic protein subfamily PIP1. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed ubiquitously and protein level decreases slightly during leaf development.; conf_class=2; symbol=PIP1C; Alias=PIP1%3B3, PLASMA MEMBRANE INTRINSIC PROTEIN 1%3B3, TMP-B; full_name=plasma membrane intrinsic protein 1C; computational_description=plasma membrane intrinsic protein 1C (PIP1C)%3B FUNCTIONS IN: water channel activity%3B INVOLVED IN: response to water deprivation%2C response to salt stress%2C transport%2C water transport%3B LOCATED IN: plasma membrane%2C chloroplast%2C membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Major intrinsic protein%2C conserved site (InterPro:IPR022357)%2C Aquaporin (InterPro:IPR012269)%2C Major intrinsic protein (InterPro:IPR000425)%3B BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 1%3B4 (TAIR:AT4G00430.1)%3B Has 10781 Blast hits to 10762 proteins in 2222 species: Archae - 88%3B Bacteria - 5165%3B Metazoa - 1470%3B Fungi - 448%3B Plants - 2514%3B Viruses - 2%3B Other Eukaryotes - 1094 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10938796, PMID:10759498, PMID:10417707, PMID:9276952, PMID:7920711, PMID:8108519, PMID:11500536, PMID:16183846, PMID:16235111, PMID:18650403, PMID:18702670, PMID:20736450, locus:2025391; locus_type=protein_coding
AT1G01620.2	chr1:000225986	0.0	C/225986-226081,226171-226311,226396-226691,226849-226960	AT1G01620.2 CDS AT1G01620 ID=AT1G01620.2; Parent=AT1G01620; Name=AT1G01620.2; Note=plasma membrane intrinsic protein 1C; curator_summary=a member of the plasma membrane intrinsic protein subfamily PIP1. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed ubiquitously and protein level decreases slightly during leaf development.; conf_class=3; symbol=PIP1C; Alias=PIP1%3B3, PLASMA MEMBRANE INTRINSIC PROTEIN 1%3B3, TMP-B; full_name=plasma membrane intrinsic protein 1C; computational_description=plasma membrane intrinsic protein 1C (PIP1C)%3B FUNCTIONS IN: water channel activity%3B INVOLVED IN: response to water deprivation%2C response to salt stress%2C transport%2C water transport%3B LOCATED IN: plasma membrane%2C chloroplast%2C membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Major intrinsic protein%2C conserved site (InterPro:IPR022357)%2C Aquaporin (InterPro:IPR012269)%2C Major intrinsic protein (InterPro:IPR000425)%3B BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 1%3B4 (TAIR:AT4G00430.1)%3B Has 10781 Blast hits to 10762 proteins in 2222 species: Archae - 88%3B Bacteria - 5165%3B Metazoa - 1470%3B Fungi - 448%3B Plants - 2514%3B Viruses - 2%3B Other Eukaryotes - 1094 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10938796, PMID:10759498, PMID:10417707, PMID:9276952, PMID:7920711, PMID:8108519, PMID:11500536, PMID:16183846, PMID:16235111, PMID:18650403, PMID:18702670, PMID:20736450, locus:2025391; locus_type=protein_coding
AT1G01630.1	chr1:000229206	0.0	W/229206-229343,229429-229724,229829-229934,230349-230459,230559-230675	AT1G01630.1 CDS AT1G01630 ID=AT1G01630.1; Parent=AT1G01630; Name=AT1G01630.1; Note=Sec14p-like phosphatidylinositol transfer family protein; conf_class=2; computational_description=Sec14p-like phosphatidylinositol transfer family protein%3B CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function%2C C-terminal (InterPro:IPR001251)%2C Cellular retinaldehyde-binding/triple function%2C N-terminal (InterPro:IPR008273)%2C Phosphatidylinositol transfer protein-like%2C N-terminal (InterPro:IPR011074)%3B BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT1G14820.3)%3B Has 3015 Blast hits to 3010 proteins in 234 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1124%3B Fungi - 666%3B Plants - 866%3B Viruses - 0%3B Other Eukaryotes - 359 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14682612, PMID:15728190, locus:2198135; locus_type=protein_coding
AT1G01640.1	chr1:000231164	0.0	C/231164-231655,231784-231915	AT1G01640.1 CDS AT1G01640 ID=AT1G01640.1; Parent=AT1G01640; Name=AT1G01640.1; Note=BTB/POZ domain-containing protein; curator_summary=Putative role in flower development. Comparison of SALK_011721C to Columbia wild type resulted in a trend toward earlier flowering in the mutant (P%3D0.1) (Stapleton and Woodruff 2009%2C personal communication).; conf_class=3; computational_description=BTB/POZ domain-containing protein%3B CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069)%2C BTB/POZ fold (InterPro:IPR011333)%2C Kelch related (InterPro:IPR013089)%2C BTB/POZ-like (InterPro:IPR000210)%3B BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT3G56230.1)%3B Has 4339 Blast hits to 4265 proteins in 145 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 3351%3B Fungi - 8%3B Plants - 720%3B Viruses - 35%3B Other Eukaryotes - 225 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15659098, PMID:15772280, PMID:15749712, locus:2198140; locus_type=protein_coding
AT1G01640.2	chr1:000231164	0.0	C/231164-231655,231784-231852	AT1G01640.2 CDS AT1G01640 ID=AT1G01640.2; Parent=AT1G01640; Name=AT1G01640.2; Note=BTB/POZ domain-containing protein; curator_summary=Putative role in flower development. Comparison of SALK_011721C to Columbia wild type resulted in a trend toward earlier flowering in the mutant (P%3D0.1) (Stapleton and Woodruff 2009%2C personal communication).; conf_class=2; computational_description=BTB/POZ domain-containing protein%3B CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069)%2C BTB/POZ fold (InterPro:IPR011333)%2C Kelch related (InterPro:IPR013089)%2C BTB/POZ-like (InterPro:IPR000210)%3B BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT3G56230.1)%3B Has 4339 Blast hits to 4265 proteins in 145 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 3351%3B Fungi - 8%3B Plants - 720%3B Viruses - 35%3B Other Eukaryotes - 225 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15659098, PMID:15772280, PMID:15749712, locus:2198140; locus_type=protein_coding
AT1G01650.1	chr1:000233188	0.0	C/233188-233297,233387-233470,233548-233618,234250-234392,234529-234621,234935-234988,235198-235360,235718-235752,235845-236027,236145-236296,236429-236548,236673-236784,236865-237023,237504-237647	AT1G01650.1 CDS AT1G01650 ID=AT1G01650.1; Parent=AT1G01650; Name=AT1G01650.1; Note=SIGNAL PEPTIDE PEPTIDASE-LIKE 4; conf_class=2; symbol=SPPL4; Alias=ATSPPL4, ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4; full_name=SIGNAL PEPTIDE PEPTIDASE-LIKE 4; computational_description=SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (SPPL4)%3B FUNCTIONS IN: peptidase activity%2C aspartic-type endopeptidase activity%3B INVOLVED IN: proteolysis%3B LOCATED IN: endomembrane system%2C integral to membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137)%2C Peptidase A22%2C presenilin signal peptide (InterPro:IPR006639)%2C Peptidase A22B%2C signal peptide peptidase (InterPro:IPR007369)%3B BEST Arabidopsis thaliana protein match is: SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (TAIR:AT1G63690.1)%3B Has 1466 Blast hits to 1433 proteins in 284 species: Archae - 0%3B Bacteria - 176%3B Metazoa - 611%3B Fungi - 153%3B Plants - 303%3B Viruses - 0%3B Other Eukaryotes - 223 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18067581, PMID:18775970, locus:2198155; locus_type=protein_coding
AT1G01650.2	chr1:000233188	0.0	C/233188-233297,233387-233470,233548-233618,234250-234392,234529-234621,234935-234988,235198-235360,235718-235752,235845-236027,236145-236296,236429-236537	AT1G01650.2 CDS AT1G01650 ID=AT1G01650.2; Parent=AT1G01650; Name=AT1G01650.2; Note=SIGNAL PEPTIDE PEPTIDASE-LIKE 4; conf_class=2; symbol=SPPL4; Alias=ATSPPL4, ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4; full_name=SIGNAL PEPTIDE PEPTIDASE-LIKE 4; computational_description=SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (SPPL4)%3B FUNCTIONS IN: peptidase activity%2C aspartic-type endopeptidase activity%3B INVOLVED IN: proteolysis%3B LOCATED IN: endomembrane system%2C integral to membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137)%2C Peptidase A22%2C presenilin signal peptide (InterPro:IPR006639)%2C Peptidase A22B%2C signal peptide peptidase (InterPro:IPR007369)%3B BEST Arabidopsis thaliana protein match is: SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (TAIR:AT1G63690.1)%3B Has 1466 Blast hits to 1433 proteins in 284 species: Archae - 0%3B Bacteria - 176%3B Metazoa - 611%3B Fungi - 153%3B Plants - 303%3B Viruses - 0%3B Other Eukaryotes - 223 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18067581, PMID:18775970, locus:2198155; locus_type=protein_coding
AT1G01650.3	chr1:000233188	0.0	C/233188-233297,233387-233470,233548-233618,234250-234392,234529-234621,234935-234988,235198-235360,235718-235752,235845-236027,236145-236296,236429-236537	AT1G01650.3 CDS AT1G01650 ID=AT1G01650.3; Parent=AT1G01650; Name=AT1G01650.3; Note=SIGNAL PEPTIDE PEPTIDASE-LIKE 4; symbol=SPPL4; Alias=ATSPPL4, ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4; full_name=SIGNAL PEPTIDE PEPTIDASE-LIKE 4; Dbxref=PMID:18067581, PMID:18775970, locus:2198155; computational_description=SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (SPPL4)%3B FUNCTIONS IN: peptidase activity%2C aspartic-type endopeptidase activity%3B INVOLVED IN: proteolysis%3B LOCATED IN: endomembrane system%2C integral to membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137)%2C Peptidase A22%2C presenilin signal peptide (InterPro:IPR006639)%2C Peptidase A22B%2C signal peptide peptidase (InterPro:IPR007369)%3B BEST Arabidopsis thaliana protein match is: SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (TAIR:AT1G63690.1)%3B Has 1466 Blast hits to 1433 proteins in 284 species: Archae - 0%3B Bacteria - 176%3B Metazoa - 611%3B Fungi - 153%3B Plants - 303%3B Viruses - 0%3B Other Eukaryotes - 223 (source: NCBI BLink).; locus_type=protein_coding
AT1G01650.4	chr1:000233188	0.0	C/233188-233297,233387-233470,233548-233618,234250-234392,234529-234621,234935-234988,235198-235360,235718-235752,235845-236027,236145-236296,236429-236537	AT1G01650.4 CDS AT1G01650 ID=AT1G01650.4; Parent=AT1G01650; Name=AT1G01650.4; Note=SIGNAL PEPTIDE PEPTIDASE-LIKE 4; symbol=SPPL4; Alias=ATSPPL4, ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4; full_name=SIGNAL PEPTIDE PEPTIDASE-LIKE 4; Dbxref=PMID:18067581, PMID:18775970, locus:2198155; computational_description=SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (SPPL4)%3B FUNCTIONS IN: peptidase activity%2C aspartic-type endopeptidase activity%3B INVOLVED IN: proteolysis%3B LOCATED IN: endomembrane system%2C integral to membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137)%2C Peptidase A22%2C presenilin signal peptide (InterPro:IPR006639)%2C Peptidase A22B%2C signal peptide peptidase (InterPro:IPR007369)%3B BEST Arabidopsis thaliana protein match is: SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (TAIR:AT1G63690.1)%3B Has 1466 Blast hits to 1433 proteins in 284 species: Archae - 0%3B Bacteria - 176%3B Metazoa - 611%3B Fungi - 153%3B Plants - 303%3B Viruses - 0%3B Other Eukaryotes - 223 (source: NCBI BLink).; locus_type=protein_coding
AT1G04027.1	chr1:000234006	0.0	C/234006-234159	AT1G04027.1 miRNA_primary_transcript AT1G04027 ID=AT1G04027.1; Parent=AT1G04027; Alias=MI0010632; Name=ath-MIR2112; symbol=ath-MIR2112; Note=microRNA ath-MIR2112 precursor; locus_type=mirna
ath-miR2112-3p	chr1:000234017	0.0	C/234017-234037	ath-miR2112-3p miRNA ath-miR2112-3p ID=ath-miR2112-3p; Alias=MIMAT0011155; Name=ath-miR2112-3p; Derives_from=AT1G04027.1; Note=microRNA ath-miR2112-3p; computational_description=mature miRNA accession:MIMAT0011155
ath-miR2112-5p	chr1:000234126	0.0	C/234126-234146	ath-miR2112-5p miRNA ath-miR2112-5p ID=ath-miR2112-5p; Alias=MIMAT0011154; Name=ath-miR2112-5p; Derives_from=AT1G04027.1; Note=microRNA ath-miR2112-5p; computational_description=mature miRNA accession:MIMAT0011154
AT1G01660.1	chr1:000240057	0.0	C/240057-240242,240352-240672,240744-240884,240960-241226,241306-241443,241539-241719,241805-241909,241983-242113,242214-242290,242449-242608	AT1G01660.1 CDS AT1G01660 ID=AT1G01660.1; Parent=AT1G01660; Name=AT1G01660.1; Note=RING/U-box superfamily protein; conf_class=6; computational_description=RING/U-box superfamily protein%3B FUNCTIONS IN: ubiquitin-protein ligase activity%3B INVOLVED IN: protein ubiquitination%3B LOCATED IN: ubiquitin ligase complex%3B CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613)%3B BEST Arabidopsis thaliana protein match is: U-box domain-containing protein kinase family protein (TAIR:AT2G45910.1)%3B Has 73160 Blast hits to 42540 proteins in 2253 species: Archae - 866%3B Bacteria - 9091%3B Metazoa - 34168%3B Fungi - 4977%3B Plants - 4797%3B Viruses - 224%3B Other Eukaryotes - 19037 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:20736450, PMID:21284606, locus:2198165; locus_type=protein_coding
AT1G01660.2	chr1:000240057	0.0	C/240057-240242,240352-240672,240744-240892,240965-241226,241306-241443,241539-241719,241805-241909,241983-242113,242214-242290,242449-242608	AT1G01660.2 CDS AT1G01660 ID=AT1G01660.2; Parent=AT1G01660; Name=AT1G01660.2; Note=RING/U-box superfamily protein; computational_description=RING/U-box superfamily protein%3B FUNCTIONS IN: ubiquitin-protein ligase activity%3B INVOLVED IN: protein ubiquitination%3B LOCATED IN: ubiquitin ligase complex%3B CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613)%3B BEST Arabidopsis thaliana protein match is: U-box domain-containing protein kinase family protein (TAIR:AT2G45910.1)%3B Has 73160 Blast hits to 42540 proteins in 2253 species: Archae - 866%3B Bacteria - 9091%3B Metazoa - 34168%3B Fungi - 4977%3B Plants - 4797%3B Viruses - 224%3B Other Eukaryotes - 19037 (source: NCBI BLink).; Dbxref=PMID:20736450, PMID:21284606, locus:2198165; locus_type=protein_coding
AT1G01670.1	chr1:000242943	0.0	C/242943-243128,243336-243746,244035-244182,244257-244361,244505-244635,244770-244873,245151-245163	AT1G01670.1 CDS AT1G01670 ID=AT1G01670.1; Parent=AT1G01670; Name=AT1G01670.1; Note=RING/U-box superfamily protein; conf_class=2; computational_description=RING/U-box superfamily protein%3B FUNCTIONS IN: ubiquitin-protein ligase activity%3B INVOLVED IN: protein ubiquitination%3B LOCATED IN: ubiquitin ligase complex%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G61390.2)%3B Has 3857 Blast hits to 3144 proteins in 246 species: Archae - 4%3B Bacteria - 101%3B Metazoa - 863%3B Fungi - 177%3B Plants - 1725%3B Viruses - 10%3B Other Eukaryotes - 977 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17521414, PMID:20736450, locus:2198180; locus_type=protein_coding
AT1G01670.2	chr1:000242943	0.0	C/242943-243128,243336-243746,244035-244182,244257-244361,244505-244635,244770-244873,245151-245163	AT1G01670.2 CDS AT1G01670 ID=AT1G01670.2; Parent=AT1G01670; Name=AT1G01670.2; Note=RING/U-box superfamily protein; Dbxref=PMID:17521414, PMID:20736450, locus:2198180; computational_description=RING/U-box superfamily protein%3B FUNCTIONS IN: ubiquitin-protein ligase activity%3B INVOLVED IN: protein ubiquitination%3B LOCATED IN: ubiquitin ligase complex%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G61390.2)%3B Has 3857 Blast hits to 3144 proteins in 246 species: Archae - 4%3B Bacteria - 101%3B Metazoa - 863%3B Fungi - 177%3B Plants - 1725%3B Viruses - 10%3B Other Eukaryotes - 977 (source: NCBI BLink).; locus_type=protein_coding
AT1G01670.3	chr1:000242943	0.0	C/242943-243128,243336-243746,244035-244182,244257-244357	AT1G01670.3 CDS AT1G01670 ID=AT1G01670.3; Parent=AT1G01670; Name=AT1G01670.3; Note=RING/U-box superfamily protein; computational_description=RING/U-box superfamily protein%3B FUNCTIONS IN: ubiquitin-protein ligase activity%3B INVOLVED IN: protein ubiquitination%3B LOCATED IN: ubiquitin ligase complex%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G61390.2)%3B Has 3857 Blast hits to 3144 proteins in 246 species: Archae - 4%3B Bacteria - 101%3B Metazoa - 863%3B Fungi - 177%3B Plants - 1725%3B Viruses - 10%3B Other Eukaryotes - 977 (source: NCBI BLink).; Dbxref=PMID:17521414, PMID:20736450, locus:2198180; locus_type=protein_coding
AT1G01680.1	chr1:000246411	0.0	C/246411-246608,246731-246853,246949-247078,247167-247268,247362-247492,247577-247680,248191-248329	AT1G01680.1 CDS AT1G01680 ID=AT1G01680.1; Parent=AT1G01680; Name=AT1G01680.1; Note=plant U-box 54; conf_class=3; symbol=PUB54; Alias=ATPUB54, PLANT U-BOX 54; full_name=plant U-box 54; computational_description=plant U-box 54 (PUB54)%3B FUNCTIONS IN: ubiquitin-protein ligase activity%3B INVOLVED IN: response to stress%2C protein ubiquitination%3B LOCATED IN: ubiquitin ligase complex%3B CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016)%2C U box domain (InterPro:IPR003613)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G01660.1)%3B Has 2251 Blast hits to 2122 proteins in 140 species: Archae - 0%3B Bacteria - 22%3B Metazoa - 203%3B Fungi - 25%3B Plants - 1809%3B Viruses - 3%3B Other Eukaryotes - 189 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14966217, PMID:18393940, PMID:20736450, locus:2198190; locus_type=protein_coding
AT1G01690.1	chr1:000249242	0.0	W/249242-249306,249540-249693,249774-249930,250014-250151,250536-250588,250669-250863,251004-251066,251143-251184,251260-251316,251399-251440,251539-251594,251680-251827,251922-252006,252121-252221	AT1G01690.1 CDS AT1G01690 ID=AT1G01690.1; Parent=AT1G01690; Name=AT1G01690.1; Note=putative recombination initiation defects 3; curator_summary=Encodes a novel plant-specific protein that is involved in meiotic double strand break formation.; conf_class=2; symbol=PRD3; Alias=ATPRD3, ARABIDOPSIS THALIANA PUTATIVE RECOMBINATION INITIATION DEFECTS 3; full_name=putative recombination initiation defects 3; computational_description=putative recombination initiation defects 3 (PRD3)%3B Has 279 Blast hits to 273 proteins in 87 species: Archae - 2%3B Bacteria - 106%3B Metazoa - 105%3B Fungi - 5%3B Plants - 32%3B Viruses - 0%3B Other Eukaryotes - 29 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:19763177, locus:2198200; locus_type=protein_coding
AT1G01690.2	chr1:000249242	0.0	W/249242-249306,249543-249693,249774-249930,250014-250151,250536-250588,250669-250863,251004-251066,251143-251184,251260-251316,251399-251440,251539-251594,251680-251827,251922-252006,252121-252221	AT1G01690.2 CDS AT1G01690 ID=AT1G01690.2; Parent=AT1G01690; Name=AT1G01690.2; Note=putative recombination initiation defects 3; symbol=PRD3; Alias=ATPRD3, ARABIDOPSIS THALIANA PUTATIVE RECOMBINATION INITIATION DEFECTS 3; full_name=putative recombination initiation defects 3; curator_summary=Encodes a novel plant-specific protein that is involved in meiotic double strand break formation.; computational_description=putative recombination initiation defects 3 (PRD3)%3B Has 279 Blast hits to 273 proteins in 87 species: Archae - 2%3B Bacteria - 106%3B Metazoa - 105%3B Fungi - 5%3B Plants - 32%3B Viruses - 0%3B Other Eukaryotes - 29 (source: NCBI BLink).; Dbxref=PMID:14576160, PMID:19763177, locus:2198200; locus_type=protein_coding
AT1G01690.3	chr1:000249242	0.0	W/249242-249306,249540-249693,249774-249930,250017-250151,250536-250588,250669-250863,251004-251066,251143-251184,251260-251316,251399-251440,251539-251594,251680-251827,251922-252006,252121-252221	AT1G01690.3 CDS AT1G01690 ID=AT1G01690.3; Parent=AT1G01690; Name=AT1G01690.3; Note=putative recombination initiation defects 3; symbol=PRD3; Alias=ATPRD3, ARABIDOPSIS THALIANA PUTATIVE RECOMBINATION INITIATION DEFECTS 3; full_name=putative recombination initiation defects 3; curator_summary=Encodes a novel plant-specific protein that is involved in meiotic double strand break formation.; computational_description=putative recombination initiation defects 3 (PRD3)%3B Has 279 Blast hits to 273 proteins in 87 species: Archae - 2%3B Bacteria - 106%3B Metazoa - 105%3B Fungi - 5%3B Plants - 32%3B Viruses - 0%3B Other Eukaryotes - 29 (source: NCBI BLink).; Dbxref=PMID:14576160, PMID:19763177, locus:2198200; locus_type=protein_coding
AT1G01695.1	chr1:000252947	0.0	W/252947-253457,253531-253679,253775-253874,253954-254495	AT1G01695.1 CDS AT1G01695 ID=AT1G01695.1; Parent=AT1G01695; Name=AT1G01695.1; Note=Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein; conf_class=8; symbol=TRM33; full_name=TON1 Recruiting Motif 33; computational_description=Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3741) (TAIR:AT4G00440.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=*; Dbxref=PMID:22286137, locus:4515102489; locus_type=protein_coding
AT1G08775.1	chr1:000254830	0.0	W/254830-257582	AT1G08775.1 transcript_region AT1G08775 ID=AT1G08775.1; Parent=AT1G08775; computational_description=novel transcribed region; Name=AT1G08775.1; locus_type=novel_transcribed_region
AT1G04033.1	chr1:000255022	0.0	W/255022-255384	AT1G04033.1 lnc_RNA AT1G04033 ID=AT1G04033.1; Parent=AT1G04033; Name=AT1G04033.1; locus_type=long_noncoding_rna
AT1G08775.2	chr1:000255228	0.0	W/255228-257356	AT1G08775.2 transcript_region AT1G08775 ID=AT1G08775.2; Parent=AT1G08775; computational_description=novel transcribed region; Name=AT1G08775.2; locus_type=novel_transcribed_region
AT1TE00820	chr1:000255712	0.0	C/255712-256074	AT1TE00820 transposable_element AT1TE00820 ID=AT1TE00820; Name=AT1TE00820; Alias=HELITRONY3
AT1TE00825	chr1:000256075	0.0	C/256075-256920	AT1TE00825 transposable_element AT1TE00825 ID=AT1TE00825; Name=AT1TE00825; Alias=ATHPOGON3
AT1TE00830	chr1:000256921	0.0	W/256921-256967	AT1TE00830 transposable_element AT1TE00830 ID=AT1TE00830; Name=AT1TE00830; Alias=BRODYAGA2
AT1TE00835	chr1:000257687	0.0	W/257687-257709	AT1TE00835 transposable_element AT1TE00835 ID=AT1TE00835; Name=AT1TE00835; Alias=AT9NMU1
AT1TE00840	chr1:000257710	0.0	C/257710-258629	AT1TE00840 transposable_element AT1TE00840 ID=AT1TE00840; Name=AT1TE00840; Alias=AT9NMU1
AT1TE00845	chr1:000258630	0.0	C/258630-258712	AT1TE00845 transposable_element AT1TE00845 ID=AT1TE00845; Name=AT1TE00845; Alias=AT9NMU1
AT1G04037.1	chr1:000258717	0.0	C/258717-258963	AT1G04037.1 lnc_RNA AT1G04037 ID=AT1G04037.1; Parent=AT1G04037; Name=AT1G04037.1; locus_type=long_noncoding_rna
AT1G01700.1	chr1:000259495	0.0	C/259495-259614,259690-260034,260118-260417,260508-260582,260670-260824,260921-261037,261129-261474	AT1G01700.1 CDS AT1G01700 ID=AT1G01700.1; Parent=AT1G01700; Name=AT1G01700.1; Note=RHO guanyl-nucleotide exchange factor 2; curator_summary=Encodes a member of KPP-like gene family%2C homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family%2C containing the novel PRONE domain (plant-specific Rop nucleotide exchanger)%2C which is exclusively active towards members of the Rop subfamily.; conf_class=3; symbol=ROPGEF2; Alias=ATROPGEF2; full_name=ROP (rho of plants) guanine nucleotide exchange factor 2; computational_description=RHO guanyl-nucleotide exchange factor 2 (ROPGEF2)%3B CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger%2C PRONE (InterPro:IPR005512)%3B BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 3 (TAIR:AT4G00460.2)%3B Has 308 Blast hits to 304 proteins in 16 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 308%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15860008, PMID:15980860, PMID:20736450, PMID:22500990, locus:2198220; locus_type=protein_coding
AT1G01700.4	chr1:000259495	0.0	C/259495-259614,259690-260034,260118-260582,260670-260824,260921-261037,261129-261474	AT1G01700.4 CDS AT1G01700 ID=AT1G01700.4; Parent=AT1G01700; Name=AT1G01700.4; Note=RHO guanyl-nucleotide exchange factor 2; symbol=ROPGEF2; Alias=ATROPGEF2; full_name=ROP (rho of plants) guanine nucleotide exchange factor 2; curator_summary=Encodes a member of KPP-like gene family%2C homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family%2C containing the novel PRONE domain (plant-specific Rop nucleotide exchanger)%2C which is exclusively active towards members of the Rop subfamily.; computational_description=RHO guanyl-nucleotide exchange factor 2 (ROPGEF2)%3B CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger%2C PRONE (InterPro:IPR005512)%3B BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 3 (TAIR:AT4G00460.2)%3B Has 308 Blast hits to 304 proteins in 16 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 308%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=PMID:15860008, PMID:15980860, PMID:20736450, PMID:22500990, locus:2198220; locus_type=protein_coding
AT1G01700.3	chr1:000259663	0.0	C/259663-260034,260118-260417,260508-260603,260670-260824,260921-261037,261129-261474	AT1G01700.3 CDS AT1G01700 ID=AT1G01700.3; Parent=AT1G01700; Name=AT1G01700.3; Note=RHO guanyl-nucleotide exchange factor 2; symbol=ROPGEF2; Alias=ATROPGEF2; full_name=ROP (rho of plants) guanine nucleotide exchange factor 2; curator_summary=Encodes a member of KPP-like gene family%2C homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family%2C containing the novel PRONE domain (plant-specific Rop nucleotide exchanger)%2C which is exclusively active towards members of the Rop subfamily.; computational_description=RHO guanyl-nucleotide exchange factor 2 (ROPGEF2)%3B CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger%2C PRONE (InterPro:IPR005512)%3B BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 3 (TAIR:AT4G00460.2)%3B Has 308 Blast hits to 304 proteins in 16 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 308%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=PMID:15860008, PMID:15980860, PMID:20736450, PMID:22500990, locus:2198220; locus_type=protein_coding
AT1G01700.2	chr1:000259992	0.0	C/259992-260417,260508-260582,260670-260824,260921-261037,261129-261474	AT1G01700.2 CDS AT1G01700 ID=AT1G01700.2; Parent=AT1G01700; Name=AT1G01700.2; Note=RHO guanyl-nucleotide exchange factor 2; symbol=ROPGEF2; Alias=ATROPGEF2; full_name=ROP (rho of plants) guanine nucleotide exchange factor 2; curator_summary=Encodes a member of KPP-like gene family%2C homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family%2C containing the novel PRONE domain (plant-specific Rop nucleotide exchanger)%2C which is exclusively active towards members of the Rop subfamily.; computational_description=RHO guanyl-nucleotide exchange factor 2 (ROPGEF2)%3B CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger%2C PRONE (InterPro:IPR005512)%3B BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 3 (TAIR:AT4G00460.2)%3B Has 308 Blast hits to 304 proteins in 16 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 308%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=PMID:15860008, PMID:15980860, PMID:20736450, PMID:22500990, locus:2198220; locus_type=protein_coding
AT1G01700.5	chr1:000259992	0.0	C/259992-260417,260508-260582,260670-260824,260921-261037,261129-261474	AT1G01700.5 CDS AT1G01700 ID=AT1G01700.5; Parent=AT1G01700; Name=AT1G01700.5; Note=RHO guanyl-nucleotide exchange factor 2; symbol=ROPGEF2; Alias=ATROPGEF2; full_name=ROP (rho of plants) guanine nucleotide exchange factor 2; curator_summary=Encodes a member of KPP-like gene family%2C homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family%2C containing the novel PRONE domain (plant-specific Rop nucleotide exchanger)%2C which is exclusively active towards members of the Rop subfamily.; computational_description=RHO guanyl-nucleotide exchange factor 2 (ROPGEF2)%3B CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger%2C PRONE (InterPro:IPR005512)%3B BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 3 (TAIR:AT4G00460.2)%3B Has 308 Blast hits to 304 proteins in 16 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 308%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=PMID:15860008, PMID:15980860, PMID:20736450, PMID:22500990, locus:2198220; locus_type=protein_coding
AT1G01710.1	chr1:000262950	0.0	W/262950-262965,263047-263139,263232-263299,263369-263444,263526-263572,263645-263770,263857-263934,264073-264160,264280-264392,264520-264582,264657-264712,264797-264901,265021-265077,265336-265437,265578-265626,265777-265845,265952-266029	AT1G01710.1 CDS AT1G01710 ID=AT1G01710.1; Parent=AT1G01710; Name=AT1G01710.1; Note=acyl-CoA thioesterase II; conf_class=2; computational_description=Acyl-CoA thioesterase family protein%3B FUNCTIONS IN: cyclic nucleotide binding%2C acyl-CoA thioesterase activity%3B INVOLVED IN: acyl-CoA metabolic process%3B LOCATED IN: peroxisome%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595)%2C Cyclic nucleotide-binding-like (InterPro:IPR018490)%2C Acyl-CoA thioesterase (InterPro:IPR003703)%2C RmlC-like jelly roll fold (InterPro:IPR014710)%3B BEST Arabidopsis thaliana protein match is: Acyl-CoA thioesterase family protein (TAIR:AT4G00520.2)%3B Has 3628 Blast hits to 3595 proteins in 999 species: Archae - 0%3B Bacteria - 1940%3B Metazoa - 444%3B Fungi - 348%3B Plants - 71%3B Viruses - 0%3B Other Eukaryotes - 825 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14701923, PMID:15333753, PMID:17951448, PMID:18931141, PMID:20736450, PMID:23505340, PMID:25253886, locus:2198205; locus_type=protein_coding
AT1G01715.1	chr1:000266517	0.0	W/266517-266724,267293-267504	AT1G01715.1 CDS AT1G01715 ID=AT1G01715.1; Parent=AT1G01715; Name=AT1G01715.1; Note=hypothetical protein; locus_type=protein_coding
AT1G01715.2	chr1:000266517	0.0	W/266517-266724,267293-267504	AT1G01715.2 CDS AT1G01715 ID=AT1G01715.2; Parent=AT1G01715; Name=AT1G01715.2; Note=hypothetical protein; locus_type=protein_coding
AT1G04043.1	chr1:000267993	0.0	C/267993-268336	AT1G04043.1 antisense_lncRNA AT1G04043 ID=AT1G04043.1; Parent=AT1G04043; Name=AT1G04043.1; description=Natural antisense transcript overlaps with AT1G01720; Note=Natural antisense transcript overlaps with AT1G01720; locus_type=antisense_long_noncoding_rna
AT1G01720.1	chr1:000268471	0.0	W/268471-268630,268717-268994,269083-269514	AT1G01720.1 CDS AT1G01720 ID=AT1G01720.1; Parent=AT1G01720; Name=AT1G01720.1; Note=NAC (No Apical Meristem) domain transcriptional regulator superfamily protein; curator_summary=Belongs to a large family of putative transcriptional activators with NAC domain. Transcript level increases in response to wounding and abscisic acid. ATAF1 attentuates ABA signaling and sythesis. Mutants are hyposensitive to ABA.; conf_class=2; symbol=ATAF1; computational_description=ATAF1%3B CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441)%3B BEST Arabidopsis thaliana protein match is: NAC domain containing protein 32 (TAIR:AT1G77450.1)%3B Has 3043 Blast hits to 3037 proteins in 75 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 3043%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:11516145, PMID:12646039, PMID:14750526, PMID:15029955, PMID:15108305, PMID:17031511, PMID:17114348, PMID:17098812, PMID:17619150, PMID:18775970, PMID:19549833, PMID:19704545, PMID:19752887, PMID:19737096, PMID:20736450, PMID:21135241, PMID:22580707, PMID:23079980, PMID:24057250, PMID:23951554, PMID:23798027, PMID:25666276, locus:2198225; locus_type=protein_coding
AT1G01725.1	chr1:000270016	0.0	C/270016-270090,270622-270735	AT1G01725.1 CDS AT1G01725 ID=AT1G01725.1; Parent=AT1G01725; Name=AT1G01725.1; Note=adenylosuccinate synthetase; conf_class=1; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 14 growth stages%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G00530.1)%3B Has 20 Blast hits to 20 proteins in 7 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 20%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:18650403, PMID:18775970, locus:505006092; locus_type=protein_coding
AT1G04047.1	chr1:000270067	0.0	W/270067-270517	AT1G04047.1 antisense_lncRNA AT1G04047 ID=AT1G04047.1; Parent=AT1G04047; Name=AT1G04047.1; description=Natural antisense transcript overlaps with AT1G01725; Note=Natural antisense transcript overlaps with AT1G01725; locus_type=antisense_long_noncoding_rna
AT1G01730.1	chr1:000271002	0.0	W/271002-271289,271379-271433,271541-271872	AT1G01730.1 CDS AT1G01730 ID=AT1G01730.1; Parent=AT1G01730; Name=AT1G01730.1; Note=hypothetical protein; conf_class=3; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B Has 42 Blast hits to 42 proteins in 17 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 5%3B Fungi - 1%3B Plants - 34%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:16911220, PMID:18650403, locus:2198145; locus_type=protein_coding
AT1G01740.1	chr1:000272111	0.0	C/272111-272362,272445-272555,272651-272983,273064-273149,273234-273339,273429-273562,273653-273788,273863-274083,274167-274239	AT1G01740.1 CDS AT1G01740 ID=AT1G01740.1; Parent=AT1G01740; Name=AT1G01740.1; Note=kinase with tetratricopeptide repeat domain-containing protein; conf_class=4; symbol=BSK4; full_name=brassinosteroid-signaling kinase 4; computational_description=Protein kinase protein with tetratricopeptide repeat domain%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C binding%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%2C N-terminal protein myristoylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%2C Protein kinase-like domain (InterPro:IPR011009)%3B BEST Arabidopsis thaliana protein match is: BR-signaling kinase 3 (TAIR:AT4G00710.1)%3B Has 33834 Blast hits to 33303 proteins in 1392 species: Archae - 10%3B Bacteria - 2383%3B Metazoa - 7709%3B Fungi - 204%3B Plants - 21978%3B Viruses - 102%3B Other Eukaryotes - 1448 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:12805585, PMID:12912986, PMID:18653891, PMID:21477822, locus:2198160; locus_type=protein_coding
AT1G01740.2	chr1:000272111	0.0	C/272111-272362,272445-272555,272651-272983,273064-273149,273234-273339,273429-273562,273653-273788,273863-274083,274167-274239	AT1G01740.2 CDS AT1G01740 ID=AT1G01740.2; Parent=AT1G01740; Name=AT1G01740.2; Note=kinase with tetratricopeptide repeat domain-containing protein; conf_class=4; symbol=BSK4; full_name=brassinosteroid-signaling kinase 4; computational_description=Protein kinase protein with tetratricopeptide repeat domain%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C binding%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%2C N-terminal protein myristoylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%2C Protein kinase-like domain (InterPro:IPR011009)%3B BEST Arabidopsis thaliana protein match is: BR-signaling kinase 3 (TAIR:AT4G00710.1)%3B Has 33834 Blast hits to 33303 proteins in 1392 species: Archae - 10%3B Bacteria - 2383%3B Metazoa - 7709%3B Fungi - 204%3B Plants - 21978%3B Viruses - 102%3B Other Eukaryotes - 1448 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:12805585, PMID:12912986, PMID:18653891, PMID:21477822, locus:2198160; locus_type=protein_coding
AT1G01740.3	chr1:000272111	0.0	C/272111-272362,272445-272555,272651-272983,273064-273149,273234-273339,273429-273562,273653-273788,273863-273922	AT1G01740.3 CDS AT1G01740 ID=AT1G01740.3; Parent=AT1G01740; Name=AT1G01740.3; Note=kinase with tetratricopeptide repeat domain-containing protein; symbol=BSK4; full_name=brassinosteroid-signaling kinase 4; computational_description=Protein kinase protein with tetratricopeptide repeat domain%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C binding%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%2C N-terminal protein myristoylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%2C Protein kinase-like domain (InterPro:IPR011009)%3B BEST Arabidopsis thaliana protein match is: BR-signaling kinase 3 (TAIR:AT4G00710.1)%3B Has 33834 Blast hits to 33303 proteins in 1392 species: Archae - 10%3B Bacteria - 2383%3B Metazoa - 7709%3B Fungi - 204%3B Plants - 21978%3B Viruses - 102%3B Other Eukaryotes - 1448 (source: NCBI BLink).; Dbxref=PMID:12805585, PMID:12912986, PMID:18653891, PMID:21477822, locus:2198160; locus_type=protein_coding
AT1G01740.4	chr1:000272111	0.0	C/272111-272362,272445-272555,272651-272983,273064-273149,273234-273339,273429-273562,273653-273788,273863-273922	AT1G01740.4 CDS AT1G01740 ID=AT1G01740.4; Parent=AT1G01740; Name=AT1G01740.4; Note=kinase with tetratricopeptide repeat domain-containing protein; symbol=BSK4; full_name=brassinosteroid-signaling kinase 4; computational_description=Protein kinase protein with tetratricopeptide repeat domain%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C binding%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%2C N-terminal protein myristoylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%2C Protein kinase-like domain (InterPro:IPR011009)%3B BEST Arabidopsis thaliana protein match is: BR-signaling kinase 3 (TAIR:AT4G00710.1)%3B Has 33834 Blast hits to 33303 proteins in 1392 species: Archae - 10%3B Bacteria - 2383%3B Metazoa - 7709%3B Fungi - 204%3B Plants - 21978%3B Viruses - 102%3B Other Eukaryotes - 1448 (source: NCBI BLink).; Dbxref=PMID:12805585, PMID:12912986, PMID:18653891, PMID:21477822, locus:2198160; locus_type=protein_coding
AT1G01740.5	chr1:000272111	0.0	C/272111-272362,272445-272531,272651-272983,273064-273149,273234-273339,273429-273562,273653-273788,273863-274083,274167-274239	AT1G01740.5 CDS AT1G01740 ID=AT1G01740.5; Parent=AT1G01740; Name=AT1G01740.5; Note=kinase with tetratricopeptide repeat domain-containing protein; symbol=BSK4; full_name=brassinosteroid-signaling kinase 4; computational_description=Protein kinase protein with tetratricopeptide repeat domain%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C binding%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%2C N-terminal protein myristoylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%2C Protein kinase-like domain (InterPro:IPR011009)%3B BEST Arabidopsis thaliana protein match is: BR-signaling kinase 3 (TAIR:AT4G00710.1)%3B Has 33834 Blast hits to 33303 proteins in 1392 species: Archae - 10%3B Bacteria - 2383%3B Metazoa - 7709%3B Fungi - 204%3B Plants - 21978%3B Viruses - 102%3B Other Eukaryotes - 1448 (source: NCBI BLink).; Dbxref=PMID:12805585, PMID:12912986, PMID:18653891, PMID:21477822, locus:2198160; locus_type=protein_coding
AT1G04053.1	chr1:000275473	0.0	C/275473-276319	AT1G04053.1 antisense_lncRNA AT1G04053 ID=AT1G04053.1; Parent=AT1G04053; Name=AT1G04053.1; description=Natural antisense transcript overlaps with AT1G01750; Note=Natural antisense transcript overlaps with AT1G01750; locus_type=antisense_long_noncoding_rna
AT1G01750.1	chr1:000275528	0.0	W/275528-275530,275632-275897,275973-276126	AT1G01750.1 CDS AT1G01750 ID=AT1G01750.1; Parent=AT1G01750; Name=AT1G01750.1; Note=actin depolymerizing factor 11; conf_class=1; symbol=ADF11; full_name=actin depolymerizing factor 11; computational_description=actin depolymerizing factor 11 (ADF11)%3B FUNCTIONS IN: actin binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: intracellular%3B EXPRESSED IN: 6 plant structures%3B EXPRESSED DURING: 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Actin-binding%2C cofilin/tropomyosin type (InterPro:IPR002108)%3B BEST Arabidopsis thaliana protein match is: actin depolymerizing factor 8 (TAIR:AT4G00680.1)%3B Has 1654 Blast hits to 1631 proteins in 274 species: Archae - 0%3B Bacteria - 5%3B Metazoa - 781%3B Fungi - 163%3B Plants - 515%3B Viruses - 0%3B Other Eukaryotes - 190 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16648215, PMID:17220200, PMID:17408486, PMID:17877706, PMID:22253603, locus:2198175; locus_type=protein_coding
AT1G01750.2	chr1:000275614	0.0	W/275614-275897,275973-276126	AT1G01750.2 CDS AT1G01750 ID=AT1G01750.2; Parent=AT1G01750; Name=AT1G01750.2; Note=actin depolymerizing factor 11; symbol=ADF11; full_name=actin depolymerizing factor 11; computational_description=actin depolymerizing factor 11 (ADF11)%3B FUNCTIONS IN: actin binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: intracellular%3B EXPRESSED IN: 6 plant structures%3B EXPRESSED DURING: 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Actin-binding%2C cofilin/tropomyosin type (InterPro:IPR002108)%3B BEST Arabidopsis thaliana protein match is: actin depolymerizing factor 8 (TAIR:AT4G00680.1)%3B Has 1654 Blast hits to 1631 proteins in 274 species: Archae - 0%3B Bacteria - 5%3B Metazoa - 781%3B Fungi - 163%3B Plants - 515%3B Viruses - 0%3B Other Eukaryotes - 190 (source: NCBI BLink).; Dbxref=PMID:16648215, PMID:17220200, PMID:17408486, PMID:17877706, PMID:22253603, locus:2198175; locus_type=protein_coding
AT1G01760.1	chr1:000276412	0.0	C/276412-276519,276706-276793,276870-276989,277077-277153,277232-277401,277493-277606,277717-277863,277947-278252,278316-278448	AT1G01760.1 CDS AT1G01760 ID=AT1G01760.1; Parent=AT1G01760; Name=AT1G01760.1; Note=denosine deaminases acting on tRNA; conf_class=3; Alias=AtTAD1, TAD1, ortholog of yeast Tad1; computational_description=adenosine deaminases%3BRNA binding%3BRNA binding%3Badenosine deaminases%3B FUNCTIONS IN: RNA binding%2C adenosine deaminase activity%3B INVOLVED IN: RNA processing%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Adenosine deaminase/editase (InterPro:IPR002466)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:20736450, PMID:23355609, locus:2198185; locus_type=protein_coding
AT1G01760.3	chr1:000276412	0.0	C/276412-276519,276706-276793,276870-276989,277077-277153,277232-277401,277493-277606,277717-277863,277947-278252,278316-278487	AT1G01760.3 CDS AT1G01760 ID=AT1G01760.3; Parent=AT1G01760; Name=AT1G01760.3; Note=denosine deaminases acting on tRNA; Alias=AtTAD1, TAD1, ortholog of yeast Tad1; computational_description=adenosine deaminases%3BRNA binding%3BRNA binding%3Badenosine deaminases%3B FUNCTIONS IN: RNA binding%2C adenosine deaminase activity%3B INVOLVED IN: RNA processing%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Adenosine deaminase/editase (InterPro:IPR002466)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=PMID:20736450, PMID:23355609, locus:2198185; locus_type=protein_coding
AT1G01760.4	chr1:000276412	0.0	C/276412-276519,276706-276793,276870-276989,277077-277153,277232-277401,277493-277606,277717-277863,277947-278252,278316-278448	AT1G01760.4 CDS AT1G01760 ID=AT1G01760.4; Parent=AT1G01760; Name=AT1G01760.4; Note=denosine deaminases acting on tRNA; Alias=AtTAD1, TAD1, ortholog of yeast Tad1; Dbxref=PMID:20736450, PMID:23355609, locus:2198185; computational_description=adenosine deaminases%3BRNA binding%3BRNA binding%3Badenosine deaminases%3B FUNCTIONS IN: RNA binding%2C adenosine deaminase activity%3B INVOLVED IN: RNA processing%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Adenosine deaminase/editase (InterPro:IPR002466)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; locus_type=protein_coding
AT1G04057.1	chr1:000276543	0.0	W/276543-276729	AT1G04057.1 antisense_RNA AT1G04057 ID=AT1G04057.1; Parent=AT1G04057; Name=AT1G04057.1; description=Natural antisense transcript overlaps with AT1G01760; Note=Natural antisense transcript overlaps with AT1G01760; locus_type=antisense_rna
AT1G01760.2	chr1:000276640	0.0	C/276640-276793,276870-276989,277077-277153,277232-277401,277493-277606,277717-277863,277947-278252,278316-278487	AT1G01760.2 CDS AT1G01760 ID=AT1G01760.2; Parent=AT1G01760; Name=AT1G01760.2; Note=denosine deaminases acting on tRNA; Alias=AtTAD1, TAD1, ortholog of yeast Tad1; computational_description=adenosine deaminases%3BRNA binding%3BRNA binding%3Badenosine deaminases%3B FUNCTIONS IN: RNA binding%2C adenosine deaminase activity%3B INVOLVED IN: RNA processing%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Adenosine deaminase/editase (InterPro:IPR002466)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=PMID:20736450, PMID:23355609, locus:2198185; locus_type=protein_coding
AT1G01770.1	chr1:000278759	0.0	W/278759-278809,278887-279088,279166-279240,279327-279425,279536-279576,279797-279910,279974-280088,280180-280370,280449-280568,280657-280737,280889-281121,281309-281348,281438-281536,281759-282189,282484-282490	AT1G01770.1 CDS AT1G01770 ID=AT1G01770.1; Parent=AT1G01770; Name=AT1G01770.1; Note=propionyl-CoA carboxylase; conf_class=2; computational_description=unknown protein%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1446 (InterPro:IPR010839)%3B Has 1597 Blast hits to 1509 proteins in 306 species: Archae - 4%3B Bacteria - 843%3B Metazoa - 22%3B Fungi - 131%3B Plants - 31%3B Viruses - 0%3B Other Eukaryotes - 566 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15642518, PMID:15659355, PMID:17573466, locus:2198195; locus_type=protein_coding
AT1G01780.1	chr1:000282919	0.0	W/282919-283053,283132-283231,283314-283336,283444-283533,283813-284082	AT1G01780.1 CDS AT1G01780 ID=AT1G01780.1; Parent=AT1G01780; Name=AT1G01780.1; Note=GATA type zinc finger transcription factor family protein; curator_summary=Encodes a member of the Arabidopsis LIM proteins: a family of actin bundlers with distinct expression patterns. WLIM1%2C WLIM2a%2C and WLIM2b are widely expressed%2C whereas PLIM2a%2C PLIM2b%2C and PLIM2c are predominantly expressed in pollen. Regulates actin cytoskeleton organization.; conf_class=1; symbol=PLIM2b; full_name=PLIM2b; computational_description=GATA type zinc finger transcription factor family protein%3B FUNCTIONS IN: zinc ion binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C LIM-type (InterPro:IPR001781)%3B BEST Arabidopsis thaliana protein match is: GATA type zinc finger transcription factor family protein (TAIR:AT2G45800.1)%3B Has 4819 Blast hits to 3002 proteins in 170 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 4032%3B Fungi - 22%3B Plants - 446%3B Viruses - 0%3B Other Eukaryotes - 319 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15642518, PMID:15659355, PMID:15531708, PMID:15807784, PMID:17573466, PMID:18775970, PMID:20817848, PMID:22209219, locus:2198210; locus_type=protein_coding
AT1G01790.1	chr1:000284781	0.0	W/284781-286351,286452-286623,286717-286807,286997-287133,287221-287280,287395-287514,287642-287710,287789-287854,288087-288176,288401-288505,288593-288721,288882-289091,289237-289386,289539-289592,289718-289776,290028-290094,290170-290346,290439-290495,290578-290652,290747-290869	AT1G01790.1 CDS AT1G01790 ID=AT1G01790.1; Parent=AT1G01790; Name=AT1G01790.1; Note=K+ efflux antiporter 1; curator_summary=K efflux antiporter KEA1; conf_class=2; symbol=KEA1; Alias=ATKEA1, K+ EFFLUX ANTIPORTER 1; full_name=K+ efflux antiporter 1; computational_description=K+ efflux antiporter 1 (KEA1)%3B FUNCTIONS IN: potassium:hydrogen antiporter activity%2C potassium ion transmembrane transporter activity%3B INVOLVED IN: potassium ion transport%2C cation transport%2C metabolic process%2C transmembrane transport%3B LOCATED IN: chloroplast%2C chloroplast envelope%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: K+/H+ exchanger (InterPro:IPR004771)%2C Cation/H+ exchanger (InterPro:IPR006153)%2C NAD(P)-binding domain (InterPro:IPR016040)%2C Regulator of K+ conductance%2C N-terminal (InterPro:IPR003148)%3B BEST Arabidopsis thaliana protein match is: K+ efflux antiporter 2 (TAIR:AT4G00630.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11500563, PMID:12766230, PMID:15347787, PMID:15901827, PMID:16460505, PMID:16944199, PMID:17351049, PMID:17660356, PMID:17919328, PMID:18650403, PMID:18775970, PMID:22551943, PMID:24278440, PMID:24794527, locus:2198215; locus_type=protein_coding
AT1G01790.2	chr1:000284781	0.0	W/284781-286351,286452-286623,286717-286807,286997-287133,287221-287280,287395-287514,287642-287710,287789-287854,288087-288176,288401-288505,288593-288721,288882-289091,289237-289386,289539-289592,289718-289776,290028-290094,290170-290346,290439-290495,290578-290652,290747-290869	AT1G01790.2 CDS AT1G01790 ID=AT1G01790.2; Parent=AT1G01790; Name=AT1G01790.2; Note=K+ efflux antiporter 1; symbol=KEA1; Alias=ATKEA1, K+ EFFLUX ANTIPORTER 1; full_name=K+ efflux antiporter 1; Dbxref=PMID:11500563, PMID:12766230, PMID:15347787, PMID:15901827, PMID:16460505, PMID:16944199, PMID:17351049, PMID:17660356, PMID:17919328, PMID:18650403, PMID:18775970, PMID:22551943, PMID:24278440, PMID:24794527, locus:2198215; curator_summary=K efflux antiporter KEA1; computational_description=K+ efflux antiporter 1 (KEA1)%3B FUNCTIONS IN: potassium:hydrogen antiporter activity%2C potassium ion transmembrane transporter activity%3B INVOLVED IN: potassium ion transport%2C cation transport%2C metabolic process%2C transmembrane transport%3B LOCATED IN: chloroplast%2C chloroplast envelope%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: K+/H+ exchanger (InterPro:IPR004771)%2C Cation/H+ exchanger (InterPro:IPR006153)%2C NAD(P)-binding domain (InterPro:IPR016040)%2C Regulator of K+ conductance%2C N-terminal (InterPro:IPR003148)%3B BEST Arabidopsis thaliana protein match is: K+ efflux antiporter 2 (TAIR:AT4G00630.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; locus_type=protein_coding
AT1G04063.1	chr1:000291594	0.0	C/291594-292061	AT1G04063.1 lnc_RNA AT1G04063 ID=AT1G04063.1; Parent=AT1G04063; Name=AT1G04063.1; locus_type=long_noncoding_rna
AT1G01800.1	chr1:000293396	0.0	W/293396-293409,293500-293752,294055-294120,294210-294386,294511-294888	AT1G01800.1 CDS AT1G01800 ID=AT1G01800.1; Parent=AT1G01800; Name=AT1G01800.1; Note=NAD(P)-binding Rossmann-fold superfamily protein; conf_class=2; computational_description=NAD(P)-binding Rossmann-fold superfamily protein%3B FUNCTIONS IN: oxidoreductase activity%2C binding%2C catalytic activity%3B INVOLVED IN: oxidation reduction%2C metabolic process%3B LOCATED IN: plant-type cell wall%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040)%2C Glucose/ribitol dehydrogenase (InterPro:IPR002347)%2C Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198)%3B BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G61220.1)%3B Has 66869 Blast hits to 66825 proteins in 3161 species: Archae - 673%3B Bacteria - 45998%3B Metazoa - 3911%3B Fungi - 3425%3B Plants - 2362%3B Viruses - 0%3B Other Eukaryotes - 10500 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16287169, PMID:20736450, locus:2198230; locus_type=protein_coding
AT1G01800.2	chr1:000293595	0.0	W/293595-293756,294055-294120,294210-294386,294511-294888	AT1G01800.2 CDS AT1G01800 ID=AT1G01800.2; Parent=AT1G01800; Name=AT1G01800.2; Note=NAD(P)-binding Rossmann-fold superfamily protein; conf_class=3; computational_description=NAD(P)-binding Rossmann-fold superfamily protein%3B FUNCTIONS IN: oxidoreductase activity%2C binding%2C catalytic activity%3B INVOLVED IN: oxidation reduction%2C metabolic process%3B LOCATED IN: plant-type cell wall%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040)%2C Glucose/ribitol dehydrogenase (InterPro:IPR002347)%2C Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198)%3B BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G61220.1)%3B Has 66869 Blast hits to 66825 proteins in 3161 species: Archae - 673%3B Bacteria - 45998%3B Metazoa - 3911%3B Fungi - 3425%3B Plants - 2362%3B Viruses - 0%3B Other Eukaryotes - 10500 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16287169, PMID:20736450, locus:2198230; locus_type=protein_coding
AT1G01810.1	chr1:000295242	0.0	W/295242-295724	AT1G01810.1 CDS AT1G01810 ID=AT1G01810.1; Parent=AT1G01810; Name=AT1G01810.1; Note=hypothetical protein; conf_class=1; computational_description=unknown protein%3B Has 12 Blast hits to 12 proteins in 5 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 5%3B Fungi - 0%3B Plants - 7%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:2198240; locus_type=protein_coding
AT1G01820.1	chr1:000296213	0.0	C/296213-296248,296362-296535,296626-296700,296782-296862,296951-297025,297101-297175,297532-297723	AT1G01820.1 CDS AT1G01820 ID=AT1G01820.1; Parent=AT1G01820; Name=AT1G01820.1; Note=peroxin 11c; curator_summary=member of the peroxin11 (PEX11) gene family%2C integral to peroxisome membrane%2C controls peroxisome proliferation.; conf_class=2; symbol=PEX11C; full_name=peroxin 11c; computational_description=peroxin 11c (PEX11C)%3B CONTAINS InterPro DOMAIN/s: Peroxisomal biogenesis factor 11 (InterPro:IPR008733)%3B BEST Arabidopsis thaliana protein match is: peroxin 11D (TAIR:AT2G45740.3)%3B Has 289 Blast hits to 289 proteins in 81 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 46%3B Fungi - 41%3B Plants - 179%3B Viruses - 0%3B Other Eukaryotes - 23 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15531708, PMID:16636080, PMID:17220199, PMID:17478547, locus:2198150; locus_type=protein_coding
AT1G01830.1	chr1:000298717	0.0	C/298717-300441	AT1G01830.1 CDS AT1G01830 ID=AT1G01830.1; Parent=AT1G01830; Name=AT1G01830.1; Note=ARM repeat superfamily protein; conf_class=2; computational_description=ARM repeat superfamily protein%3B FUNCTIONS IN: binding%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989)%2C Armadillo (InterPro:IPR000225)%2C Armadillo-type fold (InterPro:IPR016024)%3B BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT2G45720.2)%3B Has 3429 Blast hits to 2144 proteins in 215 species: Archae - 2%3B Bacteria - 14%3B Metazoa - 502%3B Fungi - 465%3B Plants - 2072%3B Viruses - 0%3B Other Eukaryotes - 374 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12946625, locus:2198235; locus_type=protein_coding
AT1G01830.2	chr1:000298717	0.0	C/298717-300441	AT1G01830.2 CDS AT1G01830 ID=AT1G01830.2; Parent=AT1G01830; Name=AT1G01830.2; Note=ARM repeat superfamily protein; conf_class=2; computational_description=ARM repeat superfamily protein%3B FUNCTIONS IN: binding%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989)%2C Armadillo (InterPro:IPR000225)%2C Armadillo-type fold (InterPro:IPR016024)%3B BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT2G45720.2)%3B Has 3429 Blast hits to 2144 proteins in 215 species: Archae - 2%3B Bacteria - 14%3B Metazoa - 502%3B Fungi - 465%3B Plants - 2072%3B Viruses - 0%3B Other Eukaryotes - 374 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12946625, locus:2198235; locus_type=protein_coding
AT1G01830.3	chr1:000298717	0.0	C/298717-300441	AT1G01830.3 CDS AT1G01830 ID=AT1G01830.3; Parent=AT1G01830; Name=AT1G01830.3; Note=ARM repeat superfamily protein; conf_class=2; computational_description=ARM repeat superfamily protein%3B FUNCTIONS IN: binding%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989)%2C Armadillo (InterPro:IPR000225)%2C Armadillo-type fold (InterPro:IPR016024)%3B BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT2G45720.2)%3B Has 3429 Blast hits to 2144 proteins in 215 species: Archae - 2%3B Bacteria - 14%3B Metazoa - 502%3B Fungi - 465%3B Plants - 2072%3B Viruses - 0%3B Other Eukaryotes - 374 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12946625, locus:2198235; locus_type=protein_coding
AT1G04067.1	chr1:000303463	0.0	C/303463-303977	AT1G04067.1 antisense_lncRNA AT1G04067 ID=AT1G04067.1; Parent=AT1G04067; Name=AT1G04067.1; description=Natural antisense transcript overlaps with AT1G01840; Note=Natural antisense transcript overlaps with AT1G01840; locus_type=antisense_long_noncoding_rna
AT1G01840.1	chr1:000303650	0.0	W/303650-304108	AT1G01840.1 CDS AT1G01840 ID=AT1G01840.1; Parent=AT1G01840; Name=AT1G01840.1; Note=AP2-like ethylene-responsive transcription factor SNZ; conf_class=1; computational_description=unknown protein%3B Has 23 Blast hits to 23 proteins in 9 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 23%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15699063, locus:2198170; locus_type=protein_coding
AT1G01860.1	chr1:000304439	0.0	C/304439-304504,304697-304807,304880-304963,305038-305090,305174-305258,305347-305442,305547-305702,305785-305934,306045-306275	AT1G01860.1 CDS AT1G01860 ID=AT1G01860.1; Parent=AT1G01860; Name=AT1G01860.1; Note=Ribosomal RNA adenine dimethylase family protein; curator_summary=dimethyladenosine transferase; conf_class=2; symbol=PFC1; full_name=PALEFACE 1; computational_description=PALEFACE 1 (PFC1)%3B FUNCTIONS IN: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity%3B INVOLVED IN: response to cold%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal RNA adenine methylase transferase%2C N-terminal (InterPro:IPR020598)%2C Ribosomal RNA adenine methylase transferase%2C conserved site (InterPro:IPR020596)%2C Ribosomal RNA adenine methylase transferase (InterPro:IPR001737)%3B BEST Arabidopsis thaliana protein match is: Ribosomal RNA adenine dimethylase family protein (TAIR:AT5G66360.2)%3B Has 9632 Blast hits to 9628 proteins in 3006 species: Archae - 228%3B Bacteria - 6144%3B Metazoa - 264%3B Fungi - 142%3B Plants - 116%3B Viruses - 0%3B Other Eukaryotes - 2738 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9596631, PMID:14576160, PMID:19929881, PMID:20736450, locus:2025437; locus_type=protein_coding
AT1G01860.2	chr1:000304439	0.0	C/304439-304504,304697-304807,304880-304963,305038-305090,305174-305258,305347-305442,305547-305702,305785-305928	AT1G01860.2 CDS AT1G01860 ID=AT1G01860.2; Parent=AT1G01860; Name=AT1G01860.2; Note=Ribosomal RNA adenine dimethylase family protein; symbol=PFC1; full_name=PALEFACE 1; curator_summary=dimethyladenosine transferase; computational_description=PALEFACE 1 (PFC1)%3B FUNCTIONS IN: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity%3B INVOLVED IN: response to cold%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal RNA adenine methylase transferase%2C N-terminal (InterPro:IPR020598)%2C Ribosomal RNA adenine methylase transferase%2C conserved site (InterPro:IPR020596)%2C Ribosomal RNA adenine methylase transferase (InterPro:IPR001737)%3B BEST Arabidopsis thaliana protein match is: Ribosomal RNA adenine dimethylase family protein (TAIR:AT5G66360.2)%3B Has 9632 Blast hits to 9628 proteins in 3006 species: Archae - 228%3B Bacteria - 6144%3B Metazoa - 264%3B Fungi - 142%3B Plants - 116%3B Viruses - 0%3B Other Eukaryotes - 2738 (source: NCBI BLink).; Dbxref=PMID:9596631, PMID:14576160, PMID:19929881, PMID:20736450, locus:2025437; locus_type=protein_coding
AT1G04073.1	chr1:000304481	0.0	W/304481-304713	AT1G04073.1 antisense_lncRNA AT1G04073 ID=AT1G04073.1; Parent=AT1G04073; Name=AT1G04073.1; description=Natural antisense transcript overlaps with AT1G01860; Note=Natural antisense transcript overlaps with AT1G01860; locus_type=antisense_long_noncoding_rna
AT1G01860.3	chr1:000304622	0.0	C/304622-304807,304880-304963,305038-305090,305174-305258,305347-305442,305547-305702,305785-305928	AT1G01860.3 CDS AT1G01860 ID=AT1G01860.3; Parent=AT1G01860; Name=AT1G01860.3; Note=Ribosomal RNA adenine dimethylase family protein; symbol=PFC1; full_name=PALEFACE 1; curator_summary=dimethyladenosine transferase; computational_description=PALEFACE 1 (PFC1)%3B FUNCTIONS IN: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity%3B INVOLVED IN: response to cold%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal RNA adenine methylase transferase%2C N-terminal (InterPro:IPR020598)%2C Ribosomal RNA adenine methylase transferase%2C conserved site (InterPro:IPR020596)%2C Ribosomal RNA adenine methylase transferase (InterPro:IPR001737)%3B BEST Arabidopsis thaliana protein match is: Ribosomal RNA adenine dimethylase family protein (TAIR:AT5G66360.2)%3B Has 9632 Blast hits to 9628 proteins in 3006 species: Archae - 228%3B Bacteria - 6144%3B Metazoa - 264%3B Fungi - 142%3B Plants - 116%3B Viruses - 0%3B Other Eukaryotes - 2738 (source: NCBI BLink).; Dbxref=PMID:9596631, PMID:14576160, PMID:19929881, PMID:20736450, locus:2025437; locus_type=protein_coding
AT1G01860.4	chr1:000304622	0.0	C/304622-304807,304880-304963,305038-305090,305174-305258,305347-305442,305547-305702,305785-305934,306045-306275	AT1G01860.4 CDS AT1G01860 ID=AT1G01860.4; Parent=AT1G01860; Name=AT1G01860.4; Note=Ribosomal RNA adenine dimethylase family protein; symbol=PFC1; full_name=PALEFACE 1; curator_summary=dimethyladenosine transferase; computational_description=PALEFACE 1 (PFC1)%3B FUNCTIONS IN: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity%3B INVOLVED IN: response to cold%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal RNA adenine methylase transferase%2C N-terminal (InterPro:IPR020598)%2C Ribosomal RNA adenine methylase transferase%2C conserved site (InterPro:IPR020596)%2C Ribosomal RNA adenine methylase transferase (InterPro:IPR001737)%3B BEST Arabidopsis thaliana protein match is: Ribosomal RNA adenine dimethylase family protein (TAIR:AT5G66360.2)%3B Has 9632 Blast hits to 9628 proteins in 3006 species: Archae - 228%3B Bacteria - 6144%3B Metazoa - 264%3B Fungi - 142%3B Plants - 116%3B Viruses - 0%3B Other Eukaryotes - 2738 (source: NCBI BLink).; Dbxref=PMID:9596631, PMID:14576160, PMID:19929881, PMID:20736450, locus:2025437; locus_type=protein_coding
AT1G01860.5	chr1:000305151	0.0	C/305151-305258,305347-305442,305547-305702,305785-305934,306045-306275	AT1G01860.5 CDS AT1G01860 ID=AT1G01860.5; Parent=AT1G01860; Name=AT1G01860.5; Note=Ribosomal RNA adenine dimethylase family protein; symbol=PFC1; full_name=PALEFACE 1; curator_summary=dimethyladenosine transferase; computational_description=PALEFACE 1 (PFC1)%3B FUNCTIONS IN: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity%3B INVOLVED IN: response to cold%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal RNA adenine methylase transferase%2C N-terminal (InterPro:IPR020598)%2C Ribosomal RNA adenine methylase transferase%2C conserved site (InterPro:IPR020596)%2C Ribosomal RNA adenine methylase transferase (InterPro:IPR001737)%3B BEST Arabidopsis thaliana protein match is: Ribosomal RNA adenine dimethylase family protein (TAIR:AT5G66360.2)%3B Has 9632 Blast hits to 9628 proteins in 3006 species: Archae - 228%3B Bacteria - 6144%3B Metazoa - 264%3B Fungi - 142%3B Plants - 116%3B Viruses - 0%3B Other Eukaryotes - 2738 (source: NCBI BLink).; Dbxref=PMID:9596631, PMID:14576160, PMID:19929881, PMID:20736450, locus:2025437; locus_type=protein_coding
AT1G01870.1	chr1:000306384	0.0	W/306384-306456	AT1G01870.1 tRNA AT1G01870 ID=AT1G01870.1; Parent=AT1G01870; Note=tRNA-Val; computational_description=tRNA-Val (anticodon: TAC); Dbxref=PMID:8980477, PMID:23066098, PMID:8980477, locus:3689108; Name=AT1G01870.1; locus_type=pre_trna
AT1G01880.1	chr1:000306558	0.0	C/306558-306800,306893-307359,307441-307805,307889-308070,308148-308318,308397-308573,308797-308991	AT1G01880.1 CDS AT1G01880 ID=AT1G01880.1; Parent=AT1G01880; Name=AT1G01880.1; Note=5'-3' exonuclease family protein; curator_summary=Encodes one of two GEN1 homologs in Arabidopsis. It is a member of the class IV Rad2/XPG family of nucleases that processes Holliday junctions in a manner analogous to the HJ resolvases of phages%2C archaea%2C and bacteria.; conf_class=4; Alias=AtGEN1, GEN1, ortholog of HsGEN1; computational_description=5'-3' exonuclease family protein%3B FUNCTIONS IN: DNA binding%2C catalytic activity%2C nuclease activity%3B INVOLVED IN: DNA repair%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: XPG N-terminal (InterPro:IPR006085)%2C DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084)%2C 5'-3' exonuclease%2C C-terminal subdomain (InterPro:IPR020045)%2C Helix-hairpin-helix motif%2C class 2 (InterPro:IPR008918)%2C XPG/RAD2 endonuclease (InterPro:IPR006086)%3B BEST Arabidopsis thaliana protein match is: single-stranded DNA endonuclease family protein (TAIR:AT3G48900.2)%3B Has 2133 Blast hits to 1941 proteins in 373 species: Archae - 274%3B Bacteria - 9%3B Metazoa - 492%3B Fungi - 719%3B Plants - 217%3B Viruses - 17%3B Other Eukaryotes - 405 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:20736450, PMID:25037209, locus:2025447; locus_type=protein_coding
AT1G01880.2	chr1:000306558	0.0	C/306558-306800,306893-307359,307441-307805,307889-308070,308148-308318,308400-308573,308797-308991	AT1G01880.2 CDS AT1G01880 ID=AT1G01880.2; Parent=AT1G01880; Name=AT1G01880.2; Note=5'-3' exonuclease family protein; curator_summary=Encodes one of two GEN1 homologs in Arabidopsis. It is a member of the class IV Rad2/XPG family of nucleases that processes Holliday junctions in a manner analogous to the HJ resolvases of phages%2C archaea%2C and bacteria.; conf_class=5; Alias=AtGEN1, GEN1, ortholog of HsGEN1; computational_description=5'-3' exonuclease family protein%3B FUNCTIONS IN: DNA binding%2C catalytic activity%2C nuclease activity%3B INVOLVED IN: DNA repair%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: XPG N-terminal (InterPro:IPR006085)%2C DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084)%2C 5'-3' exonuclease%2C C-terminal subdomain (InterPro:IPR020045)%2C Helix-hairpin-helix motif%2C class 2 (InterPro:IPR008918)%2C XPG/RAD2 endonuclease (InterPro:IPR006086)%3B BEST Arabidopsis thaliana protein match is: single-stranded DNA endonuclease family protein (TAIR:AT3G48900.2)%3B Has 2133 Blast hits to 1941 proteins in 373 species: Archae - 274%3B Bacteria - 9%3B Metazoa - 492%3B Fungi - 719%3B Plants - 217%3B Viruses - 17%3B Other Eukaryotes - 405 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:20736450, PMID:25037209, locus:2025447; locus_type=protein_coding
AT1G01880.3	chr1:000306558	0.0	C/306558-306800,306893-307359,307441-307805,307889-308070,308148-308318,308397-308573,308797-308991	AT1G01880.3 CDS AT1G01880 ID=AT1G01880.3; Parent=AT1G01880; Name=AT1G01880.3; Note=5'-3' exonuclease family protein; Alias=AtGEN1, GEN1, ortholog of HsGEN1; Dbxref=PMID:20736450, PMID:25037209, locus:2025447; curator_summary=Encodes one of two GEN1 homologs in Arabidopsis. It is a member of the class IV Rad2/XPG family of nucleases that processes Holliday junctions in a manner analogous to the HJ resolvases of phages%2C archaea%2C and bacteria.; computational_description=5'-3' exonuclease family protein%3B FUNCTIONS IN: DNA binding%2C catalytic activity%2C nuclease activity%3B INVOLVED IN: DNA repair%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: XPG N-terminal (InterPro:IPR006085)%2C DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084)%2C 5'-3' exonuclease%2C C-terminal subdomain (InterPro:IPR020045)%2C Helix-hairpin-helix motif%2C class 2 (InterPro:IPR008918)%2C XPG/RAD2 endonuclease (InterPro:IPR006086)%3B BEST Arabidopsis thaliana protein match is: single-stranded DNA endonuclease family protein (TAIR:AT3G48900.2)%3B Has 2133 Blast hits to 1941 proteins in 373 species: Archae - 274%3B Bacteria - 9%3B Metazoa - 492%3B Fungi - 719%3B Plants - 217%3B Viruses - 17%3B Other Eukaryotes - 405 (source: NCBI BLink).; locus_type=protein_coding
AT1G01880.4	chr1:000306558	0.0	C/306558-306800,306893-307359,307441-307805,307889-308070,308148-308318,308397-308594	AT1G01880.4 CDS AT1G01880 ID=AT1G01880.4; Parent=AT1G01880; Name=AT1G01880.4; Note=5'-3' exonuclease family protein; Alias=AtGEN1, GEN1, ortholog of HsGEN1; curator_summary=Encodes one of two GEN1 homologs in Arabidopsis. It is a member of the class IV Rad2/XPG family of nucleases that processes Holliday junctions in a manner analogous to the HJ resolvases of phages%2C archaea%2C and bacteria.; computational_description=5'-3' exonuclease family protein%3B FUNCTIONS IN: DNA binding%2C catalytic activity%2C nuclease activity%3B INVOLVED IN: DNA repair%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: XPG N-terminal (InterPro:IPR006085)%2C DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084)%2C 5'-3' exonuclease%2C C-terminal subdomain (InterPro:IPR020045)%2C Helix-hairpin-helix motif%2C class 2 (InterPro:IPR008918)%2C XPG/RAD2 endonuclease (InterPro:IPR006086)%3B BEST Arabidopsis thaliana protein match is: single-stranded DNA endonuclease family protein (TAIR:AT3G48900.2)%3B Has 2133 Blast hits to 1941 proteins in 373 species: Archae - 274%3B Bacteria - 9%3B Metazoa - 492%3B Fungi - 719%3B Plants - 217%3B Viruses - 17%3B Other Eukaryotes - 405 (source: NCBI BLink).; Dbxref=PMID:20736450, PMID:25037209, locus:2025447; locus_type=protein_coding
AT1G01890.1	chr1:000309275	0.0	C/309275-309347	AT1G01890.1 tRNA AT1G01890 ID=AT1G01890.1; Parent=AT1G01890; Note=tRNA-Lys; computational_description=tRNA-Lys (anticodon: CTT); Dbxref=PMID:8980477, PMID:23066098, PMID:8980477, locus:3689111; Name=AT1G01890.1; locus_type=pre_trna
AT1TE01010	chr1:000309296	0.0	C/309296-309351	AT1TE01010 transposable_element AT1TE01010 ID=AT1TE01010; Name=AT1TE01010; Alias=ATLINEIII
AT1G01900.1	chr1:000310332	0.0	W/310332-310981,311337-313011	AT1G01900.1 CDS AT1G01900 ID=AT1G01900.1; Parent=AT1G01900; Name=AT1G01900.1; Note=subtilase family protein; curator_summary=Encodes AtSBT1.1%2C a subtilisin-like serine protease. Cleaves the phytosulfokine AtPSK4%2C a growth promoting peptide.; conf_class=2; symbol=SBTI1.1; computational_description=SBTI1.1%3B FUNCTIONS IN: serine-type endopeptidase activity%3B INVOLVED IN: proteolysis%2C negative regulation of catalytic activity%3B LOCATED IN: extracellular matrix%2C apoplast%2C cell wall%3B EXPRESSED IN: 19 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137)%2C Peptidase S8/S53%2C subtilisin/kexin/sedolisin (InterPro:IPR000209)%2C Peptidase S8%2C subtilisin-related (InterPro:IPR015500)%2C Peptidase S8/S53%2C subtilisin%2C active site (InterPro:IPR022398)%2C Proteinase inhibitor I9%2C subtilisin propeptide (InterPro:IPR010259)%3B BEST Arabidopsis thaliana protein match is: Subtilase family protein (TAIR:AT5G67360.1)%3B Has 6944 Blast hits to 6289 proteins in 1039 species: Archae - 198%3B Bacteria - 3931%3B Metazoa - 46%3B Fungi - 433%3B Plants - 1873%3B Viruses - 0%3B Other Eukaryotes - 463 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14697270, PMID:15342526, PMID:15694452, PMID:15763661, PMID:15593128, PMID:16193095, PMID:16330523, PMID:16648215, PMID:16895613, PMID:17581762, PMID:18055584, PMID:18643977, PMID:20736450, locus:2025457; locus_type=protein_coding
AT1G04077.1	chr1:000311828	0.0	C/311828-312884	AT1G04077.1 antisense_lncRNA AT1G04077 ID=AT1G04077.1; Parent=AT1G04077; Name=AT1G04077.1; description=Natural antisense transcript overlaps with AT1G01900; Note=Natural antisense transcript overlaps with AT1G01900; locus_type=antisense_long_noncoding_rna
AT1G01910.1	chr1:000313595	0.0	C/313595-313759,313880-313995,314087-314225,314441-314551,314652-314802,314891-315015,315577-315831	AT1G01910.1 CDS AT1G01910 ID=AT1G01910.1; Parent=AT1G01910; Name=AT1G01910.1; Note=P-loop containing nucleoside triphosphate hydrolases superfamily protein; conf_class=2; computational_description=P-loop containing nucleoside triphosphate hydrolases superfamily protein%3B FUNCTIONS IN: ATP binding%3B INVOLVED IN: cellular metal ion homeostasis%2C anion transport%3B LOCATED IN: membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: ATPase%2C anion-transporting (InterPro:IPR003348)%3B BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G10350.1)%3B Has 2854 Blast hits to 2413 proteins in 784 species: Archae - 172%3B Bacteria - 1905%3B Metazoa - 150%3B Fungi - 222%3B Plants - 105%3B Viruses - 0%3B Other Eukaryotes - 300 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18315867, PMID:18775970, PMID:20736450, PMID:20687615, locus:2025467; locus_type=protein_coding
AT1G01910.2	chr1:000313595	0.0	C/313595-313759,313880-313995,314087-314225,314441-314551,314652-314802,314891-315015,315577-315831	AT1G01910.2 CDS AT1G01910 ID=AT1G01910.2; Parent=AT1G01910; Name=AT1G01910.2; Note=P-loop containing nucleoside triphosphate hydrolases superfamily protein; conf_class=1; computational_description=P-loop containing nucleoside triphosphate hydrolases superfamily protein%3B FUNCTIONS IN: ATP binding%3B INVOLVED IN: cellular metal ion homeostasis%2C anion transport%3B LOCATED IN: membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: ATPase%2C anion-transporting (InterPro:IPR003348)%3B BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G10350.1)%3B Has 2854 Blast hits to 2413 proteins in 784 species: Archae - 172%3B Bacteria - 1905%3B Metazoa - 150%3B Fungi - 222%3B Plants - 105%3B Viruses - 0%3B Other Eukaryotes - 300 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:18315867, PMID:18775970, PMID:20736450, PMID:20687615, locus:2025467; locus_type=protein_coding
AT1G01910.4	chr1:000313595	0.0	C/313595-313759,313880-313995,314087-314225,314441-314551,314652-314802,314891-315015,315577-315831	AT1G01910.4 CDS AT1G01910 ID=AT1G01910.4; Parent=AT1G01910; Name=AT1G01910.4; Note=P-loop containing nucleoside triphosphate hydrolases superfamily protein; conf_class=2; computational_description=P-loop containing nucleoside triphosphate hydrolases superfamily protein%3B FUNCTIONS IN: ATP binding%3B INVOLVED IN: cellular metal ion homeostasis%2C anion transport%3B LOCATED IN: membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: ATPase%2C anion-transporting (InterPro:IPR003348)%3B BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G10350.1)%3B Has 2854 Blast hits to 2413 proteins in 784 species: Archae - 172%3B Bacteria - 1905%3B Metazoa - 150%3B Fungi - 222%3B Plants - 105%3B Viruses - 0%3B Other Eukaryotes - 300 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18315867, PMID:18775970, PMID:20736450, PMID:20687615, locus:2025467; locus_type=protein_coding
AT1G01910.5	chr1:000313595	0.0	C/313595-313759,313880-313995,314087-314225,314441-314551,314652-314802,315577-315644	AT1G01910.5 CDS AT1G01910 ID=AT1G01910.5; Parent=AT1G01910; Name=AT1G01910.5; Note=P-loop containing nucleoside triphosphate hydrolases superfamily protein; conf_class=2; computational_description=P-loop containing nucleoside triphosphate hydrolases superfamily protein%3B FUNCTIONS IN: ATP binding%3B INVOLVED IN: cellular metal ion homeostasis%2C anion transport%3B LOCATED IN: membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: ATPase%2C anion-transporting (InterPro:IPR003348)%3B BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G10350.1)%3B Has 2854 Blast hits to 2413 proteins in 784 species: Archae - 172%3B Bacteria - 1905%3B Metazoa - 150%3B Fungi - 222%3B Plants - 105%3B Viruses - 0%3B Other Eukaryotes - 300 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18315867, PMID:18775970, PMID:20736450, PMID:20687615, locus:2025467; locus_type=protein_coding
AT1G01910.3	chr1:000313746	0.0	C/313746-313752,313872-313995,314087-314225,314441-314551,314652-314802,314891-315015,315577-315831	AT1G01910.3 CDS AT1G01910 ID=AT1G01910.3; Parent=AT1G01910; Name=AT1G01910.3; Note=P-loop containing nucleoside triphosphate hydrolases superfamily protein; conf_class=2; computational_description=P-loop containing nucleoside triphosphate hydrolases superfamily protein%3B FUNCTIONS IN: ATP binding%3B INVOLVED IN: cellular metal ion homeostasis%2C anion transport%3B LOCATED IN: membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: ATPase%2C anion-transporting (InterPro:IPR003348)%3B BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G10350.1)%3B Has 2854 Blast hits to 2413 proteins in 784 species: Archae - 172%3B Bacteria - 1905%3B Metazoa - 150%3B Fungi - 222%3B Plants - 105%3B Viruses - 0%3B Other Eukaryotes - 300 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18315867, PMID:18775970, PMID:20736450, PMID:20687615, locus:2025467; locus_type=protein_coding
AT1G04083.1	chr1:000314189	0.0	W/314189-314463	AT1G04083.1 antisense_lncRNA AT1G04083 ID=AT1G04083.1; Parent=AT1G04083; Name=AT1G04083.1; description=Natural antisense transcript overlaps with AT1G01910; Note=Natural antisense transcript overlaps with AT1G01910; locus_type=antisense_long_noncoding_rna
AT1G01920.1	chr1:000316204	0.0	W/316204-316257,316344-316440,316539-316713,316792-316897,317008-317090,317167-317193,317294-317456,317561-317642,317765-317845,317979-318040,318145-318201,318296-318433,318565-318813,318986-319101,319204-319296,319372-319507	AT1G01920.1 CDS AT1G01920 ID=AT1G01920.1; Parent=AT1G01920; Name=AT1G01920.1; Note=SET domain-containing protein; conf_class=6; computational_description=SET domain-containing protein%3B BEST Arabidopsis thaliana protein match is: Rubisco methyltransferase family protein (TAIR:AT1G14030.1)%3B Has 611 Blast hits to 608 proteins in 165 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 143%3B Fungi - 239%3B Plants - 164%3B Viruses - 0%3B Other Eukaryotes - 65 (source: NCBI BLink).; conf_rating=**; Dbxref=locus:2025477; locus_type=protein_coding
AT1G01920.2	chr1:000316204	0.0	W/316204-316257,316344-316440,316539-316713,316792-316897,317008-317090,317167-317193,317294-317439,317553-317642,317765-317845,317979-318040,318145-318201,318362-318433,318565-318813,318986-319101,319204-319296,319372-319507	AT1G01920.2 CDS AT1G01920 ID=AT1G01920.2; Parent=AT1G01920; Name=AT1G01920.2; Note=SET domain-containing protein; conf_class=2; computational_description=SET domain-containing protein%3B BEST Arabidopsis thaliana protein match is: Rubisco methyltransferase family protein (TAIR:AT1G14030.1)%3B Has 611 Blast hits to 608 proteins in 165 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 143%3B Fungi - 239%3B Plants - 164%3B Viruses - 0%3B Other Eukaryotes - 65 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2025477; locus_type=protein_coding
AT1G01920.3	chr1:000316204	0.0	W/316204-316257,316344-316440,316539-316713,316792-316897,317008-317090,317167-317193,317294-317439,317553-317642,317765-317845,317979-318040,318145-318201,318362-318433,318565-318819	AT1G01920.3 CDS AT1G01920 ID=AT1G01920.3; Parent=AT1G01920; Name=AT1G01920.3; Note=SET domain-containing protein; computational_description=SET domain-containing protein%3B BEST Arabidopsis thaliana protein match is: Rubisco methyltransferase family protein (TAIR:AT1G14030.1)%3B Has 611 Blast hits to 608 proteins in 165 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 143%3B Fungi - 239%3B Plants - 164%3B Viruses - 0%3B Other Eukaryotes - 65 (source: NCBI BLink).; Dbxref=locus:2025477; locus_type=protein_coding
AT1G01920.5	chr1:000316204	0.0	W/316204-316257,316344-316440,316539-316713,316792-316897,317008-317090,317167-317193,317294-317439,317553-317642,317765-317845,317979-318040,318145-318201,318362-318433,318565-318813,318986-319101,319204-319342	AT1G01920.5 CDS AT1G01920 ID=AT1G01920.5; Parent=AT1G01920; Name=AT1G01920.5; Note=SET domain-containing protein; computational_description=SET domain-containing protein%3B BEST Arabidopsis thaliana protein match is: Rubisco methyltransferase family protein (TAIR:AT1G14030.1)%3B Has 611 Blast hits to 608 proteins in 165 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 143%3B Fungi - 239%3B Plants - 164%3B Viruses - 0%3B Other Eukaryotes - 65 (source: NCBI BLink).; Dbxref=locus:2025477; locus_type=protein_coding
AT1G01920.4	chr1:000316438	0.0	W/316438-316440,316523-316713,316792-316897,317008-317090,317167-317193,317294-317439,317553-317642,317765-317845,317979-318040,318145-318201,318362-318433,318565-318813,318986-319101,319204-319296,319372-319507	AT1G01920.4 CDS AT1G01920 ID=AT1G01920.4; Parent=AT1G01920; Name=AT1G01920.4; Note=SET domain-containing protein; computational_description=SET domain-containing protein%3B BEST Arabidopsis thaliana protein match is: Rubisco methyltransferase family protein (TAIR:AT1G14030.1)%3B Has 611 Blast hits to 608 proteins in 165 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 143%3B Fungi - 239%3B Plants - 164%3B Viruses - 0%3B Other Eukaryotes - 65 (source: NCBI BLink).; Dbxref=locus:2025477; locus_type=protein_coding
AT1G01930.1	chr1:000320041	0.0	C/320041-320145,320252-320296,320380-320457,320769-321422,321751-321865,321958-322406,322513-322809	AT1G01930.1 CDS AT1G01930 ID=AT1G01930.1; Parent=AT1G01930; Name=AT1G01930.1; Note=zinc finger protein-like protein; conf_class=2; computational_description=zinc finger protein-related%3B FUNCTIONS IN: zinc ion binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: intracellular%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C C2H2-like (InterPro:IPR015880)%2C Ankyrin repeat-containing domain (InterPro:IPR020683)%2C Ankyrin repeat (InterPro:IPR002110)%3B Has 1975 Blast hits to 1659 proteins in 367 species: Archae - 3%3B Bacteria - 303%3B Metazoa - 582%3B Fungi - 382%3B Plants - 105%3B Viruses - 11%3B Other Eukaryotes - 589 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, locus:2025487; locus_type=protein_coding
AT1G01940.1	chr1:000323082	0.0	W/323082-323084,323208-323282,323679-323840,324258-324416,324636-324719	AT1G01940.1 CDS AT1G01940 ID=AT1G01940.1; Parent=AT1G01940; Name=AT1G01940.1; Note=Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; conf_class=2; computational_description=Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein%3B FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity%3B INVOLVED IN: protein folding%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891)%2C Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type (InterPro:IPR002130)%2C Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type%2C conserved site (InterPro:IPR020892)%3B BEST Arabidopsis thaliana protein match is: plant U-box 49 (TAIR:AT5G67530.1)%3B Has 17692 Blast hits to 17552 proteins in 2716 species: Archae - 108%3B Bacteria - 7521%3B Metazoa - 2867%3B Fungi - 1402%3B Plants - 1253%3B Viruses - 0%3B Other Eukaryotes - 4541 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15051864, PMID:15047905, PMID:18055584, PMID:18650403, PMID:20736450, locus:2025492; locus_type=protein_coding
AT1G01950.1	chr1:000325473	0.0	W/325473-325641,325913-326013,326106-326228,326332-326517,326594-326815,326931-327084,327237-327386,327488-327576,327663-327866,328000-328107,328188-328322,328424-328555,328898-329030,329119-329211,329311-329436,329573-329698,329781-329924,330027-330155,330243-330403	AT1G01950.1 CDS AT1G01950 ID=AT1G01950.1; Parent=AT1G01950; Name=AT1G01950.1; Note=armadillo repeat kinesin 2; curator_summary=Encodes a member of the armadillo/beta-catenin repeat kinesin motor family. Mutants have twisted roots due to abnormal cell file rotation%3B the phenotype is dependent on microtubules.; conf_class=2; symbol=ARK2; Alias=AtKINUb, Arabidopsis thaliana KINESIN Ungrouped clade, gene B; full_name=armadillo repeat kinesin 2; computational_description=armadillo repeat kinesin 2 (ARK2)%3B FUNCTIONS IN: microtubule motor activity%2C binding%2C ATP binding%3B INVOLVED IN: root development%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Kinesin%2C motor region%2C conserved site (InterPro:IPR019821)%2C Armadillo-like helical (InterPro:IPR011989)%2C Armadillo (InterPro:IPR000225)%2C Armadillo-type fold (InterPro:IPR016024)%2C Kinesin%2C motor domain (InterPro:IPR001752)%3B BEST Arabidopsis thaliana protein match is: armadillo repeat kinesin 3 (TAIR:AT1G12430.1)%3B Has 19604 Blast hits to 16795 proteins in 739 species: Archae - 69%3B Bacteria - 853%3B Metazoa - 8320%3B Fungi - 2122%3B Plants - 2828%3B Viruses - 22%3B Other Eukaryotes - 5390 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12946625, PMID:14576160, PMID:17971038, PMID:17957256, PMID:20736450, PMID:21387573, locus:2025497; locus_type=protein_coding
AT1G01950.2	chr1:000325473	0.0	W/325473-325641,325913-326013,326106-326228,326332-326517,326594-326815,326931-327084,327237-327386,327488-327576,327663-327866,328000-328107,328188-328322,328424-328504,328898-329030,329119-329211,329311-329436,329573-329698,329781-329924,330027-330155,330243-330403	AT1G01950.2 CDS AT1G01950 ID=AT1G01950.2; Parent=AT1G01950; Name=AT1G01950.2; Note=armadillo repeat kinesin 2; curator_summary=Encodes a member of the armadillo/beta-catenin repeat kinesin motor family. Mutants have twisted roots due to abnormal cell file rotation%3B the phenotype is dependent on microtubules.; conf_class=2; symbol=ARK2; Alias=AtKINUb, Arabidopsis thaliana KINESIN Ungrouped clade, gene B; full_name=armadillo repeat kinesin 2; computational_description=armadillo repeat kinesin 2 (ARK2)%3B FUNCTIONS IN: microtubule motor activity%2C binding%2C ATP binding%3B INVOLVED IN: root development%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Kinesin%2C motor region%2C conserved site (InterPro:IPR019821)%2C Armadillo-like helical (InterPro:IPR011989)%2C Armadillo (InterPro:IPR000225)%2C Armadillo-type fold (InterPro:IPR016024)%2C Kinesin%2C motor domain (InterPro:IPR001752)%3B BEST Arabidopsis thaliana protein match is: armadillo repeat kinesin 3 (TAIR:AT1G12430.1)%3B Has 19604 Blast hits to 16795 proteins in 739 species: Archae - 69%3B Bacteria - 853%3B Metazoa - 8320%3B Fungi - 2122%3B Plants - 2828%3B Viruses - 22%3B Other Eukaryotes - 5390 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12946625, PMID:14576160, PMID:17971038, PMID:17957256, PMID:20736450, PMID:21387573, locus:2025497; locus_type=protein_coding
AT1G01950.3	chr1:000325473	0.0	W/325473-325641,325913-326013,326106-326228,326332-326517,326594-326815,326931-327084,327237-327386,327488-327576,327663-327866,328000-328107,328188-328322,328424-328555,328686-328734,328884-329030,329119-329211,329311-329436,329573-329698,329781-329924,330027-330155,330243-330403	AT1G01950.3 CDS AT1G01950 ID=AT1G01950.3; Parent=AT1G01950; Name=AT1G01950.3; Note=armadillo repeat kinesin 2; curator_summary=Encodes a member of the armadillo/beta-catenin repeat kinesin motor family. Mutants have twisted roots due to abnormal cell file rotation%3B the phenotype is dependent on microtubules.; conf_class=6; symbol=ARK2; Alias=AtKINUb, Arabidopsis thaliana KINESIN Ungrouped clade, gene B; full_name=armadillo repeat kinesin 2; computational_description=armadillo repeat kinesin 2 (ARK2)%3B FUNCTIONS IN: microtubule motor activity%2C binding%2C ATP binding%3B INVOLVED IN: root development%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Kinesin%2C motor region%2C conserved site (InterPro:IPR019821)%2C Armadillo-like helical (InterPro:IPR011989)%2C Armadillo (InterPro:IPR000225)%2C Armadillo-type fold (InterPro:IPR016024)%2C Kinesin%2C motor domain (InterPro:IPR001752)%3B BEST Arabidopsis thaliana protein match is: armadillo repeat kinesin 3 (TAIR:AT1G12430.1)%3B Has 19604 Blast hits to 16795 proteins in 739 species: Archae - 69%3B Bacteria - 853%3B Metazoa - 8320%3B Fungi - 2122%3B Plants - 2828%3B Viruses - 22%3B Other Eukaryotes - 5390 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:12946625, PMID:14576160, PMID:17971038, PMID:17957256, PMID:20736450, PMID:21387573, locus:2025497; locus_type=protein_coding
AT1G01950.4	chr1:000326362	0.0	W/326362-326517,326594-326815,326931-327084,327237-327386,327488-327576,327663-327866,328000-328107,328188-328322,328424-328555,328898-329030,329119-329211,329311-329436,329573-329698,329781-329924,330027-330155,330243-330403	AT1G01950.4 CDS AT1G01950 ID=AT1G01950.4; Parent=AT1G01950; Name=AT1G01950.4; Note=armadillo repeat kinesin 2; symbol=ARK2; Alias=AtKINUb, Arabidopsis thaliana KINESIN Ungrouped clade, gene B; full_name=armadillo repeat kinesin 2; curator_summary=Encodes a member of the armadillo/beta-catenin repeat kinesin motor family. Mutants have twisted roots due to abnormal cell file rotation%3B the phenotype is dependent on microtubules.; computational_description=armadillo repeat kinesin 2 (ARK2)%3B FUNCTIONS IN: microtubule motor activity%2C binding%2C ATP binding%3B INVOLVED IN: root development%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Kinesin%2C motor region%2C conserved site (InterPro:IPR019821)%2C Armadillo-like helical (InterPro:IPR011989)%2C Armadillo (InterPro:IPR000225)%2C Armadillo-type fold (InterPro:IPR016024)%2C Kinesin%2C motor domain (InterPro:IPR001752)%3B BEST Arabidopsis thaliana protein match is: armadillo repeat kinesin 3 (TAIR:AT1G12430.1)%3B Has 19604 Blast hits to 16795 proteins in 739 species: Archae - 69%3B Bacteria - 853%3B Metazoa - 8320%3B Fungi - 2122%3B Plants - 2828%3B Viruses - 22%3B Other Eukaryotes - 5390 (source: NCBI BLink).; Dbxref=PMID:12946625, PMID:14576160, PMID:17971038, PMID:17957256, PMID:20736450, PMID:21387573, locus:2025497; locus_type=protein_coding
AT1G01960.1	chr1:000330830	0.0	C/330830-331423,331534-332183,332276-332633,332724-333045,333129-333628,333905-334178,334471-334763,334899-335321,335419-335773,335916-336233,336417-337582	AT1G01960.1 CDS AT1G01960 ID=AT1G01960.1; Parent=AT1G01960; Name=AT1G01960.1; Note=SEC7-like guanine nucleotide exchange family protein; conf_class=2; symbol=EDA10; full_name=embryo sac development arrest 10; computational_description=embryo sac development arrest 10 (EDA10)%3B FUNCTIONS IN: binding%2C ARF guanyl-nucleotide exchange factor activity%2C guanyl-nucleotide exchange factor activity%3B INVOLVED IN: megagametogenesis%3B LOCATED IN: cytosol%2C nucleus%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: SEC7-like (InterPro:IPR000904)%2C Armadillo-type fold (InterPro:IPR016024)%2C Protein of unknown function DUF1981%2C SEC7 associated (InterPro:IPR015403)%3B BEST Arabidopsis thaliana protein match is: SEC7-like guanine nucleotide exchange family protein (TAIR:AT3G60860.1)%3B Has 2904 Blast hits to 2648 proteins in 246 species: Archae - 0%3B Bacteria - 34%3B Metazoa - 1480%3B Fungi - 646%3B Plants - 300%3B Viruses - 0%3B Other Eukaryotes - 444 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15634699, PMID:16944199, PMID:17488242, PMID:18203920, PMID:18433157, PMID:18831797, PMID:20736450, PMID:20687615, PMID:24714496, locus:2025502; locus_type=protein_coding
AT1G01970.1	chr1:000338538	0.0	W/338538-338987,339126-339905	AT1G01970.1 CDS AT1G01970 ID=AT1G01970.1; Parent=AT1G01970; Name=AT1G01970.1; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; conf_class=1; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G19520.1)%3B Has 15559 Blast hits to 6864 proteins in 176 species: Archae - 0%3B Bacteria - 16%3B Metazoa - 92%3B Fungi - 19%3B Plants - 15148%3B Viruses - 0%3B Other Eukaryotes - 284 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:18650403, locus:2025442; locus_type=protein_coding
AT1G01980.1	chr1:000340374	0.0	C/340374-341999	AT1G01980.1 CDS AT1G01980 ID=AT1G01980.1; Parent=AT1G01980; Name=AT1G01980.1; Note=FAD-binding Berberine family protein; curator_summary=member of Reticuline oxidase-like family; conf_class=1; computational_description=ATSEC1A%3B FUNCTIONS IN: electron carrier activity%2C oxidoreductase activity%2C FAD binding%2C catalytic activity%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 9 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%2C C globular stage%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: FAD-binding%2C type 2 (InterPro:IPR016166)%2C Berberine/berberine-like (InterPro:IPR012951)%2C FAD linked oxidase%2C N-terminal (InterPro:IPR006094)%3B BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT1G11770.1)%3B Has 4204 Blast hits to 4007 proteins in 589 species: Archae - 34%3B Bacteria - 1730%3B Metazoa - 0%3B Fungi - 1606%3B Plants - 712%3B Viruses - 0%3B Other Eukaryotes - 122 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11115874, PMID:18796151, PMID:18775970, PMID:20736450, locus:2025452; locus_type=protein_coding
AT1G01990.1	chr1:000343462	0.0	C/343462-344199	AT1G01990.1 CDS AT1G01990 ID=AT1G01990.1; Parent=AT1G01990; Name=AT1G01990.1; Note=hypothetical protein; conf_class=1; computational_description=unknown protein%3B Has 32 Blast hits to 32 proteins in 6 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 32%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:20736450, locus:2025462; locus_type=protein_coding
AT1G02000.1	chr1:000346052	0.0	W/346052-347356	AT1G02000.1 CDS AT1G02000 ID=AT1G02000.1; Parent=AT1G02000; Name=AT1G02000.1; Note=UDP-D-glucuronate 4-epimerase 2; curator_summary=UDP-D-glucuronate 4-epimerase; conf_class=1; symbol=GAE2; full_name=UDP-D-glucuronate 4-epimerase 2; computational_description=UDP-D-glucuronate 4-epimerase 2 (GAE2)%3B FUNCTIONS IN: UDP-glucuronate 4-epimerase activity%2C catalytic activity%3B INVOLVED IN: cellular metabolic process%2C carbohydrate metabolic process%2C nucleotide-sugar metabolic process%2C metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509)%2C NAD(P)-binding domain (InterPro:IPR016040)%2C Nucleotide sugar epimerase (InterPro:IPR008089)%3B BEST Arabidopsis thaliana protein match is: UDP-D-glucuronate 4-epimerase 3 (TAIR:AT4G00110.1)%3B Has 43438 Blast hits to 43429 proteins in 2985 species: Archae - 785%3B Bacteria - 25993%3B Metazoa - 728%3B Fungi - 385%3B Plants - 1220%3B Viruses - 41%3B Other Eukaryotes - 14286 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15247385, PMID:15911562, PMID:18775970, PMID:20736450, locus:2025472; locus_type=protein_coding
AT1G02010.1	chr1:000348046	0.0	W/348046-348127,348212-348267,348373-348454,348562-348640,348735-348785,348880-348976,349067-349099,349238-349366,349550-349720,349803-349886,350049-350147,350226-350296,350474-350570,350658-350783,350871-350966,351044-351160,351252-351329,351412-351632,351729-351819,351912-352001,352126-352197	AT1G02010.1 CDS AT1G02010 ID=AT1G02010.1; Parent=AT1G02010; Name=AT1G02010.1; Note=secretory 1A; curator_summary=member of KEULE Gene Family; conf_class=3; symbol=SEC1A; full_name=secretory 1A; computational_description=secretory 1A (SEC1A)%3B FUNCTIONS IN: protein transporter activity%3B INVOLVED IN: protein secretion%2C vesicle-mediated transport%2C vesicle docking involved in exocytosis%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Sec1-like protein (InterPro:IPR001619)%3B BEST Arabidopsis thaliana protein match is: Sec1/munc18-like (SM) proteins superfamily (TAIR:AT1G12360.1)%3B Has 1717 Blast hits to 1698 proteins in 226 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 705%3B Fungi - 477%3B Plants - 219%3B Viruses - 0%3B Other Eukaryotes - 316 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16944199, locus:2025482; locus_type=protein_coding
AT1G02010.2	chr1:000348046	0.0	W/348046-348127,348212-348267,348373-348454,348562-348640,348735-348785,348880-348976,349067-349099,349238-349366,349550-349720,349803-349886,350049-350147,350226-350296,350474-350570,350658-350783,350871-350966,351044-351160,351252-351329,351412-351601,351737-351819,351912-352001,352126-352197	AT1G02010.2 CDS AT1G02010 ID=AT1G02010.2; Parent=AT1G02010; Name=AT1G02010.2; Note=secretory 1A; curator_summary=member of KEULE Gene Family; conf_class=3; symbol=SEC1A; full_name=secretory 1A; computational_description=secretory 1A (SEC1A)%3B FUNCTIONS IN: protein transporter activity%3B INVOLVED IN: protein secretion%2C vesicle-mediated transport%2C vesicle docking involved in exocytosis%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Sec1-like protein (InterPro:IPR001619)%3B BEST Arabidopsis thaliana protein match is: Sec1/munc18-like (SM) proteins superfamily (TAIR:AT1G12360.1)%3B Has 1717 Blast hits to 1698 proteins in 226 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 705%3B Fungi - 477%3B Plants - 219%3B Viruses - 0%3B Other Eukaryotes - 316 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16944199, locus:2025482; locus_type=protein_coding
AT1G02010.3	chr1:000348046	0.0	W/348046-348127,348212-348267,348373-348454,348562-348640,348735-348785,348880-348976,349067-349099,349238-349366,349550-349720,349803-349886,350049-350147,350226-350296,350474-350570,350658-350783,350871-350966,351044-351160,351252-351329,351412-351699	AT1G02010.3 CDS AT1G02010 ID=AT1G02010.3; Parent=AT1G02010; Name=AT1G02010.3; Note=secretory 1A; symbol=SEC1A; full_name=secretory 1A; Dbxref=PMID:16944199, locus:2025482; curator_summary=member of KEULE Gene Family; computational_description=secretory 1A (SEC1A)%3B FUNCTIONS IN: protein transporter activity%3B INVOLVED IN: protein secretion%2C vesicle-mediated transport%2C vesicle docking involved in exocytosis%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Sec1-like protein (InterPro:IPR001619)%3B BEST Arabidopsis thaliana protein match is: Sec1/munc18-like (SM) proteins superfamily (TAIR:AT1G12360.1)%3B Has 1717 Blast hits to 1698 proteins in 226 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 705%3B Fungi - 477%3B Plants - 219%3B Viruses - 0%3B Other Eukaryotes - 316 (source: NCBI BLink).; locus_type=protein_coding
AT1G02010.4	chr1:000348046	0.0	W/348046-348127,348212-348267,348373-348454,348562-348640,348735-348785,348880-349099,349238-349366,349550-349720,349803-349886,350049-350147,350226-350296,350474-350570,350658-350783,350871-350966,351044-351160,351252-351329,351412-351632,351729-351819,351912-352001,352126-352197	AT1G02010.4 CDS AT1G02010 ID=AT1G02010.4; Parent=AT1G02010; Name=AT1G02010.4; Note=secretory 1A; symbol=SEC1A; full_name=secretory 1A; curator_summary=member of KEULE Gene Family; computational_description=secretory 1A (SEC1A)%3B FUNCTIONS IN: protein transporter activity%3B INVOLVED IN: protein secretion%2C vesicle-mediated transport%2C vesicle docking involved in exocytosis%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Sec1-like protein (InterPro:IPR001619)%3B BEST Arabidopsis thaliana protein match is: Sec1/munc18-like (SM) proteins superfamily (TAIR:AT1G12360.1)%3B Has 1717 Blast hits to 1698 proteins in 226 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 705%3B Fungi - 477%3B Plants - 219%3B Viruses - 0%3B Other Eukaryotes - 316 (source: NCBI BLink).; Dbxref=PMID:16944199, locus:2025482; locus_type=protein_coding
AT1G02010.5	chr1:000348226	0.0	W/348226-348267,348373-348454,348562-348640,348735-348785,348880-348976,349067-349099,349238-349366,349550-349720,349803-349886,350049-350147,350226-350296,350474-350570,350658-350783,350871-350966,351044-351160,351252-351329,351412-351632,351729-351819,351912-352001,352126-352197	AT1G02010.5 CDS AT1G02010 ID=AT1G02010.5; Parent=AT1G02010; Name=AT1G02010.5; Note=secretory 1A; symbol=SEC1A; full_name=secretory 1A; curator_summary=member of KEULE Gene Family; computational_description=secretory 1A (SEC1A)%3B FUNCTIONS IN: protein transporter activity%3B INVOLVED IN: protein secretion%2C vesicle-mediated transport%2C vesicle docking involved in exocytosis%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Sec1-like protein (InterPro:IPR001619)%3B BEST Arabidopsis thaliana protein match is: Sec1/munc18-like (SM) proteins superfamily (TAIR:AT1G12360.1)%3B Has 1717 Blast hits to 1698 proteins in 226 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 705%3B Fungi - 477%3B Plants - 219%3B Viruses - 0%3B Other Eukaryotes - 316 (source: NCBI BLink).; Dbxref=PMID:16944199, locus:2025482; locus_type=protein_coding
AT1G02010.6	chr1:000349067	0.0	W/349067-349099,349238-349366,349550-349720,349803-349886,350049-350147,350226-350296,350474-350570,350658-350783,350871-350966,351044-351160,351252-351329,351412-351632,351729-351819,351912-352001,352126-352197	AT1G02010.6 CDS AT1G02010 ID=AT1G02010.6; Parent=AT1G02010; Name=AT1G02010.6; Note=secretory 1A; symbol=SEC1A; full_name=secretory 1A; curator_summary=member of KEULE Gene Family; computational_description=secretory 1A (SEC1A)%3B FUNCTIONS IN: protein transporter activity%3B INVOLVED IN: protein secretion%2C vesicle-mediated transport%2C vesicle docking involved in exocytosis%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Sec1-like protein (InterPro:IPR001619)%3B BEST Arabidopsis thaliana protein match is: Sec1/munc18-like (SM) proteins superfamily (TAIR:AT1G12360.1)%3B Has 1717 Blast hits to 1698 proteins in 226 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 705%3B Fungi - 477%3B Plants - 219%3B Viruses - 0%3B Other Eukaryotes - 316 (source: NCBI BLink).; Dbxref=PMID:16944199, locus:2025482; locus_type=protein_coding
AT1TE01140	chr1:000349928	0.0	C/349928-349969	AT1TE01140 transposable_element AT1TE01140 ID=AT1TE01140; Name=AT1TE01140; Alias=ATGP2
AT1TE01145	chr1:000349972	0.0	C/349972-350037	AT1TE01145 transposable_element AT1TE01145 ID=AT1TE01145; Name=AT1TE01145; Alias=ATGP2
AT1G02020.1	chr1:000352842	0.0	C/352842-353162,353238-354845	AT1G02020.1 CDS AT1G02020 ID=AT1G02020.1; Parent=AT1G02020; Name=AT1G02020.1; Note=nitroreductase family protein; conf_class=1; computational_description=nitroreductase family protein%3B FUNCTIONS IN: oxidoreductase activity%2C acting on NADH or NADPH%2C nitrogenous group as acceptor%2C oxidoreductase activity%3B INVOLVED IN: metabolic process%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Nitroreductase-like (InterPro:IPR000415)%3B Has 762 Blast hits to 681 proteins in 314 species: Archae - 126%3B Bacteria - 594%3B Metazoa - 0%3B Fungi - 0%3B Plants - 23%3B Viruses - 0%3B Other Eukaryotes - 19 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14576160, PMID:20736450, locus:2205639; locus_type=protein_coding
AT1G02020.2	chr1:000353214	0.0	C/353214-354845	AT1G02020.2 CDS AT1G02020 ID=AT1G02020.2; Parent=AT1G02020; Name=AT1G02020.2; Note=nitroreductase family protein; conf_class=1; computational_description=nitroreductase family protein%3B FUNCTIONS IN: oxidoreductase activity%2C acting on NADH or NADPH%2C nitrogenous group as acceptor%2C oxidoreductase activity%3B INVOLVED IN: metabolic process%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Nitroreductase-like (InterPro:IPR000415)%3B Has 762 Blast hits to 681 proteins in 314 species: Archae - 126%3B Bacteria - 594%3B Metazoa - 0%3B Fungi - 0%3B Plants - 23%3B Viruses - 0%3B Other Eukaryotes - 19 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14576160, PMID:20736450, locus:2205639; locus_type=protein_coding
AT1G02020.3	chr1:000353390	0.0	C/353390-353512,353622-354845	AT1G02020.3 CDS AT1G02020 ID=AT1G02020.3; Parent=AT1G02020; Name=AT1G02020.3; Note=nitroreductase family protein; computational_description=nitroreductase family protein%3B FUNCTIONS IN: oxidoreductase activity%2C acting on NADH or NADPH%2C nitrogenous group as acceptor%2C oxidoreductase activity%3B INVOLVED IN: metabolic process%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Nitroreductase-like (InterPro:IPR000415)%3B Has 762 Blast hits to 681 proteins in 314 species: Archae - 126%3B Bacteria - 594%3B Metazoa - 0%3B Fungi - 0%3B Plants - 23%3B Viruses - 0%3B Other Eukaryotes - 19 (source: NCBI BLink).; Dbxref=PMID:14576160, PMID:20736450, locus:2205639; locus_type=protein_coding
AT1TE01155	chr1:000354368	0.0	C/354368-354750	AT1TE01155 transposable_element AT1TE01155 ID=AT1TE01155; Name=AT1TE01155; Alias=ATENSPM6
AT1G02030.1	chr1:000355385	0.0	C/355385-356188	AT1G02030.1 CDS AT1G02030 ID=AT1G02030.1; Parent=AT1G02030; Name=AT1G02030.1; Note=C2H2-like zinc finger protein; conf_class=8; computational_description=C2H2-like zinc finger protein%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%2C zinc ion binding%2C nucleic acid binding%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: intracellular%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C C2H2-like (InterPro:IPR015880)%2C Zinc finger%2C C2H2-type (InterPro:IPR007087)%3B BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT3G60580.1)%3B Has 3215 Blast hits to 2725 proteins in 143 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 2130%3B Fungi - 20%3B Plants - 967%3B Viruses - 0%3B Other Eukaryotes - 94 (source: NCBI BLink).; conf_rating=*; Dbxref=PMID:11118137, PMID:15236668, PMID:15894743, PMID:18193167, PMID:24119003, locus:2205649; locus_type=protein_coding
AT1G02040.1	chr1:000358104	0.0	C/358104-359078	AT1G02040.1 CDS AT1G02040 ID=AT1G02040.1; Parent=AT1G02040; Name=AT1G02040.1; Note=C2H2-type zinc finger family protein; conf_class=1; computational_description=C2H2-type zinc finger family protein%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%2C zinc ion binding%2C nucleic acid binding%3B LOCATED IN: intracellular%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C C2H2-like (InterPro:IPR015880)%2C Zinc finger%2C C2H2-type (InterPro:IPR007087)%3B BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT2G17180.1)%3B Has 5502 Blast hits to 3522 proteins in 286 species: Archae - 2%3B Bacteria - 120%3B Metazoa - 2284%3B Fungi - 460%3B Plants - 1034%3B Viruses - 242%3B Other Eukaryotes - 1360 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11118137, PMID:15236668, PMID:15375205, PMID:18193167, PMID:21104372, locus:2205583; locus_type=protein_coding
AT1G02050.1	chr1:000359164	0.0	C/359164-360149,360240-360441	AT1G02050.1 CDS AT1G02050 ID=AT1G02050.1; Parent=AT1G02050; Name=AT1G02050.1; Note=Chalcone and stilbene synthase family protein; conf_class=2; symbol=LAP6; Alias=PSKA, polyketide synthase A; full_name=LESS ADHESIVE POLLEN 6; computational_description=LESS ADHESIVE POLLEN 6 (LAP6)%3B FUNCTIONS IN: transferase activity%2C transferring acyl groups other than amino-acyl groups%2C catalytic activity%2C acyltransferase activity%3B INVOLVED IN: phenylpropanoid biosynthetic process%2C pollen exine formation%3B EXPRESSED IN: 11 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Chalcone/stilbene synthase%2C N-terminal (InterPro:IPR001099)%2C Thiolase-like (InterPro:IPR016039)%2C Polyketide synthase%2C type III (InterPro:IPR011141)%2C Thiolase-like%2C subgroup (InterPro:IPR016038)%2C Chalcone/stilbene synthase%2C C-terminal (InterPro:IPR012328)%3B BEST Arabidopsis thaliana protein match is: Chalcone and stilbene synthase family protein (TAIR:AT4G00040.1)%3B Has 6482 Blast hits to 6477 proteins in 1606 species: Archae - 0%3B Bacteria - 2500%3B Metazoa - 0%3B Fungi - 67%3B Plants - 3666%3B Viruses - 0%3B Other Eukaryotes - 249 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15860015, PMID:17496121, PMID:18433503, PMID:19043200, PMID:20442277, PMID:21193570, PMID:23632852, PMID:23252839, locus:2205588; locus_type=protein_coding
AT1G02060.1	chr1:000360918	0.0	C/360918-363050	AT1G02060.1 CDS AT1G02060 ID=AT1G02060.1; Parent=AT1G02060; Name=AT1G02060.1; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; conf_class=4; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 11 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G37230.1)%3B Has 43508 Blast hits to 14040 proteins in 293 species: Archae - 4%3B Bacteria - 48%3B Metazoa - 396%3B Fungi - 632%3B Plants - 41173%3B Viruses - 0%3B Other Eukaryotes - 1255 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:14576160, PMID:15565108, locus:2205609; locus_type=protein_coding
AT1G02065.1	chr1:000365625	0.0	W/365625-366325,366723-366859,366986-367149	AT1G02065.1 CDS AT1G02065 ID=AT1G02065.1; Parent=AT1G02065; Name=AT1G02065.1; Note=squamosa promoter binding protein-like 8; curator_summary=Encodes an SBP-box gene%2C a member of the SPL gene family. Mutants are affected in micro- and megasporogenesis%2C trichome formation on sepals%2C and stamen filament elongation.; conf_class=2; symbol=SPL8; full_name=squamosa promoter binding protein-like 8; computational_description=squamosa promoter binding protein-like 8 (SPL8)%3B CONTAINS InterPro DOMAIN/s: Transcription factor%2C SBP-box (InterPro:IPR004333)%3B BEST Arabidopsis thaliana protein match is: squamosa promoter binding protein-like 2 (TAIR:AT5G43270.1)%3B Has 903 Blast hits to 889 proteins in 57 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 44%3B Fungi - 4%3B Plants - 841%3B Viruses - 0%3B Other Eukaryotes - 12 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12671094, PMID:14535885, PMID:15799777, PMID:16095614, PMID:17093870, PMID:18036205, PMID:21177480, PMID:23621152, PMID:24508602, locus:504956101; locus_type=protein_coding
AT1G02065.2	chr1:000365625	0.0	W/365625-366365	AT1G02065.2 CDS AT1G02065 ID=AT1G02065.2; Parent=AT1G02065; Name=AT1G02065.2; Note=squamosa promoter binding protein-like 8; curator_summary=Encodes an SBP-box gene%2C a member of the SPL gene family. Mutants are affected in micro- and megasporogenesis%2C trichome formation on sepals%2C and stamen filament elongation.; conf_class=2; symbol=SPL8; full_name=squamosa promoter binding protein-like 8; computational_description=squamosa promoter binding protein-like 8 (SPL8)%3B CONTAINS InterPro DOMAIN/s: Transcription factor%2C SBP-box (InterPro:IPR004333)%3B BEST Arabidopsis thaliana protein match is: squamosa promoter binding protein-like 2 (TAIR:AT5G43270.1)%3B Has 903 Blast hits to 889 proteins in 57 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 44%3B Fungi - 4%3B Plants - 841%3B Viruses - 0%3B Other Eukaryotes - 12 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12671094, PMID:14535885, PMID:15799777, PMID:16095614, PMID:17093870, PMID:18036205, PMID:21177480, PMID:23621152, PMID:24508602, locus:504956101; locus_type=protein_coding
AT1G02067.1	chr1:000366945	0.0	C/366945-367166	AT1G02067.1 CDS AT1G02067 ID=AT1G02067.1; Parent=AT1G02067; Name=AT1G02067.1; Note=hypothetical protein; locus_type=protein_coding
AT1G02070.1	chr1:000370445	0.0	C/370445-370751,370859-370947	AT1G02070.1 CDS AT1G02070 ID=AT1G02070.1; Parent=AT1G02070; Name=AT1G02070.1; Note=zinc ion-binding protein; conf_class=2; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60520.1)%3B Has 98 Blast hits to 98 proteins in 13 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 98%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, locus:2205578; locus_type=protein_coding
AT1G02080.1	chr1:000373335	0.0	W/373335-373405,373606-373786,373892-374189,374272-374500,374583-374922,375122-375238,375325-375453,375528-375719,375808-376002,376114-376251,376352-376474,376562-376815,376925-377028,377211-377305,377391-377615,377881-378036,378119-378191,378298-378365,378504-378649,378746-378854,378943-379089,379183-379230,379305-379433,379528-379770,379866-380003,380089-380174,380270-380375,380602-380697,380846-380998,381150-381332,381405-381634,381730-381832,381912-382040,382127-382171,382373-382567,382803-382929,383030-383130,383395-383529,383608-383688,384084-384230,384318-384449,384558-384605,384694-384840,384908-384969,385171-385324,385432-385623,385713-385817,385909-386043,386133-386333,386428-386682	AT1G02080.1 CDS AT1G02080 ID=AT1G02080.1; Parent=AT1G02080; Name=AT1G02080.1; Note=transcription regulator; conf_class=4; computational_description=transcription regulators%3B FUNCTIONS IN: transcription regulator activity%3B LOCATED IN: membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: CCR4-Not complex component%2C Not1 (InterPro:IPR007196)%3B Has 1434 Blast hits to 680 proteins in 246 species: Archae - 0%3B Bacteria - 196%3B Metazoa - 419%3B Fungi - 362%3B Plants - 144%3B Viruses - 0%3B Other Eukaryotes - 313 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:16359384, PMID:16944199, PMID:18650403, PMID:18775970, locus:2205614; locus_type=protein_coding
AT1G02080.2	chr1:000373694	0.0	W/373694-373786,373892-374189,374272-374500,374583-374922,375125-375238,375325-375453,375528-375719,375808-376002,376114-376251,376352-376474,376562-376815,376925-377028,377211-377305,377391-377615,377881-378036,378119-378191,378298-378365,378504-378649,378746-378854,378943-379089,379183-379230,379305-379433,379528-379770,379866-380003,380089-380174,380270-380375,380602-380697,380846-380998,381150-381332,381405-381634,381730-381832,381912-382040,382127-382171,382373-382567,382803-382929,383030-383130,383395-383529,383608-383688,384084-384230,384318-384449,384558-384605,384694-384840,384908-384969,385171-385324,385432-385623,385713-385817,385909-386043,386133-386333,386428-386682	AT1G02080.2 CDS AT1G02080 ID=AT1G02080.2; Parent=AT1G02080; Name=AT1G02080.2; Note=transcription regulator; conf_class=2; computational_description=transcription regulators%3B FUNCTIONS IN: transcription regulator activity%3B LOCATED IN: membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: CCR4-Not complex component%2C Not1 (InterPro:IPR007196)%3B Has 1434 Blast hits to 680 proteins in 246 species: Archae - 0%3B Bacteria - 196%3B Metazoa - 419%3B Fungi - 362%3B Plants - 144%3B Viruses - 0%3B Other Eukaryotes - 313 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16359384, PMID:16944199, PMID:18650403, PMID:18775970, locus:2205614; locus_type=protein_coding
AT1G02080.3	chr1:000373694	0.0	W/373694-373786,373892-374189,374272-374500,374583-374922,375125-375238,375325-375453,375528-375719,375808-376002,376114-376251,376352-376474,376562-376815,376925-377028,377211-377305,377391-377615,377881-378036,378119-378191,378298-378365,378504-378649,378746-378854,378943-379089,379183-379230,379305-379433,379528-379770,379866-380003,380086-380174,380270-380375,380602-380697,380846-380998,381150-381332,381405-381634,381730-381832,381912-382040,382127-382171,382373-382567,382803-382929,383030-383130,383395-383529,383608-383688,384084-384230,384318-384449,384558-384605,384694-384840,384908-384969,385171-385324,385432-385623,385713-385817,385909-386043,386133-386333,386428-386682	AT1G02080.3 CDS AT1G02080 ID=AT1G02080.3; Parent=AT1G02080; Name=AT1G02080.3; Note=transcription regulator; computational_description=transcription regulators%3B FUNCTIONS IN: transcription regulator activity%3B LOCATED IN: membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: CCR4-Not complex component%2C Not1 (InterPro:IPR007196)%3B Has 1434 Blast hits to 680 proteins in 246 species: Archae - 0%3B Bacteria - 196%3B Metazoa - 419%3B Fungi - 362%3B Plants - 144%3B Viruses - 0%3B Other Eukaryotes - 313 (source: NCBI BLink).; Dbxref=PMID:16359384, PMID:16944199, PMID:18650403, PMID:18775970, locus:2205614; locus_type=protein_coding
AT1G02090.1	chr1:000387479	0.0	C/387479-387503,387584-387672,388268-388406,388539-388609,388716-388760,388851-388940,389050-389138,389226-389301,389410-389568	AT1G02090.1 CDS AT1G02090 ID=AT1G02090.1; Parent=AT1G02090; Name=AT1G02090.1; Note=Proteasome component (PCI) domain protein; curator_summary=encodes a phosphoprotein that is a subunit of the COP9 signalosome. Mutants exhibit constitutive photomorphogenic phenotype.; conf_class=2; symbol=FUS5; Alias=ATCSN7, ARABIDOPSIS THALIANA COP9 SIGNALOSOME SUBUNIT 7, COP15, CONSTITUTIVE PHOTOMORPHOGENIC 15, CSN7, COP9 SIGNALOSOME SUBUNIT 7; full_name=FUSCA 5; computational_description=FUSCA 5 (FUS5)%3B CONTAINS InterPro DOMAIN/s: Proteasome component (PCI) domain (InterPro:IPR000717)%3B Has 689 Blast hits to 689 proteins in 163 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 405%3B Fungi - 166%3B Plants - 80%3B Viruses - 0%3B Other Eukaryotes - 38 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10521526, PMID:10330469, PMID:9707402, PMID:11019806, PMID:11742986, PMID:11029466, PMID:12615944, PMID:17077498, PMID:17307927, PMID:18650403, PMID:18854373, PMID:21614643, PMID:23086934, locus:2205593; locus_type=protein_coding
AT1G02090.2	chr1:000387647	0.0	C/387647-387655,388268-388406,388539-388609,388716-388760,388851-388940,389050-389138,389226-389301,389410-389568	AT1G02090.2 CDS AT1G02090 ID=AT1G02090.2; Parent=AT1G02090; Name=AT1G02090.2; Note=Proteasome component (PCI) domain protein; curator_summary=encodes a phosphoprotein that is a subunit of the COP9 signalosome. Mutants exhibit constitutive photomorphogenic phenotype.; conf_class=2; symbol=FUS5; Alias=ATCSN7, ARABIDOPSIS THALIANA COP9 SIGNALOSOME SUBUNIT 7, COP15, CONSTITUTIVE PHOTOMORPHOGENIC 15, CSN7, COP9 SIGNALOSOME SUBUNIT 7; full_name=FUSCA 5; computational_description=FUSCA 5 (FUS5)%3B CONTAINS InterPro DOMAIN/s: Proteasome component (PCI) domain (InterPro:IPR000717)%3B Has 689 Blast hits to 689 proteins in 163 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 405%3B Fungi - 166%3B Plants - 80%3B Viruses - 0%3B Other Eukaryotes - 38 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10521526, PMID:10330469, PMID:9707402, PMID:11019806, PMID:11742986, PMID:11029466, PMID:12615944, PMID:17077498, PMID:17307927, PMID:18650403, PMID:18854373, PMID:21614643, PMID:23086934, locus:2205593; locus_type=protein_coding
AT1G02090.3	chr1:000388223	0.0	C/388223-388406,388539-388609,388716-388760,388851-388940,389050-389138,389226-389301,389410-389568	AT1G02090.3 CDS AT1G02090 ID=AT1G02090.3; Parent=AT1G02090; Name=AT1G02090.3; Note=Proteasome component (PCI) domain protein; curator_summary=encodes a phosphoprotein that is a subunit of the COP9 signalosome. Mutants exhibit constitutive photomorphogenic phenotype.; conf_class=2; symbol=FUS5; Alias=ATCSN7, ARABIDOPSIS THALIANA COP9 SIGNALOSOME SUBUNIT 7, COP15, CONSTITUTIVE PHOTOMORPHOGENIC 15, CSN7, COP9 SIGNALOSOME SUBUNIT 7; full_name=FUSCA 5; computational_description=FUSCA 5 (FUS5)%3B CONTAINS InterPro DOMAIN/s: Proteasome component (PCI) domain (InterPro:IPR000717)%3B Has 689 Blast hits to 689 proteins in 163 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 405%3B Fungi - 166%3B Plants - 80%3B Viruses - 0%3B Other Eukaryotes - 38 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10521526, PMID:10330469, PMID:9707402, PMID:11019806, PMID:11742986, PMID:11029466, PMID:12615944, PMID:17077498, PMID:17307927, PMID:18650403, PMID:18854373, PMID:21614643, PMID:23086934, locus:2205593; locus_type=protein_coding
AT1G02100.1	chr1:000389876	0.0	W/389876-389943,390037-390250,390352-390399,390483-390564,390762-390864,391003-391123,391216-391263,391458-391541,391652-391716,392021-392072,392262-392300,392374-392448	AT1G02100.1 CDS AT1G02100 ID=AT1G02100.1; Parent=AT1G02100; Name=AT1G02100.1; Note=Leucine carboxyl methyltransferase; conf_class=2; symbol=SBI1; Alias=LCMT1, leucine carboxyl methyl transferase 1; full_name=SUPPRESSOR OF BRI1; computational_description=Leucine carboxyl methyltransferase%3B FUNCTIONS IN: methyltransferase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Leucine carboxyl methyltransferase%2C LCTM1 1 (InterPro:IPR016651)%2C Leucine carboxyl methyltransferase%2C eukaryotic (InterPro:IPR021121)%2C Leucine carboxyl methyltransferase (InterPro:IPR007213)%3B Has 605 Blast hits to 597 proteins in 204 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 192%3B Fungi - 282%3B Plants - 33%3B Viruses - 0%3B Other Eukaryotes - 98 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:20736450, PMID:21558554, PMID:24810976, locus:2205619; locus_type=protein_coding
AT1G02100.2	chr1:000389876	0.0	W/389876-389943,390037-390250,390352-390399,390483-390564,390762-390864,391003-391123,391216-391263,391458-391541,391652-391716,392021-392076,392262-392293	AT1G02100.2 CDS AT1G02100 ID=AT1G02100.2; Parent=AT1G02100; Name=AT1G02100.2; Note=Leucine carboxyl methyltransferase; conf_class=2; symbol=SBI1; Alias=LCMT1, leucine carboxyl methyl transferase 1; full_name=SUPPRESSOR OF BRI1; computational_description=Leucine carboxyl methyltransferase%3B FUNCTIONS IN: methyltransferase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Leucine carboxyl methyltransferase%2C LCTM1 1 (InterPro:IPR016651)%2C Leucine carboxyl methyltransferase%2C eukaryotic (InterPro:IPR021121)%2C Leucine carboxyl methyltransferase (InterPro:IPR007213)%3B Has 605 Blast hits to 597 proteins in 204 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 192%3B Fungi - 282%3B Plants - 33%3B Viruses - 0%3B Other Eukaryotes - 98 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:20736450, PMID:21558554, PMID:24810976, locus:2205619; locus_type=protein_coding
AT1G02100.3	chr1:000389876	0.0	W/389876-389943,390037-390250,390352-390399,390483-390564,390762-390864,391003-391123,391216-391263,391458-391541,391652-391716,392021-392072,392262-392300,392374-392448	AT1G02100.3 CDS AT1G02100 ID=AT1G02100.3; Parent=AT1G02100; Name=AT1G02100.3; Note=Leucine carboxyl methyltransferase; conf_class=1; symbol=SBI1; Alias=LCMT1, leucine carboxyl methyl transferase 1; full_name=SUPPRESSOR OF BRI1; computational_description=Leucine carboxyl methyltransferase%3B FUNCTIONS IN: methyltransferase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Leucine carboxyl methyltransferase%2C LCTM1 1 (InterPro:IPR016651)%2C Leucine carboxyl methyltransferase%2C eukaryotic (InterPro:IPR021121)%2C Leucine carboxyl methyltransferase (InterPro:IPR007213)%3B Has 605 Blast hits to 597 proteins in 204 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 192%3B Fungi - 282%3B Plants - 33%3B Viruses - 0%3B Other Eukaryotes - 98 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:20736450, PMID:21558554, PMID:24810976, locus:2205619; locus_type=protein_coding
AT1G02110.1	chr1:000392939	0.0	W/392939-393875,393966-394153,394228-394451,394672-395434	AT1G02110.1 CDS AT1G02110 ID=AT1G02110.1; Parent=AT1G02110; Name=AT1G02110.1; Note=bZIP domain class transcription factor (DUF630 and DUF632); conf_class=1; computational_description=Protein of unknown function (DUF630 and DUF632)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: N-terminal protein myristoylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF630 (InterPro:IPR006868)%2C Protein of unknown function DUF632 (InterPro:IPR006867)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF630 and DUF632) (TAIR:AT3G60320.1)%3B Has 861 Blast hits to 735 proteins in 117 species: Archae - 0%3B Bacteria - 21%3B Metazoa - 78%3B Fungi - 83%3B Plants - 611%3B Viruses - 12%3B Other Eukaryotes - 56 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12912986, PMID:20736450, locus:2205598; locus_type=protein_coding
AT1G02120.1	chr1:000395761	0.0	W/395761-395946,396029-396088,396167-396217,396291-396356,396439-396534,396609-396725,396793-396863,396941-397098,397703-397743,397877-397964,398065-398151,398292-398346,398460-398526,398614-398713,398905-398966,399068-399110,399182-399393,399484-399720	AT1G02120.1 CDS AT1G02120 ID=AT1G02120.1; Parent=AT1G02120; Name=AT1G02120.1; Note=GRAM domain family protein; curator_summary=Encodes VAD1 (Vascular Associated Death1)%2C a regulator of cell death and defense responses in vascular tissues. VAD1 is a putative membrane associated protein and contains a GRAM domain. vad1 is a lesion mimic mutant that exhibits light conditional appearance of propagative HR (hypersensitive response)-like lesions along the vascular system.; conf_class=2; symbol=VAD1; full_name=VASCULAR ASSOCIATED DEATH1; computational_description=VASCULAR ASSOCIATED DEATH1 (VAD1)%3B INVOLVED IN: defense response to bacterium%2C negative regulation of programmed cell death%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: GRAM (InterPro:IPR004182)%3B BEST Arabidopsis thaliana protein match is: C2 domain-containing protein / GRAM domain-containing protein (TAIR:AT3G59660.1)%3B Has 1155 Blast hits to 1034 proteins in 185 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 619%3B Fungi - 222%3B Plants - 157%3B Viruses - 0%3B Other Eukaryotes - 157 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15269331, PMID:18201690, PMID:18650403, PMID:18775970, PMID:19271961, locus:2205625; locus_type=protein_coding
AT1G02120.2	chr1:000395761	0.0	W/395761-395946,396029-396088,396167-396217,396291-396356,396439-396534,396609-396725,396793-396863,396941-397098,397703-397743,397877-397964,398065-398151,398292-398346,398460-398526,398614-398713,398905-399083	AT1G02120.2 CDS AT1G02120 ID=AT1G02120.2; Parent=AT1G02120; Name=AT1G02120.2; Note=GRAM domain family protein; symbol=VAD1; full_name=VASCULAR ASSOCIATED DEATH1; curator_summary=Encodes VAD1 (Vascular Associated Death1)%2C a regulator of cell death and defense responses in vascular tissues. VAD1 is a putative membrane associated protein and contains a GRAM domain. vad1 is a lesion mimic mutant that exhibits light conditional appearance of propagative HR (hypersensitive response)-like lesions along the vascular system.; computational_description=VASCULAR ASSOCIATED DEATH1 (VAD1)%3B INVOLVED IN: defense response to bacterium%2C negative regulation of programmed cell death%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: GRAM (InterPro:IPR004182)%3B BEST Arabidopsis thaliana protein match is: C2 domain-containing protein / GRAM domain-containing protein (TAIR:AT3G59660.1)%3B Has 1155 Blast hits to 1034 proteins in 185 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 619%3B Fungi - 222%3B Plants - 157%3B Viruses - 0%3B Other Eukaryotes - 157 (source: NCBI BLink).; Dbxref=PMID:15269331, PMID:18201690, PMID:18650403, PMID:18775970, PMID:19271961, locus:2205625; locus_type=protein_coding
AT1G02120.3	chr1:000395761	0.0	W/395761-395946,396029-396088,396167-396217,396291-396356,396439-396534,396609-396725,396793-396863,396941-397098,397703-397743,397877-397964,398065-398151,398292-398346,398460-398526,398614-398713,399011-399027	AT1G02120.3 CDS AT1G02120 ID=AT1G02120.3; Parent=AT1G02120; Name=AT1G02120.3; Note=GRAM domain family protein; symbol=VAD1; full_name=VASCULAR ASSOCIATED DEATH1; curator_summary=Encodes VAD1 (Vascular Associated Death1)%2C a regulator of cell death and defense responses in vascular tissues. VAD1 is a putative membrane associated protein and contains a GRAM domain. vad1 is a lesion mimic mutant that exhibits light conditional appearance of propagative HR (hypersensitive response)-like lesions along the vascular system.; computational_description=VASCULAR ASSOCIATED DEATH1 (VAD1)%3B INVOLVED IN: defense response to bacterium%2C negative regulation of programmed cell death%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: GRAM (InterPro:IPR004182)%3B BEST Arabidopsis thaliana protein match is: C2 domain-containing protein / GRAM domain-containing protein (TAIR:AT3G59660.1)%3B Has 1155 Blast hits to 1034 proteins in 185 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 619%3B Fungi - 222%3B Plants - 157%3B Viruses - 0%3B Other Eukaryotes - 157 (source: NCBI BLink).; Dbxref=PMID:15269331, PMID:18201690, PMID:18650403, PMID:18775970, PMID:19271961, locus:2205625; locus_type=protein_coding
AT1G02130.1	chr1:000400350	0.0	C/400350-400446,400725-400828,400931-401086,401164-401235,401323-401370,401461-401508,401595-401667,401775-401788	AT1G02130.1 CDS AT1G02130 ID=AT1G02130.1; Parent=AT1G02130; Name=AT1G02130.1; Note=RAS 5; curator_summary=Belongs to the Rab1 GTPase subfamily. This small GTP-binding protein is required in ER to Golgi transportation.; conf_class=2; symbol=RA-5; Alias=ARA-5, RAS 5, ARA5, ARABIDOPSIS RAS 5, ATRAB1B, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ATRABD2A, ARABIDOPSIS THALIANA RAB D2A, RABD2A, RAB D2A; full_name=RAS 5; computational_description=RAS 5 (RA-5)%3B FUNCTIONS IN: GTP binding%3B INVOLVED IN: response to cadmium ion%2C ER to Golgi vesicle-mediated transport%3B LOCATED IN: plasma membrane%2C vacuole%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806)%2C Small GTP-binding protein (InterPro:IPR005225)%2C Small GTPase (InterPro:IPR020851)%2C Ras (InterPro:IPR013753)%2C Ras small GTPase%2C Rab type (InterPro:IPR003579)%3B BEST Arabidopsis thaliana protein match is: RAB GTPase homolog 1A (TAIR:AT5G47200.1)%3B Has 30420 Blast hits to 30350 proteins in 816 species: Archae - 27%3B Bacteria - 199%3B Metazoa - 15882%3B Fungi - 4318%3B Plants - 3658%3B Viruses - 20%3B Other Eukaryotes - 6316 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10188584, PMID:1748311, PMID:11090219, PMID:11874578, PMID:12644670, PMID:12684538, PMID:14500793, PMID:15060130, PMID:15539469, PMID:15972698, PMID:16146321, PMID:16502469, PMID:16531497, PMID:16615871, PMID:17346352, PMID:18055610, PMID:18650403, PMID:21269510, locus:2205603; locus_type=protein_coding
AT1G04087.1	chr1:000402086	0.0	W/402086-402294	AT1G04087.1 lnc_RNA AT1G04087 ID=AT1G04087.1; Parent=AT1G04087; Name=AT1G04087.1; locus_type=long_noncoding_rna
AT1G02136.1	chr1:000402693	0.0	C/402693-402961	AT1G02136.1 pseudogenic_transcript AT1G02136 ID=AT1G02136.1; Parent=AT1G02136; Name=AT1G02136.1; index=1; Note=pseudogene; curator_summary=pseudogene of phagocytosis and cell motility protein; Dbxref=locus:4515102491, locus:4515102491; locus_type=pseudogene; computational_description=pseudogene of ELMO/CED-12 family protein
AT1G02140.1	chr1:000403467	0.0	C/403467-403526,403771-403947,404186-404401	AT1G02140.1 CDS AT1G02140 ID=AT1G02140.1; Parent=AT1G02140; Name=AT1G02140.1; Note=mago nashi family protein; curator_summary=Encodes a homologue of the exon junction complex (EJC) component MAGO that participates in intron-mediated enhancement of gene expression.; conf_class=2; symbol=MAGO; Alias=HAP1, HAPLESS 1, MEE63, MATERNAL EFFECT EMBRYO ARREST 63; full_name=MAGO NASHI; computational_description=MAGO NASHI (MAGO)%3B FUNCTIONS IN: protein binding%3B INVOLVED IN: pollen tube guidance%2C sex determination%2C embryo development ending in seed dormancy%3B LOCATED IN: in 6 components%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Mago nashi protein (InterPro:IPR004023)%3B Has 476 Blast hits to 476 proteins in 200 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 223%3B Fungi - 96%3B Plants - 76%3B Viruses - 0%3B Other Eukaryotes - 81 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15514068, PMID:15496452, PMID:15634699, PMID:15965014, PMID:16297076, PMID:16953428, PMID:18775970, PMID:19435936, PMID:17339635, PMID:21676911, locus:2205630; locus_type=protein_coding
AT1G02145.1	chr1:000404627	0.0	W/404627-404669,404757-404842,404912-404953,405065-405110,405242-405316,405430-405485,405648-405765,405893-405951,406061-406132,406247-406310,406415-406518,406721-406792,406903-406989,407080-407147,407321-407389,407468-407550,407722-407821,408073-408138,408236-408329,408408-408485	AT1G02145.1 CDS AT1G02145 ID=AT1G02145.1; Parent=AT1G02145; Name=AT1G02145.1; Note=homolog of asparagine-linked glycosylation 12; conf_class=3; symbol=ALG12; Alias=EBS4, EMS-MUTAGENIZED BRI1(BRASSINOSTEROID INSENSITIVE 1) SUPPRESSOR 4; full_name=homolog of asparagine-linked glycosylation 12; computational_description=homolog of asparagine-linked glycosylation 12 (ALG12)%3B FUNCTIONS IN: alpha-1%2C6-mannosyltransferase activity%3B INVOLVED IN: ER-associated protein catabolic process%2C protein amino acid terminal N-glycosylation%3B LOCATED IN: endomembrane system%2C intrinsic to endoplasmic reticulum membrane%3B CONTAINS InterPro DOMAIN/s: Alg9-like mannosyltransferase (InterPro:IPR005599)%3B BEST Arabidopsis thaliana protein match is: Alg9-like mannosyltransferase family (TAIR:AT5G14850.1)%3B Has 794 Blast hits to 784 proteins in 185 species: Archae - 0%3B Bacteria - 23%3B Metazoa - 309%3B Fungi - 268%3B Plants - 100%3B Viruses - 0%3B Other Eukaryotes - 94 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:20023196, PMID:22733738, locus:4010713407; locus_type=protein_coding
AT1G02145.3	chr1:000404627	0.0	W/404627-404669,404757-404842,404912-404953,405065-405110,405230-405316,405430-405485,405648-405765,405893-405951,406061-406132,406247-406310,406415-406518,406721-406792,406903-406989,407080-407147,407321-407389,407468-407550,407722-407821,408073-408138,408236-408329,408408-408485	AT1G02145.3 CDS AT1G02145 ID=AT1G02145.3; Parent=AT1G02145; Name=AT1G02145.3; Note=homolog of asparagine-linked glycosylation 12; conf_class=2; symbol=ALG12; Alias=EBS4, EMS-MUTAGENIZED BRI1(BRASSINOSTEROID INSENSITIVE 1) SUPPRESSOR 4; full_name=homolog of asparagine-linked glycosylation 12; computational_description=homolog of asparagine-linked glycosylation 12 (ALG12)%3B FUNCTIONS IN: alpha-1%2C6-mannosyltransferase activity%3B INVOLVED IN: ER-associated protein catabolic process%2C protein amino acid terminal N-glycosylation%3B LOCATED IN: endomembrane system%2C intrinsic to endoplasmic reticulum membrane%3B CONTAINS InterPro DOMAIN/s: Alg9-like mannosyltransferase (InterPro:IPR005599)%3B BEST Arabidopsis thaliana protein match is: Alg9-like mannosyltransferase family (TAIR:AT5G14850.1)%3B Has 794 Blast hits to 784 proteins in 185 species: Archae - 0%3B Bacteria - 23%3B Metazoa - 309%3B Fungi - 268%3B Plants - 100%3B Viruses - 0%3B Other Eukaryotes - 94 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:20023196, PMID:22733738, locus:4010713407; locus_type=protein_coding
AT1G02145.2	chr1:000404915	0.0	W/404915-404953,405065-405110,405230-405316,405430-405485,405648-405765,405893-405951,406061-406132,406247-406310,406415-406518,407535-407550,407722-407821,408073-408138,408236-408329,408408-408485	AT1G02145.2 CDS AT1G02145 ID=AT1G02145.2; Parent=AT1G02145; Name=AT1G02145.2; Note=homolog of asparagine-linked glycosylation 12; conf_class=6; symbol=ALG12; Alias=EBS4, EMS-MUTAGENIZED BRI1(BRASSINOSTEROID INSENSITIVE 1) SUPPRESSOR 4; full_name=homolog of asparagine-linked glycosylation 12; computational_description=homolog of asparagine-linked glycosylation 12 (ALG12)%3B FUNCTIONS IN: alpha-1%2C6-mannosyltransferase activity%3B INVOLVED IN: ER-associated protein catabolic process%2C protein amino acid terminal N-glycosylation%3B LOCATED IN: endomembrane system%2C intrinsic to endoplasmic reticulum membrane%3B CONTAINS InterPro DOMAIN/s: Alg9-like mannosyltransferase (InterPro:IPR005599)%3B BEST Arabidopsis thaliana protein match is: Alg9-like mannosyltransferase family (TAIR:AT5G14850.1)%3B Has 794 Blast hits to 784 proteins in 185 species: Archae - 0%3B Bacteria - 23%3B Metazoa - 309%3B Fungi - 268%3B Plants - 100%3B Viruses - 0%3B Other Eukaryotes - 94 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:20023196, PMID:22733738, locus:4010713407; locus_type=protein_coding
AT1G02145.4	chr1:000404915	0.0	W/404915-404953,405065-405110,405230-405316,405430-405485,405648-405765,405893-405951,406061-406132,406247-406310,406415-406518,406721-406792,406903-406989,407080-407147,407321-407389,407468-407550,407722-407821,408073-408138,408236-408329,408408-408485	AT1G02145.4 CDS AT1G02145 ID=AT1G02145.4; Parent=AT1G02145; Name=AT1G02145.4; Note=homolog of asparagine-linked glycosylation 12; conf_class=1; symbol=ALG12; Alias=EBS4, EMS-MUTAGENIZED BRI1(BRASSINOSTEROID INSENSITIVE 1) SUPPRESSOR 4; full_name=homolog of asparagine-linked glycosylation 12; computational_description=homolog of asparagine-linked glycosylation 12 (ALG12)%3B FUNCTIONS IN: alpha-1%2C6-mannosyltransferase activity%3B INVOLVED IN: ER-associated protein catabolic process%2C protein amino acid terminal N-glycosylation%3B LOCATED IN: endomembrane system%2C intrinsic to endoplasmic reticulum membrane%3B CONTAINS InterPro DOMAIN/s: Alg9-like mannosyltransferase (InterPro:IPR005599)%3B BEST Arabidopsis thaliana protein match is: Alg9-like mannosyltransferase family (TAIR:AT5G14850.1)%3B Has 794 Blast hits to 784 proteins in 185 species: Archae - 0%3B Bacteria - 23%3B Metazoa - 309%3B Fungi - 268%3B Plants - 100%3B Viruses - 0%3B Other Eukaryotes - 94 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:20023196, PMID:22733738, locus:4010713407; locus_type=protein_coding
AT1G02150.1	chr1:000408779	0.0	W/408779-409138,409219-410433	AT1G02150.1 CDS AT1G02150 ID=AT1G02150.1; Parent=AT1G02150; Name=AT1G02150.1; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; conf_class=2; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B FUNCTIONS IN: binding%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%2C Tetratricopeptide-like helical (InterPro:IPR011990)%3B BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G02820.1)%3B Has 10811 Blast hits to 5678 proteins in 200 species: Archae - 0%3B Bacteria - 11%3B Metazoa - 28%3B Fungi - 100%3B Plants - 10424%3B Viruses - 0%3B Other Eukaryotes - 248 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12372144, PMID:14576160, PMID:15805492, PMID:18515828, PMID:18650403, locus:2204793; locus_type=protein_coding
AT1G02160.1	chr1:000410803	0.0	W/410803-410893,411177-411253,411336-411383	AT1G02160.1 CDS AT1G02160 ID=AT1G02160.1; Parent=AT1G02160; Name=AT1G02160.1; Note=Cox19 family protein (CHCH motif); conf_class=1; computational_description=Cox19 family protein (CHCH motif)%3B CONTAINS InterPro DOMAIN/s: CHCH (InterPro:IPR010625)%3B Has 56 Blast hits to 56 proteins in 33 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 3%3B Fungi - 34%3B Plants - 19%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:18805951, PMID:18775970, locus:2204883; locus_type=protein_coding
AT1G02160.2	chr1:000410803	0.0	W/410803-410893,411177-411361	AT1G02160.2 CDS AT1G02160 ID=AT1G02160.2; Parent=AT1G02160; Name=AT1G02160.2; Note=Cox19 family protein (CHCH motif); conf_class=3; computational_description=Cox19 family protein (CHCH motif)%3B CONTAINS InterPro DOMAIN/s: CHCH (InterPro:IPR010625)%3B Has 56 Blast hits to 56 proteins in 33 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 3%3B Fungi - 34%3B Plants - 19%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18805951, PMID:18775970, locus:2204883; locus_type=protein_coding
AT1G02170.1	chr1:000411883	0.0	W/411883-412258,412460-412790,412883-413003,413080-413295,413367-413426	AT1G02170.1 CDS AT1G02170 ID=AT1G02170.1; Parent=AT1G02170; Name=AT1G02170.1; Note=metacaspase 1; curator_summary=Encodes a type I metacaspase. Two Arabidopsis metacaspases%2C AT1G02170 (MC1) and AT4G25110 (MC2) antagonistically control programmed cell death in Arabidopsis. MC1 is a positive regulator of cell death and requires conserved caspase-like putative catalytic residues for its function. MC2 negatively regulates cell death. This function is independent of the putative catalytic residues. A third type I Arabidopsis metacaspase is MC3 (AT5g64240).; conf_class=2; symbol=MC1; Alias=ATMC1, ARABIDOPSIS THALIANA METACASPASE 1, ATMCPB1, ARABIDOPSIS THALIANA METACASPASE 1B, AtMCP1b, metacaspase 1b, LOL3, LSD ONE LIKE 3, MCP1b, metacaspase 1b; full_name=metacaspase 1; computational_description=metacaspase 1 (AMC1)%3B FUNCTIONS IN: cysteine-type endopeptidase activity%3B INVOLVED IN: proteolysis%2C induction of apoptosis%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C LSD1-type (InterPro:IPR005735)%2C Peptidase C14%2C caspase catalytic (InterPro:IPR011600)%3B BEST Arabidopsis thaliana protein match is: metacaspase 2 (TAIR:AT4G25110.1)%3B Has 1179 Blast hits to 1148 proteins in 266 species: Archae - 3%3B Bacteria - 262%3B Metazoa - 3%3B Fungi - 268%3B Plants - 419%3B Viruses - 0%3B Other Eukaryotes - 224 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12732715, PMID:14576160, PMID:15326173, PMID:15691845, PMID:18775970, PMID:21097903, PMID:20565583, PMID:23633962, locus:2204798; locus_type=protein_coding
AT1G02180.1	chr1:000413619	0.0	C/413619-414217,414424-414505	AT1G02180.1 CDS AT1G02180 ID=AT1G02180.1; Parent=AT1G02180; Name=AT1G02180.1; Note=ferredoxin-like protein; conf_class=1; computational_description=ferredoxin-related%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B Has 54 Blast hits to 54 proteins in 11 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 54%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16367961, PMID:18775970, locus:2204803; locus_type=protein_coding
AT1G02190.1	chr1:000415154	0.0	W/415154-415670,415742-415961,416045-416435,416731-416838,416962-417162,417248-417520,417623-417796	AT1G02190.1 CDS AT1G02190 ID=AT1G02190.1; Parent=AT1G02190; Name=AT1G02190.1; Note=Fatty acid hydroxylase superfamily; conf_class=2; computational_description=Fatty acid hydroxylase superfamily%3B FUNCTIONS IN: oxidoreductase activity%2C iron ion binding%2C catalytic activity%3B INVOLVED IN: oxidation reduction%2C fatty acid biosynthetic process%3B LOCATED IN: endoplasmic reticulum%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694)%2C Uncharacterised protein%2C Wax2 C-terminal (InterPro:IPR021940)%3B BEST Arabidopsis thaliana protein match is: Fatty acid hydroxylase superfamily (TAIR:AT2G37700.1)%3B Has 2538 Blast hits to 2531 proteins in 532 species: Archae - 0%3B Bacteria - 866%3B Metazoa - 257%3B Fungi - 377%3B Plants - 504%3B Viruses - 3%3B Other Eukaryotes - 531 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15634696, PMID:15849306, PMID:16805732, PMID:19291320, PMID:20736450, PMID:23505340, locus:2204813; locus_type=protein_coding
AT1G02190.2	chr1:000415154	0.0	W/415154-415670,415742-415961,416045-416435,416743-416838,416962-417162,417248-417520,417623-417796	AT1G02190.2 CDS AT1G02190 ID=AT1G02190.2; Parent=AT1G02190; Name=AT1G02190.2; Note=Fatty acid hydroxylase superfamily; conf_class=2; computational_description=Fatty acid hydroxylase superfamily%3B FUNCTIONS IN: oxidoreductase activity%2C iron ion binding%2C catalytic activity%3B INVOLVED IN: oxidation reduction%2C fatty acid biosynthetic process%3B LOCATED IN: endoplasmic reticulum%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694)%2C Uncharacterised protein%2C Wax2 C-terminal (InterPro:IPR021940)%3B BEST Arabidopsis thaliana protein match is: Fatty acid hydroxylase superfamily (TAIR:AT2G37700.1)%3B Has 2538 Blast hits to 2531 proteins in 532 species: Archae - 0%3B Bacteria - 866%3B Metazoa - 257%3B Fungi - 377%3B Plants - 504%3B Viruses - 3%3B Other Eukaryotes - 531 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15634696, PMID:15849306, PMID:16805732, PMID:19291320, PMID:20736450, PMID:23505340, locus:2204813; locus_type=protein_coding
AT1G02205.2	chr1:000418818	0.0	W/418818-418877,418987-419210,419297-419529,419675-419894,420514-420889,420984-421091,421191-421391,421526-421633,421735-421908,421981-422154	AT1G02205.2 CDS AT1G02205 ID=AT1G02205.2; Parent=AT1G02205; Name=AT1G02205.2; Note=Fatty acid hydroxylase superfamily; curator_summary=Expression of the CER1 gene associated with production of stem epicuticular wax and pollen fertility. Biochemical studies showed that cer1 mutants are blocked in the conversion of stem wax C30 aldehydes to C29 alkanes%2C and they also lack the secondary alcohols and ketones. These suggested the CER1 protein is an aldehyde decarbonylase%2C but the exact molecular function of this protein remains to be determined.; conf_class=2; symbol=CER1; Alias=CER22, ECERIFERUM 22; full_name=ECERIFERUM 1; computational_description=ECERIFERUM 1 (CER1)%3B FUNCTIONS IN: aldehyde decarbonylase activity%3B INVOLVED IN: aldehyde catabolic process%2C wax biosynthetic process%2C cuticle development%3B LOCATED IN: endomembrane system%2C endoplasmic reticulum%3B EXPRESSED IN: 18 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694)%2C Uncharacterised protein%2C Wax2 C-terminal (InterPro:IPR021940)%3B BEST Arabidopsis thaliana protein match is: Fatty acid hydroxylase superfamily (TAIR:AT1G02190.1)%3B Has 341 Blast hits to 339 proteins in 49 species: Archae - 0%3B Bacteria - 44%3B Metazoa - 0%3B Fungi - 0%3B Plants - 284%3B Viruses - 0%3B Other Eukaryotes - 13 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9112770, PMID:8718622, PMID:8528281, PMID:1847001, PMID:12228482, PMID:12724542, PMID:12974811, PMID:15070782, PMID:17376164, PMID:17661078, PMID:18650403, PMID:19322663, PMID:19819982, PMID:19892830, PMID:20736450, PMID:21386033, PMID:22773744, PMID:23505340, PMID:23741473, PMID:24361507, PMID:24319075, PMID:24223831, PMID:25539982, locus:2827068; locus_type=protein_coding
AT1G02205.3	chr1:000418818	0.0	W/418818-418877,418987-419210,419297-419529,419675-419894,420514-420889,420984-421091,421191-421391,421526-421633,421720-421908,421981-422154	AT1G02205.3 CDS AT1G02205 ID=AT1G02205.3; Parent=AT1G02205; Name=AT1G02205.3; Note=Fatty acid hydroxylase superfamily; curator_summary=Expression of the CER1 gene associated with production of stem epicuticular wax and pollen fertility. Biochemical studies showed that cer1 mutants are blocked in the conversion of stem wax C30 aldehydes to C29 alkanes%2C and they also lack the secondary alcohols and ketones. These suggested the CER1 protein is an aldehyde decarbonylase%2C but the exact molecular function of this protein remains to be determined.; conf_class=2; symbol=CER1; Alias=CER22, ECERIFERUM 22; full_name=ECERIFERUM 1; computational_description=ECERIFERUM 1 (CER1)%3B FUNCTIONS IN: aldehyde decarbonylase activity%3B INVOLVED IN: aldehyde catabolic process%2C wax biosynthetic process%2C cuticle development%3B LOCATED IN: endomembrane system%2C endoplasmic reticulum%3B EXPRESSED IN: 18 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694)%2C Uncharacterised protein%2C Wax2 C-terminal (InterPro:IPR021940)%3B BEST Arabidopsis thaliana protein match is: Fatty acid hydroxylase superfamily (TAIR:AT1G02190.1)%3B Has 341 Blast hits to 339 proteins in 49 species: Archae - 0%3B Bacteria - 44%3B Metazoa - 0%3B Fungi - 0%3B Plants - 284%3B Viruses - 0%3B Other Eukaryotes - 13 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9112770, PMID:8718622, PMID:8528281, PMID:1847001, PMID:12228482, PMID:12724542, PMID:12974811, PMID:15070782, PMID:17376164, PMID:17661078, PMID:18650403, PMID:19322663, PMID:19819982, PMID:19892830, PMID:20736450, PMID:21386033, PMID:22773744, PMID:23505340, PMID:23741473, PMID:24361507, PMID:24319075, PMID:24223831, PMID:25539982, locus:2827068; locus_type=protein_coding
AT1G02205.4	chr1:000418924	0.0	W/418924-419210,419297-419529,419675-419894,420514-420889,420984-421091,421191-421391,421526-421633,421735-421908,421981-422154	AT1G02205.4 CDS AT1G02205 ID=AT1G02205.4; Parent=AT1G02205; Name=AT1G02205.4; Note=Fatty acid hydroxylase superfamily; symbol=CER1; Alias=CER22, ECERIFERUM 22; full_name=ECERIFERUM 1; curator_summary=Expression of the CER1 gene associated with production of stem epicuticular wax and pollen fertility. Biochemical studies showed that cer1 mutants are blocked in the conversion of stem wax C30 aldehydes to C29 alkanes%2C and they also lack the secondary alcohols and ketones. These suggested the CER1 protein is an aldehyde decarbonylase%2C but the exact molecular function of this protein remains to be determined.; computational_description=ECERIFERUM 1 (CER1)%3B FUNCTIONS IN: aldehyde decarbonylase activity%3B INVOLVED IN: aldehyde catabolic process%2C wax biosynthetic process%2C cuticle development%3B LOCATED IN: endomembrane system%2C endoplasmic reticulum%3B EXPRESSED IN: 18 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694)%2C Uncharacterised protein%2C Wax2 C-terminal (InterPro:IPR021940)%3B BEST Arabidopsis thaliana protein match is: Fatty acid hydroxylase superfamily (TAIR:AT1G02190.1)%3B Has 341 Blast hits to 339 proteins in 49 species: Archae - 0%3B Bacteria - 44%3B Metazoa - 0%3B Fungi - 0%3B Plants - 284%3B Viruses - 0%3B Other Eukaryotes - 13 (source: NCBI BLink).; Dbxref=PMID:9112770, PMID:8718622, PMID:8528281, PMID:1847001, PMID:12228482, PMID:12724542, PMID:12974811, PMID:15070782, PMID:17376164, PMID:17661078, PMID:18650403, PMID:19322663, PMID:19819982, PMID:19892830, PMID:20736450, PMID:21386033, PMID:22773744, PMID:23505340, PMID:23741473, PMID:24361507, PMID:24319075, PMID:24223831, PMID:25539982, locus:2827068; locus_type=protein_coding
AT1G02205.1	chr1:000419650	0.0	W/419650-419894,420514-420889,420984-421091,421191-421391,421526-421633,421735-421908,421981-422154	AT1G02205.1 CDS AT1G02205 ID=AT1G02205.1; Parent=AT1G02205; Name=AT1G02205.1; Note=Fatty acid hydroxylase superfamily; curator_summary=Expression of the CER1 gene associated with production of stem epicuticular wax and pollen fertility. Biochemical studies showed that cer1 mutants are blocked in the conversion of stem wax C30 aldehydes to C29 alkanes%2C and they also lack the secondary alcohols and ketones. These suggested the CER1 protein is an aldehyde decarbonylase%2C but the exact molecular function of this protein remains to be determined.; conf_class=2; symbol=CER1; Alias=CER22, ECERIFERUM 22; full_name=ECERIFERUM 1; computational_description=ECERIFERUM 1 (CER1)%3B FUNCTIONS IN: aldehyde decarbonylase activity%3B INVOLVED IN: aldehyde catabolic process%2C wax biosynthetic process%2C cuticle development%3B LOCATED IN: endomembrane system%2C endoplasmic reticulum%3B EXPRESSED IN: 18 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694)%2C Uncharacterised protein%2C Wax2 C-terminal (InterPro:IPR021940)%3B BEST Arabidopsis thaliana protein match is: Fatty acid hydroxylase superfamily (TAIR:AT1G02190.1)%3B Has 341 Blast hits to 339 proteins in 49 species: Archae - 0%3B Bacteria - 44%3B Metazoa - 0%3B Fungi - 0%3B Plants - 284%3B Viruses - 0%3B Other Eukaryotes - 13 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9112770, PMID:8718622, PMID:8528281, PMID:1847001, PMID:12228482, PMID:12724542, PMID:12974811, PMID:15070782, PMID:17376164, PMID:17661078, PMID:18650403, PMID:19322663, PMID:19819982, PMID:19892830, PMID:20736450, PMID:21386033, PMID:22773744, PMID:23505340, PMID:23741473, PMID:24361507, PMID:24319075, PMID:24223831, PMID:25539982, locus:2827068; locus_type=protein_coding
AT1G02205.5	chr1:000420494	0.0	W/420494-420889,420984-421091,421191-421391,421526-421633,421735-421908,421981-422154	AT1G02205.5 CDS AT1G02205 ID=AT1G02205.5; Parent=AT1G02205; Name=AT1G02205.5; Note=Fatty acid hydroxylase superfamily; symbol=CER1; Alias=CER22, ECERIFERUM 22; full_name=ECERIFERUM 1; curator_summary=Expression of the CER1 gene associated with production of stem epicuticular wax and pollen fertility. Biochemical studies showed that cer1 mutants are blocked in the conversion of stem wax C30 aldehydes to C29 alkanes%2C and they also lack the secondary alcohols and ketones. These suggested the CER1 protein is an aldehyde decarbonylase%2C but the exact molecular function of this protein remains to be determined.; computational_description=ECERIFERUM 1 (CER1)%3B FUNCTIONS IN: aldehyde decarbonylase activity%3B INVOLVED IN: aldehyde catabolic process%2C wax biosynthetic process%2C cuticle development%3B LOCATED IN: endomembrane system%2C endoplasmic reticulum%3B EXPRESSED IN: 18 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694)%2C Uncharacterised protein%2C Wax2 C-terminal (InterPro:IPR021940)%3B BEST Arabidopsis thaliana protein match is: Fatty acid hydroxylase superfamily (TAIR:AT1G02190.1)%3B Has 341 Blast hits to 339 proteins in 49 species: Archae - 0%3B Bacteria - 44%3B Metazoa - 0%3B Fungi - 0%3B Plants - 284%3B Viruses - 0%3B Other Eukaryotes - 13 (source: NCBI BLink).; Dbxref=PMID:9112770, PMID:8718622, PMID:8528281, PMID:1847001, PMID:12228482, PMID:12724542, PMID:12974811, PMID:15070782, PMID:17376164, PMID:17661078, PMID:18650403, PMID:19322663, PMID:19819982, PMID:19892830, PMID:20736450, PMID:21386033, PMID:22773744, PMID:23505340, PMID:23741473, PMID:24361507, PMID:24319075, PMID:24223831, PMID:25539982, locus:2827068; locus_type=protein_coding
AT1TE01370	chr1:000422674	0.0	W/422674-424055	AT1TE01370 transposable_element AT1TE01370 ID=AT1TE01370; Name=AT1TE01370; Alias=ARNOLDY1
AT1G08785.1	chr1:000424479	0.0	C/424479-425189	AT1G08785.1 transcript_region AT1G08785 ID=AT1G08785.1; Parent=AT1G08785; computational_description=novel transcribed region; Name=AT1G08785.1; locus_type=novel_transcribed_region
AT1G04093.1	chr1:000424666	0.0	W/424666-425164	AT1G04093.1 lnc_RNA AT1G04093 ID=AT1G04093.1; Parent=AT1G04093; Name=AT1G04093.1; locus_type=long_noncoding_rna
AT1G02210.1	chr1:000427548	0.0	C/427548-427811	AT1G02210.1 CDS AT1G02210 ID=AT1G02210.1; Parent=AT1G02210; Name=AT1G02210.1; Note=NAC (No Apical Meristem) domain transcriptional regulator superfamily protein; conf_class=1; computational_description=NAC (No Apical Meristem) domain transcriptional regulator superfamily protein%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441)%3B BEST Arabidopsis thaliana protein match is: NAC domain containing protein 4 (TAIR:AT1G02230.1)%3B Has 519 Blast hits to 519 proteins in 44 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 519%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16820983, locus:2204788; locus_type=protein_coding
AT1G02220.1	chr1:000428902	0.0	C/428902-429099,429248-429370,429462-429776,429851-429997,430069-430316,430414-430567	AT1G02220.1 CDS AT1G02220 ID=AT1G02220.1; Parent=AT1G02220; Name=AT1G02220.1; Note=NAC domain containing protein 3; conf_class=1; symbol=NAC003; Alias=ANAC003, NAC domain containing protein 3; full_name=NAC domain containing protein 3; computational_description=NAC domain containing protein 3 (NAC003)%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: multicellular organismal development%2C regulation of transcription%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: LP.06 six leaves visible%2C LP.04 four leaves visible%2C 4 anthesis%2C 4 leaf senescence stage%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441)%3B BEST Arabidopsis thaliana protein match is: NAC domain containing protein 48 (TAIR:AT3G04420.1)%3B Has 2600 Blast hits to 2593 proteins in 71 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 2%3B Plants - 2598%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11118137, PMID:15029955, PMID:15282545, PMID:15235117, PMID:16829591, PMID:17217462, PMID:17329565, PMID:18650403, PMID:20736450, PMID:22037706, PMID:24377444, locus:2204833; locus_type=protein_coding
AT1TE01390	chr1:000431310	0.0	W/431310-431469	AT1TE01390 transposable_element AT1TE01390 ID=AT1TE01390; Name=AT1TE01390; Alias=TAG2
AT1TE01395	chr1:000431474	0.0	C/431474-431916	AT1TE01395 transposable_element AT1TE01395 ID=AT1TE01395; Name=AT1TE01395; Alias=SIMPLEGUY1
AT1TE01400	chr1:000431917	0.0	W/431917-432073	AT1TE01400 transposable_element AT1TE01400 ID=AT1TE01400; Name=AT1TE01400; Alias=TAG2
AT1TE01405	chr1:000432995	0.0	C/432995-433837	AT1TE01405 transposable_element AT1TE01405 ID=AT1TE01405; Name=AT1TE01405; Alias=ATLINE1A
AT1G02228.1	chr1:000433031	0.0	C/433031-433819	AT1G02228.1 CDS AT1G02228 ID=AT1G02228.1; Parent=AT1G02228; Name=AT1G02228.1; index=1; curator_summary=pseudogene of no apical meristem (NAM) family protein; Dbxref=locus:4010713408; Note=transposable_element_gene; locus_type=transposable_element_gene
AT1G02230.1	chr1:000435174	0.0	C/435174-435323,435450-435563,435650-435916,435997-436128,436277-436539,436622-436775	AT1G02230.1 CDS AT1G02230 ID=AT1G02230.1; Parent=AT1G02230; Name=AT1G02230.1; Note=NAC domain containing protein 4; conf_class=4; symbol=NAC004; Alias=ANAC004, NAC domain containing protein 4; full_name=NAC domain containing protein 4; computational_description=NAC domain containing protein 4 (NAC004)%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: multicellular organismal development%2C regulation of transcription%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441)%3B BEST Arabidopsis thaliana protein match is: NAC domain containing protein 5 (TAIR:AT1G02250.1)%3B Has 2785 Blast hits to 2773 proteins in 73 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 8%3B Plants - 2773%3B Viruses - 0%3B Other Eukaryotes - 4 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:11118137, PMID:15029955, PMID:15375205, PMID:20736450, PMID:24377444, locus:2204783; locus_type=protein_coding
AT1G02250.1	chr1:000437951	0.0	C/437951-438106,438218-438334,438422-438679,438783-438923,439052-439314,439406-439559	AT1G02250.1 CDS AT1G02250 ID=AT1G02250.1; Parent=AT1G02250; Name=AT1G02250.1; Note=NAC domain containing protein 5; conf_class=4; symbol=NAC005; Alias=anac005, NAC domain containing protein 5; full_name=NAC domain containing protein 5; computational_description=NAC domain containing protein 5 (NAC005)%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: multicellular organismal development%2C regulation of transcription%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: xylem%3B CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441)%3B BEST Arabidopsis thaliana protein match is: NAC domain containing protein 4 (TAIR:AT1G02230.1)%3B Has 2682 Blast hits to 2674 proteins in 69 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 2682%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:11118137, PMID:15029955, PMID:15282545, PMID:15923329, PMID:17565617, PMID:20736450, PMID:23252839, locus:2204853; locus_type=protein_coding
AT1G02260.1	chr1:000440757	0.0	C/440757-441013,441136-441325,441398-442459	AT1G02260.1 CDS AT1G02260 ID=AT1G02260.1; Parent=AT1G02260; Name=AT1G02260.1; Note=Divalent ion symporter; conf_class=2; computational_description=Divalent ion symporter%3B FUNCTIONS IN: citrate transmembrane transporter activity%2C transporter activity%3B INVOLVED IN: citrate transport%2C transmembrane transport%3B LOCATED IN: endomembrane system%2C integral to membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Divalent ion symporter (InterPro:IPR004680)%3B Has 9789 Blast hits to 6672 proteins in 1812 species: Archae - 302%3B Bacteria - 8135%3B Metazoa - 259%3B Fungi - 87%3B Plants - 203%3B Viruses - 2%3B Other Eukaryotes - 801 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:18544156, PMID:20226671, locus:2204858; locus_type=protein_coding
AT1G02260.2	chr1:000440757	0.0	C/440757-441013,441136-441325,441398-442459	AT1G02260.2 CDS AT1G02260 ID=AT1G02260.2; Parent=AT1G02260; Name=AT1G02260.2; Note=Divalent ion symporter; Dbxref=PMID:14576160, PMID:18544156, PMID:20226671, locus:2204858; computational_description=Divalent ion symporter%3B FUNCTIONS IN: citrate transmembrane transporter activity%2C transporter activity%3B INVOLVED IN: citrate transport%2C transmembrane transport%3B LOCATED IN: endomembrane system%2C integral to membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Divalent ion symporter (InterPro:IPR004680)%3B Has 9789 Blast hits to 6672 proteins in 1812 species: Archae - 302%3B Bacteria - 8135%3B Metazoa - 259%3B Fungi - 87%3B Plants - 203%3B Viruses - 2%3B Other Eukaryotes - 801 (source: NCBI BLink).; locus_type=protein_coding
AT1G02270.1	chr1:000443301	0.0	C/443301-443525,443629-443736,443979-444089,444258-444383,444489-444597,444683-444759,444846-445066,445454-445559,445648-445752,445844-445942,446030-446197	AT1G02270.1 CDS AT1G02270 ID=AT1G02270.1; Parent=AT1G02270; Name=AT1G02270.1; Note=Calcium-binding endonuclease/exonuclease/phosphatase family; conf_class=2; computational_description=Calcium-binding endonuclease/exonuclease/phosphatase family%3B FUNCTIONS IN: catalytic activity%2C calcium ion binding%3B INVOLVED IN: response to cold%3B LOCATED IN: nucleus%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249)%2C EF-hand-like domain (InterPro:IPR011992)%2C Endonuclease/exonuclease/phosphatase (InterPro:IPR005135)%3B BEST Arabidopsis thaliana protein match is: Calcium-binding endonuclease/exonuclease/phosphatase family (TAIR:AT5G54130.2)%3B Has 514 Blast hits to 514 proteins in 124 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 161%3B Fungi - 59%3B Plants - 214%3B Viruses - 0%3B Other Eukaryotes - 80 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12372144, PMID:14617066, locus:2204863; locus_type=protein_coding
AT1G02270.2	chr1:000443301	0.0	C/443301-443525,443629-443736,443979-444089,444258-444383,444489-444597,444683-444759,444846-445066,445454-445526	AT1G02270.2 CDS AT1G02270 ID=AT1G02270.2; Parent=AT1G02270; Name=AT1G02270.2; Note=Calcium-binding endonuclease/exonuclease/phosphatase family; computational_description=Calcium-binding endonuclease/exonuclease/phosphatase family%3B FUNCTIONS IN: catalytic activity%2C calcium ion binding%3B INVOLVED IN: response to cold%3B LOCATED IN: nucleus%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249)%2C EF-hand-like domain (InterPro:IPR011992)%2C Endonuclease/exonuclease/phosphatase (InterPro:IPR005135)%3B BEST Arabidopsis thaliana protein match is: Calcium-binding endonuclease/exonuclease/phosphatase family (TAIR:AT5G54130.2)%3B Has 514 Blast hits to 514 proteins in 124 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 161%3B Fungi - 59%3B Plants - 214%3B Viruses - 0%3B Other Eukaryotes - 80 (source: NCBI BLink).; Dbxref=PMID:12372144, PMID:14617066, locus:2204863; locus_type=protein_coding
AT1G08795.1	chr1:000447092	0.0	W/447092-448179	AT1G08795.1 transcript_region AT1G08795 ID=AT1G08795.1; Parent=AT1G08795; computational_description=novel transcribed region; Name=AT1G08795.1; locus_type=novel_transcribed_region
AT1G08795.2	chr1:000447092	0.0	W/447092-448257	AT1G08795.2 transcript_region AT1G08795 ID=AT1G08795.2; Parent=AT1G08795; computational_description=novel transcribed region; Name=AT1G08795.2; locus_type=novel_transcribed_region
AT1G02280.1	chr1:000448665	0.0	C/448665-448733,448812-448973,449055-449123,449225-449489,449714-449838,449939-450046,450151-450246	AT1G02280.1 CDS AT1G02280 ID=AT1G02280.1; Parent=AT1G02280; Name=AT1G02280.1; Note=translocon at the outer envelope membrane of chloroplasts 33; curator_summary=Encodes a GTP-binding GTP-ase. Component of the chloroplast protein import machinery. Required for import of POR B into plastids. Toc33 phosphorylation may not play an important role in vivo.; conf_class=3; symbol=TOC33; Alias=ATTOC33, PPI1, PLASTID PROTEIN IMPORT 1; full_name=translocon at the outer envelope membrane of chloroplasts 33; computational_description=translocon at the outer envelope membrane of chloroplasts 33 (TOC33)%3B FUNCTIONS IN: protein binding%2C GTP binding%2C GTPase activity%2C protein homodimerization activity%3B INVOLVED IN: protein targeting to chloroplast%3B LOCATED IN: chloroplast outer membrane%2C chloroplast%2C chloroplast envelope%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: AIG1 (InterPro:IPR006703)%2C Chloroplast protein import component Toc34 (InterPro:IPR005688)%3B BEST Arabidopsis thaliana protein match is: translocon at the outer envelope membrane of chloroplasts 34 (TAIR:AT5G05000.1)%3B Has 1041 Blast hits to 1035 proteins in 244 species: Archae - 0%3B Bacteria - 399%3B Metazoa - 251%3B Fungi - 18%3B Plants - 325%3B Viruses - 0%3B Other Eukaryotes - 48 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10998188, PMID:9756470, PMID:11553737, PMID:12473690, PMID:11549763, PMID:12741849, PMID:12782294, PMID:12869544, PMID:12897258, PMID:12951325, PMID:15053763, PMID:15284497, PMID:15273297, PMID:15773849, PMID:15842619, PMID:11470820, PMID:16412428, PMID:17261588, PMID:17337454, PMID:18054337, PMID:18193034, PMID:18400179, PMID:18541539, PMID:18650403, PMID:19010773, PMID:19086173, PMID:19386807, PMID:19001421, PMID:19435889, PMID:20457805, PMID:20444229, PMID:21333657, PMID:21612577, PMID:23131143, locus:2204923; locus_type=protein_coding
AT1G02280.2	chr1:000448665	0.0	C/448665-448733,448812-448973,449055-449123,449225-449489,449714-449838,449939-450046,450151-450246	AT1G02280.2 CDS AT1G02280 ID=AT1G02280.2; Parent=AT1G02280; Name=AT1G02280.2; Note=translocon at the outer envelope membrane of chloroplasts 33; curator_summary=Encodes a GTP-binding GTP-ase. Component of the chloroplast protein import machinery. Required for import of POR B into plastids. Toc33 phosphorylation may not play an important role in vivo.; conf_class=1; symbol=TOC33; Alias=ATTOC33, PPI1, PLASTID PROTEIN IMPORT 1; full_name=translocon at the outer envelope membrane of chloroplasts 33; computational_description=translocon at the outer envelope membrane of chloroplasts 33 (TOC33)%3B FUNCTIONS IN: protein binding%2C GTP binding%2C GTPase activity%2C protein homodimerization activity%3B INVOLVED IN: protein targeting to chloroplast%3B LOCATED IN: chloroplast outer membrane%2C chloroplast%2C chloroplast envelope%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: AIG1 (InterPro:IPR006703)%2C Chloroplast protein import component Toc34 (InterPro:IPR005688)%3B BEST Arabidopsis thaliana protein match is: translocon at the outer envelope membrane of chloroplasts 34 (TAIR:AT5G05000.1)%3B Has 1041 Blast hits to 1035 proteins in 244 species: Archae - 0%3B Bacteria - 399%3B Metazoa - 251%3B Fungi - 18%3B Plants - 325%3B Viruses - 0%3B Other Eukaryotes - 48 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:10998188, PMID:9756470, PMID:11553737, PMID:12473690, PMID:11549763, PMID:12741849, PMID:12782294, PMID:12869544, PMID:12897258, PMID:12951325, PMID:15053763, PMID:15284497, PMID:15273297, PMID:15773849, PMID:15842619, PMID:11470820, PMID:16412428, PMID:17261588, PMID:17337454, PMID:18054337, PMID:18193034, PMID:18400179, PMID:18541539, PMID:18650403, PMID:19010773, PMID:19086173, PMID:19386807, PMID:19001421, PMID:19435889, PMID:20457805, PMID:20444229, PMID:21333657, PMID:21612577, PMID:23131143, locus:2204923; locus_type=protein_coding
AT1G02290.1	chr1:000450646	0.0	C/450646-451977	AT1G02290.1 CDS AT1G02290 ID=AT1G02290.1; Parent=AT1G02290; Name=AT1G02290.1; Note=hypothetical protein; conf_class=2; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G45830.1)%3B Has 134 Blast hits to 134 proteins in 37 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 54%3B Fungi - 0%3B Plants - 78%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:20032078, locus:2204868; locus_type=protein_coding
AT1G02300.1	chr1:000453288	0.0	W/453288-453365,453594-453647,453730-453810,453907-454063,454197-454336,454415-454540,454622-454840,454927-455040,455112-455147,455242-455376	AT1G02300.1 CDS AT1G02300 ID=AT1G02300.1; Parent=AT1G02300; Name=AT1G02300.1; Note=Cysteine proteinases superfamily protein; conf_class=6; computational_description=Cysteine proteinases superfamily protein%3B FUNCTIONS IN: cysteine-type endopeptidase activity%2C cysteine-type peptidase activity%3B INVOLVED IN: proteolysis%2C regulation of catalytic activity%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase C1A%2C papain (InterPro:IPR013128)%2C Peptidase C1A%2C cathepsin B (InterPro:IPR015643)%2C Peptidase C1A%2C papain C-terminal (InterPro:IPR000668)%2C Peptidase%2C cysteine peptidase active site (InterPro:IPR000169)%2C Peptidase C1A%2C propeptide (InterPro:IPR012599)%3B BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT1G02305.1)%3B Has 7127 Blast hits to 7085 proteins in 649 species: Archae - 51%3B Bacteria - 96%3B Metazoa - 3215%3B Fungi - 4%3B Plants - 1554%3B Viruses - 146%3B Other Eukaryotes - 2061 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:14617064, PMID:14697270, PMID:15047901, PMID:16911220, PMID:17259181, PMID:18650403, PMID:19453434, PMID:20736450, locus:2204873; locus_type=protein_coding
AT1G02305.1	chr1:000455816	0.0	W/455816-455902,456178-456231,456314-456394,456490-456646,456757-456761,456843-456917,457010-457135,457211-457429,457514-457627,457716-457751,457840-457974	AT1G02305.1 CDS AT1G02305 ID=AT1G02305.1; Parent=AT1G02305; Name=AT1G02305.1; Note=Cysteine proteinases superfamily protein; conf_class=3; computational_description=Cysteine proteinases superfamily protein%3B FUNCTIONS IN: cysteine-type endopeptidase activity%2C cysteine-type peptidase activity%3B INVOLVED IN: proteolysis%2C regulation of catalytic activity%3B LOCATED IN: vacuole%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase C1A%2C papain (InterPro:IPR013128)%2C Peptidase C1A%2C cathepsin B (InterPro:IPR015643)%2C Peptidase C1A%2C papain C-terminal (InterPro:IPR000668)%2C Peptidase%2C cysteine peptidase active site (InterPro:IPR000169)%2C Peptidase C1A%2C propeptide (InterPro:IPR012599)%3B BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT1G02300.1)%3B Has 7484 Blast hits to 7435 proteins in 695 species: Archae - 51%3B Bacteria - 161%3B Metazoa - 3268%3B Fungi - 4%3B Plants - 1732%3B Viruses - 146%3B Other Eukaryotes - 2122 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14697270, PMID:15215502, PMID:15539469, PMID:17645793, PMID:18650403, PMID:18775970, PMID:19453434, locus:505006093; locus_type=protein_coding
AT1G04097.1	chr1:000455880	0.0	C/455880-456198	AT1G04097.1 antisense_lncRNA AT1G04097 ID=AT1G04097.1; Parent=AT1G04097; Name=AT1G04097.1; description=Natural antisense transcript overlaps with AT1G02305; Note=Natural antisense transcript overlaps with AT1G02305; locus_type=antisense_long_noncoding_rna
AT1G02310.1	chr1:000458243	0.0	C/458243-458636,458732-458940,459021-459143,459503-459682,460323-460652	AT1G02310.1 CDS AT1G02310 ID=AT1G02310.1; Parent=AT1G02310; Name=AT1G02310.1; Note=Glycosyl hydrolase superfamily protein; conf_class=2; symbol=MAN1; full_name=endo-beta-mannanase 1; computational_description=Glycosyl hydrolase superfamily protein%3B FUNCTIONS IN: cation binding%2C hydrolase activity%2C hydrolyzing O-glycosyl compounds%2C catalytic activity%3B INVOLVED IN: carbohydrate metabolic process%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 7 plant structures%3B EXPRESSED DURING: 4 anthesis%2C petal differentiation and expansion stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: Glycoside hydrolase%2C catalytic core (InterPro:IPR017853)%2C Glycoside hydrolase%2C family 5 (InterPro:IPR001547)%2C Glycoside hydrolase%2C subgroup%2C catalytic core (InterPro:IPR013781)%3B BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT5G66460.1)%3B Has 762 Blast hits to 752 proteins in 193 species: Archae - 9%3B Bacteria - 223%3B Metazoa - 4%3B Fungi - 190%3B Plants - 306%3B Viruses - 0%3B Other Eukaryotes - 30 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15235117, PMID:20736450, PMID:20878180, PMID:24327260, locus:2204878; locus_type=protein_coding
AT1G02310.2	chr1:000458243	0.0	C/458243-458636,458732-458940,459021-459143,459503-459682,460323-460712	AT1G02310.2 CDS AT1G02310 ID=AT1G02310.2; Parent=AT1G02310; Name=AT1G02310.2; Note=Glycosyl hydrolase superfamily protein; symbol=MAN1; full_name=endo-beta-mannanase 1; computational_description=Glycosyl hydrolase superfamily protein%3B FUNCTIONS IN: cation binding%2C hydrolase activity%2C hydrolyzing O-glycosyl compounds%2C catalytic activity%3B INVOLVED IN: carbohydrate metabolic process%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 7 plant structures%3B EXPRESSED DURING: 4 anthesis%2C petal differentiation and expansion stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: Glycoside hydrolase%2C catalytic core (InterPro:IPR017853)%2C Glycoside hydrolase%2C family 5 (InterPro:IPR001547)%2C Glycoside hydrolase%2C subgroup%2C catalytic core (InterPro:IPR013781)%3B BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT5G66460.1)%3B Has 762 Blast hits to 752 proteins in 193 species: Archae - 9%3B Bacteria - 223%3B Metazoa - 4%3B Fungi - 190%3B Plants - 306%3B Viruses - 0%3B Other Eukaryotes - 30 (source: NCBI BLink).; Dbxref=PMID:15235117, PMID:20736450, PMID:20878180, PMID:24327260, locus:2204878; locus_type=protein_coding
AT1G04103.1	chr1:000459122	0.0	W/459122-459983	AT1G04103.1 antisense_lncRNA AT1G04103 ID=AT1G04103.1; Parent=AT1G04103; Name=AT1G04103.1; description=Natural antisense transcript overlaps with AT1G02310; Note=Natural antisense transcript overlaps with AT1G02310; locus_type=antisense_long_noncoding_rna
AT1G04103.2	chr1:000460325	0.0	W/460325-461921	AT1G04103.2 antisense_lncRNA AT1G04103 ID=AT1G04103.2; Parent=AT1G04103; Name=AT1G04103.2; description=Natural antisense transcript overlaps with AT1G02310; Note=Natural antisense transcript overlaps with AT1G02310; locus_type=antisense_long_noncoding_rna
AT1TE01490	chr1:000460800	0.0	C/460800-461652	AT1TE01490 transposable_element AT1TE01490 ID=AT1TE01490; Name=AT1TE01490; Alias=ATREP15
AT1G02320.1	chr1:000461828	0.0	W/461828-461974	AT1G02320.1 CDS AT1G02320 ID=AT1G02320.1; Parent=AT1G02320; Name=AT1G02320.1; Note=hypothetical protein; conf_class=4; computational_description=unknown protein%3B Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).; conf_rating=***; Dbxref=locus:2204893; locus_type=protein_coding
AT1G02330.1	chr1:000462202	0.0	C/462202-462383,462475-462632,462727-462800,462876-462999,463123-463323,463421-463521	AT1G02330.1 CDS AT1G02330 ID=AT1G02330.1; Parent=AT1G02330; Name=AT1G02330.1; Note=integrator complex subunit-like protein; conf_class=2; computational_description=CONTAINS InterPro DOMAIN/s: Hepatocellular carcinoma-associated antigen 59 (InterPro:IPR010756)%3B Has 1239 Blast hits to 998 proteins in 204 species: Archae - 4%3B Bacteria - 71%3B Metazoa - 421%3B Fungi - 109%3B Plants - 87%3B Viruses - 5%3B Other Eukaryotes - 542 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18650403, PMID:18775970, locus:2204888; locus_type=protein_coding
AT1G02335.1	chr1:000463979	0.0	C/463979-464523,464762-464876	AT1G02335.1 CDS AT1G02335 ID=AT1G02335.1; Parent=AT1G02335; Name=AT1G02335.1; Note=germin-like protein subfamily 2 member 2 precursor; curator_summary=Encodes a plasodesmata-located protein involved in regulating primary root growth by controlling phloem-mediated allocation of resources between the primary and lateral root meristems.; conf_class=1; symbol=GL22; Alias=PDGLP2, PLASMODESMAL GERMIN-LIKE PROTEIN 2; full_name=germin-like protein subfamily 2 member 2 precursor; computational_description=germin-like protein subfamily 2 member 2 precursor (GL22)%3B FUNCTIONS IN: manganese ion binding%2C nutrient reservoir activity%3B LOCATED IN: endomembrane system%2C apoplast%3B CONTAINS InterPro DOMAIN/s: Cupin%2C RmlC-type (InterPro:IPR011051)%2C Cupin 1 (InterPro:IPR006045)%2C RmlC-like jelly roll fold (InterPro:IPR014710)%2C Germin (InterPro:IPR001929)%2C Germin%2C manganese binding site (InterPro:IPR019780)%3B BEST Arabidopsis thaliana protein match is: germin-like protein 10 (TAIR:AT3G62020.1)%3B Has 2264 Blast hits to 2183 proteins in 312 species: Archae - 0%3B Bacteria - 520%3B Metazoa - 1%3B Fungi - 98%3B Plants - 1608%3B Viruses - 0%3B Other Eukaryotes - 37 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15593128, PMID:22960910, locus:2827077; locus_type=protein_coding
AT1G02340.1	chr1:000465933	0.0	C/465933-466247,466732-466797,466958-467086,467186-467552,467684-467685	AT1G02340.1 CDS AT1G02340 ID=AT1G02340.1; Parent=AT1G02340; Name=AT1G02340.1; Note=basic helix-loop-helix (bHLH) DNA-binding superfamily protein; curator_summary=Encodes a light-inducible%2C nuclear bHLH protein involved in phytochrome signaling. Mutants exhibit a long-hypocotyl phenotype only under far-red light but not under red light and are defective in other phytochrome A-related responses. Mutants also show blue light response defects. HFR1 interacts with COP1%2C co-localizes to the nuclear specks and is ubiquinated by COP1.; conf_class=2; symbol=HFR1; Alias=FBI1, REP1, REDUCED PHYTOCHROME SIGNALING 1, RSF1, REDUCED SENSITIVITY TO FAR-RED LIGHT 1; full_name=LONG HYPOCOTYL IN FAR-RED; computational_description=LONG HYPOCOTYL IN FAR-RED (HFR1)%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: phytochrome interacting factor 3 (TAIR:AT1G09530.2)%3B Has 1715 Blast hits to 1709 proteins in 90 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 4%3B Fungi - 4%3B Plants - 1707%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10982420, PMID:11090209, PMID:11118137, PMID:11148292, PMID:12061902, PMID:12472688, PMID:10995393, PMID:12679534, PMID:12826627, PMID:14645731, PMID:15705947, PMID:15741320, PMID:15960622, PMID:16500988, PMID:16813572, PMID:16786307, PMID:18556661, PMID:18974779, PMID:17699755, PMID:19482971, PMID:19851283, PMID:19808946, PMID:20305124, PMID:19619162, PMID:21093457, PMID:21205034, PMID:21265897, PMID:21692804, PMID:21928113, PMID:22631228, PMID:22827949, PMID:23093358, PMID:23224238, PMID:24179122, PMID:24377444, PMID:23503597, PMID:24609653, PMID:25630103, PMID:25627066, PMID:25647296, locus:2204898; locus_type=protein_coding
AT1G02340.2	chr1:000465933	0.0	C/465933-466247,466732-466797,466958-467086,467186-467533	AT1G02340.2 CDS AT1G02340 ID=AT1G02340.2; Parent=AT1G02340; Name=AT1G02340.2; Note=basic helix-loop-helix (bHLH) DNA-binding superfamily protein; symbol=HFR1; Alias=FBI1, REP1, REDUCED PHYTOCHROME SIGNALING 1, RSF1, REDUCED SENSITIVITY TO FAR-RED LIGHT 1; full_name=LONG HYPOCOTYL IN FAR-RED; curator_summary=Encodes a light-inducible%2C nuclear bHLH protein involved in phytochrome signaling. Mutants exhibit a long-hypocotyl phenotype only under far-red light but not under red light and are defective in other phytochrome A-related responses. Mutants also show blue light response defects. HFR1 interacts with COP1%2C co-localizes to the nuclear specks and is ubiquinated by COP1.; computational_description=LONG HYPOCOTYL IN FAR-RED (HFR1)%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: phytochrome interacting factor 3 (TAIR:AT1G09530.2)%3B Has 1715 Blast hits to 1709 proteins in 90 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 4%3B Fungi - 4%3B Plants - 1707%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=PMID:10982420, PMID:11090209, PMID:11118137, PMID:11148292, PMID:12061902, PMID:12472688, PMID:10995393, PMID:12679534, PMID:12826627, PMID:14645731, PMID:15705947, PMID:15741320, PMID:15960622, PMID:16500988, PMID:16813572, PMID:16786307, PMID:18556661, PMID:18974779, PMID:17699755, PMID:19482971, PMID:19851283, PMID:19808946, PMID:20305124, PMID:19619162, PMID:21093457, PMID:21205034, PMID:21265897, PMID:21692804, PMID:21928113, PMID:22631228, PMID:22827949, PMID:23093358, PMID:23224238, PMID:24179122, PMID:24377444, PMID:23503597, PMID:24609653, PMID:25630103, PMID:25627066, PMID:25647296, locus:2204898; locus_type=protein_coding
AT1G02350.1	chr1:000469818	0.0	W/469818-469971,470252-470288,470371-470482,470574-470693	AT1G02350.1 CDS AT1G02350 ID=AT1G02350.1; Parent=AT1G02350; Name=AT1G02350.1; Note=protoporphyrinogen oxidase-like protein; conf_class=6; computational_description=protoporphyrinogen oxidase-related%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: siroheme biosynthetic process%3B Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:16684236, locus:2204908; locus_type=protein_coding
AT1G04107.1	chr1:000471127	0.0	C/471127-471498	AT1G04107.1 transcript_region AT1G04107 ID=AT1G04107.1; Parent=AT1G04107; computational_description=novel transcribed region%3B detected in root%2C carpel%2C root apical meristem%2C receptacle%2C leaf%2C dark-grown seedling%2C light-grown seedling%2C aerial; Name=AT1G04107.1; locus_type=novel_transcribed_region
AT1G02360.1	chr1:000472138	0.0	C/472138-472507,472668-473116	AT1G02360.1 CDS AT1G02360 ID=AT1G02360.1; Parent=AT1G02360; Name=AT1G02360.1; Note=Chitinase family protein; conf_class=2; computational_description=Chitinase family protein%3B FUNCTIONS IN: chitinase activity%3B INVOLVED IN: carbohydrate metabolic process%2C cell wall macromolecule catabolic process%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: stem%2C cotyledon%2C leaf whorl%2C root%3B CONTAINS InterPro DOMAIN/s: Glycoside hydrolase%2C family 19 (InterPro:IPR016283)%2C Glycoside hydrolase%2C family 19%2C catalytic (InterPro:IPR000726)%3B BEST Arabidopsis thaliana protein match is: Chitinase family protein (TAIR:AT4G01700.1)%3B Has 2043 Blast hits to 2034 proteins in 421 species: Archae - 0%3B Bacteria - 465%3B Metazoa - 37%3B Fungi - 5%3B Plants - 1453%3B Viruses - 2%3B Other Eukaryotes - 81 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14535883, PMID:15235117, PMID:16244138, PMID:16553894, PMID:16684236, PMID:17194768, PMID:17149585, PMID:21711359, locus:2204918; locus_type=protein_coding
AT1G02360.2	chr1:000472138	0.0	C/472138-472507,472668-473254	AT1G02360.2 CDS AT1G02360 ID=AT1G02360.2; Parent=AT1G02360; Name=AT1G02360.2; Note=Chitinase family protein; computational_description=Chitinase family protein%3B FUNCTIONS IN: chitinase activity%3B INVOLVED IN: carbohydrate metabolic process%2C cell wall macromolecule catabolic process%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: stem%2C cotyledon%2C leaf whorl%2C root%3B CONTAINS InterPro DOMAIN/s: Glycoside hydrolase%2C family 19 (InterPro:IPR016283)%2C Glycoside hydrolase%2C family 19%2C catalytic (InterPro:IPR000726)%3B BEST Arabidopsis thaliana protein match is: Chitinase family protein (TAIR:AT4G01700.1)%3B Has 2043 Blast hits to 2034 proteins in 421 species: Archae - 0%3B Bacteria - 465%3B Metazoa - 37%3B Fungi - 5%3B Plants - 1453%3B Viruses - 2%3B Other Eukaryotes - 81 (source: NCBI BLink).; Dbxref=PMID:14535883, PMID:15235117, PMID:16244138, PMID:16553894, PMID:16684236, PMID:17194768, PMID:17149585, PMID:21711359, locus:2204918; locus_type=protein_coding
AT1G02360.3	chr1:000472138	0.0	C/472138-472507,472668-473272	AT1G02360.3 CDS AT1G02360 ID=AT1G02360.3; Parent=AT1G02360; Name=AT1G02360.3; Note=Chitinase family protein; computational_description=Chitinase family protein%3B FUNCTIONS IN: chitinase activity%3B INVOLVED IN: carbohydrate metabolic process%2C cell wall macromolecule catabolic process%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: stem%2C cotyledon%2C leaf whorl%2C root%3B CONTAINS InterPro DOMAIN/s: Glycoside hydrolase%2C family 19 (InterPro:IPR016283)%2C Glycoside hydrolase%2C family 19%2C catalytic (InterPro:IPR000726)%3B BEST Arabidopsis thaliana protein match is: Chitinase family protein (TAIR:AT4G01700.1)%3B Has 2043 Blast hits to 2034 proteins in 421 species: Archae - 0%3B Bacteria - 465%3B Metazoa - 37%3B Fungi - 5%3B Plants - 1453%3B Viruses - 2%3B Other Eukaryotes - 81 (source: NCBI BLink).; Dbxref=PMID:14535883, PMID:15235117, PMID:16244138, PMID:16553894, PMID:16684236, PMID:17194768, PMID:17149585, PMID:21711359, locus:2204918; locus_type=protein_coding
AT1TE01530	chr1:000474081	0.0	W/474081-474176	AT1TE01530 transposable_element AT1TE01530 ID=AT1TE01530; Name=AT1TE01530; Alias=TSCL
AT1G02370.1	chr1:000474516	0.0	W/474516-474887,475142-476383	AT1G02370.1 CDS AT1G02370 ID=AT1G02370.1; Parent=AT1G02370; Name=AT1G02370.1; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; conf_class=2; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G01990.1)%3B Has 6320 Blast hits to 3912 proteins in 155 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 44%3B Fungi - 46%3B Plants - 6080%3B Viruses - 0%3B Other Eukaryotes - 144 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15695462, locus:2204808; locus_type=protein_coding
AT1G02380.1	chr1:000477814	0.0	W/477814-478303,478525-478669,478790-478850	AT1G02380.1 CDS AT1G02380 ID=AT1G02380.1; Parent=AT1G02380; Name=AT1G02380.1; Note=transmembrane protein; conf_class=3; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01960.1)%3B Has 66 Blast hits to 66 proteins in 11 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 66%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2204903; locus_type=protein_coding
AT1G02390.1	chr1:000480921	0.0	W/480921-481619,482270-483163	AT1G02390.1 CDS AT1G02390 ID=AT1G02390.1; Parent=AT1G02390; Name=AT1G02390.1; Note=glycerol-3-phosphate acyltransferase 2; curator_summary=putative sn-glycerol-3-phosphate 2-O-acyltransferase; conf_class=1; symbol=GPAT2; Alias=ATGPAT2, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 2; full_name=GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 2; computational_description=glycerol-3-phosphate acyltransferase 2 (GPAT2)%3B FUNCTIONS IN: acyltransferase activity%3B INVOLVED IN: metabolic process%3B EXPRESSED IN: 13 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123)%3B BEST Arabidopsis thaliana protein match is: glycerol-3-phosphate acyltransferase 3 (TAIR:AT4G01950.1)%3B Has 367 Blast hits to 357 proteins in 22 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 4%3B Fungi - 0%3B Plants - 361%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12897259, PMID:16299169, PMID:17259262, PMID:18805951, PMID:20736450, PMID:22864585, PMID:23505340, locus:2204818; locus_type=protein_coding
AT1G02400.1	chr1:000486964	0.0	W/486964-487364,488720-489062,489146-489391	AT1G02400.1 CDS AT1G02400 ID=AT1G02400.1; Parent=AT1G02400; Name=AT1G02400.1; Note=gibberellin 2-oxidase 6; curator_summary=Encodes a gibberellin 2-oxidase that acts on C19 gibberellins but not C20 gibberellins.; conf_class=4; symbol=GA2OX6; Alias=ATGA2OX4, Arabidopsis thaliana gibberellin 2-oxidase 4, ATGA2OX6, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, DTA1, DOWNSTREAM TARGET OF AGL15 1; full_name=gibberellin 2-oxidase 6; computational_description=gibberellin 2-oxidase 6 (GA2OX6)%3B CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123)%3B BEST Arabidopsis thaliana protein match is: gibberellin 2-oxidase 4 (TAIR:AT1G47990.1)%3B Has 8143 Blast hits to 8109 proteins in 973 species: Archae - 0%3B Bacteria - 1087%3B Metazoa - 68%3B Fungi - 840%3B Plants - 4773%3B Viruses - 0%3B Other Eukaryotes - 1375 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:12837949, PMID:15215506, PMID:16244138, PMID:16214899, PMID:16920780, PMID:17010113, PMID:17587374, PMID:18305206, PMID:18252252, PMID:18590820, PMID:18805991, PMID:18829981, PMID:20008096, PMID:21056641, PMID:21803937, locus:2204823; locus_type=protein_coding
AT1G02400.2	chr1:000486964	0.0	W/486964-487364,488720-489116	AT1G02400.2 CDS AT1G02400 ID=AT1G02400.2; Parent=AT1G02400; Name=AT1G02400.2; Note=gibberellin 2-oxidase 6; symbol=GA2OX6; Alias=ATGA2OX4, Arabidopsis thaliana gibberellin 2-oxidase 4, ATGA2OX6, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, DTA1, DOWNSTREAM TARGET OF AGL15 1; full_name=gibberellin 2-oxidase 6; curator_summary=Encodes a gibberellin 2-oxidase that acts on C19 gibberellins but not C20 gibberellins.; computational_description=gibberellin 2-oxidase 6 (GA2OX6)%3B CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123)%3B BEST Arabidopsis thaliana protein match is: gibberellin 2-oxidase 4 (TAIR:AT1G47990.1)%3B Has 8143 Blast hits to 8109 proteins in 973 species: Archae - 0%3B Bacteria - 1087%3B Metazoa - 68%3B Fungi - 840%3B Plants - 4773%3B Viruses - 0%3B Other Eukaryotes - 1375 (source: NCBI BLink).; Dbxref=PMID:12837949, PMID:15215506, PMID:16244138, PMID:16214899, PMID:16920780, PMID:17010113, PMID:17587374, PMID:18305206, PMID:18252252, PMID:18590820, PMID:18805991, PMID:18829981, PMID:20008096, PMID:21056641, PMID:21803937, locus:2204823; locus_type=protein_coding
AT1G02405.1	chr1:000490093	0.0	C/490093-490497	AT1G02405.1 CDS AT1G02405 ID=AT1G02405.1; Parent=AT1G02405; Name=AT1G02405.1; Note=proline-rich family protein; conf_class=1; computational_description=proline-rich family protein%3B BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT1G70990.1)%3B Has 45319 Blast hits to 18313 proteins in 1048 species: Archae - 86%3B Bacteria - 6513%3B Metazoa - 15272%3B Fungi - 3775%3B Plants - 11142%3B Viruses - 2024%3B Other Eukaryotes - 6507 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12068095, PMID:12805588, locus:504956113; locus_type=protein_coding
AT1G02410.1	chr1:000491300	0.0	W/491300-491379,491488-491803,491907-491959,492086-492158,492248-492352,492443-492523,492607-492762	AT1G02410.1 CDS AT1G02410 ID=AT1G02410.1; Parent=AT1G02410; Name=AT1G02410.1; Note=cytochrome c oxidase assembly protein CtaG / Cox11 family; conf_class=2; computational_description=cytochrome c oxidase assembly protein CtaG / Cox11 family%3B FUNCTIONS IN: copper ion binding%3B INVOLVED IN: biological_process unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase assembly protein CtaG/Cox11 (InterPro:IPR007533)%3B Has 2749 Blast hits to 2749 proteins in 659 species: Archae - 0%3B Bacteria - 997%3B Metazoa - 98%3B Fungi - 130%3B Plants - 41%3B Viruses - 0%3B Other Eukaryotes - 1483 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16113211, PMID:18315867, PMID:18775970, PMID:20117084, locus:2204838; locus_type=protein_coding
AT1G02410.2	chr1:000491300	0.0	W/491300-491379,491488-491803,491907-491959,492086-492158,492248-492352,492443-492523,492607-492762	AT1G02410.2 CDS AT1G02410 ID=AT1G02410.2; Parent=AT1G02410; Name=AT1G02410.2; Note=cytochrome c oxidase assembly protein CtaG / Cox11 family; Dbxref=PMID:16113211, PMID:18315867, PMID:18775970, PMID:20117084, locus:2204838; computational_description=cytochrome c oxidase assembly protein CtaG / Cox11 family%3B FUNCTIONS IN: copper ion binding%3B INVOLVED IN: biological_process unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase assembly protein CtaG/Cox11 (InterPro:IPR007533)%3B Has 2749 Blast hits to 2749 proteins in 659 species: Archae - 0%3B Bacteria - 997%3B Metazoa - 98%3B Fungi - 130%3B Plants - 41%3B Viruses - 0%3B Other Eukaryotes - 1483 (source: NCBI BLink).; locus_type=protein_coding
AT1G02410.3	chr1:000491300	0.0	W/491300-491379,491488-491803,491907-491959,492086-492158,492248-492352,492443-492523,492607-492762	AT1G02410.3 CDS AT1G02410 ID=AT1G02410.3; Parent=AT1G02410; Name=AT1G02410.3; Note=cytochrome c oxidase assembly protein CtaG / Cox11 family; Dbxref=PMID:16113211, PMID:18315867, PMID:18775970, PMID:20117084, locus:2204838; computational_description=cytochrome c oxidase assembly protein CtaG / Cox11 family%3B FUNCTIONS IN: copper ion binding%3B INVOLVED IN: biological_process unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase assembly protein CtaG/Cox11 (InterPro:IPR007533)%3B Has 2749 Blast hits to 2749 proteins in 659 species: Archae - 0%3B Bacteria - 997%3B Metazoa - 98%3B Fungi - 130%3B Plants - 41%3B Viruses - 0%3B Other Eukaryotes - 1483 (source: NCBI BLink).; locus_type=protein_coding
AT1G02420.1	chr1:000493683	0.0	W/493683-495158	AT1G02420.1 CDS AT1G02420 ID=AT1G02420.1; Parent=AT1G02420; Name=AT1G02420.1; Note=Pentatricopeptide repeat (PPR) superfamily protein; conf_class=1; computational_description=Pentatricopeptide repeat (PPR) superfamily protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 14 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G61360.1)%3B Has 33079 Blast hits to 11325 proteins in 263 species: Archae - 4%3B Bacteria - 36%3B Metazoa - 353%3B Fungi - 350%3B Plants - 31222%3B Viruses - 0%3B Other Eukaryotes - 1114 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:2204913; locus_type=protein_coding
AT1G04117.1	chr1:000494008	0.0	C/494008-495548	AT1G04117.1 antisense_lncRNA AT1G04117 ID=AT1G04117.1; Parent=AT1G04117; Name=AT1G04117.1; description=Natural antisense transcript overlaps with AT1G02420; Note=Natural antisense transcript overlaps with AT1G02420; locus_type=antisense_long_noncoding_rna
AT1G02430.1	chr1:000495175	0.0	C/495175-495259,495350-495489,495563-495682,495757-495833,495912-496062	AT1G02430.1 CDS AT1G02430 ID=AT1G02430.1; Parent=AT1G02430; Name=AT1G02430.1; Note=ADP-ribosylation factor D1B; curator_summary=A member of ARF GTPase family. A thaliana has 21 members of this family%2C known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins.; conf_class=4; symbol=ARFD1B; Alias=ATARFD1B, ADP-ribosylation factor D1B; full_name=ADP-ribosylation factor D1B; computational_description=ADP-ribosylation factor D1B (ARFD1B)%3B FUNCTIONS IN: GTP binding%3B INVOLVED IN: N-terminal protein myristoylation%3B LOCATED IN: intracellular%3B CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688)%2C Small GTPase SAR1-type (InterPro:IPR006687)%2C ARF/SAR superfamily (InterPro:IPR006689)%3B BEST Arabidopsis thaliana protein match is: ADP-ribosylation factor D1A (TAIR:AT1G02440.1)%3B Has 8851 Blast hits to 8846 proteins in 396 species: Archae - 6%3B Bacteria - 6%3B Metazoa - 3723%3B Fungi - 1395%3B Plants - 1867%3B Viruses - 3%3B Other Eukaryotes - 1851 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:12644670, PMID:12912986, PMID:15723828, PMID:18603616, locus:2204848; locus_type=protein_coding
AT1G02430.2	chr1:000495346	0.0	C/495346-495489,495563-495682,495757-495833,495912-496062	AT1G02430.2 CDS AT1G02430 ID=AT1G02430.2; Parent=AT1G02430; Name=AT1G02430.2; Note=ADP-ribosylation factor D1B; symbol=ARFD1B; Alias=ATARFD1B, ADP-ribosylation factor D1B; full_name=ADP-ribosylation factor D1B; curator_summary=A member of ARF GTPase family. A thaliana has 21 members of this family%2C known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins.; computational_description=ADP-ribosylation factor D1B (ARFD1B)%3B FUNCTIONS IN: GTP binding%3B INVOLVED IN: N-terminal protein myristoylation%3B LOCATED IN: intracellular%3B CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688)%2C Small GTPase SAR1-type (InterPro:IPR006687)%2C ARF/SAR superfamily (InterPro:IPR006689)%3B BEST Arabidopsis thaliana protein match is: ADP-ribosylation factor D1A (TAIR:AT1G02440.1)%3B Has 8851 Blast hits to 8846 proteins in 396 species: Archae - 6%3B Bacteria - 6%3B Metazoa - 3723%3B Fungi - 1395%3B Plants - 1867%3B Viruses - 3%3B Other Eukaryotes - 1851 (source: NCBI BLink).; Dbxref=PMID:12644670, PMID:12912986, PMID:15723828, PMID:18603616, locus:2204848; locus_type=protein_coding
AT1G04123.1	chr1:000495887	0.0	W/495887-496190	AT1G04123.1 antisense_lncRNA AT1G04123 ID=AT1G04123.1; Parent=AT1G04123; Name=AT1G04123.1; description=Natural antisense transcript overlaps with AT1G02430; Note=Natural antisense transcript overlaps with AT1G02430; locus_type=antisense_long_noncoding_rna
AT1G02440.1	chr1:000496586	0.0	C/496586-496670,496760-496899,496972-497091,497165-497241,497329-497479	AT1G02440.1 CDS AT1G02440 ID=AT1G02440.1; Parent=AT1G02440; Name=AT1G02440.1; Note=ADP-ribosylation factor D1A; curator_summary=A member of ARF GTPase family. A thaliana has 21 members of this family%2C known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins.; conf_class=6; symbol=ARFD1A; Alias=ATARFD1A, ADP-ribosylation factor D1A; full_name=ADP-ribosylation factor D1A; computational_description=ADP-ribosylation factor D1A (ARFD1A)%3B FUNCTIONS IN: GTP binding%3B INVOLVED IN: N-terminal protein myristoylation%3B LOCATED IN: intracellular%3B CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688)%2C Ras GTPase (InterPro:IPR001806)%2C Small GTPase SAR1-type (InterPro:IPR006687)%2C ARF/SAR superfamily (InterPro:IPR006689)%3B BEST Arabidopsis thaliana protein match is: ADP-ribosylation factor D1B (TAIR:AT1G02430.1)%3B Has 8047 Blast hits to 8044 proteins in 397 species: Archae - 6%3B Bacteria - 20%3B Metazoa - 3487%3B Fungi - 1271%3B Plants - 1683%3B Viruses - 3%3B Other Eukaryotes - 1577 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:12644670, PMID:12912986, PMID:15723828, PMID:16146321, PMID:16824183, PMID:20736450, locus:2196075; locus_type=protein_coding
AT1G02440.2	chr1:000496756	0.0	C/496756-496899,497165-497241,497329-497479	AT1G02440.2 CDS AT1G02440 ID=AT1G02440.2; Parent=AT1G02440; Name=AT1G02440.2; Note=ADP-ribosylation factor D1A; symbol=ARFD1A; Alias=ATARFD1A, ADP-ribosylation factor D1A; full_name=ADP-ribosylation factor D1A; curator_summary=A member of ARF GTPase family. A thaliana has 21 members of this family%2C known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins.; computational_description=ADP-ribosylation factor D1A (ARFD1A)%3B FUNCTIONS IN: GTP binding%3B INVOLVED IN: N-terminal protein myristoylation%3B LOCATED IN: intracellular%3B CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688)%2C Ras GTPase (InterPro:IPR001806)%2C Small GTPase SAR1-type (InterPro:IPR006687)%2C ARF/SAR superfamily (InterPro:IPR006689)%3B BEST Arabidopsis thaliana protein match is: ADP-ribosylation factor D1B (TAIR:AT1G02430.1)%3B Has 8047 Blast hits to 8044 proteins in 397 species: Archae - 6%3B Bacteria - 20%3B Metazoa - 3487%3B Fungi - 1271%3B Plants - 1683%3B Viruses - 3%3B Other Eukaryotes - 1577 (source: NCBI BLink).; Dbxref=PMID:12644670, PMID:12912986, PMID:15723828, PMID:16146321, PMID:16824183, PMID:20736450, locus:2196075; locus_type=protein_coding
AT1G02450.1	chr1:000498052	0.0	C/498052-498480	AT1G02450.1 CDS AT1G02450 ID=AT1G02450.1; Parent=AT1G02450; Name=AT1G02450.1; Note=NIM1-interacting 1; curator_summary=NIMIN1 modulates PR gene expression according the following model: NPR1 forms a ternary complex with NIMIN1 and TGA factors upon SAR induction that binds to a positive regulatory cis-element of the PR-1 promoter%2C termed LS7. This leads to PR-1 gene induction. NIMIN1 decreases transcriptional activation%2C possibly through its EAR motif%2C which results in fine-tuning of PR-1 gene expression.; conf_class=1; symbol=NIMIN1; Alias=NIMIN-1; full_name=NIM1-interacting 1; computational_description=NIM1-interacting 1 (NIMIN1)%3B FUNCTIONS IN: protein binding%3B INVOLVED IN: regulation of systemic acquired resistance%2C defense response to bacterium%2C negative regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 13 growth stages%3B BEST Arabidopsis thaliana protein match is: systemic acquired resistance (SAR) regulator protein NIMIN-1-related (TAIR:AT4G01895.1)%3B Has 50 Blast hits to 50 proteins in 12 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 5%3B Fungi - 2%3B Plants - 35%3B Viruses - 0%3B Other Eukaryotes - 8 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15749762, PMID:16553894, PMID:16648215, PMID:16824183, PMID:17142483, PMID:17189325, PMID:17181774, PMID:17496105, PMID:17581762, PMID:18307823, PMID:18567827, PMID:18650403, PMID:19825560, PMID:20181750, PMID:20198573, PMID:20507508, PMID:20565658, PMID:21118350, PMID:23630533, locus:2196065; locus_type=protein_coding
AT1TE01610	chr1:000499077	0.0	C/499077-499134	AT1TE01610 transposable_element AT1TE01610 ID=AT1TE01610; Name=AT1TE01610; Alias=HELITRONY3
AT1TE01615	chr1:000499135	0.0	C/499135-501371	AT1TE01615 transposable_element AT1TE01615 ID=AT1TE01615; Name=AT1TE01615; Alias=ATREP3
AT1TE01620	chr1:000501372	0.0	C/501372-501635	AT1TE01620 transposable_element AT1TE01620 ID=AT1TE01620; Name=AT1TE01620; Alias=ATREP3
AT1TE01625	chr1:000501636	0.0	W/501636-501971	AT1TE01625 transposable_element AT1TE01625 ID=AT1TE01625; Name=AT1TE01625; Alias=ATREP10D
AT1G02460.1	chr1:000504897	0.0	C/504897-505407,505499-505583,505845-506052,506137-506184,506367-506534,506644-507099	AT1G02460.1 CDS AT1G02460 ID=AT1G02460.1; Parent=AT1G02460; Name=AT1G02460.1; Note=Pectin lyase-like superfamily protein; conf_class=1; computational_description=Pectin lyase-like superfamily protein%3B FUNCTIONS IN: polygalacturonase activity%3B INVOLVED IN: carbohydrate metabolic process%3B EXPRESSED IN: stem%2C root%2C stamen%2C seed%3B EXPRESSED DURING: 4 anthesis%2C E expanded cotyledon stage%3B CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050)%2C Glycoside hydrolase%2C family 28 (InterPro:IPR000743)%2C Pectin lyase fold (InterPro:IPR012334)%2C Parallel beta-helix repeat (InterPro:IPR006626)%3B BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT4G01890.1)%3B Has 5413 Blast hits to 5130 proteins in 651 species: Archae - 6%3B Bacteria - 1539%3B Metazoa - 261%3B Fungi - 1343%3B Plants - 1850%3B Viruses - 100%3B Other Eukaryotes - 314 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12509334, PMID:16033780, PMID:16615871, PMID:16927204, PMID:17010199, PMID:18567827, PMID:20736450, PMID:23056537, locus:2196055; locus_type=protein_coding
AT1G02470.1	chr1:000511916	0.0	C/511916-511990,512074-512121,512214-512262,512378-512430,512525-512620,513147-513246,513332-513573	AT1G02470.1 CDS AT1G02470 ID=AT1G02470.1; Parent=AT1G02470; Name=AT1G02470.1; Note=Polyketide cyclase/dehydrase and lipid transport superfamily protein; conf_class=2; computational_description=Polyketide cyclase/dehydrase and lipid transport superfamily protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 10 plant structures%3B EXPRESSED DURING: 4 anthesis%2C C globular stage%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031)%3B BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT1G02475.1)%3B Has 391 Blast hits to 391 proteins in 131 species: Archae - 0%3B Bacteria - 247%3B Metazoa - 0%3B Fungi - 0%3B Plants - 54%3B Viruses - 0%3B Other Eukaryotes - 90 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:20736450, locus:2196165; locus_type=protein_coding
AT1G02470.2	chr1:000512059	0.0	C/512059-512121,512214-512262,512378-512430,512525-512620,513147-513246,513332-513573	AT1G02470.2 CDS AT1G02470 ID=AT1G02470.2; Parent=AT1G02470; Name=AT1G02470.2; Note=Polyketide cyclase/dehydrase and lipid transport superfamily protein; conf_class=2; computational_description=Polyketide cyclase/dehydrase and lipid transport superfamily protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 10 plant structures%3B EXPRESSED DURING: 4 anthesis%2C C globular stage%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031)%3B BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT1G02475.1)%3B Has 391 Blast hits to 391 proteins in 131 species: Archae - 0%3B Bacteria - 247%3B Metazoa - 0%3B Fungi - 0%3B Plants - 54%3B Viruses - 0%3B Other Eukaryotes - 90 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:20736450, locus:2196165; locus_type=protein_coding
AT1TE01660	chr1:000512671	0.0	W/512671-512692	AT1TE01660 transposable_element AT1TE01660 ID=AT1TE01660; Name=AT1TE01660; Alias=ATMU3N1
AT1TE01665	chr1:000512693	0.0	C/512693-513136	AT1TE01665 transposable_element AT1TE01665 ID=AT1TE01665; Name=AT1TE01665; Alias=ATMU3N1
AT1G02475.1	chr1:000514110	0.0	C/514110-514184,514271-514318,514422-514470,514553-514605,514705-514800,514892-514991,515093-515331	AT1G02475.1 CDS AT1G02475 ID=AT1G02475.1; Parent=AT1G02475; Name=AT1G02475.1; Note=Polyketide cyclase/dehydrase and lipid transport superfamily protein; conf_class=2; computational_description=Polyketide cyclase/dehydrase and lipid transport superfamily protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031)%3B BEST Arabidopsis thaliana protein match is: Polyketide cyclase / dehydrase and lipid transport protein (TAIR:AT4G01883.1)%3B Has 515 Blast hits to 515 proteins in 169 species: Archae - 0%3B Bacteria - 342%3B Metazoa - 0%3B Fungi - 0%3B Plants - 56%3B Viruses - 0%3B Other Eukaryotes - 117 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:20736450, locus:505006094; locus_type=protein_coding
AT1G02480.1	chr1:000515494	0.0	W/515494-515566	AT1G02480.1 tRNA AT1G02480 ID=AT1G02480.1; Parent=AT1G02480; Note=tRNA-Phe; computational_description=tRNA-Phe (anticodon: GAA); Dbxref=PMID:8980477, PMID:23066098, PMID:8980477, locus:3691872; Name=AT1G02480.1; locus_type=pre_trna
AT1G02490.1	chr1:000516618	0.0	W/516618-516734	AT1G02490.1 CDS AT1G02490 ID=AT1G02490.1; Parent=AT1G02490; Name=AT1G02490.1; Note=hypothetical protein; conf_class=8; computational_description=unknown protein%3B Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).; conf_rating=*; Dbxref=locus:2196150; locus_type=protein_coding
AT1G02500.1	chr1:000519037	0.0	W/519037-520218	AT1G02500.1 CDS AT1G02500 ID=AT1G02500.1; Parent=AT1G02500; Name=AT1G02500.1; Note=S-adenosylmethionine synthetase 1; curator_summary=encodes a S-adenosylmethionine synthetase. SAM1 is regulated by protein S-nitrosylation. The covalent binding of nitric oxide (NO) to the Cys114 residue inhibits the enzyme activity.; conf_class=2; symbol=SAM1; Alias=AtSAM1, MAT1, METK1, SAM-1, S-ADENOSYLMETHIONINE SYNTHETASE-1; full_name=S-adenosylmethionine synthetase 1; computational_description=S-adenosylmethionine synthetase 1 (SAM1)%3B FUNCTIONS IN: methionine adenosyltransferase activity%3B INVOLVED IN: response to cadmium ion%2C response to salt stress%2C ethylene biosynthetic process%2C S-adenosylmethionine biosynthetic process%3B LOCATED IN: cell wall%2C plasma membrane%2C membrane%3B EXPRESSED IN: 30 plant structures%3B EXPRESSED DURING: 17 growth stages%3B CONTAINS InterPro DOMAIN/s: S-adenosylmethionine synthetase (InterPro:IPR002133)%2C S-adenosylmethionine synthetase superfamily (InterPro:IPR022636)%2C S-adenosylmethionine synthetase%2C N-terminal (InterPro:IPR022628)%2C S-adenosylmethionine synthetase%2C C-terminal (InterPro:IPR022630)%2C S-adenosylmethionine synthetase%2C conserved site (InterPro:IPR022631)%2C S-adenosylmethionine synthetase%2C central domain (InterPro:IPR022629)%3B BEST Arabidopsis thaliana protein match is: S-adenosylmethionine synthetase 2 (TAIR:AT4G01850.2)%3B Has 10905 Blast hits to 10897 proteins in 2898 species: Archae - 12%3B Bacteria - 5497%3B Metazoa - 373%3B Fungi - 167%3B Plants - 706%3B Viruses - 1%3B Other Eukaryotes - 4149 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10820326, PMID:1850833, PMID:2482229, PMID:2535470, PMID:11118604, PMID:11454228, PMID:16311726, PMID:16365035, PMID:18775970, PMID:20118269, PMID:20627899, PMID:21316254, PMID:21708264, locus:2196160; locus_type=protein_coding
AT1G02500.2	chr1:000519037	0.0	W/519037-520218	AT1G02500.2 CDS AT1G02500 ID=AT1G02500.2; Parent=AT1G02500; Name=AT1G02500.2; Note=S-adenosylmethionine synthetase 1; curator_summary=encodes a S-adenosylmethionine synthetase. SAM1 is regulated by protein S-nitrosylation. The covalent binding of nitric oxide (NO) to the Cys114 residue inhibits the enzyme activity.; conf_class=2; symbol=SAM1; Alias=AtSAM1, MAT1, METK1, SAM-1, S-ADENOSYLMETHIONINE SYNTHETASE-1; full_name=S-adenosylmethionine synthetase 1; computational_description=S-adenosylmethionine synthetase 1 (SAM1)%3B FUNCTIONS IN: methionine adenosyltransferase activity%3B INVOLVED IN: response to cadmium ion%2C response to salt stress%2C ethylene biosynthetic process%2C S-adenosylmethionine biosynthetic process%3B LOCATED IN: cell wall%2C plasma membrane%2C membrane%3B EXPRESSED IN: 30 plant structures%3B EXPRESSED DURING: 17 growth stages%3B CONTAINS InterPro DOMAIN/s: S-adenosylmethionine synthetase (InterPro:IPR002133)%2C S-adenosylmethionine synthetase superfamily (InterPro:IPR022636)%2C S-adenosylmethionine synthetase%2C N-terminal (InterPro:IPR022628)%2C S-adenosylmethionine synthetase%2C C-terminal (InterPro:IPR022630)%2C S-adenosylmethionine synthetase%2C conserved site (InterPro:IPR022631)%2C S-adenosylmethionine synthetase%2C central domain (InterPro:IPR022629)%3B BEST Arabidopsis thaliana protein match is: S-adenosylmethionine synthetase 2 (TAIR:AT4G01850.2)%3B Has 10905 Blast hits to 10897 proteins in 2898 species: Archae - 12%3B Bacteria - 5497%3B Metazoa - 373%3B Fungi - 167%3B Plants - 706%3B Viruses - 1%3B Other Eukaryotes - 4149 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10820326, PMID:1850833, PMID:2482229, PMID:2535470, PMID:11118604, PMID:11454228, PMID:16311726, PMID:16365035, PMID:18775970, PMID:20118269, PMID:20627899, PMID:21316254, PMID:21708264, locus:2196160; locus_type=protein_coding
AT1G02510.1	chr1:000520687	0.0	C/520687-520804,520890-521626	AT1G02510.1 CDS AT1G02510 ID=AT1G02510.1; Parent=AT1G02510; Name=AT1G02510.1; Note=Outward rectifying potassium channel protein; curator_summary=Encodes AtTPK4%2C a member of the Arabidopsis thaliana K+ channel family of AtTPK/KCO proteins. AtTPK4 is targeted to the plasma membrane. In contrast other members of the AtTPK proteins are located in tonoplast. AtTPK4 forms a voltage-independent K+ channel that is blocked by extracellular calcium ions. May form homomeric ion channels in vivo.; conf_class=1; symbol=TPK4; computational_description=TPK4%3B FUNCTIONS IN: outward rectifier potassium channel activity%3B INVOLVED IN: potassium ion transport%3B LOCATED IN: membrane%3B CONTAINS InterPro DOMAIN/s: Potassium channel%2C two pore-domain (InterPro:IPR003280)%2C Ion transport 2 (InterPro:IPR013099)%3B BEST Arabidopsis thaliana protein match is: Ca2+ activated outward rectifying K+ channel 5 (TAIR:AT4G01840.1)%3B Has 5041 Blast hits to 4858 proteins in 1159 species: Archae - 172%3B Bacteria - 2078%3B Metazoa - 1475%3B Fungi - 174%3B Plants - 227%3B Viruses - 19%3B Other Eukaryotes - 896 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11500563, PMID:14675456, PMID:14730065, PMID:15505206, PMID:16607029, PMID:19825594, PMID:20736450, PMID:20712621, PMID:21697507, locus:2196155; locus_type=protein_coding
AT1G02520.1	chr1:000524134	0.0	W/524134-524436,524521-524575,524662-524837,524917-525138,525224-525462,525546-527202,527311-527577,527658-527921,528010-528309,528392-528745	AT1G02520.1 CDS AT1G02520 ID=AT1G02520.1; Parent=AT1G02520; Name=AT1G02520.1; Note=P-glycoprotein 11; curator_summary=Encodes an ATP-binding cassette (ABC) transporter. Expressed in the vascular tissue of primary stem.; conf_class=6; symbol=ABCB11; Alias=MDR8, multi-drug resistance 8, PGP11, P-glycoprotein 11; full_name=ATP-binding cassette B11; computational_description=P-glycoprotein 11 (PGP11)%3B FUNCTIONS IN: ATPase activity%2C coupled to transmembrane movement of substances%3B INVOLVED IN: transport%2C transmembrane transport%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: callus%3B CONTAINS InterPro DOMAIN/s: ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C ABC transporter-like (InterPro:IPR003439)%2C ABC transporter%2C transmembrane domain%2C type 1 (InterPro:IPR011527)%2C ABC transporter integral membrane type 1 (InterPro:IPR017940)%2C ABC transporter%2C transmembrane domain (InterPro:IPR001140)%2C ABC transporter%2C conserved site (InterPro:IPR017871)%3B BEST Arabidopsis thaliana protein match is: P-glycoprotein 12 (TAIR:AT1G02530.1)%3B Has 844961 Blast hits to 391444 proteins in 4162 species: Archae - 14749%3B Bacteria - 659839%3B Metazoa - 18308%3B Fungi - 13140%3B Plants - 9783%3B Viruses - 35%3B Other Eukaryotes - 129107 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:11346655, PMID:11855639, PMID:15308754, PMID:15381434, PMID:15618420, PMID:16618929, PMID:17164256, PMID:18299247, PMID:20736450, PMID:21239383, locus:2196145; locus_type=protein_coding
AT1G02520.2	chr1:000524134	0.0	W/524134-524436,524521-524575,524662-524837,524917-525138,525224-525462,525546-527202,527311-527577,527658-527921,528010-528309,528392-528745	AT1G02520.2 CDS AT1G02520 ID=AT1G02520.2; Parent=AT1G02520; Name=AT1G02520.2; Note=P-glycoprotein 11; symbol=ABCB11; Alias=MDR8, multi-drug resistance 8, PGP11, P-glycoprotein 11; full_name=ATP-binding cassette B11; Dbxref=PMID:11346655, PMID:11855639, PMID:15308754, PMID:15381434, PMID:15618420, PMID:16618929, PMID:17164256, PMID:18299247, PMID:20736450, PMID:21239383, locus:2196145; curator_summary=Encodes an ATP-binding cassette (ABC) transporter. Expressed in the vascular tissue of primary stem.; computational_description=P-glycoprotein 11 (PGP11)%3B FUNCTIONS IN: ATPase activity%2C coupled to transmembrane movement of substances%3B INVOLVED IN: transport%2C transmembrane transport%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: callus%3B CONTAINS InterPro DOMAIN/s: ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C ABC transporter-like (InterPro:IPR003439)%2C ABC transporter%2C transmembrane domain%2C type 1 (InterPro:IPR011527)%2C ABC transporter integral membrane type 1 (InterPro:IPR017940)%2C ABC transporter%2C transmembrane domain (InterPro:IPR001140)%2C ABC transporter%2C conserved site (InterPro:IPR017871)%3B BEST Arabidopsis thaliana protein match is: P-glycoprotein 12 (TAIR:AT1G02530.1)%3B Has 844961 Blast hits to 391444 proteins in 4162 species: Archae - 14749%3B Bacteria - 659839%3B Metazoa - 18308%3B Fungi - 13140%3B Plants - 9783%3B Viruses - 35%3B Other Eukaryotes - 129107 (source: NCBI BLink).; locus_type=protein_coding
AT1G02520.3	chr1:000524134	0.0	W/524134-524436,524521-524575,524662-524837,524917-525138,525224-525462,525546-527202,527311-527577,527658-527921,528010-528309,528392-528745	AT1G02520.3 CDS AT1G02520 ID=AT1G02520.3; Parent=AT1G02520; Name=AT1G02520.3; Note=P-glycoprotein 11; symbol=ABCB11; Alias=MDR8, multi-drug resistance 8, PGP11, P-glycoprotein 11; full_name=ATP-binding cassette B11; Dbxref=PMID:11346655, PMID:11855639, PMID:15308754, PMID:15381434, PMID:15618420, PMID:16618929, PMID:17164256, PMID:18299247, PMID:20736450, PMID:21239383, locus:2196145; curator_summary=Encodes an ATP-binding cassette (ABC) transporter. Expressed in the vascular tissue of primary stem.; computational_description=P-glycoprotein 11 (PGP11)%3B FUNCTIONS IN: ATPase activity%2C coupled to transmembrane movement of substances%3B INVOLVED IN: transport%2C transmembrane transport%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: callus%3B CONTAINS InterPro DOMAIN/s: ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C ABC transporter-like (InterPro:IPR003439)%2C ABC transporter%2C transmembrane domain%2C type 1 (InterPro:IPR011527)%2C ABC transporter integral membrane type 1 (InterPro:IPR017940)%2C ABC transporter%2C transmembrane domain (InterPro:IPR001140)%2C ABC transporter%2C conserved site (InterPro:IPR017871)%3B BEST Arabidopsis thaliana protein match is: P-glycoprotein 12 (TAIR:AT1G02530.1)%3B Has 844961 Blast hits to 391444 proteins in 4162 species: Archae - 14749%3B Bacteria - 659839%3B Metazoa - 18308%3B Fungi - 13140%3B Plants - 9783%3B Viruses - 35%3B Other Eukaryotes - 129107 (source: NCBI BLink).; locus_type=protein_coding
AT1TE01710	chr1:000529161	0.0	W/529161-529576	AT1TE01710 transposable_element AT1TE01710 ID=AT1TE01710; Name=AT1TE01710; Alias=HELITRON4
AT1G02530.1	chr1:000529836	0.0	W/529836-530099,530182-530236,530403-530578,530681-530902,530980-531218,531325-533005,533079-533345,533453-533716,533808-534107,534189-534542	AT1G02530.1 CDS AT1G02530 ID=AT1G02530.1; Parent=AT1G02530; Name=AT1G02530.1; Note=P-glycoprotein 12; conf_class=1; symbol=ABCB12; Alias=PGP12, P-glycoprotein 12; full_name=ATP-binding cassette B12; computational_description=P-glycoprotein 12 (PGP12)%3B FUNCTIONS IN: ATPase activity%2C coupled to transmembrane movement of substances%3B INVOLVED IN: response to cyclopentenone%3B LOCATED IN: integral to membrane%3B CONTAINS InterPro DOMAIN/s: ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C ABC transporter-like (InterPro:IPR003439)%2C ABC transporter%2C transmembrane domain%2C type 1 (InterPro:IPR011527)%2C ABC transporter integral membrane type 1 (InterPro:IPR017940)%2C ABC transporter%2C transmembrane domain (InterPro:IPR001140)%2C ABC transporter%2C conserved site (InterPro:IPR017871)%3B BEST Arabidopsis thaliana protein match is: P-glycoprotein 11 (TAIR:AT1G02520.1)%3B Has 834511 Blast hits to 387558 proteins in 4042 species: Archae - 14726%3B Bacteria - 649276%3B Metazoa - 18491%3B Fungi - 13092%3B Plants - 9791%3B Viruses - 35%3B Other Eukaryotes - 129100 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11346655, PMID:11855639, PMID:16510518, PMID:17227549, PMID:18299247, PMID:18334669, PMID:20736450, locus:2196135; locus_type=protein_coding
AT1G02530.2	chr1:000529836	0.0	W/529836-530099,530182-530236,530403-530578,530681-530902,530980-531218,531325-533005,533079-533354	AT1G02530.2 CDS AT1G02530 ID=AT1G02530.2; Parent=AT1G02530; Name=AT1G02530.2; Note=P-glycoprotein 12; symbol=ABCB12; Alias=PGP12, P-glycoprotein 12; full_name=ATP-binding cassette B12; computational_description=P-glycoprotein 12 (PGP12)%3B FUNCTIONS IN: ATPase activity%2C coupled to transmembrane movement of substances%3B INVOLVED IN: response to cyclopentenone%3B LOCATED IN: integral to membrane%3B CONTAINS InterPro DOMAIN/s: ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C ABC transporter-like (InterPro:IPR003439)%2C ABC transporter%2C transmembrane domain%2C type 1 (InterPro:IPR011527)%2C ABC transporter integral membrane type 1 (InterPro:IPR017940)%2C ABC transporter%2C transmembrane domain (InterPro:IPR001140)%2C ABC transporter%2C conserved site (InterPro:IPR017871)%3B BEST Arabidopsis thaliana protein match is: P-glycoprotein 11 (TAIR:AT1G02520.1)%3B Has 834511 Blast hits to 387558 proteins in 4042 species: Archae - 14726%3B Bacteria - 649276%3B Metazoa - 18491%3B Fungi - 13092%3B Plants - 9791%3B Viruses - 35%3B Other Eukaryotes - 129100 (source: NCBI BLink).; Dbxref=PMID:11346655, PMID:11855639, PMID:16510518, PMID:17227549, PMID:18299247, PMID:18334669, PMID:20736450, locus:2196135; locus_type=protein_coding
AT1G02540.1	chr1:000534827	0.0	C/534827-535699	AT1G02540.1 CDS AT1G02540 ID=AT1G02540.1; Parent=AT1G02540; Name=AT1G02540.1; Note=hypothetical protein; conf_class=8; computational_description=unknown protein%3B Has 3327 Blast hits to 2216 proteins in 265 species: Archae - 18%3B Bacteria - 202%3B Metazoa - 802%3B Fungi - 283%3B Plants - 84%3B Viruses - 187%3B Other Eukaryotes - 1751 (source: NCBI BLink).; conf_rating=*; Dbxref=locus:2196100; locus_type=protein_coding
AT1G02550.1	chr1:000536483	0.0	W/536483-537211	AT1G02550.1 CDS AT1G02550 ID=AT1G02550.1; Parent=AT1G02550; Name=AT1G02550.1; Note=Plant invertase/pectin methylesterase inhibitor superfamily protein; conf_class=1; computational_description=Plant invertase/pectin methylesterase inhibitor superfamily protein%3B FUNCTIONS IN: enzyme inhibitor activity%2C pectinesterase inhibitor activity%2C pectinesterase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501)%3B BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT2G47340.1)%3B Has 183 Blast hits to 176 proteins in 22 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1%3B Fungi - 0%3B Plants - 182%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:23791732, locus:2196130; locus_type=protein_coding
AT1TE01740	chr1:000537238	0.0	W/537238-537593	AT1TE01740 transposable_element AT1TE01740 ID=AT1TE01740; Name=AT1TE01740; Alias=ATREP4
AT1G02560.1	chr1:000538000	0.0	W/538000-538130,538209-538328,538419-538533,538627-538719,538808-538853,538936-539008,539255-539289,539391-539479,539611-539805	AT1G02560.1 CDS AT1G02560 ID=AT1G02560.1; Parent=AT1G02560; Name=AT1G02560.1; Note=nuclear encoded CLP protease 5; curator_summary=One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).; conf_class=2; symbol=CLPP5; Alias=NCLPP1, NUCLEAR-ENCODED CLPP 1, NCLPP5, NUCLEAR CLPP 5; full_name=nuclear encoded CLP protease 5; computational_description=nuclear encoded CLP protease 5 (CLPP5)%3B FUNCTIONS IN: serine-type endopeptidase activity%3B INVOLVED IN: peptidyl-cysteine S-nitrosylation%3B LOCATED IN: in 7 components%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase S14%2C ClpP%2C active site (InterPro:IPR018215)%2C Peptidase S14%2C ClpP (InterPro:IPR001907)%3B BEST Arabidopsis thaliana protein match is: CLP protease proteolytic subunit 3 (TAIR:AT1G66670.1)%3B Has 13512 Blast hits to 13510 proteins in 3028 species: Archae - 2%3B Bacteria - 8525%3B Metazoa - 147%3B Fungi - 82%3B Plants - 1082%3B Viruses - 85%3B Other Eukaryotes - 3589 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10427773, PMID:11278690, PMID:12185496, PMID:14576160, PMID:14593120, PMID:15829605, PMID:15998247, PMID:16766689, PMID:16895613, PMID:16980539, PMID:17181860, PMID:18297659, PMID:19525416, PMID:23548781, locus:2196120; locus_type=protein_coding
AT1TE01745	chr1:000540269	0.0	C/540269-540416	AT1TE01745 transposable_element AT1TE01745 ID=AT1TE01745; Name=AT1TE01745; Alias=ATREP14
AT1TE01750	chr1:000540417	0.0	C/540417-540985	AT1TE01750 transposable_element AT1TE01750 ID=AT1TE01750; Name=AT1TE01750; Alias=ATREP2
AT1TE01755	chr1:000540986	0.0	C/540986-541195	AT1TE01755 transposable_element AT1TE01755 ID=AT1TE01755; Name=AT1TE01755; Alias=HELITRONY1A
AT1G02570.1	chr1:000541380	0.0	W/541380-542216	AT1G02570.1 CDS AT1G02570 ID=AT1G02570.1; Parent=AT1G02570; Name=AT1G02570.1; Note=transmembrane protein; conf_class=1; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02575.1)%3B Has 108 Blast hits to 55 proteins in 6 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 108%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:20736450, locus:2196105; locus_type=protein_coding
AT1G02575.1	chr1:000543153	0.0	W/543153-543983	AT1G02575.1 CDS AT1G02575 ID=AT1G02575.1; Parent=AT1G02575; Name=AT1G02575.1; Note=transmembrane protein; conf_class=1; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02570.1).; conf_rating=*****; Dbxref=locus:6530298127; locus_type=protein_coding
AT1TE01760	chr1:000543981	0.0	W/543981-544642	AT1TE01760 transposable_element AT1TE01760 ID=AT1TE01760; Name=AT1TE01760; Alias=ATREP1
AT1G02580.1	chr1:000544796	0.0	W/544796-544804,544973-545062,545632-545963,546062-546235,546313-546400,546512-546637,546727-546774,546871-546939,547024-547172,547248-547374,547463-547671,547748-547879,547970-548051,548134-548181,548311-548439,548525-548602,548815-548994	AT1G02580.1 CDS AT1G02580 ID=AT1G02580.1; Parent=AT1G02580; Name=AT1G02580.1; Note=SET domain-containing protein; curator_summary=Encodes a putative transcription factor MEDEA (MEA) that negatively regulates seed development in the absence of fertilization. Mutations in this locus result in embryo lethality. MEA is a Polycomb group gene that is imprinted in the endosperm. The maternal allele is expressed and the paternal allele is silent. MEA is controlled by DEMETER (DME)%2C a DNA glycosylase required to activate MEA expression%2C and METHYLTRANSFERASE I (MET1)%2C which maintains CG methylation at the MEA locus. MEA is involved in the negative regulation of its own imprinted gene expression%3B the effect is not only allele-specific but also dynamically regulated during seed development. In the ovule%2C the MEA transcripts are accumulated at their highest level before fertilization and gradually decrease after fertilization; conf_class=1; symbol=MEA; Alias=EMB173, EMBRYO DEFECTIVE 173, FIS1, FERTILIZATION INDEPENDENT SEED 1, SDG5, SET DOMAIN-CONTAINING PROTEIN 5; full_name=MEDEA; computational_description=MEDEA (MEA)%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C SET domain (InterPro:IPR001214)%3B BEST Arabidopsis thaliana protein match is: SET domain-containing protein (TAIR:AT4G02020.1)%3B Has 4870 Blast hits to 4762 proteins in 465 species: Archae - 0%3B Bacteria - 401%3B Metazoa - 1924%3B Fungi - 484%3B Plants - 1009%3B Viruses - 0%3B Other Eukaryotes - 1052 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:10962025, PMID:10722305, PMID:10580004, PMID:10521524, PMID:10508576, PMID:10097185, PMID:9874812, PMID:9545225, PMID:9108133, PMID:9663380, PMID:11118137, PMID:11114524, PMID:11250158, PMID:11148284, PMID:12150995, PMID:12150899, PMID:11931224, PMID:12524359, PMID:12815071, PMID:12805620, PMID:12932340, PMID:12970192, PMID:14667411, PMID:15020747, PMID:15151989, PMID:15128940, PMID:15469499, PMID:15619622, PMID:15653395, PMID:16120596, PMID:16469697, PMID:16469694, PMID:16527743, PMID:16651654, PMID:16648367, PMID:16824920, PMID:16878125, PMID:16924116, PMID:16949328, PMID:17181776, PMID:17965055, PMID:17964287, PMID:17949979, PMID:18303047, PMID:18723879, PMID:18976913, PMID:19121105, PMID:17637669, PMID:19126870, PMID:19783734, PMID:19779546, PMID:19825651, PMID:20179140, PMID:20333248, PMID:20406451, PMID:21240189, PMID:21282328, PMID:21307831, PMID:21518889, PMID:21617372, PMID:22519754, PMID:22855791, PMID:23064319, PMID:23146178, PMID:23506837, PMID:24339783, PMID:25569774, locus:2196110; locus_type=protein_coding
AT1G02580.2	chr1:000544796	0.0	W/544796-544804,544973-545062,545632-545963,546062-546235,546313-546400,546512-546637,546727-546774,546871-546939,547024-547172,547248-547374,547463-547671,547748-547879,547970-548051,548134-548253	AT1G02580.2 CDS AT1G02580 ID=AT1G02580.2; Parent=AT1G02580; Name=AT1G02580.2; Note=SET domain-containing protein; symbol=MEA; Alias=EMB173, EMBRYO DEFECTIVE 173, FIS1, FERTILIZATION INDEPENDENT SEED 1, SDG5, SET DOMAIN-CONTAINING PROTEIN 5; full_name=MEDEA; curator_summary=Encodes a putative transcription factor MEDEA (MEA) that negatively regulates seed development in the absence of fertilization. Mutations in this locus result in embryo lethality. MEA is a Polycomb group gene that is imprinted in the endosperm. The maternal allele is expressed and the paternal allele is silent. MEA is controlled by DEMETER (DME)%2C a DNA glycosylase required to activate MEA expression%2C and METHYLTRANSFERASE I (MET1)%2C which maintains CG methylation at the MEA locus. MEA is involved in the negative regulation of its own imprinted gene expression%3B the effect is not only allele-specific but also dynamically regulated during seed development. In the ovule%2C the MEA transcripts are accumulated at their highest level before fertilization and gradually decrease after fertilization; computational_description=MEDEA (MEA)%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C SET domain (InterPro:IPR001214)%3B BEST Arabidopsis thaliana protein match is: SET domain-containing protein (TAIR:AT4G02020.1)%3B Has 4870 Blast hits to 4762 proteins in 465 species: Archae - 0%3B Bacteria - 401%3B Metazoa - 1924%3B Fungi - 484%3B Plants - 1009%3B Viruses - 0%3B Other Eukaryotes - 1052 (source: NCBI BLink).; Dbxref=PMID:10962025, PMID:10722305, PMID:10580004, PMID:10521524, PMID:10508576, PMID:10097185, PMID:9874812, PMID:9545225, PMID:9108133, PMID:9663380, PMID:11118137, PMID:11114524, PMID:11250158, PMID:11148284, PMID:12150995, PMID:12150899, PMID:11931224, PMID:12524359, PMID:12815071, PMID:12805620, PMID:12932340, PMID:12970192, PMID:14667411, PMID:15020747, PMID:15151989, PMID:15128940, PMID:15469499, PMID:15619622, PMID:15653395, PMID:16120596, PMID:16469697, PMID:16469694, PMID:16527743, PMID:16651654, PMID:16648367, PMID:16824920, PMID:16878125, PMID:16924116, PMID:16949328, PMID:17181776, PMID:17965055, PMID:17964287, PMID:17949979, PMID:18303047, PMID:18723879, PMID:18976913, PMID:19121105, PMID:17637669, PMID:19126870, PMID:19783734, PMID:19779546, PMID:19825651, PMID:20179140, PMID:20333248, PMID:20406451, PMID:21240189, PMID:21282328, PMID:21307831, PMID:21518889, PMID:21617372, PMID:22519754, PMID:22855791, PMID:23064319, PMID:23146178, PMID:23506837, PMID:24339783, PMID:25569774, locus:2196110; locus_type=protein_coding
AT1G08805.1	chr1:000551002	0.0	C/551002-551636	AT1G08805.1 transcript_region AT1G08805 ID=AT1G08805.1; Parent=AT1G08805; computational_description=novel transcribed region; Name=AT1G08805.1; locus_type=novel_transcribed_region
AT1G04127.1	chr1:000551289	0.0	C/551289-551529	AT1G04127.1 lnc_RNA AT1G04127 ID=AT1G04127.1; Parent=AT1G04127; Name=AT1G04127.1; locus_type=long_noncoding_rna
AT1G02590.1	chr1:000552138	0.0	C/552138-552182,552275-552373,552456-552506,552687-552761	AT1G02590.1 CDS AT1G02590 ID=AT1G02590.1; Parent=AT1G02590; Name=AT1G02590.1; Note=Aldehyde oxidase/xanthine dehydrogenase%2C molybdopterin binding protein; conf_class=7; computational_description=Aldehyde oxidase/xanthine dehydrogenase%2C molybdopterin binding protein%3B FUNCTIONS IN: oxidoreductase activity%2C aldehyde oxidase activity%3B INVOLVED IN: oxidation reduction%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Aldehyde oxidase/xanthine dehydrogenase%2C molybdopterin binding (InterPro:IPR008274)%3B BEST Arabidopsis thaliana protein match is: aldehyde oxidase 4 (TAIR:AT1G04580.1)%3B Has 1946 Blast hits to 1943 proteins in 514 species: Archae - 0%3B Bacteria - 697%3B Metazoa - 537%3B Fungi - 88%3B Plants - 177%3B Viruses - 0%3B Other Eukaryotes - 447 (source: NCBI BLink).; conf_rating=**; Dbxref=locus:2196095; locus_type=protein_coding
AT1G02600.1	chr1:000552640	0.0	W/552640-552711	AT1G02600.1 tRNA AT1G02600 ID=AT1G02600.1; Parent=AT1G02600; Note=tRNA-His; computational_description=tRNA-His (anticodon: GTG); Dbxref=PMID:8980477, PMID:23066098, PMID:8980477, locus:3691869; Name=AT1G02600.1; locus_type=pre_trna
AT1G02610.1	chr1:000553181	0.0	C/553181-553261,553395-553490,553600-553677,554472-554613,554796-554863,555572-555643,555726-555854	AT1G02610.1 CDS AT1G02610 ID=AT1G02610.1; Parent=AT1G02610; Name=AT1G02610.1; Note=RING/FYVE/PHD zinc finger superfamily protein; conf_class=4; computational_description=RING/FYVE/PHD zinc finger superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3675 (InterPro:IPR022143)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%2C Zinc finger%2C RING-CH-type (InterPro:IPR011016)%3B BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT4G02075.1)%3B Has 1637 Blast hits to 1605 proteins in 173 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 761%3B Fungi - 107%3B Plants - 616%3B Viruses - 18%3B Other Eukaryotes - 135 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:20736450, PMID:24377444, locus:2196085; locus_type=protein_coding
AT1G02610.3	chr1:000553181	0.0	C/553181-553261,553395-553490,553600-553677,554472-554613,554796-554863,555024-555026	AT1G02610.3 CDS AT1G02610 ID=AT1G02610.3; Parent=AT1G02610; Name=AT1G02610.3; Note=RING/FYVE/PHD zinc finger superfamily protein; computational_description=RING/FYVE/PHD zinc finger superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3675 (InterPro:IPR022143)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%2C Zinc finger%2C RING-CH-type (InterPro:IPR011016)%3B BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT4G02075.1)%3B Has 1637 Blast hits to 1605 proteins in 173 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 761%3B Fungi - 107%3B Plants - 616%3B Viruses - 18%3B Other Eukaryotes - 135 (source: NCBI BLink).; Dbxref=PMID:20736450, PMID:24377444, locus:2196085; locus_type=protein_coding
AT1G02610.2	chr1:000553368	0.0	C/553368-553490,553600-553677,554472-554613,554796-554863,555572-555643,555726-555854	AT1G02610.2 CDS AT1G02610 ID=AT1G02610.2; Parent=AT1G02610; Name=AT1G02610.2; Note=RING/FYVE/PHD zinc finger superfamily protein; computational_description=RING/FYVE/PHD zinc finger superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3675 (InterPro:IPR022143)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%2C Zinc finger%2C RING-CH-type (InterPro:IPR011016)%3B BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT4G02075.1)%3B Has 1637 Blast hits to 1605 proteins in 173 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 761%3B Fungi - 107%3B Plants - 616%3B Viruses - 18%3B Other Eukaryotes - 135 (source: NCBI BLink).; Dbxref=PMID:20736450, PMID:24377444, locus:2196085; locus_type=protein_coding
AT1G02620.1	chr1:000557092	0.0	W/557092-557108,557317-557668	AT1G02620.1 CDS AT1G02620 ID=AT1G02620.1; Parent=AT1G02620; Name=AT1G02620.1; Note=Ras-related small GTP-binding family protein; conf_class=8; computational_description=Ras-related small GTP-binding family protein%3B FUNCTIONS IN: GTP binding%3B INVOLVED IN: intracellular protein transport%3B LOCATED IN: endomembrane system%2C intracellular%3B CONTAINS InterPro DOMAIN/s: Small GTPase SAR1-type (InterPro:IPR006687)%2C ARF/SAR superfamily (InterPro:IPR006689)%3B BEST Arabidopsis thaliana protein match is: secretion-associated RAS super family 2 (TAIR:AT4G02080.1)%3B Has 4733 Blast hits to 4733 proteins in 333 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2238%3B Fungi - 747%3B Plants - 975%3B Viruses - 0%3B Other Eukaryotes - 773 (source: NCBI BLink).; conf_rating=*; Dbxref=PMID:15236667, PMID:24587212, locus:2196080; locus_type=protein_coding
AT1G04133.1	chr1:000558071	0.0	C/558071-558492	AT1G04133.1 lnc_RNA AT1G04133 ID=AT1G04133.1; Parent=AT1G04133; Name=AT1G04133.1; locus_type=long_noncoding_rna
AT1TE01810	chr1:000559302	0.0	W/559302-559557	AT1TE01810 transposable_element AT1TE01810 ID=AT1TE01810; Name=AT1TE01810; Alias=ATTIRTA1
AT1G04137.1	chr1:000559735	0.0	W/559735-560251	AT1G04137.1 lnc_RNA AT1G04137 ID=AT1G04137.1; Parent=AT1G04137; Name=AT1G04137.1; locus_type=long_noncoding_rna
AT1G02630.1	chr1:000561007	0.0	C/561007-561695,561902-562382	AT1G02630.1 CDS AT1G02630 ID=AT1G02630.1; Parent=AT1G02630; Name=AT1G02630.1; Note=Nucleoside transporter family protein; conf_class=1; computational_description=Nucleoside transporter family protein%3B FUNCTIONS IN: nucleoside transmembrane transporter activity%3B INVOLVED IN: transport%3B LOCATED IN: membrane%3B CONTAINS InterPro DOMAIN/s: Delayed-early response protein/equilibrative nucleoside transporter (InterPro:IPR002259)%3B BEST Arabidopsis thaliana protein match is: equilibrative nucleotide transporter 1 (TAIR:AT1G70330.1)%3B Has 1148 Blast hits to 1019 proteins in 199 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 540%3B Fungi - 114%3B Plants - 205%3B Viruses - 3%3B Other Eukaryotes - 286 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:20032078, locus:2196070; locus_type=protein_coding
AT1G02630.2	chr1:000561007	0.0	C/561007-561320,561453-561695,561902-562382	AT1G02630.2 CDS AT1G02630 ID=AT1G02630.2; Parent=AT1G02630; Name=AT1G02630.2; Note=Nucleoside transporter family protein; conf_class=2; computational_description=Nucleoside transporter family protein%3B FUNCTIONS IN: nucleoside transmembrane transporter activity%3B INVOLVED IN: transport%3B LOCATED IN: membrane%3B CONTAINS InterPro DOMAIN/s: Delayed-early response protein/equilibrative nucleoside transporter (InterPro:IPR002259)%3B BEST Arabidopsis thaliana protein match is: equilibrative nucleotide transporter 1 (TAIR:AT1G70330.1)%3B Has 1148 Blast hits to 1019 proteins in 199 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 540%3B Fungi - 114%3B Plants - 205%3B Viruses - 3%3B Other Eukaryotes - 286 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:20032078, locus:2196070; locus_type=protein_coding
AT1G02640.1	chr1:000564293	0.0	W/564293-564697,565433-565711,565784-565953,566043-566140,566226-567580	AT1G02640.1 CDS AT1G02640 ID=AT1G02640.1; Parent=AT1G02640; Name=AT1G02640.1; Note=beta-xylosidase 2; curator_summary=encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members.; conf_class=2; symbol=BXL2; Alias=ATBXL2, BETA-XYLOSIDASE 2; full_name=beta-xylosidase 2; computational_description=beta-xylosidase 2 (BXL2)%3B FUNCTIONS IN: hydrolase activity%2C hydrolyzing O-glycosyl compounds%3B INVOLVED IN: carbohydrate metabolic process%3B LOCATED IN: plant-type cell wall%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Glycoside hydrolase%2C family 3%2C N-terminal (InterPro:IPR001764)%2C Glycoside hydrolase%2C family 3%2C C-terminal (InterPro:IPR002772)%2C Glycoside hydrolase%2C catalytic core (InterPro:IPR017853)%3B BEST Arabidopsis thaliana protein match is: beta-xylosidase 1 (TAIR:AT5G49360.1)%3B Has 9578 Blast hits to 8300 proteins in 1224 species: Archae - 65%3B Bacteria - 5802%3B Metazoa - 17%3B Fungi - 1614%3B Plants - 527%3B Viruses - 0%3B Other Eukaryotes - 1553 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12609041, PMID:15546358, PMID:15517348, PMID:16258012, PMID:16244138, PMID:16267099, PMID:16367961, PMID:16927204, PMID:17435085, PMID:17937930, PMID:19291320, PMID:20736450, locus:2196060; locus_type=protein_coding
AT1G02650.1	chr1:000568704	0.0	W/568704-568739,568832-569223,569305-570418	AT1G02650.1 CDS AT1G02650 ID=AT1G02650.1; Parent=AT1G02650; Name=AT1G02650.1; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; conf_class=4; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B FUNCTIONS IN: heat shock protein binding%2C binding%3B INVOLVED IN: protein folding%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990)%2C Heat shock protein DnaJ%2C N-terminal (InterPro:IPR001623)%3B BEST Arabidopsis thaliana protein match is: Heat shock protein DnaJ with tetratricopeptide repeat (TAIR:AT4G02100.1)%3B Has 193 Blast hits to 189 proteins in 47 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 37%3B Fungi - 13%3B Plants - 127%3B Viruses - 0%3B Other Eukaryotes - 14 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:20736450, locus:2196050; locus_type=protein_coding
AT1G02650.2	chr1:000568805	0.0	W/568805-569223,569305-570418	AT1G02650.2 CDS AT1G02650 ID=AT1G02650.2; Parent=AT1G02650; Name=AT1G02650.2; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B FUNCTIONS IN: heat shock protein binding%2C binding%3B INVOLVED IN: protein folding%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990)%2C Heat shock protein DnaJ%2C N-terminal (InterPro:IPR001623)%3B BEST Arabidopsis thaliana protein match is: Heat shock protein DnaJ with tetratricopeptide repeat (TAIR:AT4G02100.1)%3B Has 193 Blast hits to 189 proteins in 47 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 37%3B Fungi - 13%3B Plants - 127%3B Viruses - 0%3B Other Eukaryotes - 14 (source: NCBI BLink).; Dbxref=PMID:20736450, locus:2196050; locus_type=protein_coding
AT1G02660.1	chr1:000572187	0.0	C/572187-572759,572836-573252,573338-573397,573489-573953,574120-574746	AT1G02660.1 CDS AT1G02660 ID=AT1G02660.1; Parent=AT1G02660; Name=AT1G02660.1; Note=alpha/beta-Hydrolases superfamily protein; conf_class=1; computational_description=alpha/beta-Hydrolases superfamily protein%3B FUNCTIONS IN: triglyceride lipase activity%3B INVOLVED IN: lipid metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Lipase%2C class 3 (InterPro:IPR002921)%3B BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G62590.1)%3B Has 747 Blast hits to 737 proteins in 148 species: Archae - 0%3B Bacteria - 27%3B Metazoa - 209%3B Fungi - 146%3B Plants - 175%3B Viruses - 15%3B Other Eukaryotes - 175 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12810710, PMID:15720654, PMID:15890746, PMID:17217462, PMID:17408486, PMID:18070919, PMID:18684332, PMID:18775970, PMID:23505340, locus:2196045; locus_type=protein_coding
AT1G02670.1	chr1:000576046	0.0	W/576046-576145,576548-576613,576850-576912,576994-577592,577784-577941,577979-578079,578181-578244,578546-578620,578722-578791,578895-579017,579196-579312,579421-579525,579647-579799,579879-579967,580050-580130,580227-580299	AT1G02670.1 CDS AT1G02670 ID=AT1G02670.1; Parent=AT1G02670; Name=AT1G02670.1; Note=P-loop containing nucleoside triphosphate hydrolases superfamily protein; conf_class=6; computational_description=P-loop containing nucleoside triphosphate hydrolases superfamily protein%3B FUNCTIONS IN: helicase activity%2C DNA binding%2C ATP binding%2C nucleic acid binding%3B INVOLVED IN: DNA repair%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 7 plant structures%3B EXPRESSED DURING: F mature embryo stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: DEAD-like helicase%2C N-terminal (InterPro:IPR014001)%2C DNA/RNA helicase%2C C-terminal (InterPro:IPR001650)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain (InterPro:IPR014021)%2C SNF2-related (InterPro:IPR000330)%3B BEST Arabidopsis thaliana protein match is: Helicase protein with RING/U-box domain (TAIR:AT1G05120.1)%3B Has 20658 Blast hits to 14879 proteins in 1788 species: Archae - 141%3B Bacteria - 6646%3B Metazoa - 3824%3B Fungi - 4666%3B Plants - 1875%3B Viruses - 121%3B Other Eukaryotes - 3385 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:15890746, PMID:16489130, PMID:17227549, locus:2196115; locus_type=protein_coding
AT1G02670.2	chr1:000576562	0.0	W/576562-576613,576850-577592,577784-577906,577979-578052,578181-578244,578332-578451,578535-578620,578722-578791,578895-579017,579196-579312,579421-579525,579647-579799,579879-579980	AT1G02670.2 CDS AT1G02670 ID=AT1G02670.2; Parent=AT1G02670; Name=AT1G02670.2; Note=P-loop containing nucleoside triphosphate hydrolases superfamily protein; computational_description=P-loop containing nucleoside triphosphate hydrolases superfamily protein%3B FUNCTIONS IN: helicase activity%2C DNA binding%2C ATP binding%2C nucleic acid binding%3B INVOLVED IN: DNA repair%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 7 plant structures%3B EXPRESSED DURING: F mature embryo stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: DEAD-like helicase%2C N-terminal (InterPro:IPR014001)%2C DNA/RNA helicase%2C C-terminal (InterPro:IPR001650)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain (InterPro:IPR014021)%2C SNF2-related (InterPro:IPR000330)%3B BEST Arabidopsis thaliana protein match is: Helicase protein with RING/U-box domain (TAIR:AT1G05120.1)%3B Has 20658 Blast hits to 14879 proteins in 1788 species: Archae - 141%3B Bacteria - 6646%3B Metazoa - 3824%3B Fungi - 4666%3B Plants - 1875%3B Viruses - 121%3B Other Eukaryotes - 3385 (source: NCBI BLink).; Dbxref=PMID:15890746, PMID:16489130, PMID:17227549, locus:2196115; locus_type=protein_coding
AT1G02670.3	chr1:000576562	0.0	W/576562-576613,576850-577592,577784-577906,577979-578052,578181-578244,578332-578451,578535-578620,578722-578791,578895-579017,579196-579312,579421-579525,579647-579799,579879-579967,580050-580130,580227-580299	AT1G02670.3 CDS AT1G02670 ID=AT1G02670.3; Parent=AT1G02670; Name=AT1G02670.3; Note=P-loop containing nucleoside triphosphate hydrolases superfamily protein; computational_description=P-loop containing nucleoside triphosphate hydrolases superfamily protein%3B FUNCTIONS IN: helicase activity%2C DNA binding%2C ATP binding%2C nucleic acid binding%3B INVOLVED IN: DNA repair%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 7 plant structures%3B EXPRESSED DURING: F mature embryo stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: DEAD-like helicase%2C N-terminal (InterPro:IPR014001)%2C DNA/RNA helicase%2C C-terminal (InterPro:IPR001650)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain (InterPro:IPR014021)%2C SNF2-related (InterPro:IPR000330)%3B BEST Arabidopsis thaliana protein match is: Helicase protein with RING/U-box domain (TAIR:AT1G05120.1)%3B Has 20658 Blast hits to 14879 proteins in 1788 species: Archae - 141%3B Bacteria - 6646%3B Metazoa - 3824%3B Fungi - 4666%3B Plants - 1875%3B Viruses - 121%3B Other Eukaryotes - 3385 (source: NCBI BLink).; Dbxref=PMID:15890746, PMID:16489130, PMID:17227549, locus:2196115; locus_type=protein_coding
AT1G02670.4	chr1:000576562	0.0	W/576562-576613,576850-577592,577784-577906,577979-578052,578181-578244,578332-578451,578535-578620,578722-578791,578895-579017,579196-579327	AT1G02670.4 CDS AT1G02670 ID=AT1G02670.4; Parent=AT1G02670; Name=AT1G02670.4; Note=P-loop containing nucleoside triphosphate hydrolases superfamily protein; computational_description=P-loop containing nucleoside triphosphate hydrolases superfamily protein%3B FUNCTIONS IN: helicase activity%2C DNA binding%2C ATP binding%2C nucleic acid binding%3B INVOLVED IN: DNA repair%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 7 plant structures%3B EXPRESSED DURING: F mature embryo stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: DEAD-like helicase%2C N-terminal (InterPro:IPR014001)%2C DNA/RNA helicase%2C C-terminal (InterPro:IPR001650)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain (InterPro:IPR014021)%2C SNF2-related (InterPro:IPR000330)%3B BEST Arabidopsis thaliana protein match is: Helicase protein with RING/U-box domain (TAIR:AT1G05120.1)%3B Has 20658 Blast hits to 14879 proteins in 1788 species: Archae - 141%3B Bacteria - 6646%3B Metazoa - 3824%3B Fungi - 4666%3B Plants - 1875%3B Viruses - 121%3B Other Eukaryotes - 3385 (source: NCBI BLink).; Dbxref=PMID:15890746, PMID:16489130, PMID:17227549, locus:2196115; locus_type=protein_coding
AT1G02670.5	chr1:000576562	0.0	W/576562-576613,576850-576912,576994-577592,577784-577906,577979-578052,578181-578244,578332-578451,578535-578620,578722-578791,578895-579017,579196-579312,579421-579525,579647-579799,579879-579980	AT1G02670.5 CDS AT1G02670 ID=AT1G02670.5; Parent=AT1G02670; Name=AT1G02670.5; Note=P-loop containing nucleoside triphosphate hydrolases superfamily protein; computational_description=P-loop containing nucleoside triphosphate hydrolases superfamily protein%3B FUNCTIONS IN: helicase activity%2C DNA binding%2C ATP binding%2C nucleic acid binding%3B INVOLVED IN: DNA repair%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 7 plant structures%3B EXPRESSED DURING: F mature embryo stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: DEAD-like helicase%2C N-terminal (InterPro:IPR014001)%2C DNA/RNA helicase%2C C-terminal (InterPro:IPR001650)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain (InterPro:IPR014021)%2C SNF2-related (InterPro:IPR000330)%3B BEST Arabidopsis thaliana protein match is: Helicase protein with RING/U-box domain (TAIR:AT1G05120.1)%3B Has 20658 Blast hits to 14879 proteins in 1788 species: Archae - 141%3B Bacteria - 6646%3B Metazoa - 3824%3B Fungi - 4666%3B Plants - 1875%3B Viruses - 121%3B Other Eukaryotes - 3385 (source: NCBI BLink).; Dbxref=PMID:15890746, PMID:16489130, PMID:17227549, locus:2196115; locus_type=protein_coding
AT1G02670.6	chr1:000576562	0.0	W/576562-576613,576850-576912,576994-577592,577784-577906,577979-578052,578181-578244,578332-578451,578535-578620,578722-578791,578895-579017,579196-579312,579421-579525,579647-579799,579879-579967,580050-580130,580227-580299	AT1G02670.6 CDS AT1G02670 ID=AT1G02670.6; Parent=AT1G02670; Name=AT1G02670.6; Note=P-loop containing nucleoside triphosphate hydrolases superfamily protein; computational_description=P-loop containing nucleoside triphosphate hydrolases superfamily protein%3B FUNCTIONS IN: helicase activity%2C DNA binding%2C ATP binding%2C nucleic acid binding%3B INVOLVED IN: DNA repair%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 7 plant structures%3B EXPRESSED DURING: F mature embryo stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: DEAD-like helicase%2C N-terminal (InterPro:IPR014001)%2C DNA/RNA helicase%2C C-terminal (InterPro:IPR001650)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain (InterPro:IPR014021)%2C SNF2-related (InterPro:IPR000330)%3B BEST Arabidopsis thaliana protein match is: Helicase protein with RING/U-box domain (TAIR:AT1G05120.1)%3B Has 20658 Blast hits to 14879 proteins in 1788 species: Archae - 141%3B Bacteria - 6646%3B Metazoa - 3824%3B Fungi - 4666%3B Plants - 1875%3B Viruses - 121%3B Other Eukaryotes - 3385 (source: NCBI BLink).; Dbxref=PMID:15890746, PMID:16489130, PMID:17227549, locus:2196115; locus_type=protein_coding
AT1G02670.7	chr1:000576562	0.0	W/576562-576613,576850-577592,577784-577941,577979-578079,578181-578244,578546-578620,578722-578791,578895-579017,579196-579312,579421-579525,579647-579799,579879-579967,580050-580130,580227-580299	AT1G02670.7 CDS AT1G02670 ID=AT1G02670.7; Parent=AT1G02670; Name=AT1G02670.7; Note=P-loop containing nucleoside triphosphate hydrolases superfamily protein; computational_description=P-loop containing nucleoside triphosphate hydrolases superfamily protein%3B FUNCTIONS IN: helicase activity%2C DNA binding%2C ATP binding%2C nucleic acid binding%3B INVOLVED IN: DNA repair%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 7 plant structures%3B EXPRESSED DURING: F mature embryo stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: DEAD-like helicase%2C N-terminal (InterPro:IPR014001)%2C DNA/RNA helicase%2C C-terminal (InterPro:IPR001650)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain (InterPro:IPR014021)%2C SNF2-related (InterPro:IPR000330)%3B BEST Arabidopsis thaliana protein match is: Helicase protein with RING/U-box domain (TAIR:AT1G05120.1)%3B Has 20658 Blast hits to 14879 proteins in 1788 species: Archae - 141%3B Bacteria - 6646%3B Metazoa - 3824%3B Fungi - 4666%3B Plants - 1875%3B Viruses - 121%3B Other Eukaryotes - 3385 (source: NCBI BLink).; Dbxref=PMID:15890746, PMID:16489130, PMID:17227549, locus:2196115; locus_type=protein_coding
AT1G02680.1	chr1:000581084	0.0	W/581084-581186,581278-581315,581497-581556,581644-581718,581815-581919	AT1G02680.1 CDS AT1G02680 ID=AT1G02680.1; Parent=AT1G02680; Name=AT1G02680.1; Note=TBP-associated factor 13; curator_summary=Encodes a TBP-Associated Factor (TAF) that functions together with PRC2 in transcriptional regulation during seed development.; conf_class=2; symbol=TAF13; full_name=TBP-associated factor 13; computational_description=TBP-associated factor 13 (TAF13)%3B FUNCTIONS IN: RNA polymerase II transcription factor activity%2C DNA binding%3B INVOLVED IN: transcription initiation%2C transcription from RNA polymerase II promoter%3B LOCATED IN: transcription factor complex%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Transcription initiation factor IID%2C 18kDa subunit (InterPro:IPR003195)%2C Histone-fold (InterPro:IPR009072)%3B Has 554 Blast hits to 554 proteins in 176 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 207%3B Fungi - 284%3B Plants - 44%3B Viruses - 2%3B Other Eukaryotes - 17 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:17340043, PMID:17526916, PMID:15527982, PMID:23506837, PMID:24023856, locus:2196040; locus_type=protein_coding
AT1G02681.1	chr1:000582364	0.0	W/582364-582985	AT1G02681.1 pseudogenic_transcript AT1G02681 ID=AT1G02681.1; Parent=AT1G02681; Name=AT1G02681.1; curator_summary=Pseudogene of AT4G02160; Note=pseudogene; Dbxref=locus:5019474603; computational_description=pseudogene of cotton fiber protein; locus_type=pseudogene
AT1G04143.1	chr1:000583471	0.0	C/583471-583860	AT1G04143.1 lnc_RNA AT1G04143 ID=AT1G04143.1; Parent=AT1G04143; Name=AT1G04143.1; locus_type=long_noncoding_rna
AT1G02690.1	chr1:000584397	0.0	W/584397-584618,584860-584956,585053-585144,585237-585368,585500-585685,585779-585942,586023-586101,586192-586320,586439-586566,586649-587036	AT1G02690.1 CDS AT1G02690 ID=AT1G02690.1; Parent=AT1G02690; Name=AT1G02690.1; Note=importin alpha isoform 6; curator_summary=Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.; conf_class=2; symbol=IMPA-6; full_name=importin alpha isoform 6; computational_description=importin alpha isoform 6 (IMPA-6)%3B FUNCTIONS IN: protein transporter activity%2C binding%3B INVOLVED IN: intracellular protein transport%2C protein import into nucleus%3B LOCATED IN: nucleus%2C nuclear pore%2C cytoplasm%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Importin-alpha-like%2C importin-beta-binding domain (InterPro:IPR002652)%2C Armadillo-like helical (InterPro:IPR011989)%2C Armadillo (InterPro:IPR000225)%2C Armadillo-type fold (InterPro:IPR016024)%3B BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT4G02150.1)%3B Has 4537 Blast hits to 3341 proteins in 295 species: Archae - 4%3B Bacteria - 37%3B Metazoa - 1783%3B Fungi - 593%3B Plants - 1355%3B Viruses - 0%3B Other Eukaryotes - 765 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12946625, PMID:17675552, PMID:18836040, PMID:20736450, PMID:23027878, locus:2196140; locus_type=protein_coding
AT1G02690.2	chr1:000584397	0.0	W/584397-584618,584860-584956,585053-585144,585237-585368,585500-585685,585776-585942,586023-586101,586192-586320,586439-586566,586649-587036	AT1G02690.2 CDS AT1G02690 ID=AT1G02690.2; Parent=AT1G02690; Name=AT1G02690.2; Note=importin alpha isoform 6; curator_summary=Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.; conf_class=3; symbol=IMPA-6; full_name=importin alpha isoform 6; computational_description=importin alpha isoform 6 (IMPA-6)%3B FUNCTIONS IN: protein transporter activity%2C binding%3B INVOLVED IN: intracellular protein transport%2C protein import into nucleus%3B LOCATED IN: nucleus%2C nuclear pore%2C cytoplasm%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Importin-alpha-like%2C importin-beta-binding domain (InterPro:IPR002652)%2C Armadillo-like helical (InterPro:IPR011989)%2C Armadillo (InterPro:IPR000225)%2C Armadillo-type fold (InterPro:IPR016024)%3B BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT4G02150.1)%3B Has 4537 Blast hits to 3341 proteins in 295 species: Archae - 4%3B Bacteria - 37%3B Metazoa - 1783%3B Fungi - 593%3B Plants - 1355%3B Viruses - 0%3B Other Eukaryotes - 765 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12946625, PMID:17675552, PMID:18836040, PMID:20736450, PMID:23027878, locus:2196140; locus_type=protein_coding
AT1TE01900	chr1:000587269	0.0	W/587269-587326	AT1TE01900 transposable_element AT1TE01900 ID=AT1TE01900; Name=AT1TE01900; Alias=ATREP10D
AT1TE01905	chr1:000587327	0.0	W/587327-587409	AT1TE01905 transposable_element AT1TE01905 ID=AT1TE01905; Name=AT1TE01905; Alias=ATREP4
AT1TE01910	chr1:000587410	0.0	C/587410-588054	AT1TE01910 transposable_element AT1TE01910 ID=AT1TE01910; Name=AT1TE01910; Alias=ATREP2
AT1TE01915	chr1:000588055	0.0	W/588055-588182	AT1TE01915 transposable_element AT1TE01915 ID=AT1TE01915; Name=AT1TE01915; Alias=ATREP5
AT1TE01920	chr1:000588183	0.0	W/588183-588231	AT1TE01920 transposable_element AT1TE01920 ID=AT1TE01920; Name=AT1TE01920; Alias=ATREP4
AT1G02700.1	chr1:000588367	0.0	W/588367-588540,588663-589232	AT1G02700.1 CDS AT1G02700 ID=AT1G02700.1; Parent=AT1G02700; Name=AT1G02700.1; Note=GATA transcription factor-like protein; conf_class=2; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: mitochondrion%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02140.1)%3B Has 49 Blast hits to 49 proteins in 21 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 10%3B Fungi - 6%3B Plants - 29%3B Viruses - 0%3B Other Eukaryotes - 4 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2196035; locus_type=protein_coding
AT1G02705.1	chr1:000589584	0.0	W/589584-590003,590401-590406	AT1G02705.1 CDS AT1G02705 ID=AT1G02705.1; Parent=AT1G02705; Name=AT1G02705.1; Note=hypothetical protein; locus_type=protein_coding
AT1G02710.1	chr1:000589706	0.0	C/589706-589996	AT1G02710.1 CDS AT1G02710 ID=AT1G02710.1; Parent=AT1G02710; Name=AT1G02710.1; Note=glycine-rich protein; conf_class=1; computational_description=glycine-rich protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B Has 94175 Blast hits to 22560 proteins in 1554 species: Archae - 109%3B Bacteria - 35702%3B Metazoa - 26912%3B Fungi - 5192%3B Plants - 9321%3B Viruses - 1410%3B Other Eukaryotes - 15529 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:2196090; locus_type=protein_coding
AT1G02720.1	chr1:000592115	0.0	W/592115-593200	AT1G02720.1 CDS AT1G02720 ID=AT1G02720.1; Parent=AT1G02720; Name=AT1G02720.1; Note=galacturonosyltransferase 5; curator_summary=Encodes a protein with putative galacturonosyltransferase activity.; conf_class=2; symbol=GATL5; Alias=AtGATL5; full_name=galacturonosyltransferase 5; computational_description=galacturonosyltransferase 5 (GATL5)%3B FUNCTIONS IN: transferase activity%2C transferring hexosyl groups%2C polygalacturonate 4-alpha-galacturonosyltransferase activity%2C transferase activity%2C transferring glycosyl groups%3B INVOLVED IN: carbohydrate biosynthetic process%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 14 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Glycosyl transferase%2C family 8 (InterPro:IPR002495)%3B BEST Arabidopsis thaliana protein match is: galacturonosyltransferase 6 (TAIR:AT4G02130.3)%3B Has 2014 Blast hits to 2000 proteins in 469 species: Archae - 0%3B Bacteria - 946%3B Metazoa - 269%3B Fungi - 2%3B Plants - 729%3B Viruses - 0%3B Other Eukaryotes - 68 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15010604, PMID:16540543, PMID:21300919, PMID:24092888, PMID:25658798, locus:2024740; locus_type=protein_coding
AT1G02720.2	chr1:000592115	0.0	W/592115-593200	AT1G02720.2 CDS AT1G02720 ID=AT1G02720.2; Parent=AT1G02720; Name=AT1G02720.2; Note=galacturonosyltransferase 5; curator_summary=Encodes a protein with putative galacturonosyltransferase activity.; conf_class=1; symbol=GATL5; Alias=AtGATL5; full_name=galacturonosyltransferase 5; computational_description=galacturonosyltransferase 5 (GATL5)%3B FUNCTIONS IN: transferase activity%2C transferring hexosyl groups%2C polygalacturonate 4-alpha-galacturonosyltransferase activity%2C transferase activity%2C transferring glycosyl groups%3B INVOLVED IN: carbohydrate biosynthetic process%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 14 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Glycosyl transferase%2C family 8 (InterPro:IPR002495)%3B BEST Arabidopsis thaliana protein match is: galacturonosyltransferase 6 (TAIR:AT4G02130.3)%3B Has 2014 Blast hits to 2000 proteins in 469 species: Archae - 0%3B Bacteria - 946%3B Metazoa - 269%3B Fungi - 2%3B Plants - 729%3B Viruses - 0%3B Other Eukaryotes - 68 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15010604, PMID:16540543, PMID:21300919, PMID:24092888, PMID:25658798, locus:2024740; locus_type=protein_coding
AT1G02730.1	chr1:000594697	0.0	C/594697-596478,596572-597382,597521-598473	AT1G02730.1 CDS AT1G02730 ID=AT1G02730.1; Parent=AT1G02730; Name=AT1G02730.1; Note=cellulose synthase-like D5; curator_summary=Encodes a gene similar to cellulose synthase. Knock-out mutant has reduced growth%2C reduced xylan level and reduced xylan synthase activity in stems.; conf_class=2; symbol=CSLD5; Alias=ATCSLD5, cellulose synthase-like D5, SOS6, SALT OVERLY SENSITIVE 6; full_name=cellulose synthase-like D5; computational_description=cellulose synthase-like D5 (CSLD5)%3B CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150)%3B BEST Arabidopsis thaliana protein match is: cellulose synthase-like D3 (TAIR:AT3G03050.1)%3B Has 3375 Blast hits to 3003 proteins in 709 species: Archae - 13%3B Bacteria - 1269%3B Metazoa - 102%3B Fungi - 19%3B Plants - 1879%3B Viruses - 2%3B Other Eukaryotes - 91 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:15235117, PMID:15447652, PMID:17006591, PMID:17172353, PMID:17227549, PMID:17329565, PMID:17892446, PMID:18334669, PMID:18424613, PMID:19269997, PMID:20409003, PMID:21471331, PMID:21904114, PMID:22661983, locus:2024745; locus_type=protein_coding
AT1G02740.1	chr1:000599734	0.0	C/599734-599812,599892-599976,600065-600234,600434-600513,600721-600825,600936-600976,601227-601372,601547-601560,601653-601706,601812-602021	AT1G02740.1 CDS AT1G02740 ID=AT1G02740.1; Parent=AT1G02740; Name=AT1G02740.1; Note=MRG family protein; conf_class=2; Alias=MRG2, MORF related gene 2; computational_description=MRG family protein%3B FUNCTIONS IN: chromatin binding%3B INVOLVED IN: chromatin assembly or disassembly%3B LOCATED IN: chromatin%2C nucleus%3B EXPRESSED IN: 15 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Histone H4 acetyltransferase%2C NuA4 complex%2C Eaf3/MRG15 subunit (InterPro:IPR017398)%2C Tudor-like%2C plant (InterPro:IPR014002)%2C MRG (InterPro:IPR008676)%2C Chromo domain (InterPro:IPR000953)%3B BEST Arabidopsis thaliana protein match is: MRG family protein (TAIR:AT4G37280.1)%3B Has 1083 Blast hits to 947 proteins in 185 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 790%3B Fungi - 163%3B Plants - 70%3B Viruses - 0%3B Other Eukaryotes - 60 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12575993, PMID:25211338, PMID:25183522, locus:2024725; locus_type=protein_coding
AT1G02750.1	chr1:000602673	0.0	W/602673-602754,602980-603125,603601-603678,603775-604134	AT1G02750.1 CDS AT1G02750 ID=AT1G02750.1; Parent=AT1G02750; Name=AT1G02750.1; Note=Drought-responsive family protein; conf_class=3; computational_description=Drought-responsive family protein%3B FUNCTIONS IN: zinc ion binding%3B INVOLVED IN: response to water deprivation%3B LOCATED IN: intracellular%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C C2H2-like (InterPro:IPR015880)%2C Drought induced 19/ RING finger protein 114 (InterPro:IPR008598)%3B BEST Arabidopsis thaliana protein match is: Drought-responsive family protein (TAIR:AT4G02200.1)%3B Has 236 Blast hits to 236 proteins in 21 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2%3B Fungi - 0%3B Plants - 234%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12888517, PMID:16786289, PMID:18218969, PMID:18650403, locus:2196125; locus_type=protein_coding
AT1G02750.2	chr1:000602673	0.0	W/602673-602754,602980-603125,603601-603639,603784-604134	AT1G02750.2 CDS AT1G02750 ID=AT1G02750.2; Parent=AT1G02750; Name=AT1G02750.2; Note=Drought-responsive family protein; conf_class=3; computational_description=Drought-responsive family protein%3B FUNCTIONS IN: zinc ion binding%3B INVOLVED IN: response to water deprivation%3B LOCATED IN: intracellular%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C C2H2-like (InterPro:IPR015880)%2C Drought induced 19/ RING finger protein 114 (InterPro:IPR008598)%3B BEST Arabidopsis thaliana protein match is: Drought-responsive family protein (TAIR:AT4G02200.1)%3B Has 236 Blast hits to 236 proteins in 21 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2%3B Fungi - 0%3B Plants - 234%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12888517, PMID:16786289, PMID:18218969, PMID:18650403, locus:2196125; locus_type=protein_coding
AT1TE01970	chr1:000604400	0.0	W/604400-604453	AT1TE01970 transposable_element AT1TE01970 ID=AT1TE01970; Name=AT1TE01970; Alias=ATLINEIII
AT1G02760.1	chr1:000604402	0.0	W/604402-604474	AT1G02760.1 tRNA AT1G02760 ID=AT1G02760.1; Parent=AT1G02760; Note=tRNA-Lys; computational_description=tRNA-Lys (anticodon: CTT); Dbxref=PMID:8980477, PMID:23066098, PMID:8980477, locus:3688993; Name=AT1G02760.1; locus_type=pre_trna
AT1G02770.1	chr1:000605071	0.0	C/605071-605403,605515-605604,605705-605805,605919-606102,606176-606322,606529-606624	AT1G02770.1 CDS AT1G02770 ID=AT1G02770.1; Parent=AT1G02770; Name=AT1G02770.1; Note=hypothetical protein; conf_class=1; computational_description=Protein of unknown function (DUF626)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626%2C Arabidopsis thaliana (InterPro:IPR006462)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF626) (TAIR:AT1G19060.1)%3B Has 209 Blast hits to 208 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 209%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:2024705; locus_type=protein_coding
AT1TE01975	chr1:000606710	0.0	C/606710-607198	AT1TE01975 transposable_element AT1TE01975 ID=AT1TE01975; Name=AT1TE01975; Alias=ATREP4
AT1TE01980	chr1:000607199	0.0	C/607199-607224	AT1TE01980 transposable_element AT1TE01980 ID=AT1TE01980; Name=AT1TE01980; Alias=ATREP4
AT1G02780.1	chr1:000608120	0.0	C/608120-608147,608242-608309,608398-608711,608816-608938,609280-609391	AT1G02780.1 CDS AT1G02780 ID=AT1G02780.1; Parent=AT1G02780; Name=AT1G02780.1; Note=Ribosomal protein L19e family protein; conf_class=2; symbol=emb2386; full_name=embryo defective 2386; computational_description=embryo defective 2386 (emb2386)%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%2C ribosome biogenesis%2C embryo development ending in seed dormancy%3B LOCATED IN: in 6 components%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L19/L19e (InterPro:IPR000196)%2C Ribosomal protein L19/L19e%2C domain 3 (InterPro:IPR015974)%2C Ribosomal protein L19/L19e%2C domain 1 (InterPro:IPR015972)%3B BEST Arabidopsis thaliana protein match is: Ribosomal protein L19e family protein (TAIR:AT3G16780.1)%3B Has 1157 Blast hits to 1157 proteins in 410 species: Archae - 291%3B Bacteria - 0%3B Metazoa - 330%3B Fungi - 173%3B Plants - 159%3B Viruses - 0%3B Other Eukaryotes - 204 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11782485, PMID:17934214, PMID:18650403, PMID:18775970, PMID:22195043, locus:2024695; locus_type=protein_coding
AT1TE01985	chr1:000609513	0.0	W/609513-610347	AT1TE01985 transposable_element AT1TE01985 ID=AT1TE01985; Name=AT1TE01985; Alias=ATREP5
AT1G02790.1	chr1:000610681	0.0	C/610681-610935,611026-611529,611618-611920,612019-612225	AT1G02790.1 CDS AT1G02790 ID=AT1G02790.1; Parent=AT1G02790; Name=AT1G02790.1; Note=polygalacturonase 4; curator_summary=encodes a exopolygalacturonase.; conf_class=2; symbol=PGA4; full_name=polygalacturonase 4; computational_description=polygalacturonase 4 (PGA4)%3B FUNCTIONS IN: polygalacturonase activity%3B INVOLVED IN: carbohydrate metabolic process%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 14 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050)%2C Pectin lyase fold (InterPro:IPR012334)%2C Glycoside hydrolase%2C family 28 (InterPro:IPR000743)%2C Parallel beta-helix repeat (InterPro:IPR006626)%3B BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G07830.1)%3B Has 4155 Blast hits to 4140 proteins in 501 species: Archae - 6%3B Bacteria - 1251%3B Metazoa - 14%3B Fungi - 1275%3B Plants - 1482%3B Viruses - 0%3B Other Eukaryotes - 127 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10721737, PMID:10485285, PMID:12805594, PMID:15694452, PMID:15860015, PMID:16247729, PMID:17010199, PMID:18775970, PMID:23056537, PMID:23252839, locus:2024680; locus_type=protein_coding
AT1G02800.1	chr1:000613386	0.0	C/613386-613706,613994-614157,614240-614345,614449-614610,614722-614814,614989-615189,615277-615483,615852-616103	AT1G02800.1 CDS AT1G02800 ID=AT1G02800.1; Parent=AT1G02800; Name=AT1G02800.1; Note=cellulase 2; curator_summary=Encodes a protein with similarity to endo-1%2C4-b-glucanases and is a member of Glycoside Hydrolase Family 9. CEL2 is induced by nemotodes and is expressed in syncitia induced by Heterodera schachtii.May be involved in the development and function of syncitia.; conf_class=1; symbol=CEL2; Alias=ATCEL2, cellulase 2; full_name=cellulase 2; computational_description=cellulase 2 (CEL2)%3B FUNCTIONS IN: cellulase activity%2C hydrolase activity%2C hydrolyzing O-glycosyl compounds%3B INVOLVED IN: response to nematode%2C pattern specification process%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 11 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341)%2C Glycoside hydrolase%2C family 9%2C active site (InterPro:IPR018221)%2C Six-hairpin glycosidase-like (InterPro:IPR008928)%2C Glycoside hydrolase%2C family 9 (InterPro:IPR001701)%3B BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9B13 (TAIR:AT4G02290.1)%3B Has 1817 Blast hits to 1800 proteins in 268 species: Archae - 2%3B Bacteria - 651%3B Metazoa - 181%3B Fungi - 17%3B Plants - 925%3B Viruses - 0%3B Other Eukaryotes - 41 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:10074717, PMID:14576160, PMID:15170254, PMID:17409064, PMID:18069944, locus:2024670; locus_type=protein_coding
AT1G02810.1	chr1:000618284	0.0	W/618284-619328,619639-620333	AT1G02810.1 CDS AT1G02810 ID=AT1G02810.1; Parent=AT1G02810; Name=AT1G02810.1; Note=Plant invertase/pectin methylesterase inhibitor superfamily; conf_class=1; computational_description=Plant invertase/pectin methylesterase inhibitor superfamily%3B FUNCTIONS IN: enzyme inhibitor activity%2C pectinesterase activity%3B INVOLVED IN: cell wall modification%3B LOCATED IN: endomembrane system%2C cell wall%2C plant-type cell wall%3B EXPRESSED IN: 14 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Pectinesterase%2C active site (InterPro:IPR018040)%2C Pectin lyase fold/virulence factor (InterPro:IPR011050)%2C Pectinesterase%2C catalytic (InterPro:IPR000070)%2C Pectinesterase inhibitor (InterPro:IPR006501)%2C Pectin lyase fold (InterPro:IPR012334)%3B BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT4G02330.1)%3B Has 2709 Blast hits to 2654 proteins in 327 species: Archae - 6%3B Bacteria - 603%3B Metazoa - 3%3B Fungi - 204%3B Plants - 1867%3B Viruses - 0%3B Other Eukaryotes - 26 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12468722, PMID:16622707, PMID:16920880, PMID:17337630, locus:2024750; locus_type=protein_coding
AT1G02813.1	chr1:000620773	0.0	W/620773-621222	AT1G02813.1 CDS AT1G02813 ID=AT1G02813.1; Parent=AT1G02813; Name=AT1G02813.1; Note=pectinesterase (Protein of unknown function%2C DUF538); conf_class=1; computational_description=Protein of unknown function%2C DUF538%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: leaf whorl%2C cauline leaf%2C sepal%2C flower%2C seed%3B EXPRESSED DURING: F mature embryo stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function%2C DUF538 (TAIR:AT4G02360.1)%3B Has 501 Blast hits to 500 proteins in 21 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 500%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15681452, PMID:20736450, locus:505006095; locus_type=protein_coding
AT1G02816.1	chr1:000621637	0.0	W/621637-622137	AT1G02816.1 CDS AT1G02816 ID=AT1G02816.1; Parent=AT1G02816; Name=AT1G02816.1; Note=pectinesterase (Protein of unknown function%2C DUF538); conf_class=1; computational_description=Protein of unknown function%2C DUF538%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%2C vacuole%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function%2C DUF538 (TAIR:AT4G02370.1)%3B Has 559 Blast hits to 558 proteins in 20 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 558%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:18775970, locus:505006096; locus_type=protein_coding
AT1G02820.1	chr1:000623933	0.0	C/623933-624134,624231-624304	AT1G02820.1 CDS AT1G02820 ID=AT1G02820.1; Parent=AT1G02820; Name=AT1G02820.1; Note=Late embryogenesis abundant 3 (LEA3) family protein; conf_class=2; symbol=LEA3; Alias=AtLEA3; full_name=late embryogenesis abundant 3; computational_description=Late embryogenesis abundant 3 (LEA3) family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: embryo development%2C response to stress%3B EXPRESSED IN: 16 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein%2C group 3 (InterPro:IPR004926)%3B BEST Arabidopsis thaliana protein match is: senescence-associated gene 21 (TAIR:AT4G02380.1)%3B Has 144 Blast hits to 139 proteins in 33 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 144%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15086800, PMID:16299181, PMID:17092320, PMID:18318901, PMID:18452589, PMID:18650403, PMID:18775970, PMID:20226671, PMID:22127738, PMID:23791732, PMID:25005920, locus:2024735; locus_type=protein_coding
AT1G02830.1	chr1:000625145	0.0	C/625145-625292,625373-625608	AT1G02830.1 CDS AT1G02830 ID=AT1G02830.1; Parent=AT1G02830; Name=AT1G02830.1; Note=Ribosomal L22e protein family; conf_class=1; computational_description=Ribosomal L22e protein family%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%3B LOCATED IN: ribosome%2C cytosolic large ribosomal subunit%3B EXPRESSED IN: shoot apex%2C flower%3B EXPRESSED DURING: petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L22e (InterPro:IPR002671)%3B BEST Arabidopsis thaliana protein match is: Ribosomal L22e protein family (TAIR:AT3G05560.3)%3B Has 683 Blast hits to 683 proteins in 235 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 333%3B Fungi - 136%3B Plants - 114%3B Viruses - 0%3B Other Eukaryotes - 100 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11598216, PMID:17934214, locus:2024715; locus_type=protein_coding
AT1G02840.1	chr1:000626918	0.0	W/626918-627004,627100-627165,627308-627382,627482-627614,627701-627747,627835-627892,627970-628019,628112-628168,628246-628469,629288-629321,629418-629494,629580-629583	AT1G02840.1 CDS AT1G02840 ID=AT1G02840.1; Parent=AT1G02840; Name=AT1G02840.1; Note=RNA-binding (RRM/RBD/RNP motifs) family protein; curator_summary=SR34/SR1 is a plant homologue of the human general/alternative splicing factor SF2/ASF. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010%2C 22:2926.; conf_class=2; symbol=SR34; Alias=ATSRP34, At-SR34, Serine/Arginine-Rich Protein Splicing Factor 34, SR1, SRP34; full_name=Serine/Arginine-Rich Protein Splicing Factor 34; computational_description=SR1%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B LOCATED IN: interchromatin granule%2C nuclear speck%2C nucleus%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G02430.2)%3B Has 35131 Blast hits to 21345 proteins in 1053 species: Archae - 12%3B Bacteria - 1352%3B Metazoa - 20795%3B Fungi - 3692%3B Plants - 3807%3B Viruses - 567%3B Other Eukaryotes - 4906 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10809003, PMID:10652154, PMID:10215626, PMID:12176998, PMID:15034145, PMID:15133128, PMID:15166240, PMID:15686520, PMID:16024589, PMID:16497658, PMID:18775970, PMID:16895966, PMID:20884799, PMID:21935421, PMID:25268622, locus:2024770; locus_type=protein_coding
AT1G02840.2	chr1:000626918	0.0	W/626918-627004,627100-627165,627308-627382,627482-627614,627701-627747,627835-627892,627970-628019,628112-628168,628246-628469,628935-628995	AT1G02840.2 CDS AT1G02840 ID=AT1G02840.2; Parent=AT1G02840; Name=AT1G02840.2; Note=RNA-binding (RRM/RBD/RNP motifs) family protein; curator_summary=SR34/SR1 is a plant homologue of the human general/alternative splicing factor SF2/ASF. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010%2C 22:2926.; conf_class=2; symbol=SR34; Alias=ATSRP34, At-SR34, Serine/Arginine-Rich Protein Splicing Factor 34, SR1, SRP34; full_name=Serine/Arginine-Rich Protein Splicing Factor 34; computational_description=SR1%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B LOCATED IN: interchromatin granule%2C nuclear speck%2C nucleus%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G02430.2)%3B Has 35131 Blast hits to 21345 proteins in 1053 species: Archae - 12%3B Bacteria - 1352%3B Metazoa - 20795%3B Fungi - 3692%3B Plants - 3807%3B Viruses - 567%3B Other Eukaryotes - 4906 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10809003, PMID:10652154, PMID:10215626, PMID:12176998, PMID:15034145, PMID:15133128, PMID:15166240, PMID:15686520, PMID:16024589, PMID:16497658, PMID:18775970, PMID:16895966, PMID:20884799, PMID:21935421, PMID:25268622, locus:2024770; locus_type=protein_coding
AT1G02840.3	chr1:000626918	0.0	W/626918-627004,627100-627165,627308-627382,627482-627614,627701-627747,627835-627892,627970-628019,628112-628168,628246-628469,628777-628798	AT1G02840.3 CDS AT1G02840 ID=AT1G02840.3; Parent=AT1G02840; Name=AT1G02840.3; Note=RNA-binding (RRM/RBD/RNP motifs) family protein; curator_summary=SR34/SR1 is a plant homologue of the human general/alternative splicing factor SF2/ASF. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010%2C 22:2926.; conf_class=3; symbol=SR34; Alias=ATSRP34, At-SR34, Serine/Arginine-Rich Protein Splicing Factor 34, SR1, SRP34; full_name=Serine/Arginine-Rich Protein Splicing Factor 34; computational_description=SR1%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B LOCATED IN: interchromatin granule%2C nuclear speck%2C nucleus%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G02430.2)%3B Has 35131 Blast hits to 21345 proteins in 1053 species: Archae - 12%3B Bacteria - 1352%3B Metazoa - 20795%3B Fungi - 3692%3B Plants - 3807%3B Viruses - 567%3B Other Eukaryotes - 4906 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10809003, PMID:10652154, PMID:10215626, PMID:12176998, PMID:15034145, PMID:15133128, PMID:15166240, PMID:15686520, PMID:16024589, PMID:16497658, PMID:18775970, PMID:16895966, PMID:20884799, PMID:21935421, PMID:25268622, locus:2024770; locus_type=protein_coding
AT1G02840.4	chr1:000626918	0.0	W/626918-627004,627100-627165,627308-627382,627482-627614,627701-627747,627835-627892,627970-628019,628112-628168,628246-628469,628777-628798	AT1G02840.4 CDS AT1G02840 ID=AT1G02840.4; Parent=AT1G02840; Name=AT1G02840.4; Note=RNA-binding (RRM/RBD/RNP motifs) family protein; symbol=SR34; Alias=ATSRP34, At-SR34, Serine/Arginine-Rich Protein Splicing Factor 34, SR1, SRP34; full_name=Serine/Arginine-Rich Protein Splicing Factor 34; Dbxref=PMID:10809003, PMID:10652154, PMID:10215626, PMID:12176998, PMID:15034145, PMID:15133128, PMID:15166240, PMID:15686520, PMID:16024589, PMID:16497658, PMID:18775970, PMID:16895966, PMID:20884799, PMID:21935421, PMID:25268622, locus:2024770; curator_summary=SR34/SR1 is a plant homologue of the human general/alternative splicing factor SF2/ASF. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010%2C 22:2926.; computational_description=SR1%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B LOCATED IN: interchromatin granule%2C nuclear speck%2C nucleus%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G02430.2)%3B Has 35131 Blast hits to 21345 proteins in 1053 species: Archae - 12%3B Bacteria - 1352%3B Metazoa - 20795%3B Fungi - 3692%3B Plants - 3807%3B Viruses - 567%3B Other Eukaryotes - 4906 (source: NCBI BLink).; locus_type=protein_coding
AT1G02840.5	chr1:000626918	0.0	W/626918-627004,627100-627165,627308-627382,627482-627614,627701-627747,627835-627892,627970-628019,628112-628168,628246-628469,628777-628798	AT1G02840.5 CDS AT1G02840 ID=AT1G02840.5; Parent=AT1G02840; Name=AT1G02840.5; Note=RNA-binding (RRM/RBD/RNP motifs) family protein; symbol=SR34; Alias=ATSRP34, At-SR34, Serine/Arginine-Rich Protein Splicing Factor 34, SR1, SRP34; full_name=Serine/Arginine-Rich Protein Splicing Factor 34; Dbxref=PMID:10809003, PMID:10652154, PMID:10215626, PMID:12176998, PMID:15034145, PMID:15133128, PMID:15166240, PMID:15686520, PMID:16024589, PMID:16497658, PMID:18775970, PMID:16895966, PMID:20884799, PMID:21935421, PMID:25268622, locus:2024770; curator_summary=SR34/SR1 is a plant homologue of the human general/alternative splicing factor SF2/ASF. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010%2C 22:2926.; computational_description=SR1%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B LOCATED IN: interchromatin granule%2C nuclear speck%2C nucleus%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G02430.2)%3B Has 35131 Blast hits to 21345 proteins in 1053 species: Archae - 12%3B Bacteria - 1352%3B Metazoa - 20795%3B Fungi - 3692%3B Plants - 3807%3B Viruses - 567%3B Other Eukaryotes - 4906 (source: NCBI BLink).; locus_type=protein_coding
AT1G02850.1	chr1:000630569	0.0	W/630569-630703,630832-630895,630978-631033,631104-631179,631265-631336,631431-631518,631603-631858,632009-632043,632128-632348,632421-632449,632528-632615,632716-632806,632884-633085	AT1G02850.1 CDS AT1G02850 ID=AT1G02850.1; Parent=AT1G02850; Name=AT1G02850.1; Note=beta glucosidase 11; conf_class=2; symbol=BGLU11; full_name=beta glucosidase 11; computational_description=beta glucosidase 11 (BGLU11)%3B FUNCTIONS IN: cation binding%2C hydrolase activity%2C hydrolyzing O-glycosyl compounds%2C catalytic activity%3B INVOLVED IN: carbohydrate metabolic process%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Glycoside hydrolase%2C family 1 (InterPro:IPR001360)%2C Glycoside hydrolase%2C family 1%2C active site (InterPro:IPR018120)%2C Glycoside hydrolase%2C catalytic core (InterPro:IPR017853)%2C Glycoside hydrolase%2C subgroup%2C catalytic core (InterPro:IPR013781)%3B BEST Arabidopsis thaliana protein match is: beta glucosidase 2 (TAIR:AT4G22100.1)%3B Has 11304 Blast hits to 10989 proteins in 1473 species: Archae - 140%3B Bacteria - 7804%3B Metazoa - 711%3B Fungi - 201%3B Plants - 1455%3B Viruses - 0%3B Other Eukaryotes - 993 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15341629, PMID:15584951, PMID:15824099, PMID:16489130, PMID:17163880, PMID:18650403, PMID:18753285, PMID:18775970, PMID:15604686, PMID:23682113, locus:2024685; locus_type=protein_coding
AT1G02850.2	chr1:000630569	0.0	W/630569-630703,630832-630895,630978-631033,631104-631179,631265-631336,631431-631518,631603-631858,631928-632043,632128-632348,632421-632449,632528-632615,632716-632806,632884-633085	AT1G02850.2 CDS AT1G02850 ID=AT1G02850.2; Parent=AT1G02850; Name=AT1G02850.2; Note=beta glucosidase 11; conf_class=2; symbol=BGLU11; full_name=beta glucosidase 11; computational_description=beta glucosidase 11 (BGLU11)%3B FUNCTIONS IN: cation binding%2C hydrolase activity%2C hydrolyzing O-glycosyl compounds%2C catalytic activity%3B INVOLVED IN: carbohydrate metabolic process%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Glycoside hydrolase%2C family 1 (InterPro:IPR001360)%2C Glycoside hydrolase%2C family 1%2C active site (InterPro:IPR018120)%2C Glycoside hydrolase%2C catalytic core (InterPro:IPR017853)%2C Glycoside hydrolase%2C subgroup%2C catalytic core (InterPro:IPR013781)%3B BEST Arabidopsis thaliana protein match is: beta glucosidase 2 (TAIR:AT4G22100.1)%3B Has 11304 Blast hits to 10989 proteins in 1473 species: Archae - 140%3B Bacteria - 7804%3B Metazoa - 711%3B Fungi - 201%3B Plants - 1455%3B Viruses - 0%3B Other Eukaryotes - 993 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15341629, PMID:15584951, PMID:15824099, PMID:16489130, PMID:17163880, PMID:18650403, PMID:18753285, PMID:18775970, PMID:15604686, PMID:23682113, locus:2024685; locus_type=protein_coding
AT1G02850.3	chr1:000630569	0.0	W/630569-630703,630832-630895,630978-631033,631104-631179,631265-631336,631431-631518,631603-632043,632128-632348,632421-632449,632528-632653	AT1G02850.3 CDS AT1G02850 ID=AT1G02850.3; Parent=AT1G02850; Name=AT1G02850.3; Note=beta glucosidase 11; conf_class=2; symbol=BGLU11; full_name=beta glucosidase 11; computational_description=beta glucosidase 11 (BGLU11)%3B FUNCTIONS IN: cation binding%2C hydrolase activity%2C hydrolyzing O-glycosyl compounds%2C catalytic activity%3B INVOLVED IN: carbohydrate metabolic process%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Glycoside hydrolase%2C family 1 (InterPro:IPR001360)%2C Glycoside hydrolase%2C family 1%2C active site (InterPro:IPR018120)%2C Glycoside hydrolase%2C catalytic core (InterPro:IPR017853)%2C Glycoside hydrolase%2C subgroup%2C catalytic core (InterPro:IPR013781)%3B BEST Arabidopsis thaliana protein match is: beta glucosidase 2 (TAIR:AT4G22100.1)%3B Has 11304 Blast hits to 10989 proteins in 1473 species: Archae - 140%3B Bacteria - 7804%3B Metazoa - 711%3B Fungi - 201%3B Plants - 1455%3B Viruses - 0%3B Other Eukaryotes - 993 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15341629, PMID:15584951, PMID:15824099, PMID:16489130, PMID:17163880, PMID:18650403, PMID:18753285, PMID:18775970, PMID:15604686, PMID:23682113, locus:2024685; locus_type=protein_coding
AT1G02850.4	chr1:000630569	0.0	W/630569-630703,630832-630895,630978-631033,631104-631179,631265-631336,631431-631518,631603-632043,632128-632348,632421-632449,632528-632615,632716-632806,632881-633085	AT1G02850.4 CDS AT1G02850 ID=AT1G02850.4; Parent=AT1G02850; Name=AT1G02850.4; Note=beta glucosidase 11; conf_class=3; symbol=BGLU11; full_name=beta glucosidase 11; computational_description=beta glucosidase 11 (BGLU11)%3B FUNCTIONS IN: cation binding%2C hydrolase activity%2C hydrolyzing O-glycosyl compounds%2C catalytic activity%3B INVOLVED IN: carbohydrate metabolic process%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Glycoside hydrolase%2C family 1 (InterPro:IPR001360)%2C Glycoside hydrolase%2C family 1%2C active site (InterPro:IPR018120)%2C Glycoside hydrolase%2C catalytic core (InterPro:IPR017853)%2C Glycoside hydrolase%2C subgroup%2C catalytic core (InterPro:IPR013781)%3B BEST Arabidopsis thaliana protein match is: beta glucosidase 2 (TAIR:AT4G22100.1)%3B Has 11304 Blast hits to 10989 proteins in 1473 species: Archae - 140%3B Bacteria - 7804%3B Metazoa - 711%3B Fungi - 201%3B Plants - 1455%3B Viruses - 0%3B Other Eukaryotes - 993 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15341629, PMID:15584951, PMID:15824099, PMID:16489130, PMID:17163880, PMID:18650403, PMID:18753285, PMID:18775970, PMID:15604686, PMID:23682113, locus:2024685; locus_type=protein_coding
AT1G02850.5	chr1:000630569	0.0	W/630569-630703,630832-630895,630978-631033,631104-631179,631265-631336,631431-631518,631603-632043,632128-632348,632421-632449,632528-632615,632716-632806,632884-633085	AT1G02850.5 CDS AT1G02850 ID=AT1G02850.5; Parent=AT1G02850; Name=AT1G02850.5; Note=beta glucosidase 11; conf_class=2; symbol=BGLU11; full_name=beta glucosidase 11; computational_description=beta glucosidase 11 (BGLU11)%3B FUNCTIONS IN: cation binding%2C hydrolase activity%2C hydrolyzing O-glycosyl compounds%2C catalytic activity%3B INVOLVED IN: carbohydrate metabolic process%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Glycoside hydrolase%2C family 1 (InterPro:IPR001360)%2C Glycoside hydrolase%2C family 1%2C active site (InterPro:IPR018120)%2C Glycoside hydrolase%2C catalytic core (InterPro:IPR017853)%2C Glycoside hydrolase%2C subgroup%2C catalytic core (InterPro:IPR013781)%3B BEST Arabidopsis thaliana protein match is: beta glucosidase 2 (TAIR:AT4G22100.1)%3B Has 11304 Blast hits to 10989 proteins in 1473 species: Archae - 140%3B Bacteria - 7804%3B Metazoa - 711%3B Fungi - 201%3B Plants - 1455%3B Viruses - 0%3B Other Eukaryotes - 993 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15341629, PMID:15584951, PMID:15824099, PMID:16489130, PMID:17163880, PMID:18650403, PMID:18753285, PMID:18775970, PMID:15604686, PMID:23682113, locus:2024685; locus_type=protein_coding
AT1TE02060	chr1:000634246	0.0	W/634246-634464	AT1TE02060 transposable_element AT1TE02060 ID=AT1TE02060; Name=AT1TE02060; Alias=RP1_AT
AT1G02860.1	chr1:000635474	0.0	W/635474-635651,635739-635986,636081-636359,636592-636729,636828-636886,636978-637083	AT1G02860.1 CDS AT1G02860 ID=AT1G02860.1; Parent=AT1G02860; Name=AT1G02860.1; Note=SPX (SYG1/Pho81/XPR1) domain-containing protein; curator_summary=Encodes a ubiquitin E3 ligase with RING and SPX domains that is involved in mediating immune responses and mediates degradation of PHT1s at plasma membranes. Targeted by MIR827. Ubiquitinates PHT1%3B3%2C PHT1%3B2%2C PHT1%3B1/AtPT1 and PHT1%3B4/AtPT2.; conf_class=2; symbol=NLA; Alias=BAH1, BENZOIC ACID HYPERSENSITIVE 1; full_name=nitrogen limitation adaptation; computational_description=nitrogen limitation adaptation (NLA)%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type%2C conserved site (InterPro:IPR017907)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C SPX%2C N-terminal (InterPro:IPR004331)%3B BEST Arabidopsis thaliana protein match is: SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related (TAIR:AT2G38920.1)%3B Has 2026 Blast hits to 2013 proteins in 210 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1472%3B Fungi - 138%3B Plants - 261%3B Viruses - 0%3B Other Eukaryotes - 155 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11983057, PMID:15122012, PMID:15644464, PMID:16339806, PMID:17182867, PMID:17355433, PMID:18178671, PMID:18753285, PMID:19854858, PMID:21455488, PMID:24122828, PMID:24474629, locus:2024675; locus_type=protein_coding
AT1G02860.2	chr1:000635474	0.0	W/635474-635651,635739-635986,636081-636359,636592-636729,636828-636886,636984-637083	AT1G02860.2 CDS AT1G02860 ID=AT1G02860.2; Parent=AT1G02860; Name=AT1G02860.2; Note=SPX (SYG1/Pho81/XPR1) domain-containing protein; curator_summary=Encodes a ubiquitin E3 ligase with RING and SPX domains that is involved in mediating immune responses and mediates degradation of PHT1s at plasma membranes. Targeted by MIR827. Ubiquitinates PHT1%3B3%2C PHT1%3B2%2C PHT1%3B1/AtPT1 and PHT1%3B4/AtPT2.; conf_class=3; symbol=NLA; Alias=BAH1, BENZOIC ACID HYPERSENSITIVE 1; full_name=nitrogen limitation adaptation; computational_description=nitrogen limitation adaptation (NLA)%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type%2C conserved site (InterPro:IPR017907)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C SPX%2C N-terminal (InterPro:IPR004331)%3B BEST Arabidopsis thaliana protein match is: SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related (TAIR:AT2G38920.1)%3B Has 2026 Blast hits to 2013 proteins in 210 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1472%3B Fungi - 138%3B Plants - 261%3B Viruses - 0%3B Other Eukaryotes - 155 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11983057, PMID:15122012, PMID:15644464, PMID:16339806, PMID:17182867, PMID:17355433, PMID:18178671, PMID:18753285, PMID:19854858, PMID:21455488, PMID:24122828, PMID:24474629, locus:2024675; locus_type=protein_coding
AT1G02860.3	chr1:000635474	0.0	W/635474-635651,635739-635986,636081-636389	AT1G02860.3 CDS AT1G02860 ID=AT1G02860.3; Parent=AT1G02860; Name=AT1G02860.3; Note=SPX (SYG1/Pho81/XPR1) domain-containing protein; symbol=NLA; Alias=BAH1, BENZOIC ACID HYPERSENSITIVE 1; full_name=nitrogen limitation adaptation; curator_summary=Encodes a ubiquitin E3 ligase with RING and SPX domains that is involved in mediating immune responses and mediates degradation of PHT1s at plasma membranes. Targeted by MIR827. Ubiquitinates PHT1%3B3%2C PHT1%3B2%2C PHT1%3B1/AtPT1 and PHT1%3B4/AtPT2.; computational_description=nitrogen limitation adaptation (NLA)%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type%2C conserved site (InterPro:IPR017907)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C SPX%2C N-terminal (InterPro:IPR004331)%3B BEST Arabidopsis thaliana protein match is: SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related (TAIR:AT2G38920.1)%3B Has 2026 Blast hits to 2013 proteins in 210 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1472%3B Fungi - 138%3B Plants - 261%3B Viruses - 0%3B Other Eukaryotes - 155 (source: NCBI BLink).; Dbxref=PMID:11983057, PMID:15122012, PMID:15644464, PMID:16339806, PMID:17182867, PMID:17355433, PMID:18178671, PMID:18753285, PMID:19854858, PMID:21455488, PMID:24122828, PMID:24474629, locus:2024675; locus_type=protein_coding
AT1G04147.1	chr1:000636337	0.0	C/636337-636614	AT1G04147.1 antisense_lncRNA AT1G04147 ID=AT1G04147.1; Parent=AT1G04147; Name=AT1G04147.1; description=Natural antisense transcript overlaps with AT1G02860; Note=Natural antisense transcript overlaps with AT1G02860; locus_type=antisense_long_noncoding_rna
AT1G02870.1	chr1:000637401	0.0	C/637401-637514,637602-637723,638258-638603	AT1G02870.1 CDS AT1G02870 ID=AT1G02870.1; Parent=AT1G02870; Name=AT1G02870.1; Note=nucleolar-like protein; conf_class=1; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosome biogenesis protein Nop16 (InterPro:IPR019002)%3B Has 104 Blast hits to 104 proteins in 57 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 63%3B Plants - 35%3B Viruses - 0%3B Other Eukaryotes - 6 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15695462, PMID:18315867, PMID:18753285, PMID:21908688, locus:2024665; locus_type=protein_coding
AT1G04153.1	chr1:000637772	0.0	W/637772-638231	AT1G04153.1 antisense_lncRNA AT1G04153 ID=AT1G04153.1; Parent=AT1G04153; Name=AT1G04153.1; description=Natural antisense transcript overlaps with AT1G02870; Note=Natural antisense transcript overlaps with AT1G02870; locus_type=antisense_long_noncoding_rna
AT1TE02070	chr1:000638900	0.0	C/638900-639129	AT1TE02070 transposable_element AT1TE02070 ID=AT1TE02070; Name=AT1TE02070; Alias=ATREP10B
AT1TE02075	chr1:000639130	0.0	W/639130-641133	AT1TE02075 transposable_element AT1TE02075 ID=AT1TE02075; Name=AT1TE02075; Alias=ARNOLDY1
AT1TE02080	chr1:000641277	0.0	W/641277-641420	AT1TE02080 transposable_element AT1TE02080 ID=AT1TE02080; Name=AT1TE02080; Alias=ARNOLDY1
AT1G08815.2	chr1:000641542	0.0	W/641542-642317	AT1G08815.2 transcript_region AT1G08815 ID=AT1G08815.2; Parent=AT1G08815; computational_description=novel transcribed region; Name=AT1G08815.2; locus_type=novel_transcribed_region
AT1G02880.1	chr1:000643063	0.0	C/643063-643208,643305-643554,643644-643745,643877-643972	AT1G02880.1 CDS AT1G02880 ID=AT1G02880.1; Parent=AT1G02880; Name=AT1G02880.1; Note=thiamin pyrophosphokinase1; curator_summary=Encodes a thiamine pyrophosphokinase capable of producing thiamine pyrophosphate from free thiamine.; conf_class=2; symbol=TPK1; full_name=thiamin pyrophosphokinase1; computational_description=thiamin pyrophosphokinase1 (TPK1)%3B FUNCTIONS IN: thiamin diphosphokinase activity%3B INVOLVED IN: thiamin metabolic process%3B LOCATED IN: cytosol%3B EXPRESSED IN: 6 plant structures%3B CONTAINS InterPro DOMAIN/s: Thiamin pyrophosphokinase%2C vitamin B1-binding domain (InterPro:IPR007373)%2C Thiamin pyrophosphokinase (InterPro:IPR006282)%2C Thiamin pyrophosphokinase%2C catalytic domain (InterPro:IPR007371)%3B BEST Arabidopsis thaliana protein match is: thiamin pyrophosphokinase 2 (TAIR:AT2G44750.2)%3B Has 1216 Blast hits to 1216 proteins in 497 species: Archae - 0%3B Bacteria - 615%3B Metazoa - 133%3B Fungi - 131%3B Plants - 88%3B Viruses - 0%3B Other Eukaryotes - 249 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17611796, PMID:18650403, PMID:18753285, locus:2024660; locus_type=protein_coding
AT1G02880.2	chr1:000643063	0.0	C/643063-643208,643305-643554,643644-643745,643877-643949,644160-644256,644350-644476	AT1G02880.2 CDS AT1G02880 ID=AT1G02880.2; Parent=AT1G02880; Name=AT1G02880.2; Note=thiamin pyrophosphokinase1; curator_summary=Encodes a thiamine pyrophosphokinase capable of producing thiamine pyrophosphate from free thiamine.; conf_class=2; symbol=TPK1; full_name=thiamin pyrophosphokinase1; computational_description=thiamin pyrophosphokinase1 (TPK1)%3B FUNCTIONS IN: thiamin diphosphokinase activity%3B INVOLVED IN: thiamin metabolic process%3B LOCATED IN: cytosol%3B EXPRESSED IN: 6 plant structures%3B CONTAINS InterPro DOMAIN/s: Thiamin pyrophosphokinase%2C vitamin B1-binding domain (InterPro:IPR007373)%2C Thiamin pyrophosphokinase (InterPro:IPR006282)%2C Thiamin pyrophosphokinase%2C catalytic domain (InterPro:IPR007371)%3B BEST Arabidopsis thaliana protein match is: thiamin pyrophosphokinase 2 (TAIR:AT2G44750.2)%3B Has 1216 Blast hits to 1216 proteins in 497 species: Archae - 0%3B Bacteria - 615%3B Metazoa - 133%3B Fungi - 131%3B Plants - 88%3B Viruses - 0%3B Other Eukaryotes - 249 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17611796, PMID:18650403, PMID:18753285, locus:2024660; locus_type=protein_coding
AT1G02880.3	chr1:000643063	0.0	C/643063-643208,643305-643554,643644-643745,643877-643949,644160-644256,644350-644485	AT1G02880.3 CDS AT1G02880 ID=AT1G02880.3; Parent=AT1G02880; Name=AT1G02880.3; Note=thiamin pyrophosphokinase1; curator_summary=Encodes a thiamine pyrophosphokinase capable of producing thiamine pyrophosphate from free thiamine.; conf_class=2; symbol=TPK1; full_name=thiamin pyrophosphokinase1; computational_description=thiamin pyrophosphokinase1 (TPK1)%3B FUNCTIONS IN: thiamin diphosphokinase activity%3B INVOLVED IN: thiamin metabolic process%3B LOCATED IN: cytosol%3B EXPRESSED IN: 6 plant structures%3B CONTAINS InterPro DOMAIN/s: Thiamin pyrophosphokinase%2C vitamin B1-binding domain (InterPro:IPR007373)%2C Thiamin pyrophosphokinase (InterPro:IPR006282)%2C Thiamin pyrophosphokinase%2C catalytic domain (InterPro:IPR007371)%3B BEST Arabidopsis thaliana protein match is: thiamin pyrophosphokinase 2 (TAIR:AT2G44750.2)%3B Has 1216 Blast hits to 1216 proteins in 497 species: Archae - 0%3B Bacteria - 615%3B Metazoa - 133%3B Fungi - 131%3B Plants - 88%3B Viruses - 0%3B Other Eukaryotes - 249 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17611796, PMID:18650403, PMID:18753285, locus:2024660; locus_type=protein_coding
AT1G02880.4	chr1:000643063	0.0	C/643063-643208,643305-643554,643644-643745,643877-643921	AT1G02880.4 CDS AT1G02880 ID=AT1G02880.4; Parent=AT1G02880; Name=AT1G02880.4; Note=thiamin pyrophosphokinase1; curator_summary=Encodes a thiamine pyrophosphokinase capable of producing thiamine pyrophosphate from free thiamine.; conf_class=2; symbol=TPK1; full_name=thiamin pyrophosphokinase1; computational_description=thiamin pyrophosphokinase1 (TPK1)%3B FUNCTIONS IN: thiamin diphosphokinase activity%3B INVOLVED IN: thiamin metabolic process%3B LOCATED IN: cytosol%3B EXPRESSED IN: 6 plant structures%3B CONTAINS InterPro DOMAIN/s: Thiamin pyrophosphokinase%2C vitamin B1-binding domain (InterPro:IPR007373)%2C Thiamin pyrophosphokinase (InterPro:IPR006282)%2C Thiamin pyrophosphokinase%2C catalytic domain (InterPro:IPR007371)%3B BEST Arabidopsis thaliana protein match is: thiamin pyrophosphokinase 2 (TAIR:AT2G44750.2)%3B Has 1216 Blast hits to 1216 proteins in 497 species: Archae - 0%3B Bacteria - 615%3B Metazoa - 133%3B Fungi - 131%3B Plants - 88%3B Viruses - 0%3B Other Eukaryotes - 249 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17611796, PMID:18650403, PMID:18753285, locus:2024660; locus_type=protein_coding
AT1G02880.5	chr1:000643063	0.0	C/643063-643208,643305-643554,643644-643745,643877-643972	AT1G02880.5 CDS AT1G02880 ID=AT1G02880.5; Parent=AT1G02880; Name=AT1G02880.5; Note=thiamin pyrophosphokinase1; symbol=TPK1; full_name=thiamin pyrophosphokinase1; Dbxref=PMID:17611796, PMID:18650403, PMID:18753285, locus:2024660; curator_summary=Encodes a thiamine pyrophosphokinase capable of producing thiamine pyrophosphate from free thiamine.; computational_description=thiamin pyrophosphokinase1 (TPK1)%3B FUNCTIONS IN: thiamin diphosphokinase activity%3B INVOLVED IN: thiamin metabolic process%3B LOCATED IN: cytosol%3B EXPRESSED IN: 6 plant structures%3B CONTAINS InterPro DOMAIN/s: Thiamin pyrophosphokinase%2C vitamin B1-binding domain (InterPro:IPR007373)%2C Thiamin pyrophosphokinase (InterPro:IPR006282)%2C Thiamin pyrophosphokinase%2C catalytic domain (InterPro:IPR007371)%3B BEST Arabidopsis thaliana protein match is: thiamin pyrophosphokinase 2 (TAIR:AT2G44750.2)%3B Has 1216 Blast hits to 1216 proteins in 497 species: Archae - 0%3B Bacteria - 615%3B Metazoa - 133%3B Fungi - 131%3B Plants - 88%3B Viruses - 0%3B Other Eukaryotes - 249 (source: NCBI BLink).; locus_type=protein_coding
AT1G02880.6	chr1:000643063	0.0	C/643063-643208,643305-643554,643644-643745,643877-643949,644142-644256,644350-644485	AT1G02880.6 CDS AT1G02880 ID=AT1G02880.6; Parent=AT1G02880; Name=AT1G02880.6; Note=thiamin pyrophosphokinase1; symbol=TPK1; full_name=thiamin pyrophosphokinase1; curator_summary=Encodes a thiamine pyrophosphokinase capable of producing thiamine pyrophosphate from free thiamine.; computational_description=thiamin pyrophosphokinase1 (TPK1)%3B FUNCTIONS IN: thiamin diphosphokinase activity%3B INVOLVED IN: thiamin metabolic process%3B LOCATED IN: cytosol%3B EXPRESSED IN: 6 plant structures%3B CONTAINS InterPro DOMAIN/s: Thiamin pyrophosphokinase%2C vitamin B1-binding domain (InterPro:IPR007373)%2C Thiamin pyrophosphokinase (InterPro:IPR006282)%2C Thiamin pyrophosphokinase%2C catalytic domain (InterPro:IPR007371)%3B BEST Arabidopsis thaliana protein match is: thiamin pyrophosphokinase 2 (TAIR:AT2G44750.2)%3B Has 1216 Blast hits to 1216 proteins in 497 species: Archae - 0%3B Bacteria - 615%3B Metazoa - 133%3B Fungi - 131%3B Plants - 88%3B Viruses - 0%3B Other Eukaryotes - 249 (source: NCBI BLink).; Dbxref=PMID:17611796, PMID:18650403, PMID:18753285, locus:2024660; locus_type=protein_coding
AT1G02890.1	chr1:000645372	0.0	C/645372-645485,645575-645679,645755-645814,645899-646037,646126-646310,646406-646489,646567-646689,646777-646956,647038-647107,647184-647280,647367-647442,647531-647620,647703-647807,647924-647995,648102-648275,648362-648432,648508-648656,648766-648829,648911-649139,649368-649459,649551-649675,649762-650438,650563-650709,650791-650904,651128-651219,651320-651539,651711-651797	AT1G02890.1 CDS AT1G02890 ID=AT1G02890.1; Parent=AT1G02890; Name=AT1G02890.1; Note=AAA-type ATPase family protein; conf_class=2; computational_description=AAA-type ATPase family protein%3B FUNCTIONS IN: nucleoside-triphosphatase activity%2C ATPase activity%2C nucleotide binding%2C ATP binding%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C ATPase%2C AAA-type%2C core (InterPro:IPR003959)%2C ATPase%2C AAA-type%2C conserved site (InterPro:IPR003960)%2C SMAD/FHA domain (InterPro:IPR008984)%3B BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT4G02480.1)%3B Has 33727 Blast hits to 31290 proteins in 3133 species: Archae - 1605%3B Bacteria - 13154%3B Metazoa - 4868%3B Fungi - 3603%3B Plants - 2878%3B Viruses - 36%3B Other Eukaryotes - 7583 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:18650403, PMID:18775970, locus:2024655; locus_type=protein_coding
AT1G02890.2	chr1:000645372	0.0	C/645372-645485,645575-645679,645755-645814,645899-646037,646126-646310,646567-646689,646777-646956,647038-647107,647184-647280,647367-647442,647531-647620,647703-647807,647924-647995,648102-648275,648362-648432,648508-648656,648766-648829,648911-649139,649368-649459,649551-649675,649762-650438,650563-650709,650791-650904,651128-651219,651320-651539,651711-651797	AT1G02890.2 CDS AT1G02890 ID=AT1G02890.2; Parent=AT1G02890; Name=AT1G02890.2; Note=AAA-type ATPase family protein; conf_class=2; computational_description=AAA-type ATPase family protein%3B FUNCTIONS IN: nucleoside-triphosphatase activity%2C ATPase activity%2C nucleotide binding%2C ATP binding%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C ATPase%2C AAA-type%2C core (InterPro:IPR003959)%2C ATPase%2C AAA-type%2C conserved site (InterPro:IPR003960)%2C SMAD/FHA domain (InterPro:IPR008984)%3B BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT4G02480.1)%3B Has 33727 Blast hits to 31290 proteins in 3133 species: Archae - 1605%3B Bacteria - 13154%3B Metazoa - 4868%3B Fungi - 3603%3B Plants - 2878%3B Viruses - 36%3B Other Eukaryotes - 7583 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:18650403, PMID:18775970, locus:2024655; locus_type=protein_coding
AT1G02900.1	chr1:000653976	0.0	C/653976-654338	AT1G02900.1 CDS AT1G02900 ID=AT1G02900.1; Parent=AT1G02900; Name=AT1G02900.1; Note=rapid alkalinization factor 1; curator_summary=Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF)%2C and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. Mediates Ca2+-dependent signaling.; conf_class=1; symbol=RALF1; Alias=ATRALF1, RAPID ALKALINIZATION FACTOR 1, RALFL1, RALF-LIKE 1; full_name=rapid alkalinization factor 1; computational_description=rapid alkalinization factor 1 (RALF1)%3B CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801)%3B BEST Arabidopsis thaliana protein match is: ralf-like 33 (TAIR:AT4G15800.1)%3B Has 267 Blast hits to 267 proteins in 20 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 2%3B Plants - 265%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12611624, PMID:16173598, PMID:16531500, PMID:16673935, PMID:18775699, PMID:18494498, PMID:24620000, PMID:25482784, locus:2024730; locus_type=protein_coding
AT1G02910.1	chr1:000655749	0.0	C/655749-655823,655933-656029,656134-656234,656317-656505,656588-656745,656827-657058,657142-657277,657392-657495,657856-658125	AT1G02910.1 CDS AT1G02910 ID=AT1G02910.1; Parent=AT1G02910; Name=AT1G02910.1; Note=tetratricopeptide repeat (TPR)-containing protein; curator_summary=Mutants defective in this gene were shown to have a reduced PSII content (overall reduction in the levels of several PSII subunits) and a disrupted grana stack structure. The N-terminal half of the protein contains two tetratricopeptide repeat (TPR) motifs that are arranged tandemly%2C each consisting of a 34-residue degenerate consensus sequence. The N-terminal sequence is rich in positive and hydroxylated amino acid residues.; conf_class=1; symbol=LPA1; full_name=LOW PSII ACCUMULATION1; computational_description=LOW PSII ACCUMULATION1 (LPA1)%3B FUNCTIONS IN: binding%3B INVOLVED IN: photosystem II oxygen evolving complex assembly%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3493 (InterPro:IPR021883)%2C Tetratricopeptide-like helical (InterPro:IPR011990)%2C Tetratricopeptide repeat-containing (InterPro:IPR013026)%2C Tetratricopeptide repeat (InterPro:IPR019734)%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28740.1)%3B Has 201 Blast hits to 200 proteins in 49 species: Archae - 3%3B Bacteria - 57%3B Metazoa - 0%3B Fungi - 0%3B Plants - 127%3B Viruses - 0%3B Other Eukaryotes - 14 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14576160, PMID:16531500, PMID:19574473, PMID:20923938, locus:2024720; locus_type=protein_coding
AT1G02910.2	chr1:000656293	0.0	C/656293-656505,656588-656745,656827-657058,657142-657277,657392-657495,657856-658125	AT1G02910.2 CDS AT1G02910 ID=AT1G02910.2; Parent=AT1G02910; Name=AT1G02910.2; Note=tetratricopeptide repeat (TPR)-containing protein; symbol=LPA1; full_name=LOW PSII ACCUMULATION1; curator_summary=Mutants defective in this gene were shown to have a reduced PSII content (overall reduction in the levels of several PSII subunits) and a disrupted grana stack structure. The N-terminal half of the protein contains two tetratricopeptide repeat (TPR) motifs that are arranged tandemly%2C each consisting of a 34-residue degenerate consensus sequence. The N-terminal sequence is rich in positive and hydroxylated amino acid residues.; computational_description=LOW PSII ACCUMULATION1 (LPA1)%3B FUNCTIONS IN: binding%3B INVOLVED IN: photosystem II oxygen evolving complex assembly%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3493 (InterPro:IPR021883)%2C Tetratricopeptide-like helical (InterPro:IPR011990)%2C Tetratricopeptide repeat-containing (InterPro:IPR013026)%2C Tetratricopeptide repeat (InterPro:IPR019734)%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28740.1)%3B Has 201 Blast hits to 200 proteins in 49 species: Archae - 3%3B Bacteria - 57%3B Metazoa - 0%3B Fungi - 0%3B Plants - 127%3B Viruses - 0%3B Other Eukaryotes - 14 (source: NCBI BLink).; Dbxref=PMID:14576160, PMID:16531500, PMID:19574473, PMID:20923938, locus:2024720; locus_type=protein_coding
AT1G02920.1	chr1:000658886	0.0	C/658886-659316,659423-659471,659556-659705	AT1G02920.1 CDS AT1G02920 ID=AT1G02920.1; Parent=AT1G02920; Name=AT1G02920.1; Note=glutathione S-transferase 7; curator_summary=Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).; conf_class=2; symbol=GSTF7; Alias=ATGST11, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 11, ATGSTF7, ATGSTF8, GST11, GLUTATHIONE S-TRANSFERASE 11; full_name=glutathione S-transferase 7; computational_description=glutathione S-transferase 7 (GSTF7)%3B FUNCTIONS IN: glutathione transferase activity%2C copper ion binding%2C cobalt ion binding%2C glutathione binding%3B INVOLVED IN: defense response to fungus%2C incompatible interaction%2C response to cadmium ion%2C response to salt stress%2C defense response to bacterium%2C toxin catabolic process%3B LOCATED IN: nucleus%2C vacuole%2C cytoplasm%3B EXPRESSED IN: root%2C cultured cell%2C leaf%3B EXPRESSED DURING: seedling growth%3B CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335)%2C Glutathione S-transferase%2C C-terminal (InterPro:IPR004046)%2C Glutathione S-transferase%2C C-terminal-like (InterPro:IPR010987)%2C Glutathione S-transferase/chloride channel%2C C-terminal (InterPro:IPR017933)%2C Glutathione S-transferase%2C N-terminal (InterPro:IPR004045)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B BEST Arabidopsis thaliana protein match is: glutathione S-transferase 6 (TAIR:AT1G02930.2)%3B Has 10685 Blast hits to 10678 proteins in 1256 species: Archae - 0%3B Bacteria - 5560%3B Metazoa - 1482%3B Fungi - 785%3B Plants - 1082%3B Viruses - 0%3B Other Eukaryotes - 1776 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12090627, PMID:12169696, PMID:12376638, PMID:12368493, PMID:12535341, PMID:12609038, PMID:12671088, PMID:12805589, PMID:12881503, PMID:10785664, PMID:15010611, PMID:15047898, PMID:15208337, PMID:15276439, PMID:15371352, PMID:15347784, PMID:15494554, PMID:15610358, PMID:15618427, PMID:15728340, PMID:15539469, PMID:15720685, PMID:15829605, PMID:14742872, PMID:16055689, PMID:16088002, PMID:16183833, PMID:16502469, PMID:16547123, PMID:16531500, PMID:16776300, PMID:16766691, PMID:16925600, PMID:17028151, PMID:17163880, PMID:17376161, PMID:17369372, PMID:17828791, PMID:18178967, PMID:18650403, PMID:18684332, PMID:19174456, PMID:19857612, PMID:20018591, PMID:20736450, PMID:22633844, PMID:23009097, locus:2024700; locus_type=protein_coding
AT1G02930.1	chr1:000661363	0.0	C/661363-661790,661901-661949,662042-662191	AT1G02930.1 CDS AT1G02930 ID=AT1G02930.1; Parent=AT1G02930; Name=AT1G02930.1; Note=glutathione S-transferase 6; curator_summary=Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).; conf_class=2; symbol=GSTF6; Alias=ATGST1, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, ATGSTF3, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ATGSTF6, GLUTATHIONE S-TRANSFERASE, ERD11, EARLY RESPONSIVE TO DEHYDRATION 11, GST1, GLUTATHIONE S-TRANSFERASE 1; full_name=glutathione S-transferase 6; computational_description=glutathione S-transferase 6 (GSTF6)%3B FUNCTIONS IN: glutathione transferase activity%2C copper ion binding%2C cobalt ion binding%2C glutathione binding%3B INVOLVED IN: in 7 processes%3B LOCATED IN: mitochondrion%2C cell wall%2C vacuole%2C cytoplasm%3B EXPRESSED IN: fruit%2C root%2C cultured cell%2C leaf%3B EXPRESSED DURING: seedling growth%2C seed development stages%3B CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335)%2C Glutathione S-transferase%2C C-terminal (InterPro:IPR004046)%2C Glutathione S-transferase%2C C-terminal-like (InterPro:IPR010987)%2C Glutathione S-transferase/chloride channel%2C C-terminal (InterPro:IPR017933)%2C Glutathione S-transferase%2C N-terminal (InterPro:IPR004045)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B BEST Arabidopsis thaliana protein match is: glutathione S-transferase 7 (TAIR:AT1G02920.1)%3B Has 11457 Blast hits to 11450 proteins in 1362 species: Archae - 0%3B Bacteria - 6026%3B Metazoa - 1625%3B Fungi - 707%3B Plants - 1232%3B Viruses - 0%3B Other Eukaryotes - 1867 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10550898, PMID:9881167, PMID:9501110, PMID:8075396, PMID:8253194, PMID:11123796, PMID:11532166, PMID:12090627, PMID:12492832, PMID:12881503, PMID:14671022, PMID:10785664, PMID:15069083, PMID:15159623, PMID:15247375, PMID:11971132, PMID:15879447, PMID:16169957, PMID:16829588, PMID:17013749, PMID:17928299, PMID:18541338, PMID:18650403, PMID:18944680, PMID:19067976, PMID:19054359, PMID:19174456, PMID:20031254, PMID:20018591, PMID:19995345, PMID:20180920, PMID:20118269, PMID:20331431, PMID:21054438, PMID:21239642, PMID:21631432, PMID:21735195, PMID:22007023, PMID:22633844, PMID:23661340, locus:2024690; locus_type=protein_coding
AT1G02930.2	chr1:000661363	0.0	C/661363-661790,661901-661949,662042-662191	AT1G02930.2 CDS AT1G02930 ID=AT1G02930.2; Parent=AT1G02930; Name=AT1G02930.2; Note=glutathione S-transferase 6; curator_summary=Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).; conf_class=4; symbol=GSTF6; Alias=ATGST1, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, ATGSTF3, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ATGSTF6, GLUTATHIONE S-TRANSFERASE, ERD11, EARLY RESPONSIVE TO DEHYDRATION 11, GST1, GLUTATHIONE S-TRANSFERASE 1; full_name=glutathione S-transferase 6; computational_description=glutathione S-transferase 6 (GSTF6)%3B FUNCTIONS IN: glutathione transferase activity%2C copper ion binding%2C cobalt ion binding%2C glutathione binding%3B INVOLVED IN: in 7 processes%3B LOCATED IN: mitochondrion%2C cell wall%2C vacuole%2C cytoplasm%3B EXPRESSED IN: fruit%2C root%2C cultured cell%2C leaf%3B EXPRESSED DURING: seedling growth%2C seed development stages%3B CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335)%2C Glutathione S-transferase%2C C-terminal (InterPro:IPR004046)%2C Glutathione S-transferase%2C C-terminal-like (InterPro:IPR010987)%2C Glutathione S-transferase/chloride channel%2C C-terminal (InterPro:IPR017933)%2C Glutathione S-transferase%2C N-terminal (InterPro:IPR004045)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B BEST Arabidopsis thaliana protein match is: glutathione S-transferase 7 (TAIR:AT1G02920.1)%3B Has 11457 Blast hits to 11450 proteins in 1362 species: Archae - 0%3B Bacteria - 6026%3B Metazoa - 1625%3B Fungi - 707%3B Plants - 1232%3B Viruses - 0%3B Other Eukaryotes - 1867 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:10550898, PMID:9881167, PMID:9501110, PMID:8075396, PMID:8253194, PMID:11123796, PMID:11532166, PMID:12090627, PMID:12492832, PMID:12881503, PMID:14671022, PMID:10785664, PMID:15069083, PMID:15159623, PMID:15247375, PMID:11971132, PMID:15879447, PMID:16169957, PMID:16829588, PMID:17013749, PMID:17928299, PMID:18541338, PMID:18650403, PMID:18944680, PMID:19067976, PMID:19054359, PMID:19174456, PMID:20031254, PMID:20018591, PMID:19995345, PMID:20180920, PMID:20118269, PMID:20331431, PMID:21054438, PMID:21239642, PMID:21631432, PMID:21735195, PMID:22007023, PMID:22633844, PMID:23661340, locus:2024690; locus_type=protein_coding
AT1G02940.1	chr1:000663079	0.0	C/663079-663545,663615-663663,663760-663902,664017-664128	AT1G02940.1 CDS AT1G02940 ID=AT1G02940.1; Parent=AT1G02940; Name=AT1G02940.1; Note=glutathione S-transferase (class phi) 5; curator_summary=Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).; conf_class=4; symbol=GSTF5; Alias=ATGSTF5, GLUTATHIONE S-TRANSFERASE (CLASS PHI) 5; full_name=glutathione S-transferase (class phi) 5; computational_description=glutathione S-transferase (class phi) 5 (GSTF5)%3B FUNCTIONS IN: glutathione transferase activity%3B INVOLVED IN: N-terminal protein myristoylation%2C toxin catabolic process%3B LOCATED IN: mitochondrion%2C cytoplasm%3B EXPRESSED IN: 13 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335)%2C Glutathione S-transferase%2C C-terminal (InterPro:IPR004046)%2C Glutathione S-transferase%2C C-terminal-like (InterPro:IPR010987)%2C Glutathione S-transferase/chloride channel%2C C-terminal (InterPro:IPR017933)%2C Glutathione S-transferase%2C N-terminal (InterPro:IPR004045)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B BEST Arabidopsis thaliana protein match is: glutathione S-transferase F4 (TAIR:AT1G02950.3)%3B Has 13934 Blast hits to 13925 proteins in 1335 species: Archae - 2%3B Bacteria - 8056%3B Metazoa - 1678%3B Fungi - 823%3B Plants - 1107%3B Viruses - 0%3B Other Eukaryotes - 2268 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:12090627, PMID:12912986, PMID:14671022, PMID:15159623, PMID:15807784, PMID:17194769, PMID:17478635, PMID:18772308, locus:2024775; locus_type=protein_coding
AT1G02940.2	chr1:000663079	0.0	C/663079-663545,663615-663663,663760-663902,664017-664130,664205-664277	AT1G02940.2 CDS AT1G02940 ID=AT1G02940.2; Parent=AT1G02940; Name=AT1G02940.2; Note=glutathione S-transferase (class phi) 5; symbol=GSTF5; Alias=ATGSTF5, GLUTATHIONE S-TRANSFERASE (CLASS PHI) 5; full_name=glutathione S-transferase (class phi) 5; curator_summary=Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).; computational_description=glutathione S-transferase (class phi) 5 (GSTF5)%3B FUNCTIONS IN: glutathione transferase activity%3B INVOLVED IN: N-terminal protein myristoylation%2C toxin catabolic process%3B LOCATED IN: mitochondrion%2C cytoplasm%3B EXPRESSED IN: 13 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335)%2C Glutathione S-transferase%2C C-terminal (InterPro:IPR004046)%2C Glutathione S-transferase%2C C-terminal-like (InterPro:IPR010987)%2C Glutathione S-transferase/chloride channel%2C C-terminal (InterPro:IPR017933)%2C Glutathione S-transferase%2C N-terminal (InterPro:IPR004045)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B BEST Arabidopsis thaliana protein match is: glutathione S-transferase F4 (TAIR:AT1G02950.3)%3B Has 13934 Blast hits to 13925 proteins in 1335 species: Archae - 2%3B Bacteria - 8056%3B Metazoa - 1678%3B Fungi - 823%3B Plants - 1107%3B Viruses - 0%3B Other Eukaryotes - 2268 (source: NCBI BLink).; Dbxref=PMID:12090627, PMID:12912986, PMID:14671022, PMID:15159623, PMID:15807784, PMID:17194769, PMID:17478635, PMID:18772308, locus:2024775; locus_type=protein_coding
AT1G02940.3	chr1:000663079	0.0	C/663079-663545,663615-663663,663760-663902,664017-664130,664205-664241	AT1G02940.3 CDS AT1G02940 ID=AT1G02940.3; Parent=AT1G02940; Name=AT1G02940.3; Note=glutathione S-transferase (class phi) 5; symbol=GSTF5; Alias=ATGSTF5, GLUTATHIONE S-TRANSFERASE (CLASS PHI) 5; full_name=glutathione S-transferase (class phi) 5; curator_summary=Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).; computational_description=glutathione S-transferase (class phi) 5 (GSTF5)%3B FUNCTIONS IN: glutathione transferase activity%3B INVOLVED IN: N-terminal protein myristoylation%2C toxin catabolic process%3B LOCATED IN: mitochondrion%2C cytoplasm%3B EXPRESSED IN: 13 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335)%2C Glutathione S-transferase%2C C-terminal (InterPro:IPR004046)%2C Glutathione S-transferase%2C C-terminal-like (InterPro:IPR010987)%2C Glutathione S-transferase/chloride channel%2C C-terminal (InterPro:IPR017933)%2C Glutathione S-transferase%2C N-terminal (InterPro:IPR004045)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B BEST Arabidopsis thaliana protein match is: glutathione S-transferase F4 (TAIR:AT1G02950.3)%3B Has 13934 Blast hits to 13925 proteins in 1335 species: Archae - 2%3B Bacteria - 8056%3B Metazoa - 1678%3B Fungi - 823%3B Plants - 1107%3B Viruses - 0%3B Other Eukaryotes - 2268 (source: NCBI BLink).; Dbxref=PMID:12090627, PMID:12912986, PMID:14671022, PMID:15159623, PMID:15807784, PMID:17194769, PMID:17478635, PMID:18772308, locus:2024775; locus_type=protein_coding
AT1G02940.4	chr1:000663079	0.0	C/663079-663545,663615-663663,663760-663902,664017-664128	AT1G02940.4 CDS AT1G02940 ID=AT1G02940.4; Parent=AT1G02940; Name=AT1G02940.4; Note=glutathione S-transferase (class phi) 5; symbol=GSTF5; Alias=ATGSTF5, GLUTATHIONE S-TRANSFERASE (CLASS PHI) 5; full_name=glutathione S-transferase (class phi) 5; Dbxref=PMID:12090627, PMID:12912986, PMID:14671022, PMID:15159623, PMID:15807784, PMID:17194769, PMID:17478635, PMID:18772308, locus:2024775; curator_summary=Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).; computational_description=glutathione S-transferase (class phi) 5 (GSTF5)%3B FUNCTIONS IN: glutathione transferase activity%3B INVOLVED IN: N-terminal protein myristoylation%2C toxin catabolic process%3B LOCATED IN: mitochondrion%2C cytoplasm%3B EXPRESSED IN: 13 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335)%2C Glutathione S-transferase%2C C-terminal (InterPro:IPR004046)%2C Glutathione S-transferase%2C C-terminal-like (InterPro:IPR010987)%2C Glutathione S-transferase/chloride channel%2C C-terminal (InterPro:IPR017933)%2C Glutathione S-transferase%2C N-terminal (InterPro:IPR004045)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B BEST Arabidopsis thaliana protein match is: glutathione S-transferase F4 (TAIR:AT1G02950.3)%3B Has 13934 Blast hits to 13925 proteins in 1335 species: Archae - 2%3B Bacteria - 8056%3B Metazoa - 1678%3B Fungi - 823%3B Plants - 1107%3B Viruses - 0%3B Other Eukaryotes - 2268 (source: NCBI BLink).; locus_type=protein_coding
AT1TE02160	chr1:000664383	0.0	C/664383-664538	AT1TE02160 transposable_element AT1TE02160 ID=AT1TE02160; Name=AT1TE02160; Alias=META1
AT1TE02165	chr1:000664539	0.0	W/664539-664905	AT1TE02165 transposable_element AT1TE02165 ID=AT1TE02165; Name=AT1TE02165; Alias=ATREP10B
AT1G02950.1	chr1:000665308	0.0	C/665308-665777,665862-665910,666114-666256,666351-666420	AT1G02950.1 CDS AT1G02950 ID=AT1G02950.1; Parent=AT1G02950; Name=AT1G02950.1; Note=glutathione S-transferase F4; curator_summary=Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).; conf_class=2; symbol=GSTF4; Alias=ATGSTF4, glutathione S-transferase F4, GST31, GLUTATHIONE S-TRANSFERASE 31; full_name=glutathione S-transferase F4; computational_description=glutathione S-transferase F4 (GSTF4)%3B CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335)%2C Glutathione S-transferase%2C C-terminal (InterPro:IPR004046)%2C Glutathione S-transferase%2C C-terminal-like (InterPro:IPR010987)%2C Glutathione S-transferase/chloride channel%2C C-terminal (InterPro:IPR017933)%2C Glutathione S-transferase%2C N-terminal (InterPro:IPR004045)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B BEST Arabidopsis thaliana protein match is: glutathione S-transferase (class phi) 5 (TAIR:AT1G02940.1)%3B Has 7141 Blast hits to 7136 proteins in 1104 species: Archae - 0%3B Bacteria - 3457%3B Metazoa - 949%3B Fungi - 470%3B Plants - 873%3B Viruses - 0%3B Other Eukaryotes - 1392 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12090627, PMID:15159623, PMID:18650403, PMID:22529284, PMID:22633844, locus:2024765; locus_type=protein_coding
AT1G02950.2	chr1:000665308	0.0	C/665308-665777,665862-665910,666114-666262,666351-666420	AT1G02950.2 CDS AT1G02950 ID=AT1G02950.2; Parent=AT1G02950; Name=AT1G02950.2; Note=glutathione S-transferase F4; curator_summary=Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).; conf_class=1; symbol=GSTF4; Alias=ATGSTF4, glutathione S-transferase F4, GST31, GLUTATHIONE S-TRANSFERASE 31; full_name=glutathione S-transferase F4; computational_description=glutathione S-transferase F4 (GSTF4)%3B CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335)%2C Glutathione S-transferase%2C C-terminal (InterPro:IPR004046)%2C Glutathione S-transferase%2C C-terminal-like (InterPro:IPR010987)%2C Glutathione S-transferase/chloride channel%2C C-terminal (InterPro:IPR017933)%2C Glutathione S-transferase%2C N-terminal (InterPro:IPR004045)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B BEST Arabidopsis thaliana protein match is: glutathione S-transferase (class phi) 5 (TAIR:AT1G02940.1)%3B Has 7141 Blast hits to 7136 proteins in 1104 species: Archae - 0%3B Bacteria - 3457%3B Metazoa - 949%3B Fungi - 470%3B Plants - 873%3B Viruses - 0%3B Other Eukaryotes - 1392 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12090627, PMID:15159623, PMID:18650403, PMID:22529284, PMID:22633844, locus:2024765; locus_type=protein_coding
AT1G02950.3	chr1:000665308	0.0	C/665308-665777,665862-665910,666114-666256,666351-666420	AT1G02950.3 CDS AT1G02950 ID=AT1G02950.3; Parent=AT1G02950; Name=AT1G02950.3; Note=glutathione S-transferase F4; curator_summary=Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).; conf_class=3; symbol=GSTF4; Alias=ATGSTF4, glutathione S-transferase F4, GST31, GLUTATHIONE S-TRANSFERASE 31; full_name=glutathione S-transferase F4; computational_description=glutathione S-transferase F4 (GSTF4)%3B CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335)%2C Glutathione S-transferase%2C C-terminal (InterPro:IPR004046)%2C Glutathione S-transferase%2C C-terminal-like (InterPro:IPR010987)%2C Glutathione S-transferase/chloride channel%2C C-terminal (InterPro:IPR017933)%2C Glutathione S-transferase%2C N-terminal (InterPro:IPR004045)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B BEST Arabidopsis thaliana protein match is: glutathione S-transferase (class phi) 5 (TAIR:AT1G02940.1)%3B Has 7141 Blast hits to 7136 proteins in 1104 species: Archae - 0%3B Bacteria - 3457%3B Metazoa - 949%3B Fungi - 470%3B Plants - 873%3B Viruses - 0%3B Other Eukaryotes - 1392 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12090627, PMID:15159623, PMID:18650403, PMID:22529284, PMID:22633844, locus:2024765; locus_type=protein_coding
AT1G02950.4	chr1:000665308	0.0	C/665308-665777,665858-665910,666114-666244	AT1G02950.4 CDS AT1G02950 ID=AT1G02950.4; Parent=AT1G02950; Name=AT1G02950.4; Note=glutathione S-transferase F4; curator_summary=Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).; conf_class=6; symbol=GSTF4; Alias=ATGSTF4, glutathione S-transferase F4, GST31, GLUTATHIONE S-TRANSFERASE 31; full_name=glutathione S-transferase F4; computational_description=glutathione S-transferase F4 (GSTF4)%3B CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335)%2C Glutathione S-transferase%2C C-terminal (InterPro:IPR004046)%2C Glutathione S-transferase%2C C-terminal-like (InterPro:IPR010987)%2C Glutathione S-transferase/chloride channel%2C C-terminal (InterPro:IPR017933)%2C Glutathione S-transferase%2C N-terminal (InterPro:IPR004045)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B BEST Arabidopsis thaliana protein match is: glutathione S-transferase (class phi) 5 (TAIR:AT1G02940.1)%3B Has 7141 Blast hits to 7136 proteins in 1104 species: Archae - 0%3B Bacteria - 3457%3B Metazoa - 949%3B Fungi - 470%3B Plants - 873%3B Viruses - 0%3B Other Eukaryotes - 1392 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:12090627, PMID:15159623, PMID:18650403, PMID:22529284, PMID:22633844, locus:2024765; locus_type=protein_coding
AT1G02950.5	chr1:000665308	0.0	C/665308-665777,665862-665910,666114-666256,666351-666456	AT1G02950.5 CDS AT1G02950 ID=AT1G02950.5; Parent=AT1G02950; Name=AT1G02950.5; Note=glutathione S-transferase F4; symbol=GSTF4; Alias=ATGSTF4, glutathione S-transferase F4, GST31, GLUTATHIONE S-TRANSFERASE 31; full_name=glutathione S-transferase F4; curator_summary=Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).; computational_description=glutathione S-transferase F4 (GSTF4)%3B CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335)%2C Glutathione S-transferase%2C C-terminal (InterPro:IPR004046)%2C Glutathione S-transferase%2C C-terminal-like (InterPro:IPR010987)%2C Glutathione S-transferase/chloride channel%2C C-terminal (InterPro:IPR017933)%2C Glutathione S-transferase%2C N-terminal (InterPro:IPR004045)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B BEST Arabidopsis thaliana protein match is: glutathione S-transferase (class phi) 5 (TAIR:AT1G02940.1)%3B Has 7141 Blast hits to 7136 proteins in 1104 species: Archae - 0%3B Bacteria - 3457%3B Metazoa - 949%3B Fungi - 470%3B Plants - 873%3B Viruses - 0%3B Other Eukaryotes - 1392 (source: NCBI BLink).; Dbxref=PMID:12090627, PMID:15159623, PMID:18650403, PMID:22529284, PMID:22633844, locus:2024765; locus_type=protein_coding
AT1G02952.1	chr1:000665354	0.0	W/665354-666367	AT1G02952.1 antisense_lncRNA AT1G02952 ID=AT1G02952.1; Parent=AT1G02952; curator_summary=Potential natural antisense gene%2C locus overlaps with AT1G02950; Dbxref=locus:4010713409; Name=AT1G02952.1; description=Natural antisense transcript overlaps with AT1G02950; Note=Natural antisense transcript overlaps with AT1G02950; locus_type=antisense_long_noncoding_rna
AT1G02952.2	chr1:000665881	0.0	W/665881-666136	AT1G02952.2 antisense_lncRNA AT1G02952 ID=AT1G02952.2; Parent=AT1G02952; Name=AT1G02952.2; description=Natural antisense transcript overlaps with AT1G02950; curator_summary=Potential natural antisense gene%2C locus overlaps with AT1G02950; Note=Natural antisense transcript overlaps with AT1G02950; Dbxref=locus:4010713409; locus_type=antisense_long_noncoding_rna
AT1G02960.1	chr1:000667002	0.0	C/667002-667068,667151-667281,667373-667437,667541-667641,667735-667868,667957-668082,668173-668468,668613-668745,668856-668987,669079-669134,669227-669266,669461-669513,669620-669650,669750-669773	AT1G02960.1 CDS AT1G02960 ID=AT1G02960.1; Parent=AT1G02960; Name=AT1G02960.1; Note=kinetochore protein; conf_class=2; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02965.1)%3B Has 83 Blast hits to 82 proteins in 37 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 20%3B Fungi - 7%3B Plants - 29%3B Viruses - 0%3B Other Eukaryotes - 25 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12372144, locus:2024760; locus_type=protein_coding
AT1G02960.2	chr1:000667002	0.0	C/667002-667068,667151-667281,667373-667464,667541-667641,667735-667868,667957-668082,668173-668468,668613-668745,668856-668987,669079-669134,669227-669266,669461-669513,669620-669650,669750-669773	AT1G02960.2 CDS AT1G02960 ID=AT1G02960.2; Parent=AT1G02960; Name=AT1G02960.2; Note=kinetochore protein; conf_class=2; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02965.1)%3B Has 83 Blast hits to 82 proteins in 37 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 20%3B Fungi - 7%3B Plants - 29%3B Viruses - 0%3B Other Eukaryotes - 25 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12372144, locus:2024760; locus_type=protein_coding
AT1G02960.3	chr1:000667325	0.0	C/667325-667437,667541-667641,667735-667868,667957-668082,668173-668468,668613-668745,668856-668987,669079-669134,669227-669266,669461-669513,669620-669650,669750-669773	AT1G02960.3 CDS AT1G02960 ID=AT1G02960.3; Parent=AT1G02960; Name=AT1G02960.3; Note=kinetochore protein; conf_class=2; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02965.1)%3B Has 83 Blast hits to 82 proteins in 37 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 20%3B Fungi - 7%3B Plants - 29%3B Viruses - 0%3B Other Eukaryotes - 25 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12372144, locus:2024760; locus_type=protein_coding
AT1G02960.5	chr1:000667325	0.0	C/667325-667464,667541-667641,667735-667868,667957-668082,668173-668468,668613-668745,668856-668987,669079-669134,669227-669266,669461-669513,669620-669650,669750-669773	AT1G02960.5 CDS AT1G02960 ID=AT1G02960.5; Parent=AT1G02960; Name=AT1G02960.5; Note=kinetochore protein; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02965.1)%3B Has 83 Blast hits to 82 proteins in 37 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 20%3B Fungi - 7%3B Plants - 29%3B Viruses - 0%3B Other Eukaryotes - 25 (source: NCBI BLink).; Dbxref=PMID:12372144, locus:2024760; locus_type=protein_coding
AT1G02960.4	chr1:000667503	0.0	C/667503-667641,667735-667868,667957-668082,668173-668468,668613-668745,668856-668987,669079-669134,669227-669266,669461-669513,669620-669650,669750-669773	AT1G02960.4 CDS AT1G02960 ID=AT1G02960.4; Parent=AT1G02960; Name=AT1G02960.4; Note=kinetochore protein; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02965.1)%3B Has 83 Blast hits to 82 proteins in 37 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 20%3B Fungi - 7%3B Plants - 29%3B Viruses - 0%3B Other Eukaryotes - 25 (source: NCBI BLink).; Dbxref=PMID:12372144, locus:2024760; locus_type=protein_coding
AT1G02960.6	chr1:000667503	0.0	C/667503-667641,667735-667868,667957-668082,668173-668468,668613-668745,668856-668987,669079-669134,669227-669266,669461-669513,669620-669650,669750-669773	AT1G02960.6 CDS AT1G02960 ID=AT1G02960.6; Parent=AT1G02960; Name=AT1G02960.6; Note=kinetochore protein; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02965.1)%3B Has 83 Blast hits to 82 proteins in 37 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 20%3B Fungi - 7%3B Plants - 29%3B Viruses - 0%3B Other Eukaryotes - 25 (source: NCBI BLink).; Dbxref=PMID:12372144, locus:2024760; locus_type=protein_coding
AT1TE02175	chr1:000669867	0.0	C/669867-670631	AT1TE02175 transposable_element AT1TE02175 ID=AT1TE02175; Name=AT1TE02175; Alias=ATREP11
AT1G02965.1	chr1:000671661	0.0	C/671661-671783,671919-671974,672106-672145,672332-672406,672518-672548,672651-672814	AT1G02965.1 CDS AT1G02965 ID=AT1G02965.1; Parent=AT1G02965; Name=AT1G02965.1; Note=hypothetical protein; conf_class=6; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02960.3)%3B Has 8 Blast hits to 8 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 8%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=**; Dbxref=locus:504956274; locus_type=protein_coding
AT1TE02180	chr1:000672779	0.0	C/672779-673137	AT1TE02180 transposable_element AT1TE02180 ID=AT1TE02180; Name=AT1TE02180; Alias=HELITRONY2
AT1G02970.1	chr1:000673408	0.0	W/673408-673706,673964-674024,674099-674165,674441-674704,674813-674880,674968-675077,675187-675227,675340-675494,675592-675945,676044-676127	AT1G02970.1 CDS AT1G02970 ID=AT1G02970.1; Parent=AT1G02970; Name=AT1G02970.1; Note=WEE1-like kinase; curator_summary=Protein kinase that negatively regulates the entry into mitosis.; conf_class=1; symbol=WEE1; Alias=ATWEE1; full_name=WEE1 kinase homolog; computational_description=WEE1 kinase homolog (WEE1)%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT4G19110.2)%3B Has 100256 Blast hits to 98965 proteins in 4396 species: Archae - 165%3B Bacteria - 12308%3B Metazoa - 39873%3B Fungi - 10996%3B Plants - 18240%3B Viruses - 408%3B Other Eukaryotes - 18266 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11971144, PMID:17209125, PMID:19880799, PMID:20647223, PMID:20706207, PMID:21498679, PMID:21558458, PMID:21220338, PMID:22452972, PMID:22589469, PMID:23065633, PMID:23536609, PMID:25217508, PMID:25595823, locus:2024780; locus_type=protein_coding
AT1TE02190	chr1:000676495	0.0	W/676495-677066	AT1TE02190 transposable_element AT1TE02190 ID=AT1TE02190; Name=AT1TE02190; Alias=ATREP9
AT1TE02195	chr1:000677067	0.0	W/677067-677162	AT1TE02195 transposable_element AT1TE02195 ID=AT1TE02195; Name=AT1TE02195; Alias=ATREP4
AT1TE02200	chr1:000677163	0.0	C/677163-677290	AT1TE02200 transposable_element AT1TE02200 ID=AT1TE02200; Name=AT1TE02200; Alias=HELITRONY1D
AT1G02980.1	chr1:000677869	0.0	W/677869-678002,678094-678193,678289-678522,678592-678873,678971-679060,679148-679288,679368-679490,679578-679730,679821-679997,680103-680264,680341-680484,680559-680777,680858-681025,681111-681212	AT1G02980.1 CDS AT1G02980 ID=AT1G02980.1; Parent=AT1G02980; Name=AT1G02980.1; Note=cullin 2; curator_summary=encodes an Arabidopsis cullin; conf_class=2; symbol=CUL2; Alias=ATCUL2; full_name=cullin 2; computational_description=cullin 2 (CUL2)%3B FUNCTIONS IN: ubiquitin protein ligase binding%3B INVOLVED IN: cell cycle%2C ubiquitin-dependent protein catabolic process%3B LOCATED IN: SCF ubiquitin ligase complex%2C chloroplast envelope%3B EXPRESSED IN: sperm cell%2C flower%3B EXPRESSED DURING: petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991)%2C Cullin homology (InterPro:IPR016158)%2C Cullin protein%2C neddylation domain (InterPro:IPR019559)%2C Cullin%2C N-terminal (InterPro:IPR001373)%2C Cullin repeat-like-containing domain (InterPro:IPR016159)%3B BEST Arabidopsis thaliana protein match is: Cullin family protein (TAIR:AT1G43140.1)%3B Has 2240 Blast hits to 2201 proteins in 240 species: Archae - 0%3B Bacteria - 18%3B Metazoa - 947%3B Fungi - 508%3B Plants - 372%3B Viruses - 0%3B Other Eukaryotes - 395 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12058059, PMID:12383089, PMID:12615944, PMID:12795696, PMID:15618422, PMID:15860010, PMID:16720694, PMID:20736450, locus:2024755; locus_type=protein_coding
AT1G02980.2	chr1:000677869	0.0	W/677869-678002,678094-678193,678289-678522,678592-678873,678971-679060,679148-679288,679368-679490,679578-679730,679821-679997,680103-680264,680341-680484,680559-680777,680858-681025,681111-681212	AT1G02980.2 CDS AT1G02980 ID=AT1G02980.2; Parent=AT1G02980; Name=AT1G02980.2; Note=cullin 2; symbol=CUL2; Alias=ATCUL2; full_name=cullin 2; Dbxref=PMID:12058059, PMID:12383089, PMID:12615944, PMID:12795696, PMID:15618422, PMID:15860010, PMID:16720694, PMID:20736450, locus:2024755; curator_summary=encodes an Arabidopsis cullin; computational_description=cullin 2 (CUL2)%3B FUNCTIONS IN: ubiquitin protein ligase binding%3B INVOLVED IN: cell cycle%2C ubiquitin-dependent protein catabolic process%3B LOCATED IN: SCF ubiquitin ligase complex%2C chloroplast envelope%3B EXPRESSED IN: sperm cell%2C flower%3B EXPRESSED DURING: petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991)%2C Cullin homology (InterPro:IPR016158)%2C Cullin protein%2C neddylation domain (InterPro:IPR019559)%2C Cullin%2C N-terminal (InterPro:IPR001373)%2C Cullin repeat-like-containing domain (InterPro:IPR016159)%3B BEST Arabidopsis thaliana protein match is: Cullin family protein (TAIR:AT1G43140.1)%3B Has 2240 Blast hits to 2201 proteins in 240 species: Archae - 0%3B Bacteria - 18%3B Metazoa - 947%3B Fungi - 508%3B Plants - 372%3B Viruses - 0%3B Other Eukaryotes - 395 (source: NCBI BLink).; locus_type=protein_coding
AT1G02990.2	chr1:000681724	0.0	C/681724-681921,682243-682403,682732-682892,683175-683317,683402-684777,684864-685965,686056-686424,686505-686597,686679-686751,686844-686884	AT1G02990.2 CDS AT1G02990 ID=AT1G02990.2; Parent=AT1G02990; Name=AT1G02990.2; Note=hypothetical protein; conf_class=3; computational_description=BEST Arabidopsis thaliana protein match is: CW-type Zinc Finger (TAIR:AT3G62900.1)%3B Has 5847 Blast hits to 4410 proteins in 438 species: Archae - 17%3B Bacteria - 452%3B Metazoa - 2463%3B Fungi - 354%3B Plants - 306%3B Viruses - 11%3B Other Eukaryotes - 2244 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:20687615, locus:2024710; locus_type=protein_coding
AT1G02990.3	chr1:000681724	0.0	C/681724-681921,682243-682403,682732-682892,683175-683317,683402-684777,684864-685965,686056-686424,686505-686605,686679-686751,686844-686996	AT1G02990.3 CDS AT1G02990 ID=AT1G02990.3; Parent=AT1G02990; Name=AT1G02990.3; Note=hypothetical protein; conf_class=3; computational_description=BEST Arabidopsis thaliana protein match is: CW-type Zinc Finger (TAIR:AT3G62900.1)%3B Has 5847 Blast hits to 4410 proteins in 438 species: Archae - 17%3B Bacteria - 452%3B Metazoa - 2463%3B Fungi - 354%3B Plants - 306%3B Viruses - 11%3B Other Eukaryotes - 2244 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:20687615, locus:2024710; locus_type=protein_coding
AT1G02990.4	chr1:000681724	0.0	C/681724-681921,682243-682403,682732-682892,683175-683317,683402-684777,684864-685965,686056-686424,686505-686605,686679-686751,686844-686996	AT1G02990.4 CDS AT1G02990 ID=AT1G02990.4; Parent=AT1G02990; Name=AT1G02990.4; Note=hypothetical protein; Dbxref=PMID:20687615, locus:2024710; computational_description=BEST Arabidopsis thaliana protein match is: CW-type Zinc Finger (TAIR:AT3G62900.1)%3B Has 5847 Blast hits to 4410 proteins in 438 species: Archae - 17%3B Bacteria - 452%3B Metazoa - 2463%3B Fungi - 354%3B Plants - 306%3B Viruses - 11%3B Other Eukaryotes - 2244 (source: NCBI BLink).; locus_type=protein_coding
AT1G02990.6	chr1:000681724	0.0	C/681724-681921,682243-682403,682732-682892,683175-683317,683402-684777,684864-685965,686056-686424,686505-686605,686679-686751,686844-686996	AT1G02990.6 CDS AT1G02990 ID=AT1G02990.6; Parent=AT1G02990; Name=AT1G02990.6; Note=hypothetical protein; Dbxref=PMID:20687615, locus:2024710; computational_description=BEST Arabidopsis thaliana protein match is: CW-type Zinc Finger (TAIR:AT3G62900.1)%3B Has 5847 Blast hits to 4410 proteins in 438 species: Archae - 17%3B Bacteria - 452%3B Metazoa - 2463%3B Fungi - 354%3B Plants - 306%3B Viruses - 11%3B Other Eukaryotes - 2244 (source: NCBI BLink).; locus_type=protein_coding
AT1G02990.5	chr1:000682069	0.0	C/682069-682092,682243-682403,682732-682892,683175-683317,683402-684777,684864-685965,686056-686424,686505-686605,686679-686751,686844-686996	AT1G02990.5 CDS AT1G02990 ID=AT1G02990.5; Parent=AT1G02990; Name=AT1G02990.5; Note=hypothetical protein; computational_description=BEST Arabidopsis thaliana protein match is: CW-type Zinc Finger (TAIR:AT3G62900.1)%3B Has 5847 Blast hits to 4410 proteins in 438 species: Archae - 17%3B Bacteria - 452%3B Metazoa - 2463%3B Fungi - 354%3B Plants - 306%3B Viruses - 11%3B Other Eukaryotes - 2244 (source: NCBI BLink).; Dbxref=PMID:20687615, locus:2024710; locus_type=protein_coding
AT1G02990.1	chr1:000683065	0.0	C/683065-683077,683175-683317,683402-684777,684864-685965,686056-686424,686505-686597,686679-686751,686844-686884	AT1G02990.1 CDS AT1G02990 ID=AT1G02990.1; Parent=AT1G02990; Name=AT1G02990.1; Note=hypothetical protein; conf_class=1; computational_description=BEST Arabidopsis thaliana protein match is: CW-type Zinc Finger (TAIR:AT3G62900.1)%3B Has 5847 Blast hits to 4410 proteins in 438 species: Archae - 17%3B Bacteria - 452%3B Metazoa - 2463%3B Fungi - 354%3B Plants - 306%3B Viruses - 11%3B Other Eukaryotes - 2244 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:20687615, locus:2024710; locus_type=protein_coding
AT1G03000.1	chr1:000688057	0.0	C/688057-688146,688281-688364,688458-688602,688679-688950,689036-689158,689251-689409,689532-689813,689985-690173,690399-690579,690757-690898,691121-691364,691443-692078,692175-692453	AT1G03000.1 CDS AT1G03000 ID=AT1G03000.1; Parent=AT1G03000; Name=AT1G03000.1; Note=peroxin 6; curator_summary=Encodes an apparent ATPase similar to yeast and human protein required for peroxisomal biogenesis. May facilitate recycling of PEX5%2C the peroxisomal matrix protein receptor%2C and thereby promote peroxisomal matrix protein import.; conf_class=2; symbol=PEX6; full_name=peroxin 6; computational_description=peroxin 6 (PEX6)%3B FUNCTIONS IN: nucleoside-triphosphatase activity%2C ATPase activity%2C nucleotide binding%2C ATP binding%3B INVOLVED IN: protein import into peroxisome matrix%2C fatty acid beta-oxidation%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: ATPase%2C AAA-type%2C core (InterPro:IPR003959)%2C ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C ATPase%2C AAA-type%2C conserved site (InterPro:IPR003960)%3B BEST Arabidopsis thaliana protein match is: ATPase%2C AAA-type%2C CDC48 protein (TAIR:AT5G03340.1)%3B Has 36036 Blast hits to 31766 proteins in 3165 species: Archae - 1626%3B Bacteria - 13920%3B Metazoa - 5344%3B Fungi - 4031%3B Plants - 3389%3B Viruses - 33%3B Other Eukaryotes - 7693 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11378467, PMID:11389979, PMID:12913156, PMID:14671017, PMID:14745029, PMID:15787611, PMID:10961948, PMID:16615871, PMID:17478547, PMID:17544464, PMID:19246395, PMID:20687615, PMID:20969679, PMID:21487094, PMID:23150599, PMID:25214533, locus:2007574; locus_type=protein_coding
AT1G03010.1	chr1:000693480	0.0	W/693480-693571,694117-694183,694280-695476,695547-695793,695887-696188	AT1G03010.1 CDS AT1G03010 ID=AT1G03010.1; Parent=AT1G03010; Name=AT1G03010.1; Note=Phototropic-responsive NPH3 family protein; conf_class=2; computational_description=Phototropic-responsive NPH3 family protein%3B FUNCTIONS IN: signal transducer activity%3B INVOLVED IN: response to light stimulus%2C pollen tube growth%3B EXPRESSED IN: leaf apex%2C inflorescence meristem%2C cauline leaf%2C root%2C flower%3B EXPRESSED DURING: M germinated pollen stage%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249)%2C BTB/POZ fold (InterPro:IPR011333)%2C BTB/POZ-like (InterPro:IPR000210)%3B BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT2G47860.1)%3B Has 882 Blast hits to 854 proteins in 29 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 10%3B Fungi - 0%3B Plants - 870%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15749712, PMID:18230180, PMID:19714218, locus:2007564; locus_type=protein_coding
AT1G03010.2	chr1:000694028	0.0	W/694028-694038,694117-694183,694280-695476,695547-695793,695887-696188	AT1G03010.2 CDS AT1G03010 ID=AT1G03010.2; Parent=AT1G03010; Name=AT1G03010.2; Note=Phototropic-responsive NPH3 family protein; computational_description=Phototropic-responsive NPH3 family protein%3B FUNCTIONS IN: signal transducer activity%3B INVOLVED IN: response to light stimulus%2C pollen tube growth%3B EXPRESSED IN: leaf apex%2C inflorescence meristem%2C cauline leaf%2C root%2C flower%3B EXPRESSED DURING: M germinated pollen stage%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249)%2C BTB/POZ fold (InterPro:IPR011333)%2C BTB/POZ-like (InterPro:IPR000210)%3B BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT2G47860.1)%3B Has 882 Blast hits to 854 proteins in 29 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 10%3B Fungi - 0%3B Plants - 870%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; Dbxref=PMID:15749712, PMID:18230180, PMID:19714218, locus:2007564; locus_type=protein_coding
AT1G03010.3	chr1:000694028	0.0	W/694028-694183,694280-695476,695547-695793,695887-696188	AT1G03010.3 CDS AT1G03010 ID=AT1G03010.3; Parent=AT1G03010; Name=AT1G03010.3; Note=Phototropic-responsive NPH3 family protein; computational_description=Phototropic-responsive NPH3 family protein%3B FUNCTIONS IN: signal transducer activity%3B INVOLVED IN: response to light stimulus%2C pollen tube growth%3B EXPRESSED IN: leaf apex%2C inflorescence meristem%2C cauline leaf%2C root%2C flower%3B EXPRESSED DURING: M germinated pollen stage%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249)%2C BTB/POZ fold (InterPro:IPR011333)%2C BTB/POZ-like (InterPro:IPR000210)%3B BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT2G47860.1)%3B Has 882 Blast hits to 854 proteins in 29 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 10%3B Fungi - 0%3B Plants - 870%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; Dbxref=PMID:15749712, PMID:18230180, PMID:19714218, locus:2007564; locus_type=protein_coding
AT1TE02260	chr1:000696359	0.0	C/696359-696446	AT1TE02260 transposable_element AT1TE02260 ID=AT1TE02260; Name=AT1TE02260; Alias=ATREP2A
AT1TE02265	chr1:000696447	0.0	C/696447-697163,697164-697372	AT1TE02265 transposable_element AT1TE02265 ID=AT1TE02265; Name=AT1TE02265; Alias=ATREP1
AT1TE02270	chr1:000697387	0.0	W/697387-697951	AT1TE02270 transposable_element AT1TE02270 ID=AT1TE02270; Name=AT1TE02270; Alias=ATREP10D
AT1TE02275	chr1:000697952	0.0	W/697952-698088	AT1TE02275 transposable_element AT1TE02275 ID=AT1TE02275; Name=AT1TE02275; Alias=HELITRONY3
AT1G03020.1	chr1:000698207	0.0	C/698207-698515	AT1G03020.1 CDS AT1G03020 ID=AT1G03020.1; Parent=AT1G03020; Name=AT1G03020.1; Note=Thioredoxin superfamily protein; conf_class=1; computational_description=Thioredoxin superfamily protein%3B FUNCTIONS IN: electron carrier activity%2C arsenate reductase (glutaredoxin) activity%2C protein disulfide oxidoreductase activity%3B INVOLVED IN: cell redox homeostasis%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 7 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Glutaredoxin-like%2C plant II (InterPro:IPR011905)%2C Thioredoxin fold (InterPro:IPR012335)%2C Glutaredoxin (InterPro:IPR002109)%2C Glutaredoxin subgroup (InterPro:IPR014025)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT3G62930.1)%3B Has 1690 Blast hits to 1687 proteins in 285 species: Archae - 0%3B Bacteria - 112%3B Metazoa - 344%3B Fungi - 348%3B Plants - 762%3B Viruses - 0%3B Other Eukaryotes - 124 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12169696, PMID:15632145, PMID:16720602, PMID:17061125, PMID:17031546, locus:2007554; locus_type=protein_coding
AT1G03030.1	chr1:000701621	0.0	W/701621-701681,701775-701875,701976-702019,702106-702183,702276-702468,702567-702597,702679-702737,702828-702901,703012-703098,703195-703256,703353-703381,703482-703568	AT1G03030.1 CDS AT1G03030 ID=AT1G03030.1; Parent=AT1G03030; Name=AT1G03030.1; Note=P-loop containing nucleoside triphosphate hydrolases superfamily protein; conf_class=2; computational_description=P-loop containing nucleoside triphosphate hydrolases superfamily protein%3B FUNCTIONS IN: phosphotransferase activity%2C alcohol group as acceptor%2C kinase activity%2C ATP binding%3B INVOLVED IN: biosynthetic process%2C metabolic process%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Phosphoribulokinase/uridine kinase (InterPro:IPR006083)%2C Uridine kinase (InterPro:IPR000764)%3B Has 3038 Blast hits to 3038 proteins in 1114 species: Archae - 9%3B Bacteria - 2199%3B Metazoa - 179%3B Fungi - 248%3B Plants - 85%3B Viruses - 0%3B Other Eukaryotes - 318 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:20736450, locus:2007544; locus_type=protein_coding
AT1G03030.2	chr1:000701621	0.0	W/701621-701681,701775-701875,701976-702019,702106-702183,702276-702468,702567-702597,702679-702737,702828-702901,703012-703098,703195-703256,703353-703447	AT1G03030.2 CDS AT1G03030 ID=AT1G03030.2; Parent=AT1G03030; Name=AT1G03030.2; Note=P-loop containing nucleoside triphosphate hydrolases superfamily protein; computational_description=P-loop containing nucleoside triphosphate hydrolases superfamily protein%3B FUNCTIONS IN: phosphotransferase activity%2C alcohol group as acceptor%2C kinase activity%2C ATP binding%3B INVOLVED IN: biosynthetic process%2C metabolic process%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Phosphoribulokinase/uridine kinase (InterPro:IPR006083)%2C Uridine kinase (InterPro:IPR000764)%3B Has 3038 Blast hits to 3038 proteins in 1114 species: Archae - 9%3B Bacteria - 2199%3B Metazoa - 179%3B Fungi - 248%3B Plants - 85%3B Viruses - 0%3B Other Eukaryotes - 318 (source: NCBI BLink).; Dbxref=PMID:20736450, locus:2007544; locus_type=protein_coding
AT1G03040.1	chr1:000704279	0.0	C/704279-704494,704588-704668,705064-705129,705302-705367,705534-705656,706101-706457	AT1G03040.1 CDS AT1G03040 ID=AT1G03040.1; Parent=AT1G03040; Name=AT1G03040.1; Note=basic helix-loop-helix (bHLH) DNA-binding superfamily protein; conf_class=2; computational_description=basic helix-loop-helix (bHLH) DNA-binding superfamily protein%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C acetyl-CoA biosynthetic process from pyruvate%3B LOCATED IN: nucleus%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G02590.2)%3B Has 2903 Blast hits to 2897 proteins in 102 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 20%3B Fungi - 0%3B Plants - 2882%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:12679534, PMID:12897250, PMID:14600211, PMID:15287975, locus:2007534; locus_type=protein_coding
AT1G03040.2	chr1:000704279	0.0	C/704279-704494,704588-704668,705064-705129,705302-705367,705534-705641,706101-706457	AT1G03040.2 CDS AT1G03040 ID=AT1G03040.2; Parent=AT1G03040; Name=AT1G03040.2; Note=basic helix-loop-helix (bHLH) DNA-binding superfamily protein; conf_class=2; computational_description=basic helix-loop-helix (bHLH) DNA-binding superfamily protein%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C acetyl-CoA biosynthetic process from pyruvate%3B LOCATED IN: nucleus%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G02590.2)%3B Has 2903 Blast hits to 2897 proteins in 102 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 20%3B Fungi - 0%3B Plants - 2882%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:12679534, PMID:12897250, PMID:14600211, PMID:15287975, locus:2007534; locus_type=protein_coding
AT1G03040.3	chr1:000704279	0.0	C/704279-704668,705064-705129,705302-705367,705534-705656,706101-706457	AT1G03040.3 CDS AT1G03040 ID=AT1G03040.3; Parent=AT1G03040; Name=AT1G03040.3; Note=basic helix-loop-helix (bHLH) DNA-binding superfamily protein; computational_description=basic helix-loop-helix (bHLH) DNA-binding superfamily protein%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C acetyl-CoA biosynthetic process from pyruvate%3B LOCATED IN: nucleus%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G02590.2)%3B Has 2903 Blast hits to 2897 proteins in 102 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 20%3B Fungi - 0%3B Plants - 2882%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; Dbxref=PMID:11118137, PMID:12679534, PMID:12897250, PMID:14600211, PMID:15287975, locus:2007534; locus_type=protein_coding
AT1G03050.1	chr1:000707726	0.0	W/707726-708189,708304-708509,708601-709467,709598-709860	AT1G03050.1 CDS AT1G03050 ID=AT1G03050.1; Parent=AT1G03050; Name=AT1G03050.1; Note=ENTH/ANTH/VHS superfamily protein; conf_class=2; computational_description=ENTH/ANTH/VHS superfamily protein%3B FUNCTIONS IN: phospholipid binding%2C clathrin binding%2C binding%2C phosphatidylinositol binding%3B INVOLVED IN: N-terminal protein myristoylation%2C clathrin coat assembly%3B LOCATED IN: clathrin coat%3B EXPRESSED IN: 9 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%2C C globular stage%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Epsin-like%2C N-terminal (InterPro:IPR013809)%2C ANTH (InterPro:IPR011417)%2C ENTH/VHS (InterPro:IPR008942)%2C Clathrin adaptor%2C phosphoinositide-binding%2C GAT-like (InterPro:IPR014712)%3B BEST Arabidopsis thaliana protein match is: ENTH/ANTH/VHS superfamily protein (TAIR:AT4G02650.1)%3B Has 1509 Blast hits to 1324 proteins in 217 species: Archae - 4%3B Bacteria - 48%3B Metazoa - 522%3B Fungi - 214%3B Plants - 422%3B Viruses - 12%3B Other Eukaryotes - 287 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12912986, PMID:14500793, PMID:18775970, PMID:20736450, locus:2007524; locus_type=protein_coding
AT1G03055.1	chr1:000710102	0.0	C/710102-710136,710241-710333,710695-710801,710955-711016,711092-711184,711263-711408,711505-711763	AT1G03055.1 CDS AT1G03055 ID=AT1G03055.1; Parent=AT1G03055; Name=AT1G03055.1; Note=beta-carotene isomerase D27-like protein; curator_summary=Encodes the ortholog of rice D27. It is plastid-localized and is required for the inhibition of secondary bud outgrowth and operates on a nonmobile precursor upstream of MAX1 in the SL biosynthesis pathway.; conf_class=2; symbol=D27; Alias=AtD27, A. thaliana homolog of rice D27; full_name=DWARF27; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64680.1)%3B Has 143 Blast hits to 143 proteins in 26 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 0%3B Fungi - 0%3B Plants - 122%3B Viruses - 0%3B Other Eukaryotes - 15 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:20226671, PMID:22623516, PMID:24434551, locus:505006097; locus_type=protein_coding
AT1G03055.2	chr1:000710912	0.0	C/710912-711016,711092-711184,711263-711408,711505-711763	AT1G03055.2 CDS AT1G03055 ID=AT1G03055.2; Parent=AT1G03055; Name=AT1G03055.2; Note=beta-carotene isomerase D27-like protein; curator_summary=Encodes the ortholog of rice D27. It is plastid-localized and is required for the inhibition of secondary bud outgrowth and operates on a nonmobile precursor upstream of MAX1 in the SL biosynthesis pathway.; conf_class=2; symbol=D27; Alias=AtD27, A. thaliana homolog of rice D27; full_name=DWARF27; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64680.1)%3B Has 143 Blast hits to 143 proteins in 26 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 0%3B Fungi - 0%3B Plants - 122%3B Viruses - 0%3B Other Eukaryotes - 15 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:20226671, PMID:22623516, PMID:24434551, locus:505006097; locus_type=protein_coding
AT1G03060.1	chr1:000712971	0.0	C/712971-714206,714317-714463,714558-714864,715007-715315,715660-718662,718935-720585,720681-721795,721905-722007,722116-722815,722966-724119,724275-724389,724681-724746,724890-725081,725236-725409,725552-725608,725689-725824,726037-726122,726275-726347,726710-726891	AT1G03060.1 CDS AT1G03060 ID=AT1G03060.1; Parent=AT1G03060; Name=AT1G03060.1; Note=BEACH-DOMAIN HOMOLOG A1; curator_summary=Encodes a WD/BEACH domain protein involved in cell morphogenesis.; conf_class=6; symbol=SPI; Alias=BCHA1, Beach-Domain Homolog A1; full_name=SPIRRIG; computational_description=SPIRRIG (SPI)%3B FUNCTIONS IN: binding%3B INVOLVED IN: signal transduction%2C multidimensional cell growth%2C vacuole organization%2C trichome morphogenesis%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782)%2C Beige/BEACH (InterPro:IPR000409)%2C WD40 repeat%2C conserved site (InterPro:IPR019775)%2C WD40 repeat (InterPro:IPR001680)%2C WD40 repeat-like-containing domain (InterPro:IPR011046)%2C WD40-repeat-containing domain (InterPro:IPR017986)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C Armadillo-type fold (InterPro:IPR016024)%2C WD40 repeat%2C subgroup (InterPro:IPR019781)%3B BEST Arabidopsis thaliana protein match is: Beige/BEACH domain %3BWD domain%2C G-beta repeat protein (TAIR:AT4G02660.1)%3B Has 8491 Blast hits to 6383 proteins in 382 species: Archae - 4%3B Bacteria - 1376%3B Metazoa - 3669%3B Fungi - 1335%3B Plants - 868%3B Viruses - 0%3B Other Eukaryotes - 1239 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:12690443, PMID:14576160, PMID:14672542, PMID:16481336, PMID:18775970, PMID:19392685, PMID:19626137, PMID:20733066, PMID:25618824, locus:2007514; locus_type=protein_coding
AT1G03060.2	chr1:000712971	0.0	C/712971-714206,714317-714463,714558-714864,715007-715315,715660-718662,718935-720585,720681-721795,721905-722007,722116-722815,722966-724119,724275-724389,724681-724746,724890-725081,725236-725409,725552-725608,725689-725824,726037-726122,726275-726344,726710-726891	AT1G03060.2 CDS AT1G03060 ID=AT1G03060.2; Parent=AT1G03060; Name=AT1G03060.2; Note=BEACH-DOMAIN HOMOLOG A1; symbol=SPI; Alias=BCHA1, Beach-Domain Homolog A1; full_name=SPIRRIG; curator_summary=Encodes a WD/BEACH domain protein involved in cell morphogenesis.; computational_description=SPIRRIG (SPI)%3B FUNCTIONS IN: binding%3B INVOLVED IN: signal transduction%2C multidimensional cell growth%2C vacuole organization%2C trichome morphogenesis%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782)%2C Beige/BEACH (InterPro:IPR000409)%2C WD40 repeat%2C conserved site (InterPro:IPR019775)%2C WD40 repeat (InterPro:IPR001680)%2C WD40 repeat-like-containing domain (InterPro:IPR011046)%2C WD40-repeat-containing domain (InterPro:IPR017986)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C Armadillo-type fold (InterPro:IPR016024)%2C WD40 repeat%2C subgroup (InterPro:IPR019781)%3B BEST Arabidopsis thaliana protein match is: Beige/BEACH domain %3BWD domain%2C G-beta repeat protein (TAIR:AT4G02660.1)%3B Has 8491 Blast hits to 6383 proteins in 382 species: Archae - 4%3B Bacteria - 1376%3B Metazoa - 3669%3B Fungi - 1335%3B Plants - 868%3B Viruses - 0%3B Other Eukaryotes - 1239 (source: NCBI BLink).; Dbxref=PMID:12690443, PMID:14576160, PMID:14672542, PMID:16481336, PMID:18775970, PMID:19392685, PMID:19626137, PMID:20733066, PMID:25618824, locus:2007514; locus_type=protein_coding
AT1G03060.3	chr1:000712971	0.0	C/712971-714206,714317-714463,714558-714864,715007-715315,715660-718415,718503-718662,718935-720585,720681-721795,721905-722007,722116-722815,722966-724119,724275-724389,724681-724746,724890-725081,725236-725409,725552-725608,725689-725824,726037-726122,726275-726344,726710-726891	AT1G03060.3 CDS AT1G03060 ID=AT1G03060.3; Parent=AT1G03060; Name=AT1G03060.3; Note=BEACH-DOMAIN HOMOLOG A1; symbol=SPI; Alias=BCHA1, Beach-Domain Homolog A1; full_name=SPIRRIG; curator_summary=Encodes a WD/BEACH domain protein involved in cell morphogenesis.; computational_description=SPIRRIG (SPI)%3B FUNCTIONS IN: binding%3B INVOLVED IN: signal transduction%2C multidimensional cell growth%2C vacuole organization%2C trichome morphogenesis%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782)%2C Beige/BEACH (InterPro:IPR000409)%2C WD40 repeat%2C conserved site (InterPro:IPR019775)%2C WD40 repeat (InterPro:IPR001680)%2C WD40 repeat-like-containing domain (InterPro:IPR011046)%2C WD40-repeat-containing domain (InterPro:IPR017986)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C Armadillo-type fold (InterPro:IPR016024)%2C WD40 repeat%2C subgroup (InterPro:IPR019781)%3B BEST Arabidopsis thaliana protein match is: Beige/BEACH domain %3BWD domain%2C G-beta repeat protein (TAIR:AT4G02660.1)%3B Has 8491 Blast hits to 6383 proteins in 382 species: Archae - 4%3B Bacteria - 1376%3B Metazoa - 3669%3B Fungi - 1335%3B Plants - 868%3B Viruses - 0%3B Other Eukaryotes - 1239 (source: NCBI BLink).; Dbxref=PMID:12690443, PMID:14576160, PMID:14672542, PMID:16481336, PMID:18775970, PMID:19392685, PMID:19626137, PMID:20733066, PMID:25618824, locus:2007514; locus_type=protein_coding
AT1G03060.4	chr1:000712971	0.0	C/712971-714206,714317-714463,714558-714864,715007-715315,715660-718415,718503-718662,718935-720585,720681-721795,721905-722007,722116-722815,722966-724119,724275-724389,724681-724746,724890-725081,725236-725409,725552-725608,725689-725824,726037-726122,726275-726347,726710-726891	AT1G03060.4 CDS AT1G03060 ID=AT1G03060.4; Parent=AT1G03060; Name=AT1G03060.4; Note=BEACH-DOMAIN HOMOLOG A1; symbol=SPI; Alias=BCHA1, Beach-Domain Homolog A1; full_name=SPIRRIG; curator_summary=Encodes a WD/BEACH domain protein involved in cell morphogenesis.; computational_description=SPIRRIG (SPI)%3B FUNCTIONS IN: binding%3B INVOLVED IN: signal transduction%2C multidimensional cell growth%2C vacuole organization%2C trichome morphogenesis%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782)%2C Beige/BEACH (InterPro:IPR000409)%2C WD40 repeat%2C conserved site (InterPro:IPR019775)%2C WD40 repeat (InterPro:IPR001680)%2C WD40 repeat-like-containing domain (InterPro:IPR011046)%2C WD40-repeat-containing domain (InterPro:IPR017986)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C Armadillo-type fold (InterPro:IPR016024)%2C WD40 repeat%2C subgroup (InterPro:IPR019781)%3B BEST Arabidopsis thaliana protein match is: Beige/BEACH domain %3BWD domain%2C G-beta repeat protein (TAIR:AT4G02660.1)%3B Has 8491 Blast hits to 6383 proteins in 382 species: Archae - 4%3B Bacteria - 1376%3B Metazoa - 3669%3B Fungi - 1335%3B Plants - 868%3B Viruses - 0%3B Other Eukaryotes - 1239 (source: NCBI BLink).; Dbxref=PMID:12690443, PMID:14576160, PMID:14672542, PMID:16481336, PMID:18775970, PMID:19392685, PMID:19626137, PMID:20733066, PMID:25618824, locus:2007514; locus_type=protein_coding
AT1TE02360	chr1:000726695	0.0	C/726695-726837	AT1TE02360 transposable_element AT1TE02360 ID=AT1TE02360; Name=AT1TE02360; Alias=ATENSPM1A
AT1TE02365	chr1:000728985	0.0	C/728985-729267	AT1TE02365 transposable_element AT1TE02365 ID=AT1TE02365; Name=AT1TE02365; Alias=ATREP11
AT1G03070.1	chr1:000730148	0.0	W/730148-730415,730497-730610,730916-731073,731176-731379	AT1G03070.1 CDS AT1G03070 ID=AT1G03070.1; Parent=AT1G03070; Name=AT1G03070.1; Note=Bax inhibitor-1 family protein; conf_class=1; Alias=AtLFG4, LFG4, LIFEGUARD 4; computational_description=Bax inhibitor-1 family protein%3B CONTAINS InterPro DOMAIN/s: Inhibitor of apoptosis-promoting Bax1 related (InterPro:IPR006214)%3B BEST Arabidopsis thaliana protein match is: Bax inhibitor-1 family protein (TAIR:AT4G02690.1)%3B Has 5593 Blast hits to 5593 proteins in 1573 species: Archae - 0%3B Bacteria - 3054%3B Metazoa - 856%3B Fungi - 144%3B Plants - 197%3B Viruses - 83%3B Other Eukaryotes - 1259 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:17085506, PMID:17888165, PMID:18775970, PMID:21838868, PMID:23888068, locus:2007509; locus_type=protein_coding
AT1G03070.2	chr1:000730148	0.0	W/730148-730415,730497-730610,730916-731073,731176-731379	AT1G03070.2 CDS AT1G03070 ID=AT1G03070.2; Parent=AT1G03070; Name=AT1G03070.2; Note=Bax inhibitor-1 family protein; conf_class=4; Alias=AtLFG4, LFG4, LIFEGUARD 4; computational_description=Bax inhibitor-1 family protein%3B CONTAINS InterPro DOMAIN/s: Inhibitor of apoptosis-promoting Bax1 related (InterPro:IPR006214)%3B BEST Arabidopsis thaliana protein match is: Bax inhibitor-1 family protein (TAIR:AT4G02690.1)%3B Has 5593 Blast hits to 5593 proteins in 1573 species: Archae - 0%3B Bacteria - 3054%3B Metazoa - 856%3B Fungi - 144%3B Plants - 197%3B Viruses - 83%3B Other Eukaryotes - 1259 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:17085506, PMID:17888165, PMID:18775970, PMID:21838868, PMID:23888068, locus:2007509; locus_type=protein_coding
AT1G03070.3	chr1:000730148	0.0	W/730148-730415,730497-730610,730916-731073,731176-731379	AT1G03070.3 CDS AT1G03070 ID=AT1G03070.3; Parent=AT1G03070; Name=AT1G03070.3; Note=Bax inhibitor-1 family protein; Alias=AtLFG4, LFG4, LIFEGUARD 4; Dbxref=PMID:17085506, PMID:17888165, PMID:18775970, PMID:21838868, PMID:23888068, locus:2007509; computational_description=Bax inhibitor-1 family protein%3B CONTAINS InterPro DOMAIN/s: Inhibitor of apoptosis-promoting Bax1 related (InterPro:IPR006214)%3B BEST Arabidopsis thaliana protein match is: Bax inhibitor-1 family protein (TAIR:AT4G02690.1)%3B Has 5593 Blast hits to 5593 proteins in 1573 species: Archae - 0%3B Bacteria - 3054%3B Metazoa - 856%3B Fungi - 144%3B Plants - 197%3B Viruses - 83%3B Other Eukaryotes - 1259 (source: NCBI BLink).; locus_type=protein_coding
AT1G03080.1	chr1:000731794	0.0	C/731794-732741,732928-737081,737233-737332	AT1G03080.1 CDS AT1G03080 ID=AT1G03080.1; Parent=AT1G03080; Name=AT1G03080.1; Note=kinase interacting (KIP1-like) family protein; conf_class=4; symbol=NET1D; full_name=Networked 1D; computational_description=kinase interacting (KIP1-like) family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053)%2C KIP1-like (InterPro:IPR011684)%3B BEST Arabidopsis thaliana protein match is: Kinase interacting (KIP1-like) family protein (TAIR:AT3G22790.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:16367961, PMID:21284606, PMID:22645532, PMID:22840520, locus:2007569; locus_type=protein_coding
AT1G03080.2	chr1:000731794	0.0	C/731794-732741,732928-737081,737233-737332	AT1G03080.2 CDS AT1G03080 ID=AT1G03080.2; Parent=AT1G03080; Name=AT1G03080.2; Note=kinase interacting (KIP1-like) family protein; symbol=NET1D; full_name=Networked 1D; Dbxref=PMID:16367961, PMID:21284606, PMID:22645532, PMID:22840520, locus:2007569; computational_description=kinase interacting (KIP1-like) family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053)%2C KIP1-like (InterPro:IPR011684)%3B BEST Arabidopsis thaliana protein match is: Kinase interacting (KIP1-like) family protein (TAIR:AT3G22790.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; locus_type=protein_coding
AT1G03080.3	chr1:000731794	0.0	C/731794-732741,732928-737081,737233-737332	AT1G03080.3 CDS AT1G03080 ID=AT1G03080.3; Parent=AT1G03080; Name=AT1G03080.3; Note=kinase interacting (KIP1-like) family protein; symbol=NET1D; full_name=Networked 1D; Dbxref=PMID:16367961, PMID:21284606, PMID:22645532, PMID:22840520, locus:2007569; computational_description=kinase interacting (KIP1-like) family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053)%2C KIP1-like (InterPro:IPR011684)%3B BEST Arabidopsis thaliana protein match is: Kinase interacting (KIP1-like) family protein (TAIR:AT3G22790.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; locus_type=protein_coding
AT1G03090.1	chr1:000739715	0.0	W/739715-740050,740124-740245,740355-740502,740620-740757,740970-741065,741509-741601,741684-741795,741946-742050,742181-742317,742502-742736,742822-742982,743090-743203,743301-743546,743620-743716,743815-743819	AT1G03090.1 CDS AT1G03090 ID=AT1G03090.1; Parent=AT1G03090; Name=AT1G03090.1; Note=methylcrotonyl-CoA carboxylase alpha chain; curator_summary=MCCA is the biotinylated subunit of the dimer MCCase%2C which is involved in leucine degradation. Both subunits are nuclear coded and the active enzyme is located in the mitochondrion.; conf_class=2; symbol=MCCA; computational_description=MCCA%3B FUNCTIONS IN: cobalt ion binding%2C methylcrotonoyl-CoA carboxylase activity%3B INVOLVED IN: leucine catabolic process%3B LOCATED IN: mitochondrion%2C cytosolic ribosome%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Single hybrid motif (InterPro:IPR011053)%2C Biotin/lipoyl attachment (InterPro:IPR000089)%2C Carbamoyl phosphate synthase%2C large subunit%2C N-terminal (InterPro:IPR005481)%2C Carbamoyl phosphate synthetase%2C large subunit%2C ATP-binding (InterPro:IPR005479)%2C PreATP-grasp-like fold (InterPro:IPR016185)%2C Biotin-binding site (InterPro:IPR001882)%2C Biotin carboxylation domain (InterPro:IPR011764)%2C Biotin carboxylase%2C C-terminal (InterPro:IPR005482)%2C ATP-grasp fold (InterPro:IPR011761)%2C ATP-grasp fold%2C subdomain 2 (InterPro:IPR013816)%2C Rudiment single hybrid motif (InterPro:IPR011054)%2C Pre-ATP-grasp fold (InterPro:IPR013817)%3B BEST Arabidopsis thaliana protein match is: acetyl Co-enzyme a carboxylase biotin carboxylase subunit (TAIR:AT5G35360.1)%3B Has 35200 Blast hits to 30603 proteins in 3073 species: Archae - 603%3B Bacteria - 22615%3B Metazoa - 922%3B Fungi - 892%3B Plants - 784%3B Viruses - 0%3B Other Eukaryotes - 9384 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11401427, PMID:11406611, PMID:12753585, PMID:12753580, PMID:14973164, PMID:15821981, PMID:15784138, PMID:15860015, PMID:16514558, PMID:16632591, PMID:18156294, PMID:18053238, PMID:18650403, PMID:18616834, PMID:19291320, PMID:20018591, PMID:21224340, PMID:22211474, locus:2007559; locus_type=protein_coding
AT1G03090.2	chr1:000739715	0.0	W/739715-740050,740124-740245,740355-740502,740620-740757,740970-741065,741148-741207,741509-741601,741684-741795,741946-742050,742181-742317,742502-742736,742822-742982,743090-743203,743301-743546,743620-743716,743815-743819	AT1G03090.2 CDS AT1G03090 ID=AT1G03090.2; Parent=AT1G03090; Name=AT1G03090.2; Note=methylcrotonyl-CoA carboxylase alpha chain; curator_summary=MCCA is the biotinylated subunit of the dimer MCCase%2C which is involved in leucine degradation. Both subunits are nuclear coded and the active enzyme is located in the mitochondrion.; conf_class=2; symbol=MCCA; computational_description=MCCA%3B FUNCTIONS IN: cobalt ion binding%2C methylcrotonoyl-CoA carboxylase activity%3B INVOLVED IN: leucine catabolic process%3B LOCATED IN: mitochondrion%2C cytosolic ribosome%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Single hybrid motif (InterPro:IPR011053)%2C Biotin/lipoyl attachment (InterPro:IPR000089)%2C Carbamoyl phosphate synthase%2C large subunit%2C N-terminal (InterPro:IPR005481)%2C Carbamoyl phosphate synthetase%2C large subunit%2C ATP-binding (InterPro:IPR005479)%2C PreATP-grasp-like fold (InterPro:IPR016185)%2C Biotin-binding site (InterPro:IPR001882)%2C Biotin carboxylation domain (InterPro:IPR011764)%2C Biotin carboxylase%2C C-terminal (InterPro:IPR005482)%2C ATP-grasp fold (InterPro:IPR011761)%2C ATP-grasp fold%2C subdomain 2 (InterPro:IPR013816)%2C Rudiment single hybrid motif (InterPro:IPR011054)%2C Pre-ATP-grasp fold (InterPro:IPR013817)%3B BEST Arabidopsis thaliana protein match is: acetyl Co-enzyme a carboxylase biotin carboxylase subunit (TAIR:AT5G35360.1)%3B Has 35200 Blast hits to 30603 proteins in 3073 species: Archae - 603%3B Bacteria - 22615%3B Metazoa - 922%3B Fungi - 892%3B Plants - 784%3B Viruses - 0%3B Other Eukaryotes - 9384 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11401427, PMID:11406611, PMID:12753585, PMID:12753580, PMID:14973164, PMID:15821981, PMID:15784138, PMID:15860015, PMID:16514558, PMID:16632591, PMID:18156294, PMID:18053238, PMID:18650403, PMID:18616834, PMID:19291320, PMID:20018591, PMID:21224340, PMID:22211474, locus:2007559; locus_type=protein_coding
AT1G04157.1	chr1:000742298	0.0	C/742298-742522	AT1G04157.1 antisense_lncRNA AT1G04157 ID=AT1G04157.1; Parent=AT1G04157; Name=AT1G04157.1; description=Natural antisense transcript overlaps with AT1G03090; Note=Natural antisense transcript overlaps with AT1G03090; locus_type=antisense_long_noncoding_rna
AT1G03100.1	chr1:000744026	0.0	C/744026-746407	AT1G03100.1 CDS AT1G03100 ID=AT1G03100.1; Parent=AT1G03100; Name=AT1G03100.1; Note=Pentatricopeptide repeat (PPR) superfamily protein; conf_class=1; computational_description=Pentatricopeptide repeat (PPR) superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G17616.1)%3B Has 9904 Blast hits to 5133 proteins in 176 species: Archae - 0%3B Bacteria - 34%3B Metazoa - 111%3B Fungi - 31%3B Plants - 9502%3B Viruses - 0%3B Other Eukaryotes - 226 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12782738, locus:2007549; locus_type=protein_coding
AT1G04163.1	chr1:000744724	0.0	W/744724-746147	AT1G04163.1 antisense_lncRNA AT1G04163 ID=AT1G04163.1; Parent=AT1G04163; Name=AT1G04163.1; description=Natural antisense transcript overlaps with AT1G03100; Note=Natural antisense transcript overlaps with AT1G03100; locus_type=antisense_long_noncoding_rna
AT1G03103.1	chr1:000747219	0.0	W/747219-747531,747622-747726,747858-747955	AT1G03103.1 CDS AT1G03103 ID=AT1G03103.1; Parent=AT1G03103; Name=AT1G03103.1; Note=Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; conf_class=1; computational_description=Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: lipid transport%3B LOCATED IN: membrane%3B CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140)%2C Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612)%2C Plant lipid transfer protein/hydrophobic protein%2C helical domain (InterPro:IPR013770)%3B BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT3G22600.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11152613, PMID:20032078, locus:1006230669; locus_type=protein_coding
AT1G03106.1	chr1:000748442	0.0	C/748442-748639	AT1G03106.1 CDS AT1G03106 ID=AT1G03106.1; Parent=AT1G03106; Name=AT1G03106.1; Note=hypothetical protein; conf_class=1; computational_description=unknown protein%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16500993, locus:1006230670; locus_type=protein_coding
AT1G03110.1	chr1:000749359	0.0	W/749359-749495,749785-749949,750118-750298,750416-750472,750557-750627,750796-750874,750957-751016,751120-751223,751297-751357,751428-751796	AT1G03110.1 CDS AT1G03110 ID=AT1G03110.1; Parent=AT1G03110; Name=AT1G03110.1; Note=Transducin/WD40 repeat-like superfamily protein; curator_summary=Encodes a gene involved in the modification of nucleosides in tRNA. Mutants have no 7-methylguanosine.; conf_class=2; symbol=TRM82; Alias=AtTRM82; full_name=tRNA modification 82; computational_description=Transducin/WD40 repeat-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782)%2C WD40 repeat-like-containing domain (InterPro:IPR011046)%2C WD40 repeat%2C conserved site (InterPro:IPR019775)%2C WD40-repeat-containing domain (InterPro:IPR017986)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C WD40 repeat (InterPro:IPR001680)%2C WD40 repeat%2C subgroup (InterPro:IPR019781)%3B BEST Arabidopsis thaliana protein match is: Coatomer%2C alpha subunit (TAIR:AT2G21390.1)%3B Has 13545 Blast hits to 7977 proteins in 481 species: Archae - 46%3B Bacteria - 4157%3B Metazoa - 4042%3B Fungi - 2887%3B Plants - 1145%3B Viruses - 0%3B Other Eukaryotes - 1268 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15695462, PMID:18775970, PMID:20836892, locus:2007539; locus_type=protein_coding
AT1G03120.1	chr1:000752271	0.0	W/752271-752660,752982-753140	AT1G03120.1 CDS AT1G03120 ID=AT1G03120.1; Parent=AT1G03120; Name=AT1G03120.1; Note=responsive to abscisic acid 28; curator_summary=Atrab28 plays a role in the ion cell balance during late embryogenesis and germination.; conf_class=2; symbol=RAB28; Alias=ATRAB28, responsive to abscisic acid 28; full_name=responsive to abscisic acid 28; computational_description=responsive to abscisic acid 28 (RAB28)%3B CONTAINS InterPro DOMAIN/s: Seed maturation protein (InterPro:IPR007011)%3B BEST Arabidopsis thaliana protein match is: Seed maturation protein (TAIR:AT3G22490.1)%3B Has 159 Blast hits to 126 proteins in 17 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1%3B Fungi - 0%3B Plants - 157%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10412913, PMID:12175017, PMID:18318901, PMID:25005920, locus:2007529; locus_type=protein_coding
AT1G03120.2	chr1:000752271	0.0	W/752271-752678	AT1G03120.2 CDS AT1G03120 ID=AT1G03120.2; Parent=AT1G03120; Name=AT1G03120.2; Note=responsive to abscisic acid 28; symbol=RAB28; Alias=ATRAB28, responsive to abscisic acid 28; full_name=responsive to abscisic acid 28; curator_summary=Atrab28 plays a role in the ion cell balance during late embryogenesis and germination.; computational_description=responsive to abscisic acid 28 (RAB28)%3B CONTAINS InterPro DOMAIN/s: Seed maturation protein (InterPro:IPR007011)%3B BEST Arabidopsis thaliana protein match is: Seed maturation protein (TAIR:AT3G22490.1)%3B Has 159 Blast hits to 126 proteins in 17 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1%3B Fungi - 0%3B Plants - 157%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; Dbxref=PMID:10412913, PMID:12175017, PMID:18318901, PMID:25005920, locus:2007529; locus_type=protein_coding
AT1G03130.1	chr1:000753528	0.0	C/753528-754142	AT1G03130.1 CDS AT1G03130 ID=AT1G03130.1; Parent=AT1G03130; Name=AT1G03130.1; Note=photosystem I subunit D-2; curator_summary=Encodes a protein predicted by sequence similarity with spinach PsaD to be photosystem I reaction center subunit II (PsaD2); conf_class=1; symbol=PSAD-2; full_name=photosystem I subunit D-2; computational_description=photosystem I subunit D-2 (PSAD-2)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: photosynthesis%3B LOCATED IN: in 6 components%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Photosystem I protein PsaD (InterPro:IPR003685)%3B BEST Arabidopsis thaliana protein match is: photosystem I subunit D-1 (TAIR:AT4G02770.1)%3B Has 509 Blast hits to 509 proteins in 136 species: Archae - 0%3B Bacteria - 143%3B Metazoa - 0%3B Fungi - 0%3B Plants - 165%3B Viruses - 3%3B Other Eukaryotes - 198 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11826309, PMID:12794067, PMID:14576160, PMID:14730673, PMID:14729914, PMID:14996217, PMID:15322131, PMID:16299171, PMID:16463051, PMID:16927206, PMID:18178671, PMID:18557832, PMID:18650403, PMID:18633119, PMID:20392519, PMID:23281391, locus:2007519; locus_type=protein_coding
AT1G03140.1	chr1:000754471	0.0	C/754471-754890,755381-756223	AT1G03140.1 CDS AT1G03140 ID=AT1G03140.1; Parent=AT1G03140; Name=AT1G03140.1; Note=splicing factor Prp18 family protein; conf_class=2; computational_description=splicing factor Prp18 family protein%3B INVOLVED IN: RNA splicing%3B LOCATED IN: spliceosomal complex%3B EXPRESSED IN: male gametophyte%2C cultured cell%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%3B CONTAINS InterPro DOMAIN/s: Pre-mRNA processing factor 4 (PRP4) like (InterPro:IPR014906)%2C Splicing factor motif (InterPro:IPR003648)%2C Prp18 (InterPro:IPR004098)%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54590.1)%3B Has 624 Blast hits to 613 proteins in 206 species: Archae - 0%3B Bacteria - 5%3B Metazoa - 235%3B Fungi - 175%3B Plants - 58%3B Viruses - 0%3B Other Eukaryotes - 151 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18650403, PMID:18775970, PMID:23877244, locus:2007589; locus_type=protein_coding
AT1G03150.1	chr1:000756461	0.0	W/756461-756538,756645-756735,757554-757686,757937-758006,758199-758259,758350-758441	AT1G03150.1 CDS AT1G03150 ID=AT1G03150.1; Parent=AT1G03150; Name=AT1G03150.1; Note=Acyl-CoA N-acyltransferases (NAT) superfamily protein; conf_class=2; computational_description=Acyl-CoA N-acyltransferases (NAT) superfamily protein%3B FUNCTIONS IN: N-acetyltransferase activity%3B INVOLVED IN: metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase%2C C-terminal (InterPro:IPR022610)%2C GCN5-related N-acetyltransferase (InterPro:IPR000182)%2C Acyl-CoA N-acyltransferase (InterPro:IPR016181)%3B BEST Arabidopsis thaliana protein match is: Acyl-CoA N-acyltransferases (NAT) superfamily protein (TAIR:AT5G13780.1)%3B Has 2433 Blast hits to 2433 proteins in 772 species: Archae - 233%3B Bacteria - 716%3B Metazoa - 629%3B Fungi - 398%3B Plants - 148%3B Viruses - 0%3B Other Eukaryotes - 309 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18650403, locus:2007584; locus_type=protein_coding
AT1TE02460	chr1:000758410	0.0	W/758410-758534	AT1TE02460 transposable_element AT1TE02460 ID=AT1TE02460; Name=AT1TE02460; Alias=HELITRONY1A
AT1TE02465	chr1:000758535	0.0	W/758535-759282,759283-760315,760001-760505	AT1TE02465 transposable_element AT1TE02465 ID=AT1TE02465; Name=AT1TE02465; Alias=ATREP5
AT1TE02470	chr1:000760506	0.0	W/760506-760660	AT1TE02470 transposable_element AT1TE02470 ID=AT1TE02470; Name=AT1TE02470; Alias=ATREP3
AT1G04167.1	chr1:000760884	0.0	C/760884-761099	AT1G04167.1 lnc_RNA AT1G04167 ID=AT1G04167.1; Parent=AT1G04167; Name=AT1G04167.1; locus_type=long_noncoding_rna
AT1G03160.1	chr1:000761321	0.0	W/761321-761810,761886-762391,762510-762578,763013-763210,763299-763430,763980-764066,764157-764597,764699-764866,765025-765255,765485-765600,765753-766053	AT1G03160.1 CDS AT1G03160 ID=AT1G03160.1; Parent=AT1G03160; Name=AT1G03160.1; Note=FZO-like protein; curator_summary=A new plant-specific member of the dynamin superfamily%3B defines a new protein class within the dynamin superfamily of membrane remodeling GTPases that regulates organization of the thylakoid network in plants. Targeted to chloroplasts and associated with thylakoid and envelope membranes as punctate structures. Knockout mutants have abnormalities in chloroplast and thylakoid morphology%2C including disorganized grana stacks and alterations in the relative proportions of grana and stroma thylakoids. Overexpression of FZL-GFP also conferred defects in thylakoid organization.; conf_class=2; symbol=FZL; full_name=FZO-like; computational_description=FZO-like (FZL)%3B FUNCTIONS IN: thiamin-phosphate diphosphorylase activity%2C GTP binding%3B INVOLVED IN: vegetative to reproductive phase transition of meristem%2C thylakoid membrane organization%3B LOCATED IN: chloroplast membrane%2C chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Thiamine monophosphate synthase (InterPro:IPR003733)%2C GTP-binding protein%2C HSR1-related (InterPro:IPR002917)%3B Has 4318 Blast hits to 3768 proteins in 1124 species: Archae - 53%3B Bacteria - 3501%3B Metazoa - 428%3B Fungi - 84%3B Plants - 66%3B Viruses - 0%3B Other Eukaryotes - 186 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:16617119, PMID:16916443, PMID:23963675, locus:2007579; locus_type=protein_coding
AT1G03160.2	chr1:000761321	0.0	W/761321-761810,761886-762391,762510-762578,763013-763210,763299-763430,763980-764066,764157-764597,764699-764931,765025-765091	AT1G03160.2 CDS AT1G03160 ID=AT1G03160.2; Parent=AT1G03160; Name=AT1G03160.2; Note=FZO-like protein; curator_summary=A new plant-specific member of the dynamin superfamily%3B defines a new protein class within the dynamin superfamily of membrane remodeling GTPases that regulates organization of the thylakoid network in plants. Targeted to chloroplasts and associated with thylakoid and envelope membranes as punctate structures. Knockout mutants have abnormalities in chloroplast and thylakoid morphology%2C including disorganized grana stacks and alterations in the relative proportions of grana and stroma thylakoids. Overexpression of FZL-GFP also conferred defects in thylakoid organization.; conf_class=2; symbol=FZL; full_name=FZO-like; computational_description=FZO-like (FZL)%3B FUNCTIONS IN: thiamin-phosphate diphosphorylase activity%2C GTP binding%3B INVOLVED IN: vegetative to reproductive phase transition of meristem%2C thylakoid membrane organization%3B LOCATED IN: chloroplast membrane%2C chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Thiamine monophosphate synthase (InterPro:IPR003733)%2C GTP-binding protein%2C HSR1-related (InterPro:IPR002917)%3B Has 4318 Blast hits to 3768 proteins in 1124 species: Archae - 53%3B Bacteria - 3501%3B Metazoa - 428%3B Fungi - 84%3B Plants - 66%3B Viruses - 0%3B Other Eukaryotes - 186 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:16617119, PMID:16916443, PMID:23963675, locus:2007579; locus_type=protein_coding
AT1G03160.3	chr1:000761321	0.0	W/761321-761810,761886-762391,762510-762578,763013-763210,763299-763430,763980-764066,764157-764597,764699-764831,765025-765047	AT1G03160.3 CDS AT1G03160 ID=AT1G03160.3; Parent=AT1G03160; Name=AT1G03160.3; Note=FZO-like protein; symbol=FZL; full_name=FZO-like; curator_summary=A new plant-specific member of the dynamin superfamily%3B defines a new protein class within the dynamin superfamily of membrane remodeling GTPases that regulates organization of the thylakoid network in plants. Targeted to chloroplasts and associated with thylakoid and envelope membranes as punctate structures. Knockout mutants have abnormalities in chloroplast and thylakoid morphology%2C including disorganized grana stacks and alterations in the relative proportions of grana and stroma thylakoids. Overexpression of FZL-GFP also conferred defects in thylakoid organization.; computational_description=FZO-like (FZL)%3B FUNCTIONS IN: thiamin-phosphate diphosphorylase activity%2C GTP binding%3B INVOLVED IN: vegetative to reproductive phase transition of meristem%2C thylakoid membrane organization%3B LOCATED IN: chloroplast membrane%2C chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Thiamine monophosphate synthase (InterPro:IPR003733)%2C GTP-binding protein%2C HSR1-related (InterPro:IPR002917)%3B Has 4318 Blast hits to 3768 proteins in 1124 species: Archae - 53%3B Bacteria - 3501%3B Metazoa - 428%3B Fungi - 84%3B Plants - 66%3B Viruses - 0%3B Other Eukaryotes - 186 (source: NCBI BLink).; Dbxref=PMID:14576160, PMID:16617119, PMID:16916443, PMID:23963675, locus:2007579; locus_type=protein_coding
AT1G03160.4	chr1:000761321	0.0	W/761321-761810,761886-762391,762510-762578,763013-763210,763299-763430,764157-764597,764699-764866,765025-765255,765485-765600,765753-766053	AT1G03160.4 CDS AT1G03160 ID=AT1G03160.4; Parent=AT1G03160; Name=AT1G03160.4; Note=FZO-like protein; symbol=FZL; full_name=FZO-like; curator_summary=A new plant-specific member of the dynamin superfamily%3B defines a new protein class within the dynamin superfamily of membrane remodeling GTPases that regulates organization of the thylakoid network in plants. Targeted to chloroplasts and associated with thylakoid and envelope membranes as punctate structures. Knockout mutants have abnormalities in chloroplast and thylakoid morphology%2C including disorganized grana stacks and alterations in the relative proportions of grana and stroma thylakoids. Overexpression of FZL-GFP also conferred defects in thylakoid organization.; computational_description=FZO-like (FZL)%3B FUNCTIONS IN: thiamin-phosphate diphosphorylase activity%2C GTP binding%3B INVOLVED IN: vegetative to reproductive phase transition of meristem%2C thylakoid membrane organization%3B LOCATED IN: chloroplast membrane%2C chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Thiamine monophosphate synthase (InterPro:IPR003733)%2C GTP-binding protein%2C HSR1-related (InterPro:IPR002917)%3B Has 4318 Blast hits to 3768 proteins in 1124 species: Archae - 53%3B Bacteria - 3501%3B Metazoa - 428%3B Fungi - 84%3B Plants - 66%3B Viruses - 0%3B Other Eukaryotes - 186 (source: NCBI BLink).; Dbxref=PMID:14576160, PMID:16617119, PMID:16916443, PMID:23963675, locus:2007579; locus_type=protein_coding
AT1G03165.1	chr1:000766363	0.0	W/766363-766380,767142-767324	AT1G03165.1 CDS AT1G03165 ID=AT1G03165.1; Parent=AT1G03165; Name=AT1G03165.1; Note=hypothetical protein; locus_type=protein_coding
AT1G04173.1	chr1:000767037	0.0	C/767037-767385	AT1G04173.1 lnc_RNA AT1G04173 ID=AT1G04173.1; Parent=AT1G04173; Name=AT1G04173.1; locus_type=long_noncoding_rna
AT1G03170.1	chr1:000769805	0.0	W/769805-770527	AT1G03170.1 CDS AT1G03170 ID=AT1G03170.1; Parent=AT1G03170; Name=AT1G03170.1; Note=FANTASTIC four-like protein (DUF3049); curator_summary=A member of the FAF family proteins encoded by the FANTASTIC FOUR (FAF) genes: AT4G02810 (FAF1)%2C AT1G03170 (FAF2)%2C AT5G19260 (FAF3) and AT3G06020 (FAF4). FAFs have the potential to regulate shoot meristem size in Arabidopsis thaliana. FAFs can repress WUS%2C which ultimately leads to an arrest of meristem activity in FAF overexpressing lines.; conf_class=1; symbol=FAF2; Alias=FTM5, FLORAL TRANSITION AT THE MERISTEM5; full_name=FANTASTIC FOUR 2; computational_description=Protein of unknown function (DUF3049)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3049 (InterPro:IPR021410)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3049) (TAIR:AT4G02810.1)%3B Has 91 Blast hits to 91 proteins in 14 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 2%3B Plants - 89%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:21176196, PMID:22319055, locus:2014560; locus_type=protein_coding
AT1G03180.1	chr1:000773543	0.0	W/773543-773691,774096-774153,774231-774539,774652-774700,774785-774879,774968-775047,775122-775179	AT1G03180.1 CDS AT1G03180 ID=AT1G03180.1; Parent=AT1G03180; Name=AT1G03180.1; Note=non-structural protein; conf_class=1; computational_description=unknown protein%3B Has 36 Blast hits to 36 proteins in 15 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 3%3B Fungi - 0%3B Plants - 33%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:18315867, PMID:18775970, locus:2014550; locus_type=protein_coding
AT1G03180.5	chr1:000773543	0.0	W/773543-773691,774096-774153,774231-774539,774652-774700,774785-774879,774968-775047,775122-775179	AT1G03180.5 CDS AT1G03180 ID=AT1G03180.5; Parent=AT1G03180; Name=AT1G03180.5; Note=non-structural protein; Dbxref=PMID:18315867, PMID:18775970, locus:2014550; computational_description=unknown protein%3B Has 36 Blast hits to 36 proteins in 15 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 3%3B Fungi - 0%3B Plants - 33%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; locus_type=protein_coding
AT1G03180.2	chr1:000773989	0.0	W/773989-774153,774231-774539,774652-774700,774785-774879,774968-775047,775122-775179	AT1G03180.2 CDS AT1G03180 ID=AT1G03180.2; Parent=AT1G03180; Name=AT1G03180.2; Note=non-structural protein; conf_class=1; computational_description=unknown protein%3B Has 36 Blast hits to 36 proteins in 15 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 3%3B Fungi - 0%3B Plants - 33%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:18315867, PMID:18775970, locus:2014550; locus_type=protein_coding
AT1G03180.3	chr1:000774282	0.0	W/774282-774539,774652-774700,774785-774879,774968-775047,775122-775179	AT1G03180.3 CDS AT1G03180 ID=AT1G03180.3; Parent=AT1G03180; Name=AT1G03180.3; Note=non-structural protein; computational_description=unknown protein%3B Has 36 Blast hits to 36 proteins in 15 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 3%3B Fungi - 0%3B Plants - 33%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=PMID:18315867, PMID:18775970, locus:2014550; locus_type=protein_coding
AT1G03180.4	chr1:000774282	0.0	W/774282-774539,774652-774700,774785-774879,774968-775047,775122-775179	AT1G03180.4 CDS AT1G03180 ID=AT1G03180.4; Parent=AT1G03180; Name=AT1G03180.4; Note=non-structural protein; computational_description=unknown protein%3B Has 36 Blast hits to 36 proteins in 15 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 3%3B Fungi - 0%3B Plants - 33%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=PMID:18315867, PMID:18775970, locus:2014550; locus_type=protein_coding
AT1G03180.6	chr1:000774282	0.0	W/774282-774539,774652-774700,774785-774879,774968-775047,775122-775179	AT1G03180.6 CDS AT1G03180 ID=AT1G03180.6; Parent=AT1G03180; Name=AT1G03180.6; Note=non-structural protein; computational_description=unknown protein%3B Has 36 Blast hits to 36 proteins in 15 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 3%3B Fungi - 0%3B Plants - 33%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=PMID:18315867, PMID:18775970, locus:2014550; locus_type=protein_coding
AT1G03190.1	chr1:000775822	0.0	W/775822-776355,776482-776762,777155-777237,777336-777739,777872-778065,778153-778333,778486-778610,778807-778896,779002-779080,779174-779250,779538-779646,779744-779863	AT1G03190.1 CDS AT1G03190 ID=AT1G03190.1; Parent=AT1G03190; Name=AT1G03190.1; Note=RAD3-like DNA-binding helicase protein; curator_summary=UV damage and heat induce a common stress response in plants that leads to tissue death and reduced chloroplast function. The UVH6 product is suggested to be a negative regulator of this response.; conf_class=1; symbol=UVH6; Alias=ATXPD, ARABIDOPSIS THALIANA XERODERMA PIGMENTOSUM GROUP D; full_name=ULTRAVIOLET HYPERSENSITIVE 6; computational_description=ULTRAVIOLET HYPERSENSITIVE 6 (UVH6)%3B FUNCTIONS IN: in 6 functions%3B INVOLVED IN: DNA repair%2C response to UV%2C response to heat%3B LOCATED IN: nucleus%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Helicase%2C superfamily 1/2%2C ATP-binding domain%2C DinG/Rad3-type (InterPro:IPR014013)%2C Xeroderma pigmentosum group D protein (InterPro:IPR001945)%2C Helicase-like%2C DEXD box c2 type (InterPro:IPR006554)%2C Helicase%2C ATP-dependent%2C c2 type (InterPro:IPR006555)%2C DNA/RNA helicase%2C ATP-dependent%2C DEAH-box type%2C conserved site (InterPro:IPR002464)%2C DEAD2 (InterPro:IPR010614)%2C DNA helicase (DNA repair)%2C Rad3 type (InterPro:IPR013020)%2C Protein of unknown function DUF1227 (InterPro:IPR010643)%3B BEST Arabidopsis thaliana protein match is: RAD3-like DNA-binding helicase protein (TAIR:AT1G20720.1)%3B Has 3290 Blast hits to 2576 proteins in 779 species: Archae - 308%3B Bacteria - 1186%3B Metazoa - 653%3B Fungi - 359%3B Plants - 198%3B Viruses - 2%3B Other Eukaryotes - 584 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12857822, PMID:12969430, PMID:15155891, PMID:15645454, PMID:9771713, PMID:18515112, PMID:20706207, PMID:22908040, PMID:24157211, PMID:24553752, locus:2014525; locus_type=protein_coding
AT1G03190.2	chr1:000775822	0.0	W/775822-776355,776482-776762,777155-777237,777336-777739,777872-778065,778153-778333,778486-778610,778807-778896,779002-779080,779174-779250,779538-779646,779744-779863	AT1G03190.2 CDS AT1G03190 ID=AT1G03190.2; Parent=AT1G03190; Name=AT1G03190.2; Note=RAD3-like DNA-binding helicase protein; curator_summary=UV damage and heat induce a common stress response in plants that leads to tissue death and reduced chloroplast function. The UVH6 product is suggested to be a negative regulator of this response.; conf_class=1; symbol=UVH6; Alias=ATXPD, ARABIDOPSIS THALIANA XERODERMA PIGMENTOSUM GROUP D; full_name=ULTRAVIOLET HYPERSENSITIVE 6; computational_description=ULTRAVIOLET HYPERSENSITIVE 6 (UVH6)%3B FUNCTIONS IN: in 6 functions%3B INVOLVED IN: DNA repair%2C response to UV%2C response to heat%3B LOCATED IN: nucleus%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Helicase%2C superfamily 1/2%2C ATP-binding domain%2C DinG/Rad3-type (InterPro:IPR014013)%2C Xeroderma pigmentosum group D protein (InterPro:IPR001945)%2C Helicase-like%2C DEXD box c2 type (InterPro:IPR006554)%2C Helicase%2C ATP-dependent%2C c2 type (InterPro:IPR006555)%2C DNA/RNA helicase%2C ATP-dependent%2C DEAH-box type%2C conserved site (InterPro:IPR002464)%2C DEAD2 (InterPro:IPR010614)%2C DNA helicase (DNA repair)%2C Rad3 type (InterPro:IPR013020)%2C Protein of unknown function DUF1227 (InterPro:IPR010643)%3B BEST Arabidopsis thaliana protein match is: RAD3-like DNA-binding helicase protein (TAIR:AT1G20720.1)%3B Has 3290 Blast hits to 2576 proteins in 779 species: Archae - 308%3B Bacteria - 1186%3B Metazoa - 653%3B Fungi - 359%3B Plants - 198%3B Viruses - 2%3B Other Eukaryotes - 584 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12857822, PMID:12969430, PMID:15155891, PMID:15645454, PMID:9771713, PMID:18515112, PMID:20706207, PMID:22908040, PMID:24157211, PMID:24553752, locus:2014525; locus_type=protein_coding
AT1G04177.1	chr1:000780107	0.0	W/780107-780409	AT1G04177.1 lnc_RNA AT1G04177 ID=AT1G04177.1; Parent=AT1G04177; Name=AT1G04177.1; locus_type=long_noncoding_rna
AT1G03200.1	chr1:000780755	0.0	W/780755-780836,781081-781124	AT1G03200.1 CDS AT1G03200 ID=AT1G03200.1; Parent=AT1G03200; Name=AT1G03200.1; Note=hypothetical protein; conf_class=2; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03240.1)%3B Has 2 Blast hits to 2 proteins in 1 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 2%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14535883, locus:2014495; locus_type=protein_coding
AT1TE02540	chr1:000781194	0.0	C/781194-782748	AT1TE02540 transposable_element AT1TE02540 ID=AT1TE02540; Name=AT1TE02540; Alias=ATREP15
AT1TE02545	chr1:000782749	0.0	W/782749-782943	AT1TE02545 transposable_element AT1TE02545 ID=AT1TE02545; Name=AT1TE02545; Alias=HELITRONY2
AT1TE02550	chr1:000782944	0.0	W/782944-782971	AT1TE02550 transposable_element AT1TE02550 ID=AT1TE02550; Name=AT1TE02550; Alias=ATREP3
AT1G03210.1	chr1:000782948	0.0	W/782948-783175,783318-783596,783681-783842,783943-784026,784133-784240	AT1G03210.1 CDS AT1G03210 ID=AT1G03210.1; Parent=AT1G03210; Name=AT1G03210.1; Note=Phenazine biosynthesis PhzC/PhzF protein; conf_class=1; computational_description=Phenazine biosynthesis PhzC/PhzF protein%3B FUNCTIONS IN: catalytic activity%3B INVOLVED IN: biosynthetic process%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Phenazine biosynthesis PhzC/PhzF protein (InterPro:IPR003719)%3B BEST Arabidopsis thaliana protein match is: Phenazine biosynthesis PhzC/PhzF protein (TAIR:AT4G02860.1)%3B Has 4142 Blast hits to 4139 proteins in 1263 species: Archae - 52%3B Bacteria - 3137%3B Metazoa - 121%3B Fungi - 124%3B Plants - 90%3B Viruses - 0%3B Other Eukaryotes - 618 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:18650403, PMID:18775970, locus:2014485; locus_type=protein_coding
AT1G03210.2	chr1:000782948	0.0	W/782948-783175,783318-783842,783943-784026,784133-784240	AT1G03210.2 CDS AT1G03210 ID=AT1G03210.2; Parent=AT1G03210; Name=AT1G03210.2; Note=Phenazine biosynthesis PhzC/PhzF protein; computational_description=Phenazine biosynthesis PhzC/PhzF protein%3B FUNCTIONS IN: catalytic activity%3B INVOLVED IN: biosynthetic process%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Phenazine biosynthesis PhzC/PhzF protein (InterPro:IPR003719)%3B BEST Arabidopsis thaliana protein match is: Phenazine biosynthesis PhzC/PhzF protein (TAIR:AT4G02860.1)%3B Has 4142 Blast hits to 4139 proteins in 1263 species: Archae - 52%3B Bacteria - 3137%3B Metazoa - 121%3B Fungi - 124%3B Plants - 90%3B Viruses - 0%3B Other Eukaryotes - 618 (source: NCBI BLink).; Dbxref=PMID:18650403, PMID:18775970, locus:2014485; locus_type=protein_coding
AT1TE02555	chr1:000784893	0.0	C/784893-784929	AT1TE02555 transposable_element AT1TE02555 ID=AT1TE02555; Name=AT1TE02555; Alias=ATHPOGON1
AT1TE02560	chr1:000784930	0.0	W/784930-785447	AT1TE02560 transposable_element AT1TE02560 ID=AT1TE02560; Name=AT1TE02560; Alias=ATHPOGON1
AT1TE02565	chr1:000785448	0.0	W/785448-785479	AT1TE02565 transposable_element AT1TE02565 ID=AT1TE02565; Name=AT1TE02565; Alias=HELITRONY1D
AT1G03220.1	chr1:000787143	0.0	W/787143-788444	AT1G03220.1 CDS AT1G03220 ID=AT1G03220.1; Parent=AT1G03220; Name=AT1G03220.1; Note=Eukaryotic aspartyl protease family protein; conf_class=1; computational_description=Eukaryotic aspartyl protease family protein%3B FUNCTIONS IN: aspartic-type endopeptidase activity%3B INVOLVED IN: response to salt stress%3B LOCATED IN: cell wall%2C plasma membrane%2C membrane%2C plant-type cell wall%3B EXPRESSED IN: 6 plant structures%3B CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109)%2C Peptidase aspartic%2C catalytic (InterPro:IPR009007)%2C Peptidase A1 (InterPro:IPR001461)%3B BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT1G03230.1)%3B Has 1398 Blast hits to 1391 proteins in 46 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1396%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11351099, PMID:14595688, PMID:15047898, PMID:15235117, PMID:15295017, PMID:15593128, PMID:15769804, PMID:16081496, PMID:16262716, PMID:16618929, PMID:16980540, PMID:18805951, PMID:18796151, PMID:18775970, PMID:20442276, PMID:20736450, locus:2014475; locus_type=protein_coding
AT1G03230.1	chr1:000790110	0.0	W/790110-791414	AT1G03230.1 CDS AT1G03230 ID=AT1G03230.1; Parent=AT1G03230; Name=AT1G03230.1; Note=Eukaryotic aspartyl protease family protein; conf_class=1; computational_description=Eukaryotic aspartyl protease family protein%3B FUNCTIONS IN: aspartic-type endopeptidase activity%3B INVOLVED IN: response to salt stress%3B LOCATED IN: cell wall%2C plant-type cell wall%3B EXPRESSED IN: stem%2C root%3B CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109)%2C Peptidase aspartic%2C catalytic (InterPro:IPR009007)%2C Peptidase A1 (InterPro:IPR001461)%3B BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT1G03220.1)%3B Has 1391 Blast hits to 1386 proteins in 45 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1391%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14576160, PMID:15593128, PMID:15769804, PMID:18805951, PMID:18796151, PMID:20736450, locus:2014465; locus_type=protein_coding
AT1G03240.1	chr1:000792418	0.0	C/792418-792461,792754-792838	AT1G03240.1 CDS AT1G03240 ID=AT1G03240.1; Parent=AT1G03240; Name=AT1G03240.1; Note=hypothetical protein; conf_class=4; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03200.1)%3B Has 2 Blast hits to 2 proteins in 1 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 2%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:18775970, locus:2014555; locus_type=protein_coding
AT1G03250.1	chr1:000793576	0.0	C/793576-793731,793829-793930,794022-794180,794328-794410,794542-794650,794899-794969,795102-795159	AT1G03250.1 CDS AT1G03250 ID=AT1G03250.1; Parent=AT1G03250; Name=AT1G03250.1; Note=R3H domain protein; conf_class=2; computational_description=unknown protein%3B Has 89 Blast hits to 89 proteins in 31 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 31%3B Fungi - 0%3B Plants - 48%3B Viruses - 0%3B Other Eukaryotes - 10 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, locus:2014545; locus_type=protein_coding
AT1G03250.2	chr1:000793576	0.0	C/793576-793731,793829-793930,794022-794198,794328-794410,794542-794650,794899-794969,795102-795159	AT1G03250.2 CDS AT1G03250 ID=AT1G03250.2; Parent=AT1G03250; Name=AT1G03250.2; Note=R3H domain protein; conf_class=4; computational_description=unknown protein%3B Has 89 Blast hits to 89 proteins in 31 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 31%3B Fungi - 0%3B Plants - 48%3B Viruses - 0%3B Other Eukaryotes - 10 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:18775970, locus:2014545; locus_type=protein_coding
AT1G03250.3	chr1:000793576	0.0	C/793576-793731,793829-793930,794022-794180,794328-794410,794542-794605	AT1G03250.3 CDS AT1G03250 ID=AT1G03250.3; Parent=AT1G03250; Name=AT1G03250.3; Note=R3H domain protein; computational_description=unknown protein%3B Has 89 Blast hits to 89 proteins in 31 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 31%3B Fungi - 0%3B Plants - 48%3B Viruses - 0%3B Other Eukaryotes - 10 (source: NCBI BLink).; Dbxref=PMID:18775970, locus:2014545; locus_type=protein_coding
AT1G03250.4	chr1:000793823	0.0	C/793823-793930,794022-794180,794328-794410,794542-794650,794899-794969,795102-795159	AT1G03250.4 CDS AT1G03250 ID=AT1G03250.4; Parent=AT1G03250; Name=AT1G03250.4; Note=R3H domain protein; computational_description=unknown protein%3B Has 89 Blast hits to 89 proteins in 31 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 31%3B Fungi - 0%3B Plants - 48%3B Viruses - 0%3B Other Eukaryotes - 10 (source: NCBI BLink).; Dbxref=PMID:18775970, locus:2014545; locus_type=protein_coding
AT1G03260.1	chr1:000795678	0.0	C/795678-795856,795988-796018,796536-796628,796776-796892,797041-797127,797313-797411,797546-797600,797728-797789,798001-798102	AT1G03260.1 CDS AT1G03260 ID=AT1G03260.1; Parent=AT1G03260; Name=AT1G03260.1; Note=SNARE associated Golgi protein family; conf_class=2; computational_description=SNARE associated Golgi protein family%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414)%3B BEST Arabidopsis thaliana protein match is: SNARE associated Golgi protein family (TAIR:AT5G19070.1)%3B Has 5379 Blast hits to 5379 proteins in 1283 species: Archae - 29%3B Bacteria - 3492%3B Metazoa - 274%3B Fungi - 131%3B Plants - 303%3B Viruses - 0%3B Other Eukaryotes - 1150 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:18775970, locus:2014530; locus_type=protein_coding
AT1G03270.1	chr1:000799191	0.0	W/799191-799431,799641-799717,799827-799910,799999-800112,800382-800465,800629-800700,800972-801039,801185-801272,801356-801429,801517-801889,802012-802058,802163-802223,802320-802436	AT1G03270.1 CDS AT1G03270 ID=AT1G03270.1; Parent=AT1G03270; Name=AT1G03270.1; Note=CBS domain protein with a domain protein (DUF21); conf_class=4; computational_description=CBS domain-containing protein with a domain of unknown function (DUF21)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF21 (InterPro:IPR002550)%3B BEST Arabidopsis thaliana protein match is: CBS domain-containing protein with a domain of unknown function (DUF21) (TAIR:AT4G14240.1)%3B Has 10325 Blast hits to 10105 proteins in 2459 species: Archae - 102%3B Bacteria - 7685%3B Metazoa - 330%3B Fungi - 275%3B Plants - 225%3B Viruses - 0%3B Other Eukaryotes - 1708 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:16607029, locus:2014520; locus_type=protein_coding
AT1G03280.1	chr1:000803635	0.0	W/803635-803687,803835-803957,804247-804367,804739-804852,804961-805070,805167-805350,805458-805652,805860-806087,806196-806409,806661-806758	AT1G03280.1 CDS AT1G03280 ID=AT1G03280.1; Parent=AT1G03280; Name=AT1G03280.1; Note=Transcription factor TFIIE%2C alpha subunit; conf_class=2; computational_description=Transcription factor TFIIE%2C alpha subunit%3B FUNCTIONS IN: RNA polymerase II transcription factor activity%2C transcription initiation factor activity%3B INVOLVED IN: transcription initiation from RNA polymerase II promoter%3B LOCATED IN: endomembrane system%2C transcription factor TFIIE complex%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Transcription factor TFIIE%2C alpha subunit (InterPro:IPR002853)%2C Transcription factor TFE/TFIIEalpha%2C HTH domain (InterPro:IPR017919)%3B BEST Arabidopsis thaliana protein match is: Transcription factor TFIIE%2C alpha subunit (TAIR:AT4G20340.1)%3B Has 759 Blast hits to 706 proteins in 191 species: Archae - 5%3B Bacteria - 10%3B Metazoa - 313%3B Fungi - 190%3B Plants - 108%3B Viruses - 11%3B Other Eukaryotes - 122 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17675552, PMID:18650403, PMID:18775970, locus:2014515; locus_type=protein_coding
AT1G03280.2	chr1:000803635	0.0	W/803635-803687,803835-803957,804247-804367,804739-804852,804961-805070,805167-805350,805458-805652,805860-806087,806196-806409,806661-806758	AT1G03280.2 CDS AT1G03280 ID=AT1G03280.2; Parent=AT1G03280; Name=AT1G03280.2; Note=Transcription factor TFIIE%2C alpha subunit; Dbxref=PMID:17675552, PMID:18650403, PMID:18775970, locus:2014515; computational_description=Transcription factor TFIIE%2C alpha subunit%3B FUNCTIONS IN: RNA polymerase II transcription factor activity%2C transcription initiation factor activity%3B INVOLVED IN: transcription initiation from RNA polymerase II promoter%3B LOCATED IN: endomembrane system%2C transcription factor TFIIE complex%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Transcription factor TFIIE%2C alpha subunit (InterPro:IPR002853)%2C Transcription factor TFE/TFIIEalpha%2C HTH domain (InterPro:IPR017919)%3B BEST Arabidopsis thaliana protein match is: Transcription factor TFIIE%2C alpha subunit (TAIR:AT4G20340.1)%3B Has 759 Blast hits to 706 proteins in 191 species: Archae - 5%3B Bacteria - 10%3B Metazoa - 313%3B Fungi - 190%3B Plants - 108%3B Viruses - 11%3B Other Eukaryotes - 122 (source: NCBI BLink).; locus_type=protein_coding
AT1G03280.3	chr1:000803635	0.0	W/803635-803687,803835-803957,804247-804367,804739-804852,804961-805070,805167-805350,805458-805652,805860-806087,806196-806409,806661-806758	AT1G03280.3 CDS AT1G03280 ID=AT1G03280.3; Parent=AT1G03280; Name=AT1G03280.3; Note=Transcription factor TFIIE%2C alpha subunit; Dbxref=PMID:17675552, PMID:18650403, PMID:18775970, locus:2014515; computational_description=Transcription factor TFIIE%2C alpha subunit%3B FUNCTIONS IN: RNA polymerase II transcription factor activity%2C transcription initiation factor activity%3B INVOLVED IN: transcription initiation from RNA polymerase II promoter%3B LOCATED IN: endomembrane system%2C transcription factor TFIIE complex%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Transcription factor TFIIE%2C alpha subunit (InterPro:IPR002853)%2C Transcription factor TFE/TFIIEalpha%2C HTH domain (InterPro:IPR017919)%3B BEST Arabidopsis thaliana protein match is: Transcription factor TFIIE%2C alpha subunit (TAIR:AT4G20340.1)%3B Has 759 Blast hits to 706 proteins in 191 species: Archae - 5%3B Bacteria - 10%3B Metazoa - 313%3B Fungi - 190%3B Plants - 108%3B Viruses - 11%3B Other Eukaryotes - 122 (source: NCBI BLink).; locus_type=protein_coding
AT1G03290.1	chr1:000807970	0.0	W/807970-808017,808229-808394,808532-809214,809409-809582,809672-809788,809911-810090,810188-810234,810380-810680	AT1G03290.1 CDS AT1G03290 ID=AT1G03290.1; Parent=AT1G03290; Name=AT1G03290.1; Note=ELKS/Rab6-interacting/CAST family protein; conf_class=2; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02880.2)%3B Has 13587 Blast hits to 10183 proteins in 1114 species: Archae - 257%3B Bacteria - 2402%3B Metazoa - 5637%3B Fungi - 960%3B Plants - 675%3B Viruses - 54%3B Other Eukaryotes - 3602 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12753585, PMID:14973164, PMID:18650403, PMID:18805951, PMID:20736450, locus:2014540; locus_type=protein_coding
AT1G03290.2	chr1:000807970	0.0	W/807970-808017,808229-808394,808532-809214,809409-809582,809672-809788,809911-810090,810188-810234,810380-810680	AT1G03290.2 CDS AT1G03290 ID=AT1G03290.2; Parent=AT1G03290; Name=AT1G03290.2; Note=ELKS/Rab6-interacting/CAST family protein; conf_class=4; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02880.2)%3B Has 13587 Blast hits to 10183 proteins in 1114 species: Archae - 257%3B Bacteria - 2402%3B Metazoa - 5637%3B Fungi - 960%3B Plants - 675%3B Viruses - 54%3B Other Eukaryotes - 3602 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:12753585, PMID:14973164, PMID:18650403, PMID:18805951, PMID:20736450, locus:2014540; locus_type=protein_coding
AT1G03290.3	chr1:000807970	0.0	W/807970-808017,808229-808394,808532-809214,809409-809582,809672-809788,809911-810090,810188-810234,810380-810680	AT1G03290.3 CDS AT1G03290 ID=AT1G03290.3; Parent=AT1G03290; Name=AT1G03290.3; Note=ELKS/Rab6-interacting/CAST family protein; Dbxref=PMID:12753585, PMID:14973164, PMID:18650403, PMID:18805951, PMID:20736450, locus:2014540; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02880.2)%3B Has 13587 Blast hits to 10183 proteins in 1114 species: Archae - 257%3B Bacteria - 2402%3B Metazoa - 5637%3B Fungi - 960%3B Plants - 675%3B Viruses - 54%3B Other Eukaryotes - 3602 (source: NCBI BLink).; locus_type=protein_coding
AT1G03290.4	chr1:000807970	0.0	W/807970-808017,808229-808394,808532-809214,809409-809582,809672-809788,809911-810090,810188-810234,810380-810680	AT1G03290.4 CDS AT1G03290 ID=AT1G03290.4; Parent=AT1G03290; Name=AT1G03290.4; Note=ELKS/Rab6-interacting/CAST family protein; Dbxref=PMID:12753585, PMID:14973164, PMID:18650403, PMID:18805951, PMID:20736450, locus:2014540; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02880.2)%3B Has 13587 Blast hits to 10183 proteins in 1114 species: Archae - 257%3B Bacteria - 2402%3B Metazoa - 5637%3B Fungi - 960%3B Plants - 675%3B Viruses - 54%3B Other Eukaryotes - 3602 (source: NCBI BLink).; locus_type=protein_coding
AT1G03290.5	chr1:000807970	0.0	W/807970-808017,808229-808394,808532-808822,808913-809214,809409-809582,809672-809788,809911-810090,810188-810234,810380-810680	AT1G03290.5 CDS AT1G03290 ID=AT1G03290.5; Parent=AT1G03290; Name=AT1G03290.5; Note=ELKS/Rab6-interacting/CAST family protein; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02880.2)%3B Has 13587 Blast hits to 10183 proteins in 1114 species: Archae - 257%3B Bacteria - 2402%3B Metazoa - 5637%3B Fungi - 960%3B Plants - 675%3B Viruses - 54%3B Other Eukaryotes - 3602 (source: NCBI BLink).; Dbxref=PMID:12753585, PMID:14973164, PMID:18650403, PMID:18805951, PMID:20736450, locus:2014540; locus_type=protein_coding
AT1G03290.6	chr1:000807970	0.0	W/807970-808017,808229-808394,808532-808822,808979-809214,809409-809582,809672-809788,809911-810090,810188-810234,810380-810680	AT1G03290.6 CDS AT1G03290 ID=AT1G03290.6; Parent=AT1G03290; Name=AT1G03290.6; Note=ELKS/Rab6-interacting/CAST family protein; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02880.2)%3B Has 13587 Blast hits to 10183 proteins in 1114 species: Archae - 257%3B Bacteria - 2402%3B Metazoa - 5637%3B Fungi - 960%3B Plants - 675%3B Viruses - 54%3B Other Eukaryotes - 3602 (source: NCBI BLink).; Dbxref=PMID:12753585, PMID:14973164, PMID:18650403, PMID:18805951, PMID:20736450, locus:2014540; locus_type=protein_coding
AT1G03300.1	chr1:000811033	0.0	C/811033-811988,812030-813086	AT1G03300.1 CDS AT1G03300 ID=AT1G03300.1; Parent=AT1G03300; Name=AT1G03300.1; Note=agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 1); curator_summary=Member of the plant-specific DUF724 protein family. Arabidopsis has 10 DUF724 proteins. Loss of function mutant has a WT phenotype; conf_class=8; symbol=ATDUF1; Alias=DUF1, DOMAIN OF UNKNOWN FUNCTION 724 1; full_name=DOMAIN OF UNKNOWN FUNCTION 724 1; computational_description=DOMAIN OF UNKNOWN FUNCTION 724 1 (ATDUF1)%3B FUNCTIONS IN: RNA binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: nucleus%3B EXPRESSED IN: 30 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Tudor-like%2C plant (InterPro:IPR014002)%2C Agenet (InterPro:IPR008395)%2C Protein of unknown function DUF724 (InterPro:IPR007930)%3B BEST Arabidopsis thaliana protein match is: DOMAIN OF UNKNOWN FUNCTION 724 6 (TAIR:AT2G47230.1)%3B Has 656 Blast hits to 530 proteins in 96 species: Archae - 2%3B Bacteria - 31%3B Metazoa - 151%3B Fungi - 36%3B Plants - 287%3B Viruses - 0%3B Other Eukaryotes - 149 (source: NCBI BLink).; conf_rating=*; Dbxref=PMID:15923328, PMID:19795213, PMID:20736450, locus:2014505; locus_type=protein_coding
AT1G03310.1	chr1:000813975	0.0	W/813975-816623	AT1G03310.1 CDS AT1G03310 ID=AT1G03310.1; Parent=AT1G03310; Name=AT1G03310.1; Note=debranching enzyme 1; curator_summary=Encodes a protein with strong similarity to isoamylase (EC:3.2.1.68) however lacks critical residues known to be important for activity. Appears to co localize with ISA1 in the chloroplast isoamylase complex. Mutations in this gene cause the loss of detectable isoamylase activity and the disruption of normal starch structure. It has been postulated that AtISA2 interacts with AtISA1 to form the Iso1 complex.; conf_class=2; symbol=DBE1; Alias=ATISA2, ARABIDOPSIS THALIANA ISOAMYLASE 2, AtBE2, BE2, BRANCHING ENZYME 2, ISA2; full_name=debranching enzyme 1; computational_description=debranching enzyme 1 (DBE1)%3B FUNCTIONS IN: isoamylase activity%2C alpha-amylase activity%3B INVOLVED IN: carbohydrate metabolic process%2C amylopectin biosynthetic process%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Glycoside hydrolase%2C family 13%2C N-terminal (InterPro:IPR004193)%2C Immunoglobulin E-set (InterPro:IPR014756)%2C Glycoside hydrolase%2C catalytic core (InterPro:IPR017853)%2C Glycoside hydrolase%2C subgroup%2C catalytic core (InterPro:IPR013781)%2C Glycosyl hydrolase%2C family 13%2C catalytic domain (InterPro:IPR006047)%3B BEST Arabidopsis thaliana protein match is: isoamylase 3 (TAIR:AT4G09020.1)%3B Has 10041 Blast hits to 10011 proteins in 2123 species: Archae - 109%3B Bacteria - 8214%3B Metazoa - 136%3B Fungi - 197%3B Plants - 613%3B Viruses - 0%3B Other Eukaryotes - 772 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12805619, PMID:15347792, PMID:15743447, PMID:15849301, PMID:17028209, PMID:18650403, PMID:18815382, PMID:19074683, PMID:22789914, PMID:23019330, PMID:23393426, PMID:24027240, PMID:23952574, PMID:24098685, PMID:24642810, PMID:25014622, PMID:25663508, locus:2014500; locus_type=protein_coding
AT1G03310.2	chr1:000813975	0.0	W/813975-816623	AT1G03310.2 CDS AT1G03310 ID=AT1G03310.2; Parent=AT1G03310; Name=AT1G03310.2; Note=debranching enzyme 1; curator_summary=Encodes a protein with strong similarity to isoamylase (EC:3.2.1.68) however lacks critical residues known to be important for activity. Appears to co localize with ISA1 in the chloroplast isoamylase complex. Mutations in this gene cause the loss of detectable isoamylase activity and the disruption of normal starch structure. It has been postulated that AtISA2 interacts with AtISA1 to form the Iso1 complex.; conf_class=2; symbol=DBE1; Alias=ATISA2, ARABIDOPSIS THALIANA ISOAMYLASE 2, AtBE2, BE2, BRANCHING ENZYME 2, ISA2; full_name=debranching enzyme 1; computational_description=debranching enzyme 1 (DBE1)%3B FUNCTIONS IN: isoamylase activity%2C alpha-amylase activity%3B INVOLVED IN: carbohydrate metabolic process%2C amylopectin biosynthetic process%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Glycoside hydrolase%2C family 13%2C N-terminal (InterPro:IPR004193)%2C Immunoglobulin E-set (InterPro:IPR014756)%2C Glycoside hydrolase%2C catalytic core (InterPro:IPR017853)%2C Glycoside hydrolase%2C subgroup%2C catalytic core (InterPro:IPR013781)%2C Glycosyl hydrolase%2C family 13%2C catalytic domain (InterPro:IPR006047)%3B BEST Arabidopsis thaliana protein match is: isoamylase 3 (TAIR:AT4G09020.1)%3B Has 10041 Blast hits to 10011 proteins in 2123 species: Archae - 109%3B Bacteria - 8214%3B Metazoa - 136%3B Fungi - 197%3B Plants - 613%3B Viruses - 0%3B Other Eukaryotes - 772 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12805619, PMID:15347792, PMID:15743447, PMID:15849301, PMID:17028209, PMID:18650403, PMID:18815382, PMID:19074683, PMID:22789914, PMID:23019330, PMID:23393426, PMID:24027240, PMID:23952574, PMID:24098685, PMID:24642810, PMID:25014622, PMID:25663508, locus:2014500; locus_type=protein_coding
AT1G03320.1	chr1:000817027	0.0	W/817027-817096,817175-817767	AT1G03320.1 CDS AT1G03320 ID=AT1G03320.1; Parent=AT1G03320; Name=AT1G03320.1; Note=hypothetical protein; conf_class=3; computational_description=unknown protein%3B Has 1038 Blast hits to 683 proteins in 112 species: Archae - 4%3B Bacteria - 14%3B Metazoa - 318%3B Fungi - 117%3B Plants - 86%3B Viruses - 8%3B Other Eukaryotes - 491 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2014490; locus_type=protein_coding
AT1G03325.1	chr1:000817053	0.0	C/817053-817178	AT1G03325.1 CDS AT1G03325 ID=AT1G03325.1; Parent=AT1G03325; Name=AT1G03325.1; Note=hypothetical protein; locus_type=protein_coding
AT1G03330.1	chr1:000818161	0.0	C/818161-818280,818920-819078,819295-819297	AT1G03330.1 CDS AT1G03330 ID=AT1G03330.1; Parent=AT1G03330; Name=AT1G03330.1; Note=Small nuclear ribonucleoprotein family protein; conf_class=2; symbol=LSM2; full_name=SM-like 2; computational_description=Small nuclear ribonucleoprotein family protein%3B CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163)%2C U6 snRNA-associated Sm-like protein LSm2 (InterPro:IPR016654)%2C Like-Sm ribonucleoprotein (LSM) domain%2C eukaryotic/archaea-type (InterPro:IPR006649)%2C Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920)%3B Has 762 Blast hits to 762 proteins in 209 species: Archae - 2%3B Bacteria - 0%3B Metazoa - 303%3B Fungi - 225%3B Plants - 97%3B Viruses - 0%3B Other Eukaryotes - 135 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18315867, PMID:18650403, PMID:21142222, PMID:23221597, PMID:23620288, locus:2014480; locus_type=protein_coding
AT1G03340.1	chr1:000819712	0.0	W/819712-819783,819897-820077,820159-820501,820595-820666,820738-821227	AT1G03340.1 CDS AT1G03340 ID=AT1G03340.1; Parent=AT1G03340; Name=AT1G03340.1; Note=hypothetical protein; conf_class=1; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02920.1)%3B Has 44 Blast hits to 41 proteins in 13 species: Archae - 0%3B Bacteria - 1%3B Metazoa - 0%3B Fungi - 0%3B Plants - 43%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:20736450, locus:2014470; locus_type=protein_coding
AT1TE02680	chr1:000821723	0.0	C/821723-821763	AT1TE02680 transposable_element AT1TE02680 ID=AT1TE02680; Name=AT1TE02680; Alias=ATREP4
AT1TE02685	chr1:000821764	0.0	C/821764-821946	AT1TE02685 transposable_element AT1TE02685 ID=AT1TE02685; Name=AT1TE02685; Alias=HELITRONY1D
AT1TE02690	chr1:000821947	0.0	C/821947-822571	AT1TE02690 transposable_element AT1TE02690 ID=AT1TE02690; Name=AT1TE02690; Alias=ATREP5
AT1TE02695	chr1:000822579	0.0	C/822579-822627	AT1TE02695 transposable_element AT1TE02695 ID=AT1TE02695; Name=AT1TE02695; Alias=ATREP15
AT1G03350.1	chr1:000822834	0.0	C/822834-824246	AT1G03350.1 CDS AT1G03350 ID=AT1G03350.1; Parent=AT1G03350; Name=AT1G03350.1; Note=BSD domain-containing protein; conf_class=1; computational_description=BSD domain-containing protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: BSD (InterPro:IPR005607)%3B BEST Arabidopsis thaliana protein match is: BSD domain-containing protein (TAIR:AT4G13110.1)%3B Has 10642 Blast hits to 5945 proteins in 665 species: Archae - 52%3B Bacteria - 3714%3B Metazoa - 2927%3B Fungi - 1314%3B Plants - 393%3B Viruses - 71%3B Other Eukaryotes - 2171 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15449379, PMID:18775970, PMID:20736450, locus:2014460; locus_type=protein_coding
AT1G03360.1	chr1:000824653	0.0	W/824653-824813,824891-824992,825102-825147,825253-825342,825422-825487,825587-825655,825745-826179	AT1G03360.1 CDS AT1G03360 ID=AT1G03360.1; Parent=AT1G03360; Name=AT1G03360.1; Note=ribosomal RNA processing 4; conf_class=2; symbol=RRP4; Alias=ATRRP4, ribosomal RNA processing 4; full_name=ribosomal RNA processing 4; computational_description=ribosomal RNA processing 4 (RRP4)%3B FUNCTIONS IN: exonuclease activity%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Nucleic acid-binding%2C OB-fold-like (InterPro:IPR016027)%3B Has 615 Blast hits to 615 proteins in 291 species: Archae - 147%3B Bacteria - 0%3B Metazoa - 136%3B Fungi - 134%3B Plants - 55%3B Viruses - 0%3B Other Eukaryotes - 143 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11809881, PMID:15695462, locus:2014535; locus_type=protein_coding
AT1G03365.1	chr1:000827182	0.0	W/827182-829182,829721-830191	AT1G03365.1 CDS AT1G03365 ID=AT1G03365.1; Parent=AT1G03365; Name=AT1G03365.1; Note=RING/U-box superfamily protein; conf_class=4; computational_description=RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G03000.2).; conf_rating=***; Dbxref=PMID:11983057, locus:6530298128; locus_type=protein_coding
AT1G03365.2	chr1:000827182	0.0	W/827182-829182,829721-830191	AT1G03365.2 CDS AT1G03365 ID=AT1G03365.2; Parent=AT1G03365; Name=AT1G03365.2; Note=RING/U-box superfamily protein; Dbxref=PMID:11983057, locus:6530298128; computational_description=RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G03000.2).; locus_type=protein_coding
AT1G03370.1	chr1:000830968	0.0	W/830968-831313,831420-832640,832753-832935,833084-833367,833454-833570,833694-833956,834254-834419,834514-834996	AT1G03370.1 CDS AT1G03370 ID=AT1G03370.1; Parent=AT1G03370; Name=AT1G03370.1; Note=C2 calcium/lipid-binding and GRAM domain containing protein; conf_class=2; computational_description=C2 calcium/lipid-binding and GRAM domain containing protein%3B CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029)%2C C2 calcium/lipid-binding domain%2C CaLB (InterPro:IPR008973)%2C GRAM (InterPro:IPR004182)%2C C2 region (InterPro:IPR020477)%2C C2 calcium-dependent membrane targeting (InterPro:IPR000008)%3B BEST Arabidopsis thaliana protein match is: C2 calcium/lipid-binding and GRAM domain containing protein (TAIR:AT5G50170.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15047898, PMID:15269331, PMID:18201690, PMID:18650403, PMID:18775970, locus:2014510; locus_type=protein_coding
AT1G03370.2	chr1:000830968	0.0	W/830968-831313,831420-832640,832753-832935,833084-833367,833454-833570,833694-833960	AT1G03370.2 CDS AT1G03370 ID=AT1G03370.2; Parent=AT1G03370; Name=AT1G03370.2; Note=C2 calcium/lipid-binding and GRAM domain containing protein; computational_description=C2 calcium/lipid-binding and GRAM domain containing protein%3B CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029)%2C C2 calcium/lipid-binding domain%2C CaLB (InterPro:IPR008973)%2C GRAM (InterPro:IPR004182)%2C C2 region (InterPro:IPR020477)%2C C2 calcium-dependent membrane targeting (InterPro:IPR000008)%3B BEST Arabidopsis thaliana protein match is: C2 calcium/lipid-binding and GRAM domain containing protein (TAIR:AT5G50170.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=PMID:15047898, PMID:15269331, PMID:18201690, PMID:18650403, PMID:18775970, locus:2014510; locus_type=protein_coding
AT1G03380.1	chr1:000836155	0.0	W/836155-836328,836769-837233,837471-837908,838069-838314,838400-839227,839312-839469,839678-839805,839920-840362	AT1G03380.1 CDS AT1G03380 ID=AT1G03380.1; Parent=AT1G03380; Name=AT1G03380.1; Note=yeast autophagy 18 G-like protein; conf_class=2; symbol=ATG18G; Alias=ATATG18G, homolog of yeast autophagy 18 (ATG18) G; full_name=homolog of yeast autophagy 18 (ATG18) G; computational_description=homolog of yeast autophagy 18 (ATG18) G (ATG18G)%3B CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046)%2C Breast carcinoma amplified sequence 3 (InterPro:IPR022175)%2C WD40 repeat (InterPro:IPR001680)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C WD40 repeat%2C subgroup (InterPro:IPR019781)%3B BEST Arabidopsis thaliana protein match is: homolog of yeast autophagy 18 (ATG18) H (TAIR:AT1G54710.1)%3B Has 888 Blast hits to 884 proteins in 197 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 334%3B Fungi - 309%3B Plants - 178%3B Viruses - 0%3B Other Eukaryotes - 61 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15860012, PMID:16920880, locus:2020853; locus_type=protein_coding
AT1G03390.1	chr1:000841033	0.0	C/841033-842418	AT1G03390.1 CDS AT1G03390 ID=AT1G03390.1; Parent=AT1G03390; Name=AT1G03390.1; Note=HXXXD-type acyl-transferase family protein; conf_class=1; computational_description=HXXXD-type acyl-transferase family protein%3B FUNCTIONS IN: transferase activity%2C transferring acyl groups other than amino-acyl groups%2C transferase activity%3B INVOLVED IN: biological_process unknown%3B EXPRESSED IN: sepal%2C flower%3B EXPRESSED DURING: petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480)%3B BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT5G41040.1)%3B Has 2639 Blast hits to 2624 proteins in 137 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 0%3B Fungi - 51%3B Plants - 2580%3B Viruses - 0%3B Other Eukaryotes - 6 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:18433503, locus:2020838; locus_type=protein_coding
AT1G03395.1	chr1:000841738	0.0	W/841738-841746,842000-842158	AT1G03395.1 CDS AT1G03395 ID=AT1G03395.1; Parent=AT1G03395; Name=AT1G03395.1; Note=hypothetical protein; locus_type=protein_coding
AT1G03400.1	chr1:000842895	0.0	C/842895-843146,843231-843552,843677-844158	AT1G03400.1 CDS AT1G03400 ID=AT1G03400.1; Parent=AT1G03400; Name=AT1G03400.1; Note=2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; curator_summary=A single copy gene that encodes a protein with sequence similarity to tomato E8 (ACC oxidase%2C the last step in ethylene biosynthesis) involved in ethylene synthesis and fruit ripening in tomato. This gene is not induced by ethylene in siliques. The transcript is found in siliques%2C etiolated seedlings%2C leaves%2C stems and flowers.; conf_class=2; computational_description=2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein%3B CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123)%3B BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G03410.1)%3B Has 8186 Blast hits to 8162 proteins in 1002 species: Archae - 0%3B Bacteria - 1123%3B Metazoa - 116%3B Fungi - 839%3B Plants - 4847%3B Viruses - 0%3B Other Eukaryotes - 1261 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:7579161, PMID:12805619, PMID:17616511, PMID:18452589, PMID:18650403, locus:2020818; locus_type=protein_coding
AT1G03400.2	chr1:000842895	0.0	C/842895-843552,843677-844158	AT1G03400.2 CDS AT1G03400 ID=AT1G03400.2; Parent=AT1G03400; Name=AT1G03400.2; Note=2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; curator_summary=A single copy gene that encodes a protein with sequence similarity to tomato E8 (ACC oxidase%2C the last step in ethylene biosynthesis) involved in ethylene synthesis and fruit ripening in tomato. This gene is not induced by ethylene in siliques. The transcript is found in siliques%2C etiolated seedlings%2C leaves%2C stems and flowers.; computational_description=2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein%3B CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123)%3B BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G03410.1)%3B Has 8186 Blast hits to 8162 proteins in 1002 species: Archae - 0%3B Bacteria - 1123%3B Metazoa - 116%3B Fungi - 839%3B Plants - 4847%3B Viruses - 0%3B Other Eukaryotes - 1261 (source: NCBI BLink).; Dbxref=PMID:7579161, PMID:12805619, PMID:17616511, PMID:18452589, PMID:18650403, locus:2020818; locus_type=protein_coding
AT1G03410.1	chr1:000844782	0.0	C/844782-845033,845114-845435,845952-846574	AT1G03410.1 CDS AT1G03410 ID=AT1G03410.1; Parent=AT1G03410; Name=AT1G03410.1; Note=2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; conf_class=2; symbol=2A6; computational_description=2A6%3B FUNCTIONS IN: oxidoreductase activity%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 10 growth stages%3B CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123)%3B BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G03400.1)%3B Has 8330 Blast hits to 8293 proteins in 997 species: Archae - 0%3B Bacteria - 1128%3B Metazoa - 114%3B Fungi - 883%3B Plants - 4883%3B Viruses - 0%3B Other Eukaryotes - 1322 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:7579161, PMID:20736450, locus:2020798; locus_type=protein_coding
AT1G03410.2	chr1:000844782	0.0	C/844782-845033,845114-845435,845952-846463	AT1G03410.2 CDS AT1G03410 ID=AT1G03410.2; Parent=AT1G03410; Name=AT1G03410.2; Note=2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; symbol=2A6; computational_description=2A6%3B FUNCTIONS IN: oxidoreductase activity%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 10 growth stages%3B CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123)%3B BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G03400.1)%3B Has 8330 Blast hits to 8293 proteins in 997 species: Archae - 0%3B Bacteria - 1128%3B Metazoa - 114%3B Fungi - 883%3B Plants - 4883%3B Viruses - 0%3B Other Eukaryotes - 1322 (source: NCBI BLink).; Dbxref=PMID:7579161, PMID:20736450, locus:2020798; locus_type=protein_coding
AT1G04183.1	chr1:000845677	0.0	W/845677-847683	AT1G04183.1 antisense_lncRNA AT1G04183 ID=AT1G04183.1; Parent=AT1G04183; Name=AT1G04183.1; description=Natural antisense transcript overlaps with AT1G03410; Note=Natural antisense transcript overlaps with AT1G03410; locus_type=antisense_long_noncoding_rna
AT1G03420.1	chr1:000846664	0.0	W/846664-847739	AT1G03420.1 CDS AT1G03420 ID=AT1G03420.1; Parent=AT1G03420; Name=AT1G03420.1; index=1; curator_summary=Member of Sadhu non-coding retrotransposon family; symbol=Sadhu4-2; full_name=sadhu non-coding retrotransposon 4-2; Dbxref=PMID:16552445, PMID:18650403, PMID:22487254, locus:2020758; Note=transposable_element_gene; locus_type=transposable_element_gene
AT1TE02770	chr1:000846664	0.0	W/846664-847739	AT1TE02770 transposable_element AT1TE02770 ID=AT1TE02770; Name=AT1TE02770; Alias=SADHU
AT1G03430.1	chr1:000848159	0.0	W/848159-848227,848367-848497,848642-848713,848808-848879,848998-849070,849179-849235	AT1G03430.1 CDS AT1G03430 ID=AT1G03430.1; Parent=AT1G03430; Name=AT1G03430.1; Note=histidine-containing phosphotransfer factor 5; curator_summary=Encodes AHP5%2C one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs). AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1)%2C AT3G29350 (AHP2)%2C AT5G39340 (AHP3)%2C AT3G16360 (AHP4)%2C AT1G03430 (AHP5) and AT1G80100 (AHP6).; conf_class=2; symbol=AHP5; full_name=histidine-containing phosphotransfer factor 5; computational_description=histidine-containing phosphotransfer factor 5 (AHP5)%3B CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase%2C phosphotransfer (Hpt) domain (InterPro:IPR008207)%3B BEST Arabidopsis thaliana protein match is: histidine-containing phosphotransmitter 2 (TAIR:AT3G29350.1)%3B Has 311 Blast hits to 310 proteins in 49 species: Archae - 2%3B Bacteria - 33%3B Metazoa - 0%3B Fungi - 8%3B Plants - 266%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10050311, PMID:9804162, PMID:11828030, PMID:11193423, PMID:17122069, PMID:18625081, PMID:21569135, PMID:23124324, PMID:23487796, PMID:24244460, locus:2020868; locus_type=protein_coding
AT1G03430.2	chr1:000848159	0.0	W/848159-848227,848367-848497,848642-848713,848808-848879,848998-849127	AT1G03430.2 CDS AT1G03430 ID=AT1G03430.2; Parent=AT1G03430; Name=AT1G03430.2; Note=histidine-containing phosphotransfer factor 5; symbol=AHP5; full_name=histidine-containing phosphotransfer factor 5; curator_summary=Encodes AHP5%2C one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs). AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1)%2C AT3G29350 (AHP2)%2C AT5G39340 (AHP3)%2C AT3G16360 (AHP4)%2C AT1G03430 (AHP5) and AT1G80100 (AHP6).; computational_description=histidine-containing phosphotransfer factor 5 (AHP5)%3B CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase%2C phosphotransfer (Hpt) domain (InterPro:IPR008207)%3B BEST Arabidopsis thaliana protein match is: histidine-containing phosphotransmitter 2 (TAIR:AT3G29350.1)%3B Has 311 Blast hits to 310 proteins in 49 species: Archae - 2%3B Bacteria - 33%3B Metazoa - 0%3B Fungi - 8%3B Plants - 266%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; Dbxref=PMID:10050311, PMID:9804162, PMID:11828030, PMID:11193423, PMID:17122069, PMID:18625081, PMID:21569135, PMID:23124324, PMID:23487796, PMID:24244460, locus:2020868; locus_type=protein_coding
AT1G03440.1	chr1:000852681	0.0	W/852681-853874	AT1G03440.1 CDS AT1G03440 ID=AT1G03440.1; Parent=AT1G03440; Name=AT1G03440.1; Note=Leucine-rich repeat (LRR) family protein; conf_class=1; computational_description=Leucine-rich repeat (LRR) family protein%3B INVOLVED IN: signal transduction%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain%2C type 2 (InterPro:IPR013210)%2C Leucine-rich repeat (InterPro:IPR001611)%3B BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT4G03010.1)%3B Has 51202 Blast hits to 18238 proteins in 817 species: Archae - 16%3B Bacteria - 1653%3B Metazoa - 5878%3B Fungi - 321%3B Plants - 40223%3B Viruses - 0%3B Other Eukaryotes - 3111 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11751054, PMID:17227549, PMID:20736450, PMID:21477822, locus:2020733; locus_type=protein_coding
AT1G03445.1	chr1:000854653	0.0	C/854653-854706,854803-854933,855031-855166,855255-855330,855405-855601,855688-855786,855859-855943,856056-856294,856370-856444,856540-856651,856759-856840,857013-857093,857279-857437,857547-857628,857704-857799,857971-858040,858120-858216,858599-858693,858777-858850,859001-859079,859232-859292,859398-859599	AT1G03445.1 CDS AT1G03445 ID=AT1G03445.1; Parent=AT1G03445; Name=AT1G03445.1; Note=Serine/threonine protein phosphatase family protein; curator_summary=encodes a serine%E2%80%93threonine protein phosphatase with an N-terminal Kelch-repeat domain%2C which is nuclear localized and expressed preferentially in elongating cells. Genetic evidence suggest that this gene plays a redundant role (along with other members of the same gene family) in modulating growth in response to brassinosteroid.; conf_class=1; symbol=BSU1; full_name=BRI1 SUPPRESSOR 1; computational_description=BRI1 SUPPRESSOR 1 (BSU1)%3B FUNCTIONS IN: protein binding%2C protein serine/threonine phosphatase activity%3B INVOLVED IN: brassinosteroid mediated signaling pathway%2C regulation of protein localization%3B LOCATED IN: nucleus%3B EXPRESSED IN: sperm cell%2C male gametophyte%2C cultured cell%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%3B CONTAINS InterPro DOMAIN/s: Serine/threonine protein phosphatase%2C BSU1 (InterPro:IPR012391)%2C Galactose oxidase/kelch%2C beta-propeller (InterPro:IPR011043)%2C Metallophosphoesterase (InterPro:IPR004843)%2C Kelch repeat type 2 (InterPro:IPR011498)%2C Kelch-type beta propeller (InterPro:IPR015915)%2C Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186)%3B BEST Arabidopsis thaliana protein match is: BRI1 suppressor 1 (BSU1)-like 1 (TAIR:AT4G03080.1)%3B Has 12351 Blast hits to 9811 proteins in 679 species: Archae - 82%3B Bacteria - 604%3B Metazoa - 4121%3B Fungi - 2161%3B Plants - 2580%3B Viruses - 7%3B Other Eukaryotes - 2796 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14977918, PMID:17138891, PMID:17873094, PMID:18775970, PMID:16672972, PMID:20192752, PMID:20387035, PMID:21855796, PMID:22995285, locus:2825042; locus_type=protein_coding
AT1G03445.2	chr1:000854770	0.0	C/854770-854933,855031-855166,855255-855330,855405-855601,855688-855786,855859-855943,856056-856294,856370-856444,856540-856651,856759-856840,857013-857093,857279-857437,857547-857628,857704-857799,857971-858040,858120-858216,858599-858693,858777-858850,859001-859079,859232-859292,859398-859599	AT1G03445.2 CDS AT1G03445 ID=AT1G03445.2; Parent=AT1G03445; Name=AT1G03445.2; Note=Serine/threonine protein phosphatase family protein; symbol=BSU1; full_name=BRI1 SUPPRESSOR 1; curator_summary=encodes a serine%E2%80%93threonine protein phosphatase with an N-terminal Kelch-repeat domain%2C which is nuclear localized and expressed preferentially in elongating cells. Genetic evidence suggest that this gene plays a redundant role (along with other members of the same gene family) in modulating growth in response to brassinosteroid.; computational_description=BRI1 SUPPRESSOR 1 (BSU1)%3B FUNCTIONS IN: protein binding%2C protein serine/threonine phosphatase activity%3B INVOLVED IN: brassinosteroid mediated signaling pathway%2C regulation of protein localization%3B LOCATED IN: nucleus%3B EXPRESSED IN: sperm cell%2C male gametophyte%2C cultured cell%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%3B CONTAINS InterPro DOMAIN/s: Serine/threonine protein phosphatase%2C BSU1 (InterPro:IPR012391)%2C Galactose oxidase/kelch%2C beta-propeller (InterPro:IPR011043)%2C Metallophosphoesterase (InterPro:IPR004843)%2C Kelch repeat type 2 (InterPro:IPR011498)%2C Kelch-type beta propeller (InterPro:IPR015915)%2C Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186)%3B BEST Arabidopsis thaliana protein match is: BRI1 suppressor 1 (BSU1)-like 1 (TAIR:AT4G03080.1)%3B Has 12351 Blast hits to 9811 proteins in 679 species: Archae - 82%3B Bacteria - 604%3B Metazoa - 4121%3B Fungi - 2161%3B Plants - 2580%3B Viruses - 7%3B Other Eukaryotes - 2796 (source: NCBI BLink).; Dbxref=PMID:14977918, PMID:17138891, PMID:17873094, PMID:18775970, PMID:16672972, PMID:20192752, PMID:20387035, PMID:21855796, PMID:22995285, locus:2825042; locus_type=protein_coding
AT1G03457.1	chr1:000861109	0.0	C/861109-861278,861368-861511,861606-861909,862042-862212,862314-862393,862488-862613,862753-862804,863459-863541,863860-864019	AT1G03457.1 CDS AT1G03457 ID=AT1G03457.1; Parent=AT1G03457; Name=AT1G03457.1; Note=RNA-binding (RRM/RBD/RNP motifs) family protein; conf_class=2; Alias=AtBRN2, BRN2, Bruno-like 2; computational_description=RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Ribonucleoprotein%2C BRUNO-like (InterPro:IPR015903)%2C Paraneoplastic encephalomyelitis antigen (InterPro:IPR002343)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding protein-defense related 1 (TAIR:AT4G03110.1)%3B Has 28459 Blast hits to 16672 proteins in 823 species: Archae - 14%3B Bacteria - 1483%3B Metazoa - 15787%3B Fungi - 3162%3B Plants - 5005%3B Viruses - 0%3B Other Eukaryotes - 3008 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14977918, PMID:18775970, PMID:20687615, PMID:21120628, PMID:23437850, locus:2825067; locus_type=protein_coding
AT1G03457.2	chr1:000861109	0.0	C/861109-861278,861368-861511,861606-861909,862042-862212,862314-862393,862488-862640,862753-862804,863459-863541,863860-864019	AT1G03457.2 CDS AT1G03457 ID=AT1G03457.2; Parent=AT1G03457; Name=AT1G03457.2; Note=RNA-binding (RRM/RBD/RNP motifs) family protein; conf_class=2; Alias=AtBRN2, BRN2, Bruno-like 2; computational_description=RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Ribonucleoprotein%2C BRUNO-like (InterPro:IPR015903)%2C Paraneoplastic encephalomyelitis antigen (InterPro:IPR002343)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding protein-defense related 1 (TAIR:AT4G03110.1)%3B Has 28459 Blast hits to 16672 proteins in 823 species: Archae - 14%3B Bacteria - 1483%3B Metazoa - 15787%3B Fungi - 3162%3B Plants - 5005%3B Viruses - 0%3B Other Eukaryotes - 3008 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14977918, PMID:18775970, PMID:20687615, PMID:21120628, PMID:23437850, locus:2825067; locus_type=protein_coding
AT1G03457.3	chr1:000861109	0.0	C/861109-861278,861368-861511,861606-861909,862042-862212,862314-862393,862488-862593	AT1G03457.3 CDS AT1G03457 ID=AT1G03457.3; Parent=AT1G03457; Name=AT1G03457.3; Note=RNA-binding (RRM/RBD/RNP motifs) family protein; Alias=AtBRN2, BRN2, Bruno-like 2; computational_description=RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Ribonucleoprotein%2C BRUNO-like (InterPro:IPR015903)%2C Paraneoplastic encephalomyelitis antigen (InterPro:IPR002343)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding protein-defense related 1 (TAIR:AT4G03110.1)%3B Has 28459 Blast hits to 16672 proteins in 823 species: Archae - 14%3B Bacteria - 1483%3B Metazoa - 15787%3B Fungi - 3162%3B Plants - 5005%3B Viruses - 0%3B Other Eukaryotes - 3008 (source: NCBI BLink).; Dbxref=PMID:14977918, PMID:18775970, PMID:20687615, PMID:21120628, PMID:23437850, locus:2825067; locus_type=protein_coding
AT1G03470.1	chr1:000866217	0.0	C/866217-866941,867409-867493	AT1G03470.1 CDS AT1G03470 ID=AT1G03470.1; Parent=AT1G03470; Name=AT1G03470.1; Note=Kinase interacting (KIP1-like) family protein; curator_summary=Encodes a member of the NET superfamily of proteins that potentially couples different membranes to the actin cytoskeleton in plant cells. It colocalizes with filamentous actin and is localized to the nuclear membrane and the vacuolar membrane.; conf_class=2; symbol=NET3A; full_name=Networked 3A; computational_description=Kinase interacting (KIP1-like) family protein%3B CONTAINS InterPro DOMAIN/s: KIP1-like (InterPro:IPR011684)%3B BEST Arabidopsis thaliana protein match is: Kinase interacting (KIP1-like) family protein (TAIR:AT2G47920.1)%3B Has 687 Blast hits to 664 proteins in 124 species: Archae - 6%3B Bacteria - 10%3B Metazoa - 109%3B Fungi - 52%3B Plants - 347%3B Viruses - 3%3B Other Eukaryotes - 160 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12169696, PMID:14977918, PMID:22840520, locus:2020843; locus_type=protein_coding
AT1G03470.2	chr1:000866217	0.0	C/866217-866941,867409-867493	AT1G03470.2 CDS AT1G03470 ID=AT1G03470.2; Parent=AT1G03470; Name=AT1G03470.2; Note=Kinase interacting (KIP1-like) family protein; curator_summary=Encodes a member of the NET superfamily of proteins that potentially couples different membranes to the actin cytoskeleton in plant cells. It colocalizes with filamentous actin and is localized to the nuclear membrane and the vacuolar membrane.; conf_class=2; symbol=NET3A; full_name=Networked 3A; computational_description=Kinase interacting (KIP1-like) family protein%3B CONTAINS InterPro DOMAIN/s: KIP1-like (InterPro:IPR011684)%3B BEST Arabidopsis thaliana protein match is: Kinase interacting (KIP1-like) family protein (TAIR:AT2G47920.1)%3B Has 687 Blast hits to 664 proteins in 124 species: Archae - 6%3B Bacteria - 10%3B Metazoa - 109%3B Fungi - 52%3B Plants - 347%3B Viruses - 3%3B Other Eukaryotes - 160 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12169696, PMID:14977918, PMID:22840520, locus:2020843; locus_type=protein_coding
AT1G03470.3	chr1:000866217	0.0	C/866217-866941,867409-867493	AT1G03470.3 CDS AT1G03470 ID=AT1G03470.3; Parent=AT1G03470; Name=AT1G03470.3; Note=Kinase interacting (KIP1-like) family protein; symbol=NET3A; full_name=Networked 3A; Dbxref=PMID:12169696, PMID:14977918, PMID:22840520, locus:2020843; curator_summary=Encodes a member of the NET superfamily of proteins that potentially couples different membranes to the actin cytoskeleton in plant cells. It colocalizes with filamentous actin and is localized to the nuclear membrane and the vacuolar membrane.; computational_description=Kinase interacting (KIP1-like) family protein%3B CONTAINS InterPro DOMAIN/s: KIP1-like (InterPro:IPR011684)%3B BEST Arabidopsis thaliana protein match is: Kinase interacting (KIP1-like) family protein (TAIR:AT2G47920.1)%3B Has 687 Blast hits to 664 proteins in 124 species: Archae - 6%3B Bacteria - 10%3B Metazoa - 109%3B Fungi - 52%3B Plants - 347%3B Viruses - 3%3B Other Eukaryotes - 160 (source: NCBI BLink).; locus_type=protein_coding
AT1G03470.4	chr1:000866217	0.0	C/866217-866941,867409-867493	AT1G03470.4 CDS AT1G03470 ID=AT1G03470.4; Parent=AT1G03470; Name=AT1G03470.4; Note=Kinase interacting (KIP1-like) family protein; symbol=NET3A; full_name=Networked 3A; Dbxref=PMID:12169696, PMID:14977918, PMID:22840520, locus:2020843; curator_summary=Encodes a member of the NET superfamily of proteins that potentially couples different membranes to the actin cytoskeleton in plant cells. It colocalizes with filamentous actin and is localized to the nuclear membrane and the vacuolar membrane.; computational_description=Kinase interacting (KIP1-like) family protein%3B CONTAINS InterPro DOMAIN/s: KIP1-like (InterPro:IPR011684)%3B BEST Arabidopsis thaliana protein match is: Kinase interacting (KIP1-like) family protein (TAIR:AT2G47920.1)%3B Has 687 Blast hits to 664 proteins in 124 species: Archae - 6%3B Bacteria - 10%3B Metazoa - 109%3B Fungi - 52%3B Plants - 347%3B Viruses - 3%3B Other Eukaryotes - 160 (source: NCBI BLink).; locus_type=protein_coding
AT1G03475.1	chr1:000869302	0.0	C/869302-869370,869454-869552,869658-869782,869875-869962,870144-870227,870313-870407,870496-870571,870651-871175	AT1G03475.1 CDS AT1G03475 ID=AT1G03475.1; Parent=AT1G03475; Name=AT1G03475.1; Note=Coproporphyrinogen III oxidase; curator_summary=Encodes coproporphyrinogen III oxidase%2C a key enzyme in the biosynthetic pathway of chlorophyll and heme%2C a tetrapyrrole pathway. Mutants express cytological and molecular markers associated with the defense responses%2C usually activated by pathogen infection.; conf_class=2; symbol=LIN2; Alias=ATCPO-I, HEMF1; full_name=LESION INITIATION 2; computational_description=LESION INITIATION 2 (LIN2)%3B FUNCTIONS IN: coproporphyrinogen oxidase activity%3B INVOLVED IN: tetrapyrrole biosynthetic process%3B LOCATED IN: apoplast%2C chloroplast stroma%2C chloroplast%2C plastid%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Coproporphyrinogen III oxidase (InterPro:IPR001260)%2C Coproporphyrinogen III oxidase%2C conserved site (InterPro:IPR018375)%3B BEST Arabidopsis thaliana protein match is: Coproporphyrinogen III oxidase (TAIR:AT4G03205.1)%3B Has 4884 Blast hits to 4875 proteins in 1228 species: Archae - 0%3B Bacteria - 2144%3B Metazoa - 115%3B Fungi - 160%3B Plants - 86%3B Viruses - 0%3B Other Eukaryotes - 2379 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11489187, PMID:12777052, PMID:15632054, PMID:15632092, PMID:16244444, PMID:17828791, PMID:20118269, PMID:23462936, PMID:24023856, PMID:24064926, locus:2825062; locus_type=protein_coding
AT1G03490.1	chr1:000871874	0.0	W/871874-872212,872292-872393,872445-872682,872740-872906	AT1G03490.1 CDS AT1G03490 ID=AT1G03490.1; Parent=AT1G03490; Name=AT1G03490.1; Note=NAC domain containing protein 6; conf_class=10; symbol=NAC006; Alias=ANAC006, NAC domain containing protein 6; full_name=NAC domain containing protein 6; computational_description=NAC domain containing protein 6 (NAC006)%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: multicellular organismal development%2C regulation of transcription%3B EXPRESSED IN: cultured cell%3B CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441)%3B BEST Arabidopsis thaliana protein match is: TCV-interacting protein (TAIR:AT5G24590.2)%3B Has 1772 Blast hits to 1529 proteins in 129 species: Archae - 0%3B Bacteria - 33%3B Metazoa - 146%3B Fungi - 22%3B Plants - 1047%3B Viruses - 89%3B Other Eukaryotes - 435 (source: NCBI BLink).; Dbxref=PMID:11118137, PMID:15029955, locus:2020803; locus_type=protein_coding
AT1G03495.1	chr1:000873436	0.0	W/873436-874476	AT1G03495.1 CDS AT1G03495 ID=AT1G03495.1; Parent=AT1G03495; Name=AT1G03495.1; Note=HXXXD-type acyl-transferase family protein; conf_class=4; computational_description=HXXXD-type acyl-transferase family protein%3B FUNCTIONS IN: transferase activity%2C transferring acyl groups other than amino-acyl groups%2C transferase activity%3B INVOLVED IN: biological_process unknown%3B CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480)%3B BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT1G03940.1)%3B Has 1920 Blast hits to 1905 proteins in 110 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 18%3B Plants - 1900%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:16387852, PMID:17085508, PMID:17425720, PMID:18757557, locus:2825047; locus_type=protein_coding
AT1G04187.1	chr1:000875056	0.0	C/875056-875189	AT1G04187.1 snoRNA AT1G04187 ID=AT1G04187.1; Parent=AT1G04187; Name=AT1G04187.1; Alias=snoR97-2; Dbxref=PMID:19357091, PMID:22820990; locus_type=small_nucleolar_rna
AT1G04193.1	chr1:000875224	0.0	C/875224-875340	AT1G04193.1 snoRNA AT1G04193 ID=AT1G04193.1; Parent=AT1G04193; Name=AT1G04193.1; Alias=AtsnoR6-1; Dbxref=PMID:12520043, PMID:22820990; locus_type=small_nucleolar_rna
AT1G03502.1	chr1:000875358	0.0	C/875358-875471	AT1G03502.1 snoRNA AT1G03502 ID=AT1G03502.1; Parent=AT1G03502; curator_summary=small nucleolar RNA; computational_description=snoRNA; Dbxref=PMID:22820990, locus:3688788; Name=AT1G03502.1; Note=snoRNA; locus_type=small_nucleolar_rna
AT1G03506.1	chr1:000875518	0.0	C/875518-875604	AT1G03506.1 snoRNA AT1G03506 ID=AT1G03506.1; Parent=AT1G03506; computational_description=snoRNA; Dbxref=PMID:22820990, locus:3688785; Name=AT1G03506.1; Note=snoRNA; locus_type=small_nucleolar_rna
AT1G04197.1	chr1:000875679	0.0	C/875679-875823	AT1G04197.1 snoRNA AT1G04197 ID=AT1G04197.1; Parent=AT1G04197; Name=AT1G04197.1; Alias=AtsnoR134-1; Dbxref=PMID:20081206, PMID:22820990; locus_type=small_nucleolar_rna
AT1G03510.1	chr1:000876258	0.0	C/876258-877547	AT1G03510.1 CDS AT1G03510 ID=AT1G03510.1; Parent=AT1G03510; Name=AT1G03510.1; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; conf_class=4; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B FUNCTIONS IN: binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 10 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%2C Tetratricopeptide-like helical (InterPro:IPR011990)%3B BEST Arabidopsis thaliana protein match is: mitochondrial editing factor 21 (TAIR:AT2G20540.1)%3B Has 33405 Blast hits to 13221 proteins in 227 species: Archae - 0%3B Bacteria - 37%3B Metazoa - 55%3B Fungi - 85%3B Plants - 32781%3B Viruses - 0%3B Other Eukaryotes - 447 (source: NCBI BLink).; conf_rating=***; Dbxref=locus:2020763; locus_type=protein_coding
AT1G03515.1	chr1:000877648	0.0	W/877648-877719	AT1G03515.1 tRNA AT1G03515 ID=AT1G03515.1; Parent=AT1G03515; Note=tRNA-Asp; computational_description=tRNA-Asp (anticodon: GTC); Dbxref=PMID:8980477, PMID:23066098, PMID:8980477, locus:1005716757; Name=AT1G03515.1; locus_type=pre_trna
AT1G03520.1	chr1:000877948	0.0	C/877948-878456,878540-878655,878735-878810,878911-879553	AT1G03520.1 CDS AT1G03520 ID=AT1G03520.1; Parent=AT1G03520; Name=AT1G03520.1; Note=Core-2/I-branching beta-1%2C6-N-acetylglucosaminyltransferase family protein; conf_class=2; computational_description=Core-2/I-branching beta-1%2C6-N-acetylglucosaminyltransferase family protein%3B FUNCTIONS IN: transferase activity%2C transferring glycosyl groups%2C acetylglucosaminyltransferase activity%3B INVOLVED IN: carbohydrate biosynthetic process%3B LOCATED IN: membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Glycosyl transferase%2C family 14 (InterPro:IPR003406)%2C Core-2/I-Branching enzyme (InterPro:IPR021141)%3B BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1%2C6-N-acetylglucosaminyltransferase family protein (TAIR:AT4G03340.1)%3B Has 943 Blast hits to 943 proteins in 116 species: Archae - 0%3B Bacteria - 40%3B Metazoa - 553%3B Fungi - 0%3B Plants - 315%3B Viruses - 14%3B Other Eukaryotes - 21 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2020748; locus_type=protein_coding
AT1G03520.2	chr1:000877948	0.0	C/877948-878456,878540-878655,878735-878810,878911-879286	AT1G03520.2 CDS AT1G03520 ID=AT1G03520.2; Parent=AT1G03520; Name=AT1G03520.2; Note=Core-2/I-branching beta-1%2C6-N-acetylglucosaminyltransferase family protein; conf_class=2; computational_description=Core-2/I-branching beta-1%2C6-N-acetylglucosaminyltransferase family protein%3B FUNCTIONS IN: transferase activity%2C transferring glycosyl groups%2C acetylglucosaminyltransferase activity%3B INVOLVED IN: carbohydrate biosynthetic process%3B LOCATED IN: membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Glycosyl transferase%2C family 14 (InterPro:IPR003406)%2C Core-2/I-Branching enzyme (InterPro:IPR021141)%3B BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1%2C6-N-acetylglucosaminyltransferase family protein (TAIR:AT4G03340.1)%3B Has 943 Blast hits to 943 proteins in 116 species: Archae - 0%3B Bacteria - 40%3B Metazoa - 553%3B Fungi - 0%3B Plants - 315%3B Viruses - 14%3B Other Eukaryotes - 21 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2020748; locus_type=protein_coding
AT1G03530.1	chr1:000880638	0.0	C/880638-881876,881978-882055,882250-883338	AT1G03530.1 CDS AT1G03530 ID=AT1G03530.1; Parent=AT1G03530; Name=AT1G03530.1; Note=nuclear assembly factor 1; conf_class=2; symbol=NAF1; Alias=ATNAF1; full_name=nuclear assembly factor 1; computational_description=nuclear assembly factor 1 (NAF1)%3B FUNCTIONS IN: snoRNA binding%2C pseudouridine synthase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: box H/ACA snoRNP complex%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: H/ACA ribonucleoprotein complex%2C subunit Gar1/Naf1 (InterPro:IPR007504)%3B Has 55446 Blast hits to 31211 proteins in 1683 species: Archae - 434%3B Bacteria - 10062%3B Metazoa - 16821%3B Fungi - 8873%3B Plants - 3938%3B Viruses - 821%3B Other Eukaryotes - 14497 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15695462, PMID:12515383, locus:2020713; locus_type=protein_coding
AT1TE02880	chr1:000882330	0.0	W/882330-882554	AT1TE02880 transposable_element AT1TE02880 ID=AT1TE02880; Name=AT1TE02880; Alias=VANDAL17
AT1G03540.1	chr1:000883782	0.0	W/883782-885611	AT1G03540.1 CDS AT1G03540 ID=AT1G03540.1; Parent=AT1G03540; Name=AT1G03540.1; Note=Pentatricopeptide repeat (PPR-like) superfamily protein; conf_class=1; computational_description=Pentatricopeptide repeat (PPR-like) superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT2G13600.1)%3B Has 43035 Blast hits to 14042 proteins in 228 species: Archae - 0%3B Bacteria - 19%3B Metazoa - 59%3B Fungi - 97%3B Plants - 42229%3B Viruses - 0%3B Other Eukaryotes - 631 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:2020703; locus_type=protein_coding
AT1G03550.1	chr1:000885851	0.0	C/885851-885937,886035-886100,886196-886244,886393-886460,886554-886599,886696-886789,886878-886940,887015-887137,887225-887258,887368-887430,887531-887635,887725-887778	AT1G03550.1 CDS AT1G03550 ID=AT1G03550.1; Parent=AT1G03550; Name=AT1G03550.1; Note=Secretory carrier membrane protein (SCAMP) family protein; conf_class=1; symbol=SCAMP4; Alias=AtSCAMP4; full_name=Secretory carrier membrane protein 4; computational_description=Secretory carrier membrane protein (SCAMP) family protein%3B FUNCTIONS IN: transmembrane transporter activity%3B INVOLVED IN: protein transport%3B LOCATED IN: integral to membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: SCAMP (InterPro:IPR007273)%3B BEST Arabidopsis thaliana protein match is: Secretory carrier membrane protein (SCAMP) family protein (TAIR:AT2G20840.1)%3B Has 670 Blast hits to 668 proteins in 104 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 376%3B Fungi - 14%3B Plants - 226%3B Viruses - 0%3B Other Eukaryotes - 54 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:18775970, PMID:21633931, PMID:22253603, locus:2020828; locus_type=protein_coding
AT1G03550.2	chr1:000885851	0.0	C/885851-885937,886035-886100,886196-886244,886393-886460,886554-886599,886696-886789,886878-886940,887015-887137,887225-887303	AT1G03550.2 CDS AT1G03550 ID=AT1G03550.2; Parent=AT1G03550; Name=AT1G03550.2; Note=Secretory carrier membrane protein (SCAMP) family protein; symbol=SCAMP4; Alias=AtSCAMP4; full_name=Secretory carrier membrane protein 4; computational_description=Secretory carrier membrane protein (SCAMP) family protein%3B FUNCTIONS IN: transmembrane transporter activity%3B INVOLVED IN: protein transport%3B LOCATED IN: integral to membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: SCAMP (InterPro:IPR007273)%3B BEST Arabidopsis thaliana protein match is: Secretory carrier membrane protein (SCAMP) family protein (TAIR:AT2G20840.1)%3B Has 670 Blast hits to 668 proteins in 104 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 376%3B Fungi - 14%3B Plants - 226%3B Viruses - 0%3B Other Eukaryotes - 54 (source: NCBI BLink).; Dbxref=PMID:18775970, PMID:21633931, PMID:22253603, locus:2020828; locus_type=protein_coding
AT1G03550.3	chr1:000885851	0.0	C/885851-885937,886035-886100,886196-886244,886393-886460,886554-886599,886696-886789,886878-886940,887015-887137,887225-887258,887368-887412	AT1G03550.3 CDS AT1G03550 ID=AT1G03550.3; Parent=AT1G03550; Name=AT1G03550.3; Note=Secretory carrier membrane protein (SCAMP) family protein; symbol=SCAMP4; Alias=AtSCAMP4; full_name=Secretory carrier membrane protein 4; computational_description=Secretory carrier membrane protein (SCAMP) family protein%3B FUNCTIONS IN: transmembrane transporter activity%3B INVOLVED IN: protein transport%3B LOCATED IN: integral to membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: SCAMP (InterPro:IPR007273)%3B BEST Arabidopsis thaliana protein match is: Secretory carrier membrane protein (SCAMP) family protein (TAIR:AT2G20840.1)%3B Has 670 Blast hits to 668 proteins in 104 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 376%3B Fungi - 14%3B Plants - 226%3B Viruses - 0%3B Other Eukaryotes - 54 (source: NCBI BLink).; Dbxref=PMID:18775970, PMID:21633931, PMID:22253603, locus:2020828; locus_type=protein_coding
AT1G03545.1	chr1:000885941	0.0	W/885941-887906	AT1G03545.1 antisense_lncRNA AT1G03545 ID=AT1G03545.1; Parent=AT1G03545; curator_summary=Potential natural antisense gene%2C locus overlaps with AT1G03550; Dbxref=locus:6530298129; Name=AT1G03545.1; description=Natural antisense transcript overlaps with AT1G03550; Note=Natural antisense transcript overlaps with AT1G03550; locus_type=antisense_long_noncoding_rna
AT1G03545.2	chr1:000885941	0.0	W/885941-887972	AT1G03545.2 antisense_lncRNA AT1G03545 ID=AT1G03545.2; Parent=AT1G03545; Name=AT1G03545.2; description=Natural antisense transcript overlaps with AT1G03550; curator_summary=Potential natural antisense gene%2C locus overlaps with AT1G03550; Note=Natural antisense transcript overlaps with AT1G03550; Dbxref=locus:6530298129; locus_type=antisense_long_noncoding_rna
AT1G03550.4	chr1:000885993	0.0	C/885993-886100,886196-886244,886393-886460,886554-886599,886696-886789,886878-886940,887015-887137,887225-887258,887368-887430,887531-887635,887725-887778	AT1G03550.4 CDS AT1G03550 ID=AT1G03550.4; Parent=AT1G03550; Name=AT1G03550.4; Note=Secretory carrier membrane protein (SCAMP) family protein; symbol=SCAMP4; Alias=AtSCAMP4; full_name=Secretory carrier membrane protein 4; computational_description=Secretory carrier membrane protein (SCAMP) family protein%3B FUNCTIONS IN: transmembrane transporter activity%3B INVOLVED IN: protein transport%3B LOCATED IN: integral to membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: SCAMP (InterPro:IPR007273)%3B BEST Arabidopsis thaliana protein match is: Secretory carrier membrane protein (SCAMP) family protein (TAIR:AT2G20840.1)%3B Has 670 Blast hits to 668 proteins in 104 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 376%3B Fungi - 14%3B Plants - 226%3B Viruses - 0%3B Other Eukaryotes - 54 (source: NCBI BLink).; Dbxref=PMID:18775970, PMID:21633931, PMID:22253603, locus:2020828; locus_type=protein_coding
AT1G03550.5	chr1:000886148	0.0	C/886148-886244,886393-886460,886554-886599,886696-886789,886878-886940,887015-887137,887225-887258,887368-887430,887531-887635,887725-887778	AT1G03550.5 CDS AT1G03550 ID=AT1G03550.5; Parent=AT1G03550; Name=AT1G03550.5; Note=Secretory carrier membrane protein (SCAMP) family protein; symbol=SCAMP4; Alias=AtSCAMP4; full_name=Secretory carrier membrane protein 4; computational_description=Secretory carrier membrane protein (SCAMP) family protein%3B FUNCTIONS IN: transmembrane transporter activity%3B INVOLVED IN: protein transport%3B LOCATED IN: integral to membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: SCAMP (InterPro:IPR007273)%3B BEST Arabidopsis thaliana protein match is: Secretory carrier membrane protein (SCAMP) family protein (TAIR:AT2G20840.1)%3B Has 670 Blast hits to 668 proteins in 104 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 376%3B Fungi - 14%3B Plants - 226%3B Viruses - 0%3B Other Eukaryotes - 54 (source: NCBI BLink).; Dbxref=PMID:18775970, PMID:21633931, PMID:22253603, locus:2020828; locus_type=protein_coding
AT1G03550.6	chr1:000886389	0.0	C/886389-886460,886554-886599,886696-886789,886878-886940,887015-887137,887225-887258,887368-887430,887531-887635,887725-887778	AT1G03550.6 CDS AT1G03550 ID=AT1G03550.6; Parent=AT1G03550; Name=AT1G03550.6; Note=Secretory carrier membrane protein (SCAMP) family protein; symbol=SCAMP4; Alias=AtSCAMP4; full_name=Secretory carrier membrane protein 4; computational_description=Secretory carrier membrane protein (SCAMP) family protein%3B FUNCTIONS IN: transmembrane transporter activity%3B INVOLVED IN: protein transport%3B LOCATED IN: integral to membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: SCAMP (InterPro:IPR007273)%3B BEST Arabidopsis thaliana protein match is: Secretory carrier membrane protein (SCAMP) family protein (TAIR:AT2G20840.1)%3B Has 670 Blast hits to 668 proteins in 104 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 376%3B Fungi - 14%3B Plants - 226%3B Viruses - 0%3B Other Eukaryotes - 54 (source: NCBI BLink).; Dbxref=PMID:18775970, PMID:21633931, PMID:22253603, locus:2020828; locus_type=protein_coding
AT1G03550.7	chr1:000886527	0.0	C/886527-886599,886696-886789,886878-886940,887015-887137,887225-887258,887368-887430,887531-887635,887725-887778	AT1G03550.7 CDS AT1G03550 ID=AT1G03550.7; Parent=AT1G03550; Name=AT1G03550.7; Note=Secretory carrier membrane protein (SCAMP) family protein; symbol=SCAMP4; Alias=AtSCAMP4; full_name=Secretory carrier membrane protein 4; computational_description=Secretory carrier membrane protein (SCAMP) family protein%3B FUNCTIONS IN: transmembrane transporter activity%3B INVOLVED IN: protein transport%3B LOCATED IN: integral to membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: SCAMP (InterPro:IPR007273)%3B BEST Arabidopsis thaliana protein match is: Secretory carrier membrane protein (SCAMP) family protein (TAIR:AT2G20840.1)%3B Has 670 Blast hits to 668 proteins in 104 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 376%3B Fungi - 14%3B Plants - 226%3B Viruses - 0%3B Other Eukaryotes - 54 (source: NCBI BLink).; Dbxref=PMID:18775970, PMID:21633931, PMID:22253603, locus:2020828; locus_type=protein_coding
AT1G08825.1	chr1:000889095	0.0	C/889095-890027	AT1G08825.1 transcript_region AT1G08825 ID=AT1G08825.1; Parent=AT1G08825; computational_description=novel transcribed region; Name=AT1G08825.1; locus_type=novel_transcribed_region
AT1G03560.1	chr1:000890428	0.0	C/890428-892410	AT1G03560.1 CDS AT1G03560 ID=AT1G03560.1; Parent=AT1G03560; Name=AT1G03560.1; Note=Pentatricopeptide repeat (PPR-like) superfamily protein; conf_class=1; computational_description=Pentatricopeptide repeat (PPR-like) superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G39710.1)%3B Has 53521 Blast hits to 15193 proteins in 316 species: Archae - 3%3B Bacteria - 91%3B Metazoa - 613%3B Fungi - 824%3B Plants - 50230%3B Viruses - 0%3B Other Eukaryotes - 1760 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16709272, PMID:16951057, locus:2020808; locus_type=protein_coding
AT1G03570.1	chr1:000892514	0.0	W/892514-892585	AT1G03570.1 tRNA AT1G03570 ID=AT1G03570.1; Parent=AT1G03570; Note=tRNA-Gln; computational_description=tRNA-Gln (anticodon: CTG); Dbxref=PMID:8980477, PMID:23066098, PMID:8980477, locus:3688779; Name=AT1G03570.1; locus_type=pre_trna
AT1G03580.1	chr1:000892885	0.0	W/892885-894172	AT1G03580.1 pseudogenic_transcript AT1G03580 ID=AT1G03580.1; Parent=AT1G03580; Name=AT1G03580.1; Note=pseudogene; computational_description=pseudogene%2C meprin and TRAF homology (MATH) domain protein -related%2C weak similarity to ubiquitin-specific protease 12 (Arabidopsis thaliana) GI:11993471%3B contains weak hit to Pfam PF00917: MATH domain; Dbxref=locus:504956281; locus_type=pseudogene
AT1G03580.2	chr1:000893017	0.0	W/893017-894194	AT1G03580.2 pseudogenic_transcript AT1G03580 ID=AT1G03580.2; Parent=AT1G03580; Name=AT1G03580.2; Note=pseudogene; computational_description=pseudogene%2C meprin and TRAF homology (MATH) domain protein -related%2C weak similarity to ubiquitin-specific protease 12 (Arabidopsis thaliana) GI:11993471%3B contains weak hit to Pfam PF00917: MATH domain; Dbxref=locus:504956281; locus_type=pseudogene
AT1G03590.1	chr1:000894480	0.0	C/894480-894944,895030-895253,895355-895472,895583-895921,896015-896257	AT1G03590.1 CDS AT1G03590 ID=AT1G03590.1; Parent=AT1G03590; Name=AT1G03590.1; Note=Protein phosphatase 2C family protein; conf_class=4; computational_description=Protein phosphatase 2C family protein%3B FUNCTIONS IN: protein serine/threonine phosphatase activity%2C catalytic activity%3B INVOLVED IN: N-terminal protein myristoylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932)%2C Protein phosphatase 2C (InterPro:IPR015655)%2C Protein phosphatase 2C%2C N-terminal (InterPro:IPR014045)%3B BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT4G03415.2)%3B Has 5799 Blast hits to 5797 proteins in 294 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 1418%3B Fungi - 691%3B Plants - 2505%3B Viruses - 5%3B Other Eukaryotes - 1176 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:12912986, PMID:15130549, PMID:19021904, PMID:22645532, locus:2020863; locus_type=protein_coding
AT1G03600.1	chr1:000898916	0.0	W/898916-899440	AT1G03600.1 CDS AT1G03600 ID=AT1G03600.1; Parent=AT1G03600; Name=AT1G03600.1; Note=photosystem II family protein; conf_class=1; symbol=PSB27; computational_description=PSB27%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: photosystem II repair%3B LOCATED IN: thylakoid%2C chloroplast thylakoid membrane%2C chloroplast thylakoid lumen%2C chloroplast photosystem II%2C chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B Has 273 Blast hits to 273 proteins in 82 species: Archae - 0%3B Bacteria - 114%3B Metazoa - 0%3B Fungi - 0%3B Plants - 63%3B Viruses - 0%3B Other Eukaryotes - 96 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11719511, PMID:11826309, PMID:14576160, PMID:14729914, PMID:15322131, PMID:16897475, PMID:17705847, PMID:17827269, PMID:18431481, PMID:18650403, PMID:20444695, PMID:19697957, PMID:25605904, locus:2020788; locus_type=protein_coding
AT1G03610.1	chr1:000901304	0.0	W/901304-901396,901486-901706,901891-902077,902170-902347,902425-902672	AT1G03610.1 CDS AT1G03610 ID=AT1G03610.1; Parent=AT1G03610; Name=AT1G03610.1; Note=plant/protein (DUF789); conf_class=2; computational_description=Protein of unknown function (DUF789)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF789 (InterPro:IPR008507)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF789) (TAIR:AT4G03420.1)%3B Has 266 Blast hits to 262 proteins in 19 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 263%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16081496, PMID:16258011, PMID:18775970, locus:2020768; locus_type=protein_coding
AT1G03610.2	chr1:000901304	0.0	W/901304-901396,901486-901706,901891-902077,902170-902406	AT1G03610.2 CDS AT1G03610 ID=AT1G03610.2; Parent=AT1G03610; Name=AT1G03610.2; Note=plant/protein (DUF789); computational_description=Protein of unknown function (DUF789)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF789 (InterPro:IPR008507)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF789) (TAIR:AT4G03420.1)%3B Has 266 Blast hits to 262 proteins in 19 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 263%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).; Dbxref=PMID:16081496, PMID:16258011, PMID:18775970, locus:2020768; locus_type=protein_coding
AT1TE02950	chr1:000903047	0.0	C/903047-903474	AT1TE02950 transposable_element AT1TE02950 ID=AT1TE02950; Name=AT1TE02950; Alias=ATREP19
AT1G03620.10	chr1:000904319	0.0	C/904319-904420,904521-904615,904728-904775,904881-905004,905119-905173,905268-905383,905497-905565,905667-905784,905943-906013	AT1G03620.10 CDS AT1G03620 ID=AT1G03620.10; Parent=AT1G03620; Name=AT1G03620.10; Note=ELMO/CED-12 family protein; Dbxref=PMID:18775970, PMID:20736450, locus:2020753; computational_description=ELMO/CED-12 family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: phagocytosis%3B LOCATED IN: cytoskeleton%3B EXPRESSED IN: 16 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Engulfment/cell motility%2C ELMO (InterPro:IPR006816)%3B BEST Arabidopsis thaliana protein match is: ELMO/CED-12 family protein (TAIR:AT3G03610.1)%3B Has 828 Blast hits to 828 proteins in 138 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 491%3B Fungi - 41%3B Plants - 178%3B Viruses - 0%3B Other Eukaryotes - 118 (source: NCBI BLink).; locus_type=protein_coding
AT1G03620.11	chr1:000904319	0.0	C/904319-904420,904521-904615,904728-904775,904881-905004,905119-905173,905268-905383,905497-905565,905667-905784,905943-906013	AT1G03620.11 CDS AT1G03620 ID=AT1G03620.11; Parent=AT1G03620; Name=AT1G03620.11; Note=ELMO/CED-12 family protein; Dbxref=PMID:18775970, PMID:20736450, locus:2020753; computational_description=ELMO/CED-12 family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: phagocytosis%3B LOCATED IN: cytoskeleton%3B EXPRESSED IN: 16 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Engulfment/cell motility%2C ELMO (InterPro:IPR006816)%3B BEST Arabidopsis thaliana protein match is: ELMO/CED-12 family protein (TAIR:AT3G03610.1)%3B Has 828 Blast hits to 828 proteins in 138 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 491%3B Fungi - 41%3B Plants - 178%3B Viruses - 0%3B Other Eukaryotes - 118 (source: NCBI BLink).; locus_type=protein_coding
AT1G03620.12	chr1:000904319	0.0	C/904319-904420,904521-904615,904728-904775,904881-905004,905119-905173,905268-905383,905497-905565,905667-905784,905911-906023,906314-906367	AT1G03620.12 CDS AT1G03620 ID=AT1G03620.12; Parent=AT1G03620; Name=AT1G03620.12; Note=ELMO/CED-12 family protein; computational_description=ELMO/CED-12 family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: phagocytosis%3B LOCATED IN: cytoskeleton%3B EXPRESSED IN: 16 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Engulfment/cell motility%2C ELMO (InterPro:IPR006816)%3B BEST Arabidopsis thaliana protein match is: ELMO/CED-12 family protein (TAIR:AT3G03610.1)%3B Has 828 Blast hits to 828 proteins in 138 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 491%3B Fungi - 41%3B Plants - 178%3B Viruses - 0%3B Other Eukaryotes - 118 (source: NCBI BLink).; Dbxref=PMID:18775970, PMID:20736450, locus:2020753; locus_type=protein_coding
AT1G03620.13	chr1:000904319	0.0	C/904319-904420,904521-904615,904728-904775,904881-905004,905119-905173,905268-905383,905497-905565,905667-905784,905943-906013	AT1G03620.13 CDS AT1G03620 ID=AT1G03620.13; Parent=AT1G03620; Name=AT1G03620.13; Note=ELMO/CED-12 family protein; Dbxref=PMID:18775970, PMID:20736450, locus:2020753; computational_description=ELMO/CED-12 family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: phagocytosis%3B LOCATED IN: cytoskeleton%3B EXPRESSED IN: 16 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Engulfment/cell motility%2C ELMO (InterPro:IPR006816)%3B BEST Arabidopsis thaliana protein match is: ELMO/CED-12 family protein (TAIR:AT3G03610.1)%3B Has 828 Blast hits to 828 proteins in 138 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 491%3B Fungi - 41%3B Plants - 178%3B Viruses - 0%3B Other Eukaryotes - 118 (source: NCBI BLink).; locus_type=protein_coding
AT1G03620.1	chr1:000904319	0.0	C/904319-904420,904521-904615,904728-904775,904881-905004,905119-905173,905268-905383,905497-905565,905667-905784,905943-906013	AT1G03620.1 CDS AT1G03620 ID=AT1G03620.1; Parent=AT1G03620; Name=AT1G03620.1; Note=ELMO/CED-12 family protein; conf_class=3; computational_description=ELMO/CED-12 family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: phagocytosis%3B LOCATED IN: cytoskeleton%3B EXPRESSED IN: 16 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Engulfment/cell motility%2C ELMO (InterPro:IPR006816)%3B BEST Arabidopsis thaliana protein match is: ELMO/CED-12 family protein (TAIR:AT3G03610.1)%3B Has 828 Blast hits to 828 proteins in 138 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 491%3B Fungi - 41%3B Plants - 178%3B Viruses - 0%3B Other Eukaryotes - 118 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, PMID:20736450, locus:2020753; locus_type=protein_coding
AT1G03620.2	chr1:000904319	0.0	C/904319-904420,904521-904615,904728-904775,904881-905004,905119-905173,905268-905383,905497-905565,905667-905759	AT1G03620.2 CDS AT1G03620 ID=AT1G03620.2; Parent=AT1G03620; Name=AT1G03620.2; Note=ELMO/CED-12 family protein; computational_description=ELMO/CED-12 family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: phagocytosis%3B LOCATED IN: cytoskeleton%3B EXPRESSED IN: 16 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Engulfment/cell motility%2C ELMO (InterPro:IPR006816)%3B BEST Arabidopsis thaliana protein match is: ELMO/CED-12 family protein (TAIR:AT3G03610.1)%3B Has 828 Blast hits to 828 proteins in 138 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 491%3B Fungi - 41%3B Plants - 178%3B Viruses - 0%3B Other Eukaryotes - 118 (source: NCBI BLink).; Dbxref=PMID:18775970, PMID:20736450, locus:2020753; locus_type=protein_coding
AT1G03620.3	chr1:000904319	0.0	C/904319-904420,904521-904615,904728-904775,904881-905004,905119-905173,905268-905383,905497-905565,905667-905759	AT1G03620.3 CDS AT1G03620 ID=AT1G03620.3; Parent=AT1G03620; Name=AT1G03620.3; Note=ELMO/CED-12 family protein; computational_description=ELMO/CED-12 family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: phagocytosis%3B LOCATED IN: cytoskeleton%3B EXPRESSED IN: 16 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Engulfment/cell motility%2C ELMO (InterPro:IPR006816)%3B BEST Arabidopsis thaliana protein match is: ELMO/CED-12 family protein (TAIR:AT3G03610.1)%3B Has 828 Blast hits to 828 proteins in 138 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 491%3B Fungi - 41%3B Plants - 178%3B Viruses - 0%3B Other Eukaryotes - 118 (source: NCBI BLink).; Dbxref=PMID:18775970, PMID:20736450, locus:2020753; locus_type=protein_coding
AT1G03620.4	chr1:000904319	0.0	C/904319-904420,904521-904615,904728-904775,904881-905004,905119-905173,905268-905383,905497-905565,905667-905784,905943-906013	AT1G03620.4 CDS AT1G03620 ID=AT1G03620.4; Parent=AT1G03620; Name=AT1G03620.4; Note=ELMO/CED-12 family protein; Dbxref=PMID:18775970, PMID:20736450, locus:2020753; computational_description=ELMO/CED-12 family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: phagocytosis%3B LOCATED IN: cytoskeleton%3B EXPRESSED IN: 16 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Engulfment/cell motility%2C ELMO (InterPro:IPR006816)%3B BEST Arabidopsis thaliana protein match is: ELMO/CED-12 family protein (TAIR:AT3G03610.1)%3B Has 828 Blast hits to 828 proteins in 138 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 491%3B Fungi - 41%3B Plants - 178%3B Viruses - 0%3B Other Eukaryotes - 118 (source: NCBI BLink).; locus_type=protein_coding
AT1G03620.5	chr1:000904319	0.0	C/904319-904420,904521-904615,904728-904775,904881-905004,905119-905173,905268-905383,905497-905565,905667-905784,905943-906013	AT1G03620.5 CDS AT1G03620 ID=AT1G03620.5; Parent=AT1G03620; Name=AT1G03620.5; Note=ELMO/CED-12 family protein; Dbxref=PMID:18775970, PMID:20736450, locus:2020753; computational_description=ELMO/CED-12 family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: phagocytosis%3B LOCATED IN: cytoskeleton%3B EXPRESSED IN: 16 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Engulfment/cell motility%2C ELMO (InterPro:IPR006816)%3B BEST Arabidopsis thaliana protein match is: ELMO/CED-12 family protein (TAIR:AT3G03610.1)%3B Has 828 Blast hits to 828 proteins in 138 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 491%3B Fungi - 41%3B Plants - 178%3B Viruses - 0%3B Other Eukaryotes - 118 (source: NCBI BLink).; locus_type=protein_coding
AT1G03620.6	chr1:000904319	0.0	C/904319-904420,904521-904615,904728-904775,904881-905004,905119-905173,905268-905383,905497-905565,905667-905759	AT1G03620.6 CDS AT1G03620 ID=AT1G03620.6; Parent=AT1G03620; Name=AT1G03620.6; Note=ELMO/CED-12 family protein; computational_description=ELMO/CED-12 family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: phagocytosis%3B LOCATED IN: cytoskeleton%3B EXPRESSED IN: 16 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Engulfment/cell motility%2C ELMO (InterPro:IPR006816)%3B BEST Arabidopsis thaliana protein match is: ELMO/CED-12 family protein (TAIR:AT3G03610.1)%3B Has 828 Blast hits to 828 proteins in 138 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 491%3B Fungi - 41%3B Plants - 178%3B Viruses - 0%3B Other Eukaryotes - 118 (source: NCBI BLink).; Dbxref=PMID:18775970, PMID:20736450, locus:2020753; locus_type=protein_coding
AT1G03620.7	chr1:000904319	0.0	C/904319-904420,904521-904615,904728-904775,904881-905004,905119-905173,905268-905383,905497-905565,905667-905784,905943-906013	AT1G03620.7 CDS AT1G03620 ID=AT1G03620.7; Parent=AT1G03620; Name=AT1G03620.7; Note=ELMO/CED-12 family protein; Dbxref=PMID:18775970, PMID:20736450, locus:2020753; computational_description=ELMO/CED-12 family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: phagocytosis%3B LOCATED IN: cytoskeleton%3B EXPRESSED IN: 16 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Engulfment/cell motility%2C ELMO (InterPro:IPR006816)%3B BEST Arabidopsis thaliana protein match is: ELMO/CED-12 family protein (TAIR:AT3G03610.1)%3B Has 828 Blast hits to 828 proteins in 138 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 491%3B Fungi - 41%3B Plants - 178%3B Viruses - 0%3B Other Eukaryotes - 118 (source: NCBI BLink).; locus_type=protein_coding
AT1G03620.8	chr1:000904319	0.0	C/904319-904420,904521-904615,904728-904775,904881-905004,905119-905173,905268-905383,905497-905565,905667-905784,905943-906013	AT1G03620.8 CDS AT1G03620 ID=AT1G03620.8; Parent=AT1G03620; Name=AT1G03620.8; Note=ELMO/CED-12 family protein; Dbxref=PMID:18775970, PMID:20736450, locus:2020753; computational_description=ELMO/CED-12 family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: phagocytosis%3B LOCATED IN: cytoskeleton%3B EXPRESSED IN: 16 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Engulfment/cell motility%2C ELMO (InterPro:IPR006816)%3B BEST Arabidopsis thaliana protein match is: ELMO/CED-12 family protein (TAIR:AT3G03610.1)%3B Has 828 Blast hits to 828 proteins in 138 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 491%3B Fungi - 41%3B Plants - 178%3B Viruses - 0%3B Other Eukaryotes - 118 (source: NCBI BLink).; locus_type=protein_coding
AT1G03620.9	chr1:000904319	0.0	C/904319-904420,904521-904615,904728-904775,904881-905004,905119-905173,905268-905383,905497-905565,905667-905784,905943-906013	AT1G03620.9 CDS AT1G03620 ID=AT1G03620.9; Parent=AT1G03620; Name=AT1G03620.9; Note=ELMO/CED-12 family protein; Dbxref=PMID:18775970, PMID:20736450, locus:2020753; computational_description=ELMO/CED-12 family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: phagocytosis%3B LOCATED IN: cytoskeleton%3B EXPRESSED IN: 16 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Engulfment/cell motility%2C ELMO (InterPro:IPR006816)%3B BEST Arabidopsis thaliana protein match is: ELMO/CED-12 family protein (TAIR:AT3G03610.1)%3B Has 828 Blast hits to 828 proteins in 138 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 491%3B Fungi - 41%3B Plants - 178%3B Viruses - 0%3B Other Eukaryotes - 118 (source: NCBI BLink).; locus_type=protein_coding
AT1G03630.1	chr1:000907699	0.0	W/907699-907755,907849-907947,908033-908570,908655-909010,909090-909245	AT1G03630.1 CDS AT1G03630 ID=AT1G03630.1; Parent=AT1G03630; Name=AT1G03630.1; Note=protochlorophyllide oxidoreductase C; curator_summary=Encodes for a protein with protochlorophyllide oxidoreductase activity. The enzyme is NADPH- and light-dependent.; conf_class=2; symbol=POR C; Alias=PORC; full_name=protochlorophyllide oxidoreductase C; computational_description=protochlorophyllide oxidoreductase C (POR C)%3B FUNCTIONS IN: oxidoreductase activity%2C NADPH dehydrogenase activity%2C protochlorophyllide reductase activity%3B INVOLVED IN: chlorophyll biosynthetic process%3B LOCATED IN: chloroplast thylakoid membrane%2C chloroplast%2C chloroplast envelope%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040)%2C Light-dependent protochlorophyllide reductase (InterPro:IPR005979)%2C Glucose/ribitol dehydrogenase (InterPro:IPR002347)%2C Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198)%3B BEST Arabidopsis thaliana protein match is: protochlorophyllide oxidoreductase A (TAIR:AT5G54190.1)%3B Has 21168 Blast hits to 21148 proteins in 2215 species: Archae - 200%3B Bacteria - 11840%3B Metazoa - 1905%3B Fungi - 1885%3B Plants - 1089%3B Viruses - 0%3B Other Eukaryotes - 4249 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10838072, PMID:9808724, PMID:9490750, PMID:9351249, PMID:8790286, PMID:8624514, PMID:8624438, PMID:7659751, PMID:1581573, PMID:1714319, PMID:11115885, PMID:11800397, PMID:11785941, PMID:11866453, PMID:16228453, PMID:12242369, PMID:12226519, PMID:12848821, PMID:14581621, PMID:14688290, PMID:15322131, PMID:15546351, PMID:15842619, PMID:17261815, PMID:18591656, PMID:18650403, PMID:19222806, PMID:17202255, PMID:18441218, PMID:20012672, PMID:22031838, PMID:22102866, PMID:22278767, PMID:22212719, PMID:25101599, PMID:25659137, locus:2020738; locus_type=protein_coding
AT1G03630.2	chr1:000907699	0.0	W/907699-907755,907849-907947,908039-908570,908655-909010,909090-909245	AT1G03630.2 CDS AT1G03630 ID=AT1G03630.2; Parent=AT1G03630; Name=AT1G03630.2; Note=protochlorophyllide oxidoreductase C; curator_summary=Encodes for a protein with protochlorophyllide oxidoreductase activity. The enzyme is NADPH- and light-dependent.; conf_class=2; symbol=POR C; Alias=PORC; full_name=protochlorophyllide oxidoreductase C; computational_description=protochlorophyllide oxidoreductase C (POR C)%3B FUNCTIONS IN: oxidoreductase activity%2C NADPH dehydrogenase activity%2C protochlorophyllide reductase activity%3B INVOLVED IN: chlorophyll biosynthetic process%3B LOCATED IN: chloroplast thylakoid membrane%2C chloroplast%2C chloroplast envelope%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040)%2C Light-dependent protochlorophyllide reductase (InterPro:IPR005979)%2C Glucose/ribitol dehydrogenase (InterPro:IPR002347)%2C Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198)%3B BEST Arabidopsis thaliana protein match is: protochlorophyllide oxidoreductase A (TAIR:AT5G54190.1)%3B Has 21168 Blast hits to 21148 proteins in 2215 species: Archae - 200%3B Bacteria - 11840%3B Metazoa - 1905%3B Fungi - 1885%3B Plants - 1089%3B Viruses - 0%3B Other Eukaryotes - 4249 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10838072, PMID:9808724, PMID:9490750, PMID:9351249, PMID:8790286, PMID:8624514, PMID:8624438, PMID:7659751, PMID:1581573, PMID:1714319, PMID:11115885, PMID:11800397, PMID:11785941, PMID:11866453, PMID:16228453, PMID:12242369, PMID:12226519, PMID:12848821, PMID:14581621, PMID:14688290, PMID:15322131, PMID:15546351, PMID:15842619, PMID:17261815, PMID:18591656, PMID:18650403, PMID:19222806, PMID:17202255, PMID:18441218, PMID:20012672, PMID:22031838, PMID:22102866, PMID:22278767, PMID:22212719, PMID:25101599, PMID:25659137, locus:2020738; locus_type=protein_coding
AT1G03640.1	chr1:000909811	0.0	C/909811-909883	AT1G03640.1 tRNA AT1G03640 ID=AT1G03640.1; Parent=AT1G03640; Note=tRNA-Phe; computational_description=tRNA-Phe (anticodon: GAA); Dbxref=PMID:8980477, PMID:23066098, PMID:8980477, locus:3688782; Name=AT1G03640.1; locus_type=pre_trna
AT1G03650.1	chr1:000910249	0.0	C/910249-910481,910860-911103	AT1G03650.1 CDS AT1G03650 ID=AT1G03650.1; Parent=AT1G03650; Name=AT1G03650.1; Note=Acyl-CoA N-acyltransferases (NAT) superfamily protein; conf_class=1; computational_description=Acyl-CoA N-acyltransferases (NAT) superfamily protein%3B FUNCTIONS IN: N-acetyltransferase activity%3B INVOLVED IN: metabolic process%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase%2C C-terminal (InterPro:IPR022610)%2C GCN5-related N-acetyltransferase (InterPro:IPR000182)%2C Acyl-CoA N-acyltransferase (InterPro:IPR016181)%3B Has 3295 Blast hits to 3295 proteins in 1287 species: Archae - 200%3B Bacteria - 2223%3B Metazoa - 217%3B Fungi - 220%3B Plants - 88%3B Viruses - 0%3B Other Eukaryotes - 347 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:20736450, locus:2020718; locus_type=protein_coding
AT1G03660.1	chr1:000911436	0.0	C/911436-911759	AT1G03660.1 CDS AT1G03660 ID=AT1G03660.1; Parent=AT1G03660; Name=AT1G03660.1; Note=Ankyrin-repeat containing protein; conf_class=1; computational_description=Ankyrin-repeat containing protein%3B BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT1G03670.1)%3B Has 105 Blast hits to 104 proteins in 3 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 105%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14576160, PMID:17227549, PMID:18650403, PMID:20736450, locus:2020848; locus_type=protein_coding
AT1G03660.2	chr1:000911436	0.0	C/911436-911759	AT1G03660.2 CDS AT1G03660 ID=AT1G03660.2; Parent=AT1G03660; Name=AT1G03660.2; Note=Ankyrin-repeat containing protein; Dbxref=PMID:14576160, PMID:17227549, PMID:18650403, PMID:20736450, locus:2020848; computational_description=Ankyrin-repeat containing protein%3B BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT1G03670.1)%3B Has 105 Blast hits to 104 proteins in 3 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 105%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; locus_type=protein_coding
AT1TE02980	chr1:000912339	0.0	W/912339-913217	AT1TE02980 transposable_element AT1TE02980 ID=AT1TE02980; Name=AT1TE02980; Alias=ATREP15
AT1TE02985	chr1:000913218	0.0	C/913218-913345	AT1TE02985 transposable_element AT1TE02985 ID=AT1TE02985; Name=AT1TE02985; Alias=BRODYAGA2
AT1G04203.1	chr1:000913390	0.0	W/913390-913595	AT1G04203.1 lnc_RNA AT1G04203 ID=AT1G04203.1; Parent=AT1G04203; Name=AT1G04203.1; locus_type=long_noncoding_rna
AT1G03670.1	chr1:000914222	0.0	C/914222-914839,914909-915456,915538-916222	AT1G03670.1 CDS AT1G03670 ID=AT1G03670.1; Parent=AT1G03670; Name=AT1G03670.1; Note=ankyrin repeat family protein; curator_summary=Ankyrin repeat containing protein; conf_class=9; computational_description=ankyrin repeat family protein%3B CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683)%2C Ankyrin repeat (InterPro:IPR002110)%3B BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT4G03500.1)%3B Has 38664 Blast hits to 17395 proteins in 690 species: Archae - 39%3B Bacteria - 2692%3B Metazoa - 19825%3B Fungi - 3120%3B Plants - 3302%3B Viruses - 203%3B Other Eukaryotes - 9483 (source: NCBI BLink).; conf_rating=*; Dbxref=PMID:17656846, locus:2020833; locus_type=protein_coding
AT1G03680.1	chr1:000916990	0.0	C/916990-917303,917640-917865	AT1G03680.1 CDS AT1G03680 ID=AT1G03680.1; Parent=AT1G03680; Name=AT1G03680.1; Note=thioredoxin M-type 1; curator_summary=encodes a chloroplast thioredoxin similar to prokaryotic thioredoxins.; conf_class=2; symbol=THM1; Alias=ATHM1, thioredoxin M-type 1, ATM1, ARABIDOPSIS THIOREDOXIN M-TYPE 1, TRX-M1, THIOREDOXIN M-TYPE 1; full_name=thioredoxin M-type 1; computational_description=thioredoxin M-type 1 (THM1)%3B FUNCTIONS IN: enzyme activator activity%3B INVOLVED IN: response to oxidative stress%2C response to cold%2C positive regulation of catalytic activity%3B LOCATED IN: thylakoid%2C apoplast%2C stromule%2C chloroplast%2C chloroplast stroma%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335)%2C Thioredoxin%2C core (InterPro:IPR015467)%2C Thioredoxin domain (InterPro:IPR013766)%2C Thioredoxin%2C conserved site (InterPro:IPR017937)%2C Thioredoxin (InterPro:IPR005746)%2C Thioredoxin-like subdomain (InterPro:IPR006662)%2C Thioredoxin-like (InterPro:IPR017936)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT4G03520.1)%3B Has 21675 Blast hits to 20380 proteins in 3008 species: Archae - 297%3B Bacteria - 11532%3B Metazoa - 2886%3B Fungi - 1120%3B Plants - 1860%3B Viruses - 8%3B Other Eukaryotes - 3972 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10580150, PMID:11169189, PMID:11826309, PMID:16923014, PMID:18650403, PMID:19259774, PMID:22442409, locus:2020813; locus_type=protein_coding
AT1G03687.1	chr1:000918308	0.0	W/918308-918601,918868-919008,919096-919188,919267-919393,919503-919609,919737-919817,919913-919995,920087-920306	AT1G03687.1 CDS AT1G03687 ID=AT1G03687.1; Parent=AT1G03687; Name=AT1G03687.1; Note=DTW domain-containing protein; conf_class=2; computational_description=DTW domain-containing protein%3B CONTAINS InterPro DOMAIN/s: DTW (InterPro:IPR005636)%3B Has 580 Blast hits to 580 proteins in 298 species: Archae - 0%3B Bacteria - 527%3B Metazoa - 0%3B Fungi - 0%3B Plants - 28%3B Viruses - 0%3B Other Eukaryotes - 25 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18315867, locus:2825052; locus_type=protein_coding
AT1G03687.2	chr1:000918308	0.0	W/918308-918601,918868-919008,919096-919188,919267-919393,919503-919609,919737-919817,919913-919999	AT1G03687.2 CDS AT1G03687 ID=AT1G03687.2; Parent=AT1G03687; Name=AT1G03687.2; Note=DTW domain-containing protein; conf_class=2; computational_description=DTW domain-containing protein%3B CONTAINS InterPro DOMAIN/s: DTW (InterPro:IPR005636)%3B Has 580 Blast hits to 580 proteins in 298 species: Archae - 0%3B Bacteria - 527%3B Metazoa - 0%3B Fungi - 0%3B Plants - 28%3B Viruses - 0%3B Other Eukaryotes - 25 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18315867, locus:2825052; locus_type=protein_coding
AT1G03700.1	chr1:000921038	0.0	W/921038-921195,921299-921401,921611-921844	AT1G03700.1 CDS AT1G03700 ID=AT1G03700.1; Parent=AT1G03700; Name=AT1G03700.1; Note=Uncharacterized protein family (UPF0497); conf_class=1; Alias=CASPL1C2, CASP-like protein 1C2; computational_description=Uncharacterised protein family (UPF0497)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: hypocotyl%2C flower%3B EXPRESSED DURING: petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497%2C trans-membrane plant (InterPro:IPR006702)%2C Uncharacterised protein family UPF0497%2C trans-membrane plant subgroup (InterPro:IPR006459)%3B BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT4G03540.1)%3B Has 592 Blast hits to 592 proteins in 21 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 592%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:24920445, locus:2020773; locus_type=protein_coding
AT1TE03010	chr1:000921830	0.0	W/921830-923363	AT1TE03010 transposable_element AT1TE03010 ID=AT1TE03010; Name=AT1TE03010; Alias=ATREP10D
AT1G03710.1	chr1:000923492	0.0	W/923492-923755,923828-923977,924093-924287	AT1G03710.1 CDS AT1G03710 ID=AT1G03710.1; Parent=AT1G03710; Name=AT1G03710.1; Note=Cystatin/monellin superfamily protein; conf_class=2; computational_description=Cystatin/monellin superfamily protein%3B FUNCTIONS IN: cysteine-type endopeptidase inhibitor activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 10 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Proteinase inhibitor I25%2C cystatin (InterPro:IPR000010)%2C Proteinase inhibitor I25%2C cystatin%2C conserved region (InterPro:IPR020381)%2C Cystatin-related%2C plant (InterPro:IPR006525)%3B BEST Arabidopsis thaliana protein match is: Cystatin/monellin superfamily protein (TAIR:AT4G03565.1)%3B Has 113 Blast hits to 103 proteins in 7 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 0%3B Fungi - 0%3B Plants - 106%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2020743; locus_type=protein_coding
AT1G03710.2	chr1:000923492	0.0	W/923492-923755,923828-923977,924093-924287	AT1G03710.2 CDS AT1G03710 ID=AT1G03710.2; Parent=AT1G03710; Name=AT1G03710.2; Note=Cystatin/monellin superfamily protein; conf_class=2; computational_description=Cystatin/monellin superfamily protein%3B FUNCTIONS IN: cysteine-type endopeptidase inhibitor activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 10 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Proteinase inhibitor I25%2C cystatin (InterPro:IPR000010)%2C Proteinase inhibitor I25%2C cystatin%2C conserved region (InterPro:IPR020381)%2C Cystatin-related%2C plant (InterPro:IPR006525)%3B BEST Arabidopsis thaliana protein match is: Cystatin/monellin superfamily protein (TAIR:AT4G03565.1)%3B Has 113 Blast hits to 103 proteins in 7 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 0%3B Fungi - 0%3B Plants - 106%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2020743; locus_type=protein_coding
AT1G03720.1	chr1:000924996	0.0	C/924996-925208,925279-925446,925551-925780,926160-926373	AT1G03720.1 CDS AT1G03720 ID=AT1G03720.1; Parent=AT1G03720; Name=AT1G03720.1; Note=Cysteine proteinases superfamily protein; conf_class=9; computational_description=Cysteine proteinases superfamily protein%3B FUNCTIONS IN: cysteine-type peptidase activity%3B INVOLVED IN: proteolysis%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: ovule%2C seed%3B EXPRESSED DURING: E expanded cotyledon stage%3B CONTAINS InterPro DOMAIN/s: Peptidase C1A%2C papain (InterPro:IPR013128)%2C Peptidase C1A%2C papain C-terminal (InterPro:IPR000668)%3B BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT5G17080.1)%3B Has 2156 Blast hits to 2154 proteins in 385 species: Archae - 2%3B Bacteria - 56%3B Metazoa - 1002%3B Fungi - 0%3B Plants - 537%3B Viruses - 67%3B Other Eukaryotes - 492 (source: NCBI BLink).; conf_rating=*; Dbxref=PMID:19291320, PMID:20736450, locus:2020778; locus_type=protein_coding
AT1G03720.2	chr1:000924996	0.0	C/924996-925208,925303-925446,925551-925780,926160-926373	AT1G03720.2 CDS AT1G03720 ID=AT1G03720.2; Parent=AT1G03720; Name=AT1G03720.2; Note=Cysteine proteinases superfamily protein; computational_description=Cysteine proteinases superfamily protein%3B FUNCTIONS IN: cysteine-type peptidase activity%3B INVOLVED IN: proteolysis%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: ovule%2C seed%3B EXPRESSED DURING: E expanded cotyledon stage%3B CONTAINS InterPro DOMAIN/s: Peptidase C1A%2C papain (InterPro:IPR013128)%2C Peptidase C1A%2C papain C-terminal (InterPro:IPR000668)%3B BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT5G17080.1)%3B Has 2156 Blast hits to 2154 proteins in 385 species: Archae - 2%3B Bacteria - 56%3B Metazoa - 1002%3B Fungi - 0%3B Plants - 537%3B Viruses - 67%3B Other Eukaryotes - 492 (source: NCBI BLink).; Dbxref=PMID:19291320, PMID:20736450, locus:2020778; locus_type=protein_coding
AT1G04207.1	chr1:000926989	0.0	C/926989-927200	AT1G04207.1 lnc_RNA AT1G04207 ID=AT1G04207.1; Parent=AT1G04207; Name=AT1G04207.1; locus_type=long_noncoding_rna
AT1G03730.1	chr1:000931017	0.0	C/931017-931520	AT1G03730.1 CDS AT1G03730 ID=AT1G03730.1; Parent=AT1G03730; Name=AT1G03730.1; Note=pyrroline-5-carboxylate reductase; conf_class=1; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G03600.1)%3B Has 50 Blast hits to 50 proteins in 10 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 50%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16980540, locus:2020728; locus_type=protein_coding
AT1G03740.1	chr1:000934055	0.0	W/934055-934708,934785-935069,935164-935481,935570-935797,935882-936097,936189-936572,936655-936792	AT1G03740.1 CDS AT1G03740 ID=AT1G03740.1; Parent=AT1G03740; Name=AT1G03740.1; Note=Protein kinase superfamily protein; conf_class=2; computational_description=Protein kinase superfamily protein%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%2C N-terminal protein myristoylation%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G44290.4)%3B Has 123601 Blast hits to 122225 proteins in 4475 species: Archae - 82%3B Bacteria - 13399%3B Metazoa - 46732%3B Fungi - 12742%3B Plants - 30380%3B Viruses - 449%3B Other Eukaryotes - 19817 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12912986, PMID:15078335, PMID:15686519, PMID:18184068, PMID:18650403, PMID:21477822, locus:2020708; locus_type=protein_coding
AT1G03740.2	chr1:000934055	0.0	W/934055-934708,934785-935069,935164-935481,935570-935797,935882-936097,936189-936581	AT1G03740.2 CDS AT1G03740 ID=AT1G03740.2; Parent=AT1G03740; Name=AT1G03740.2; Note=Protein kinase superfamily protein; conf_class=2; computational_description=Protein kinase superfamily protein%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%2C N-terminal protein myristoylation%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G44290.4)%3B Has 123601 Blast hits to 122225 proteins in 4475 species: Archae - 82%3B Bacteria - 13399%3B Metazoa - 46732%3B Fungi - 12742%3B Plants - 30380%3B Viruses - 449%3B Other Eukaryotes - 19817 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12912986, PMID:15078335, PMID:15686519, PMID:18184068, PMID:18650403, PMID:21477822, locus:2020708; locus_type=protein_coding
AT1TE03050	chr1:000934884	0.0	C/934884-935351	AT1TE03050 transposable_element AT1TE03050 ID=AT1TE03050; Name=AT1TE03050; Alias=ATMU6N1
AT1G04213.1	chr1:000937032	0.0	C/937032-937141	AT1G04213.1 snoRNA AT1G04213 ID=AT1G04213.1; Parent=AT1G04213; Name=AT1G04213.1; Alias=AtsnoR11; Dbxref=PMID:12520043, PMID:22820990; locus_type=small_nucleolar_rna
AT1G03743.1	chr1:000937207	0.0	C/937207-937287	AT1G03743.1 snoRNA AT1G03743 ID=AT1G03743.1; Parent=AT1G03743; computational_description=snoRNA; Dbxref=PMID:22820990, locus:3688791; Name=AT1G03743.1; Note=snoRNA; locus_type=small_nucleolar_rna
AT1G03746.1	chr1:000937401	0.0	C/937401-937485	AT1G03746.1 snoRNA AT1G03746 ID=AT1G03746.1; Parent=AT1G03746; computational_description=snoRNA; Dbxref=PMID:22820990, locus:1005716756; Name=AT1G03746.1; Note=snoRNA; locus_type=small_nucleolar_rna
AT1G03750.1	chr1:000937920	0.0	W/937920-938309,938424-938530,938634-939800,939876-940002,940092-940367,940453-940678,940773-941068	AT1G03750.1 CDS AT1G03750 ID=AT1G03750.1; Parent=AT1G03750; Name=AT1G03750.1; Note=switch 2; conf_class=2; symbol=SWI2; Alias=CHR9, CHROMATIN REMODELING 9; full_name=switch 2; computational_description=switch 2 (SWI2)%3B FUNCTIONS IN: helicase activity%2C DNA binding%2C ATP binding%2C nucleic acid binding%3B LOCATED IN: membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: DEAD-like helicase%2C N-terminal (InterPro:IPR014001)%2C DNA/RNA helicase%2C C-terminal (InterPro:IPR001650)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain (InterPro:IPR014021)%2C SNF2-related (InterPro:IPR000330)%3B BEST Arabidopsis thaliana protein match is: homolog of RAD54 (TAIR:AT3G19210.1)%3B Has 20033 Blast hits to 14398 proteins in 1655 species: Archae - 120%3B Bacteria - 5954%3B Metazoa - 4199%3B Fungi - 4321%3B Plants - 1927%3B Viruses - 177%3B Other Eukaryotes - 3335 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:16489130, PMID:16547115, PMID:17227544, PMID:18650403, PMID:18822296, PMID:18775970, PMID:20736450, locus:2024198; locus_type=protein_coding
AT1G03760.1	chr1:000941211	0.0	C/941211-941267,941366-941431,941537-941572,941694-941794,941915-941948,942031-942105,942187-942567,942653-942820,942980-943039,943123-943320	AT1G03760.1 CDS AT1G03760 ID=AT1G03760.1; Parent=AT1G03760; Name=AT1G03760.1; Note=Prefoldin chaperone subunit family protein; conf_class=2; computational_description=Prefoldin chaperone subunit family protein%3B FUNCTIONS IN: unfolded protein binding%3B INVOLVED IN: protein folding%3B LOCATED IN: prefoldin complex%3B EXPRESSED IN: pollen tube%3B CONTAINS InterPro DOMAIN/s: Prefoldin alpha-like (InterPro:IPR004127)%2C Prefoldin (InterPro:IPR009053)%3B Has 429 Blast hits to 422 proteins in 142 species: Archae - 27%3B Bacteria - 8%3B Metazoa - 215%3B Fungi - 17%3B Plants - 37%3B Viruses - 4%3B Other Eukaryotes - 121 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, PMID:20736450, locus:2024188; locus_type=protein_coding
AT1TE03080	chr1:000943765	0.0	C/943765-944176	AT1TE03080 transposable_element AT1TE03080 ID=AT1TE03080; Name=AT1TE03080; Alias=HELITRONY3
AT1G03770.1	chr1:000944772	0.0	W/944772-944982,945117-945168,945472-945530,945780-945861,945952-946072,946169-946210,946309-946812,946894-947001,947123-947293,947399-947431	AT1G03770.1 CDS AT1G03770 ID=AT1G03770.1; Parent=AT1G03770; Name=AT1G03770.1; Note=RING 1B; curator_summary=Encodes a nuclear localized protein with similarity to animal polycomb repressive core complex1 (PRC1) core component RING.Appears to function redundantly with ATRING1a%2C a close paralog. Both interact physically with CLF and LHP1 and appear to function together to repress class I KNOX gene expression.; conf_class=1; symbol=RING1B; Alias=ATRING1B, ARABIDOPSIS THALIANA RING 1B; full_name=RING 1B; computational_description=RING 1B (RING1B)%3B FUNCTIONS IN: zinc ion binding%3B INVOLVED IN: negative regulation of gene expression%2C epigenetic%3B LOCATED IN: nucleus%2C PRC1 complex%3B EXPRESSED IN: 15 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type%2C conserved site (InterPro:IPR017907)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: RING 1A (TAIR:AT5G44280.1)%3B Has 7001 Blast hits to 4383 proteins in 552 species: Archae - 10%3B Bacteria - 208%3B Metazoa - 3701%3B Fungi - 387%3B Plants - 512%3B Viruses - 317%3B Other Eukaryotes - 1866 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11983057, PMID:19097900, PMID:21060339, PMID:21701597, locus:2024152; locus_type=protein_coding
AT1G03770.2	chr1:000944772	0.0	W/944772-944982,945111-945168,945472-945530,945780-945861,945952-946072,946169-946210,946309-946812,946894-947019,947123-947293,947399-947431	AT1G03770.2 CDS AT1G03770 ID=AT1G03770.2; Parent=AT1G03770; Name=AT1G03770.2; Note=RING 1B; curator_summary=Encodes a nuclear localized protein with similarity to animal polycomb repressive core complex1 (PRC1) core component RING.Appears to function redundantly with ATRING1a%2C a close paralog. Both interact physically with CLF and LHP1 and appear to function together to repress class I KNOX gene expression.; conf_class=4; symbol=RING1B; Alias=ATRING1B, ARABIDOPSIS THALIANA RING 1B; full_name=RING 1B; computational_description=RING 1B (RING1B)%3B FUNCTIONS IN: zinc ion binding%3B INVOLVED IN: negative regulation of gene expression%2C epigenetic%3B LOCATED IN: nucleus%2C PRC1 complex%3B EXPRESSED IN: 15 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type%2C conserved site (InterPro:IPR017907)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: RING 1A (TAIR:AT5G44280.1)%3B Has 7001 Blast hits to 4383 proteins in 552 species: Archae - 10%3B Bacteria - 208%3B Metazoa - 3701%3B Fungi - 387%3B Plants - 512%3B Viruses - 317%3B Other Eukaryotes - 1866 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:11983057, PMID:19097900, PMID:21060339, PMID:21701597, locus:2024152; locus_type=protein_coding
AT1G03770.3	chr1:000944772	0.0	W/944772-944982,945111-945168,945472-945530,945780-945861,945952-946072,946169-946210,946309-946812,946894-947001,947123-947293,947399-947431	AT1G03770.3 CDS AT1G03770 ID=AT1G03770.3; Parent=AT1G03770; Name=AT1G03770.3; Note=RING 1B; curator_summary=Encodes a nuclear localized protein with similarity to animal polycomb repressive core complex1 (PRC1) core component RING.Appears to function redundantly with ATRING1a%2C a close paralog. Both interact physically with CLF and LHP1 and appear to function together to repress class I KNOX gene expression.; conf_class=3; symbol=RING1B; Alias=ATRING1B, ARABIDOPSIS THALIANA RING 1B; full_name=RING 1B; computational_description=RING 1B (RING1B)%3B FUNCTIONS IN: zinc ion binding%3B INVOLVED IN: negative regulation of gene expression%2C epigenetic%3B LOCATED IN: nucleus%2C PRC1 complex%3B EXPRESSED IN: 15 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type%2C conserved site (InterPro:IPR017907)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: RING 1A (TAIR:AT5G44280.1)%3B Has 7001 Blast hits to 4383 proteins in 552 species: Archae - 10%3B Bacteria - 208%3B Metazoa - 3701%3B Fungi - 387%3B Plants - 512%3B Viruses - 317%3B Other Eukaryotes - 1866 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11983057, PMID:19097900, PMID:21060339, PMID:21701597, locus:2024152; locus_type=protein_coding
AT1G03770.4	chr1:000945476	0.0	W/945476-945530,945780-945861,945952-946072,946169-946210,946309-946812,946894-947001,947123-947293,947399-947431	AT1G03770.4 CDS AT1G03770 ID=AT1G03770.4; Parent=AT1G03770; Name=AT1G03770.4; Note=RING 1B; symbol=RING1B; Alias=ATRING1B, ARABIDOPSIS THALIANA RING 1B; full_name=RING 1B; curator_summary=Encodes a nuclear localized protein with similarity to animal polycomb repressive core complex1 (PRC1) core component RING.Appears to function redundantly with ATRING1a%2C a close paralog. Both interact physically with CLF and LHP1 and appear to function together to repress class I KNOX gene expression.; computational_description=RING 1B (RING1B)%3B FUNCTIONS IN: zinc ion binding%3B INVOLVED IN: negative regulation of gene expression%2C epigenetic%3B LOCATED IN: nucleus%2C PRC1 complex%3B EXPRESSED IN: 15 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type%2C conserved site (InterPro:IPR017907)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: RING 1A (TAIR:AT5G44280.1)%3B Has 7001 Blast hits to 4383 proteins in 552 species: Archae - 10%3B Bacteria - 208%3B Metazoa - 3701%3B Fungi - 387%3B Plants - 512%3B Viruses - 317%3B Other Eukaryotes - 1866 (source: NCBI BLink).; Dbxref=PMID:11983057, PMID:19097900, PMID:21060339, PMID:21701597, locus:2024152; locus_type=protein_coding
AT1G03770.6	chr1:000945476	0.0	W/945476-945530,945780-945861,945952-946072,946169-946210,946309-946812,946894-947001,947123-947293,947399-947431	AT1G03770.6 CDS AT1G03770 ID=AT1G03770.6; Parent=AT1G03770; Name=AT1G03770.6; Note=RING 1B; symbol=RING1B; Alias=ATRING1B, ARABIDOPSIS THALIANA RING 1B; full_name=RING 1B; curator_summary=Encodes a nuclear localized protein with similarity to animal polycomb repressive core complex1 (PRC1) core component RING.Appears to function redundantly with ATRING1a%2C a close paralog. Both interact physically with CLF and LHP1 and appear to function together to repress class I KNOX gene expression.; computational_description=RING 1B (RING1B)%3B FUNCTIONS IN: zinc ion binding%3B INVOLVED IN: negative regulation of gene expression%2C epigenetic%3B LOCATED IN: nucleus%2C PRC1 complex%3B EXPRESSED IN: 15 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type%2C conserved site (InterPro:IPR017907)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: RING 1A (TAIR:AT5G44280.1)%3B Has 7001 Blast hits to 4383 proteins in 552 species: Archae - 10%3B Bacteria - 208%3B Metazoa - 3701%3B Fungi - 387%3B Plants - 512%3B Viruses - 317%3B Other Eukaryotes - 1866 (source: NCBI BLink).; Dbxref=PMID:11983057, PMID:19097900, PMID:21060339, PMID:21701597, locus:2024152; locus_type=protein_coding
AT1G03770.5	chr1:000945806	0.0	W/945806-945861,945952-946072,946169-946210,946309-946812,946894-947001,947123-947293,947399-947431	AT1G03770.5 CDS AT1G03770 ID=AT1G03770.5; Parent=AT1G03770; Name=AT1G03770.5; Note=RING 1B; symbol=RING1B; Alias=ATRING1B, ARABIDOPSIS THALIANA RING 1B; full_name=RING 1B; curator_summary=Encodes a nuclear localized protein with similarity to animal polycomb repressive core complex1 (PRC1) core component RING.Appears to function redundantly with ATRING1a%2C a close paralog. Both interact physically with CLF and LHP1 and appear to function together to repress class I KNOX gene expression.; computational_description=RING 1B (RING1B)%3B FUNCTIONS IN: zinc ion binding%3B INVOLVED IN: negative regulation of gene expression%2C epigenetic%3B LOCATED IN: nucleus%2C PRC1 complex%3B EXPRESSED IN: 15 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type%2C conserved site (InterPro:IPR017907)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: RING 1A (TAIR:AT5G44280.1)%3B Has 7001 Blast hits to 4383 proteins in 552 species: Archae - 10%3B Bacteria - 208%3B Metazoa - 3701%3B Fungi - 387%3B Plants - 512%3B Viruses - 317%3B Other Eukaryotes - 1866 (source: NCBI BLink).; Dbxref=PMID:11983057, PMID:19097900, PMID:21060339, PMID:21701597, locus:2024152; locus_type=protein_coding
AT1G03780.3	chr1:000947555	0.0	C/947555-947664,947799-948009,948088-948147,948235-948343,948429-948595,948697-948816,948912-948992,949076-949207,949297-949452,949541-949621,949734-949796,949883-950125,950198-950311,950404-950500,950582-950794,950881-951041,951126-951211,951528-951696	AT1G03780.3 CDS AT1G03780 ID=AT1G03780.3; Parent=AT1G03780; Name=AT1G03780.3; Note=targeting protein for XKLP2; curator_summary=Homolog of vertebrate TPX2. Protein has three domains involved in nuclear targeting%2C one in nuclear export and two in microtubule binding. Involved in mitotic spindle assembly during late prophase and early prometaphase.; conf_class=6; symbol=TPX2; Alias=AtTPX2; full_name=targeting protein for XKLP2; computational_description=targeting protein for XKLP2 (TPX2)%3B FUNCTIONS IN: microtubule binding%3B INVOLVED IN: spindle assembly%3B LOCATED IN: nucleus%2C chloroplast envelope%3B EXPRESSED IN: 14 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Cell cycle regulated microtubule associated protein (InterPro:IPR022021)%3B BEST Arabidopsis thaliana protein match is: Cell cycle regulated microtubule associated protein (TAIR:AT4G22860.2)%3B Has 864 Blast hits to 721 proteins in 133 species: Archae - 2%3B Bacteria - 40%3B Metazoa - 457%3B Fungi - 40%3B Plants - 113%3B Viruses - 0%3B Other Eukaryotes - 212 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:12169696, PMID:18941054, PMID:20736450, PMID:22150830, PMID:22301959, PMID:24006426, PMID:25262237, locus:2024132; locus_type=protein_coding
AT1G03780.2	chr1:000947785	0.0	C/947785-948009,948088-948147,948235-948343,948429-948595,948697-948816,948912-948992,949076-949207,949297-949452,949541-949621,949734-949796,949883-950125,950198-950311,950404-950500,950582-950794,950881-951041,951126-951211,951528-951696	AT1G03780.2 CDS AT1G03780 ID=AT1G03780.2; Parent=AT1G03780; Name=AT1G03780.2; Note=targeting protein for XKLP2; curator_summary=Homolog of vertebrate TPX2. Protein has three domains involved in nuclear targeting%2C one in nuclear export and two in microtubule binding. Involved in mitotic spindle assembly during late prophase and early prometaphase.; conf_class=2; symbol=TPX2; Alias=AtTPX2; full_name=targeting protein for XKLP2; computational_description=targeting protein for XKLP2 (TPX2)%3B FUNCTIONS IN: microtubule binding%3B INVOLVED IN: spindle assembly%3B LOCATED IN: nucleus%2C chloroplast envelope%3B EXPRESSED IN: 14 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Cell cycle regulated microtubule associated protein (InterPro:IPR022021)%3B BEST Arabidopsis thaliana protein match is: Cell cycle regulated microtubule associated protein (TAIR:AT4G22860.2)%3B Has 864 Blast hits to 721 proteins in 133 species: Archae - 2%3B Bacteria - 40%3B Metazoa - 457%3B Fungi - 40%3B Plants - 113%3B Viruses - 0%3B Other Eukaryotes - 212 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12169696, PMID:18941054, PMID:20736450, PMID:22150830, PMID:22301959, PMID:24006426, PMID:25262237, locus:2024132; locus_type=protein_coding
AT1G03780.1	chr1:000948064	0.0	C/948064-948343,948429-948640,948697-948816,949076-949207,949297-949452,949541-949621,949883-950125,950198-950311,950404-950500,950582-950794,950881-951041,951126-951211,951528-951696	AT1G03780.1 CDS AT1G03780 ID=AT1G03780.1; Parent=AT1G03780; Name=AT1G03780.1; Note=targeting protein for XKLP2; curator_summary=Homolog of vertebrate TPX2. Protein has three domains involved in nuclear targeting%2C one in nuclear export and two in microtubule binding. Involved in mitotic spindle assembly during late prophase and early prometaphase.; conf_class=6; symbol=TPX2; Alias=AtTPX2; full_name=targeting protein for XKLP2; computational_description=targeting protein for XKLP2 (TPX2)%3B FUNCTIONS IN: microtubule binding%3B INVOLVED IN: spindle assembly%3B LOCATED IN: nucleus%2C chloroplast envelope%3B EXPRESSED IN: 14 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Cell cycle regulated microtubule associated protein (InterPro:IPR022021)%3B BEST Arabidopsis thaliana protein match is: Cell cycle regulated microtubule associated protein (TAIR:AT4G22860.2)%3B Has 864 Blast hits to 721 proteins in 133 species: Archae - 2%3B Bacteria - 40%3B Metazoa - 457%3B Fungi - 40%3B Plants - 113%3B Viruses - 0%3B Other Eukaryotes - 212 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:12169696, PMID:18941054, PMID:20736450, PMID:22150830, PMID:22301959, PMID:24006426, PMID:25262237, locus:2024132; locus_type=protein_coding
AT1G03790.1	chr1:000954589	0.0	W/954589-955770	AT1G03790.1 CDS AT1G03790 ID=AT1G03790.1; Parent=AT1G03790; Name=AT1G03790.1; Note=Zinc finger C-x8-C-x5-C-x3-H type family protein; curator_summary=Encodes SOMNUS (SOM)%2C a nucleus-localized CCCH-type zinc finger protein. SOM negatively regulates light-dependent seed germination downstream of PIL5 (AT2G20180).; conf_class=1; symbol=SOM; Alias=AtTZF4, TZF4, Tandem CCCH Zinc Finger protein 4; full_name=SOMNUS; computational_description=SOMNUS (SOM)%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C CCCH-type (InterPro:IPR000571)%3B BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT5G44260.1)%3B Has 3270 Blast hits to 1059 proteins in 150 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 444%3B Fungi - 30%3B Plants - 421%3B Viruses - 3%3B Other Eukaryotes - 2372 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11118137, PMID:14982972, PMID:16504176, PMID:18221561, PMID:18487351, PMID:20173417, PMID:21467583, PMID:23148892, PMID:23421766, PMID:22483719, PMID:22948663, PMID:24377444, PMID:24326588, locus:2024112; locus_type=protein_coding
AT1G03800.1	chr1:000957261	0.0	C/957261-957998	AT1G03800.1 CDS AT1G03800 ID=AT1G03800.1; Parent=AT1G03800; Name=AT1G03800.1; Note=ERF domain protein 10; curator_summary=encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-10). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3%2C ATERF-4%2C ATERF-7%2C and leafy petiole.; conf_class=1; symbol=ERF10; Alias=ATERF10, ARABIDOPSIS THALIANA RF DOMAIN PROTEIN 10; full_name=ERF domain protein 10; computational_description=ERF domain protein 10 (ERF10)%3B FUNCTIONS IN: transcription repressor activity%2C DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: ethylene mediated signaling pathway%2C regulation of transcription%2C DNA-dependent%3B EXPRESSED IN: cultured cell%3B CONTAINS InterPro DOMAIN/s: DNA-binding%2C integrase-type (InterPro:IPR016177)%2C Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (InterPro:IPR001471)%3B BEST Arabidopsis thaliana protein match is: erf domain protein 9 (TAIR:AT5G44210.1)%3B Has 6303 Blast hits to 5828 proteins in 254 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 6292%3B Viruses - 0%3B Other Eukaryotes - 11 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:9687012, PMID:11118137, PMID:11487705, PMID:16937017, PMID:17138700, PMID:17551672, PMID:18442469, PMID:20736450, locus:2024249; locus_type=protein_coding
AT1G03810.1	chr1:000958759	0.0	W/958759-959008,959428-959609	AT1G03810.1 CDS AT1G03810 ID=AT1G03810.1; Parent=AT1G03810; Name=AT1G03810.1; Note=Nucleic acid-binding%2C OB-fold-like protein; conf_class=1; computational_description=Nucleic acid-binding%2C OB-fold-like protein%3B CONTAINS InterPro DOMAIN/s: Nucleic acid-binding%2C OB-fold-like (InterPro:IPR016027)%2C Nucleic acid-binding%2C OB-fold (InterPro:IPR012340)%3B BEST Arabidopsis thaliana protein match is: Nucleic acid-binding%2C OB-fold-like protein (TAIR:AT4G28440.1)%3B Has 209 Blast hits to 209 proteins in 44 species: Archae - 18%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 167%3B Viruses - 0%3B Other Eukaryotes - 24 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14576160, PMID:20736450, locus:2024239; locus_type=protein_coding
AT1G03820.1	chr1:000960008	0.0	C/960008-960676	AT1G03820.1 CDS AT1G03820 ID=AT1G03820.1; Parent=AT1G03820; Name=AT1G03820.1; Note=E6-like protein; conf_class=1; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B Has 1345 Blast hits to 1122 proteins in 102 species: Archae - 2%3B Bacteria - 28%3B Metazoa - 28%3B Fungi - 30%3B Plants - 109%3B Viruses - 0%3B Other Eukaryotes - 1148 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12177459, PMID:15618413, PMID:16648215, PMID:18650403, locus:2024214; locus_type=protein_coding
AT1G03830.1	chr1:000962128	0.0	C/962128-963321,963469-963546,963639-964191,964295-964380,964504-964626,964739-964873,964952-965041,965124-965309,965453-965506,965599-965736,965996-966157,966446-966622	AT1G03830.1 CDS AT1G03830 ID=AT1G03830.1; Parent=AT1G03830; Name=AT1G03830.1; Note=guanylate-binding family protein; conf_class=3; computational_description=guanylate-binding family protein%3B FUNCTIONS IN: GTP binding%2C GTPase activity%3B INVOLVED IN: immune response%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Guanylate-binding protein%2C N-terminal (InterPro:IPR015894)%2C Guanylate-binding protein%2C C-terminal (InterPro:IPR003191)%3B BEST Arabidopsis thaliana protein match is: Guanylate-binding family protein (TAIR:AT5G46070.1)%3B Has 104208 Blast hits to 58378 proteins in 3029 species: Archae - 1549%3B Bacteria - 18958%3B Metazoa - 46662%3B Fungi - 8741%3B Plants - 6295%3B Viruses - 432%3B Other Eukaryotes - 21571 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:21284606, locus:2024203; locus_type=protein_coding
AT1G03830.2	chr1:000962128	0.0	C/962128-963321,963469-963546,963639-964191,964295-964380,964504-964626,964739-964873,964952-965041,965124-965309,965453-965506,965599-965736,965823-965888,965996-966157,966446-966622	AT1G03830.2 CDS AT1G03830 ID=AT1G03830.2; Parent=AT1G03830; Name=AT1G03830.2; Note=guanylate-binding family protein; conf_class=3; computational_description=guanylate-binding family protein%3B FUNCTIONS IN: GTP binding%2C GTPase activity%3B INVOLVED IN: immune response%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Guanylate-binding protein%2C N-terminal (InterPro:IPR015894)%2C Guanylate-binding protein%2C C-terminal (InterPro:IPR003191)%3B BEST Arabidopsis thaliana protein match is: Guanylate-binding family protein (TAIR:AT5G46070.1)%3B Has 104208 Blast hits to 58378 proteins in 3029 species: Archae - 1549%3B Bacteria - 18958%3B Metazoa - 46662%3B Fungi - 8741%3B Plants - 6295%3B Viruses - 432%3B Other Eukaryotes - 21571 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:21284606, locus:2024203; locus_type=protein_coding
AT1G03840.1	chr1:000967596	0.0	C/967596-968568,969315-969711,969908-970058	AT1G03840.1 CDS AT1G03840 ID=AT1G03840.1; Parent=AT1G03840; Name=AT1G03840.1; Note=C2H2 and C2HC zinc fingers superfamily protein; curator_summary=MGP is a nuclear-localized putative transcription factor with three zinc finger domains. MGP can interact with three proteins implicated in root patterning: SCR%2C SHR%2C and JKD in Y2H assays%2C and these interactions depend on the first zinc finger in MGP. MGP appears to be a direct transcriptional target of SHR and SCR%2C based on promoter binding assays%2C though it is not expressed in the QC%2C based on in situ hybridizations.; conf_class=1; symbol=MGP; Alias=IDD3, INDETERMINATE DOMAIN 3; full_name=Magpie; computational_description=Magpie (MGP)%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C C2H2-type (InterPro:IPR007087)%3B BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT5G44160.1)%3B Has 50307 Blast hits to 19551 proteins in 373 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 47709%3B Fungi - 273%3B Plants - 826%3B Viruses - 4%3B Other Eukaryotes - 1493 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11118137, PMID:15208423, PMID:15236668, PMID:16640459, PMID:16813575, PMID:16784536, PMID:21935722, PMID:22037706, PMID:24821766, PMID:25208507, locus:2024193; locus_type=protein_coding
AT1G03840.2	chr1:000967596	0.0	C/967596-968568,969315-969705,969908-970058	AT1G03840.2 CDS AT1G03840 ID=AT1G03840.2; Parent=AT1G03840; Name=AT1G03840.2; Note=C2H2 and C2HC zinc fingers superfamily protein; curator_summary=MGP is a nuclear-localized putative transcription factor with three zinc finger domains. MGP can interact with three proteins implicated in root patterning: SCR%2C SHR%2C and JKD in Y2H assays%2C and these interactions depend on the first zinc finger in MGP. MGP appears to be a direct transcriptional target of SHR and SCR%2C based on promoter binding assays%2C though it is not expressed in the QC%2C based on in situ hybridizations.; conf_class=2; symbol=MGP; Alias=IDD3, INDETERMINATE DOMAIN 3; full_name=Magpie; computational_description=Magpie (MGP)%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C C2H2-type (InterPro:IPR007087)%3B BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT5G44160.1)%3B Has 50307 Blast hits to 19551 proteins in 373 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 47709%3B Fungi - 273%3B Plants - 826%3B Viruses - 4%3B Other Eukaryotes - 1493 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:15208423, PMID:15236668, PMID:16640459, PMID:16813575, PMID:16784536, PMID:21935722, PMID:22037706, PMID:24821766, PMID:25208507, locus:2024193; locus_type=protein_coding
AT1TE03170	chr1:000971939	0.0	C/971939-972418	AT1TE03170 transposable_element AT1TE03170 ID=AT1TE03170; Name=AT1TE03170; Alias=ATREP10B
AT1TE03175	chr1:000974403	0.0	C/974403-974811	AT1TE03175 transposable_element AT1TE03175 ID=AT1TE03175; Name=AT1TE03175; Alias=BRODYAGA1A
AT1TE03180	chr1:000974812	0.0	W/974812-974873	AT1TE03180 transposable_element AT1TE03180 ID=AT1TE03180; Name=AT1TE03180; Alias=BRODYAGA1A
AT1G03850.3	chr1:000976349	0.0	C/976349-976501,977368-977685	AT1G03850.3 CDS AT1G03850 ID=AT1G03850.3; Parent=AT1G03850; Name=AT1G03850.3; Note=Glutaredoxin family protein; symbol=GRXS13; Alias=ATGRXS13, glutaredoxin 13; full_name=glutaredoxin 13; curator_summary=Encodes glutaredoxin ATGRXS13%2C required to facilitate Botrytis cinerea infection of Arabidopsis thaliana plants. Sylvain La Camera et al (2011%2C PMID:21756272) reported a third splice variant in addition to the two annotated in TAIR10.; computational_description=Glutaredoxin family protein%3B FUNCTIONS IN: electron carrier activity%2C protein disulfide oxidoreductase activity%3B INVOLVED IN: response to cytokinin stimulus%3B EXPRESSED IN: 14 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: Glutaredoxin-like%2C plant II (InterPro:IPR011905)%2C Thioredoxin fold (InterPro:IPR012335)%2C Glutaredoxin (InterPro:IPR002109)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT1G28480.1)%3B Has 446 Blast hits to 446 proteins in 30 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 0%3B Fungi - 5%3B Plants - 435%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=PMID:14576160, PMID:15632145, PMID:15546358, PMID:16212609, PMID:16258011, PMID:16720602, PMID:16648214, PMID:16766691, PMID:16901781, PMID:17061125, PMID:17031546, PMID:17189325, PMID:17181774, PMID:17217462, PMID:17496105, PMID:18178671, PMID:18305208, PMID:18650403, PMID:21632542, PMID:21756272, PMID:21963612, PMID:24451981, locus:2024162; locus_type=protein_coding
AT1G03850.1	chr1:000976428	0.0	C/976428-976501,977280-977685	AT1G03850.1 CDS AT1G03850 ID=AT1G03850.1; Parent=AT1G03850; Name=AT1G03850.1; Note=Glutaredoxin family protein; curator_summary=Encodes glutaredoxin ATGRXS13%2C required to facilitate Botrytis cinerea infection of Arabidopsis thaliana plants. Sylvain La Camera et al (2011%2C PMID:21756272) reported a third splice variant in addition to the two annotated in TAIR10.; conf_class=1; symbol=GRXS13; Alias=ATGRXS13, glutaredoxin 13; full_name=glutaredoxin 13; computational_description=Glutaredoxin family protein%3B FUNCTIONS IN: electron carrier activity%2C protein disulfide oxidoreductase activity%3B INVOLVED IN: response to cytokinin stimulus%3B EXPRESSED IN: 14 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: Glutaredoxin-like%2C plant II (InterPro:IPR011905)%2C Thioredoxin fold (InterPro:IPR012335)%2C Glutaredoxin (InterPro:IPR002109)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT1G28480.1)%3B Has 446 Blast hits to 446 proteins in 30 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 0%3B Fungi - 5%3B Plants - 435%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14576160, PMID:15632145, PMID:15546358, PMID:16212609, PMID:16258011, PMID:16720602, PMID:16648214, PMID:16766691, PMID:16901781, PMID:17061125, PMID:17031546, PMID:17189325, PMID:17181774, PMID:17217462, PMID:17496105, PMID:18178671, PMID:18305208, PMID:18650403, PMID:21632542, PMID:21756272, PMID:21963612, PMID:24451981, locus:2024162; locus_type=protein_coding
AT1TE03185	chr1:000976608	0.0	W/976608-976643	AT1TE03185 transposable_element AT1TE03185 ID=AT1TE03185; Name=AT1TE03185; Alias=ATREP5
AT1TE03190	chr1:000976644	0.0	W/976644-977202	AT1TE03190 transposable_element AT1TE03190 ID=AT1TE03190; Name=AT1TE03190; Alias=BRODYAGA2
AT1TE03195	chr1:000977203	0.0	W/977203-977233	AT1TE03195 transposable_element AT1TE03195 ID=AT1TE03195; Name=AT1TE03195; Alias=ATREP5
AT1G03850.2	chr1:000977233	0.0	C/977233-977685	AT1G03850.2 CDS AT1G03850 ID=AT1G03850.2; Parent=AT1G03850; Name=AT1G03850.2; Note=Glutaredoxin family protein; curator_summary=Encodes glutaredoxin ATGRXS13%2C required to facilitate Botrytis cinerea infection of Arabidopsis thaliana plants. Sylvain La Camera et al (2011%2C PMID:21756272) reported a third splice variant in addition to the two annotated in TAIR10.; conf_class=1; symbol=GRXS13; Alias=ATGRXS13, glutaredoxin 13; full_name=glutaredoxin 13; computational_description=Glutaredoxin family protein%3B FUNCTIONS IN: electron carrier activity%2C protein disulfide oxidoreductase activity%3B INVOLVED IN: response to cytokinin stimulus%3B EXPRESSED IN: 14 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: Glutaredoxin-like%2C plant II (InterPro:IPR011905)%2C Thioredoxin fold (InterPro:IPR012335)%2C Glutaredoxin (InterPro:IPR002109)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT1G28480.1)%3B Has 446 Blast hits to 446 proteins in 30 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 0%3B Fungi - 5%3B Plants - 435%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14576160, PMID:15632145, PMID:15546358, PMID:16212609, PMID:16258011, PMID:16720602, PMID:16648214, PMID:16766691, PMID:16901781, PMID:17061125, PMID:17031546, PMID:17189325, PMID:17181774, PMID:17217462, PMID:17496105, PMID:18178671, PMID:18305208, PMID:18650403, PMID:21632542, PMID:21756272, PMID:21963612, PMID:24451981, locus:2024162; locus_type=protein_coding
AT1G03860.1	chr1:000979611	0.0	C/979611-979799,979891-980103,980185-980355,980778-980894,980987-981157	AT1G03860.1 CDS AT1G03860 ID=AT1G03860.1; Parent=AT1G03860; Name=AT1G03860.1; Note=prohibitin 2; curator_summary=prohibitin 2; conf_class=2; symbol=PHB2; Alias=ATPHB2, prohibitin 2; full_name=prohibitin 2; computational_description=prohibitin 2 (PHB2)%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: in 8 components%3B EXPRESSED IN: 30 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Prohibitin (InterPro:IPR000163)%2C Band 7 protein (InterPro:IPR001107)%3B BEST Arabidopsis thaliana protein match is: prohibitin 7 (TAIR:AT5G44140.1)%3B Has 3974 Blast hits to 3972 proteins in 1182 species: Archae - 185%3B Bacteria - 2042%3B Metazoa - 484%3B Fungi - 300%3B Plants - 234%3B Viruses - 15%3B Other Eukaryotes - 714 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11743115, PMID:12586869, PMID:12837548, PMID:14671022, PMID:15215502, PMID:15276431, PMID:15539469, PMID:16618929, PMID:18189341, PMID:20197505, PMID:23782494, locus:2024142; locus_type=protein_coding
AT1G03860.2	chr1:000979611	0.0	C/979611-979799,979891-980103,980185-980355,980778-980870	AT1G03860.2 CDS AT1G03860 ID=AT1G03860.2; Parent=AT1G03860; Name=AT1G03860.2; Note=prohibitin 2; curator_summary=prohibitin 2; conf_class=2; symbol=PHB2; Alias=ATPHB2, prohibitin 2; full_name=prohibitin 2; computational_description=prohibitin 2 (PHB2)%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: in 8 components%3B EXPRESSED IN: 30 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Prohibitin (InterPro:IPR000163)%2C Band 7 protein (InterPro:IPR001107)%3B BEST Arabidopsis thaliana protein match is: prohibitin 7 (TAIR:AT5G44140.1)%3B Has 3974 Blast hits to 3972 proteins in 1182 species: Archae - 185%3B Bacteria - 2042%3B Metazoa - 484%3B Fungi - 300%3B Plants - 234%3B Viruses - 15%3B Other Eukaryotes - 714 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11743115, PMID:12586869, PMID:12837548, PMID:14671022, PMID:15215502, PMID:15276431, PMID:15539469, PMID:16618929, PMID:18189341, PMID:20197505, PMID:23782494, locus:2024142; locus_type=protein_coding
AT1G03860.3	chr1:000979611	0.0	C/979611-979799,979891-980103,980185-980355,980778-980894,980987-981157	AT1G03860.3 CDS AT1G03860 ID=AT1G03860.3; Parent=AT1G03860; Name=AT1G03860.3; Note=prohibitin 2; curator_summary=prohibitin 2; conf_class=2; symbol=PHB2; Alias=ATPHB2, prohibitin 2; full_name=prohibitin 2; computational_description=prohibitin 2 (PHB2)%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: in 8 components%3B EXPRESSED IN: 30 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Prohibitin (InterPro:IPR000163)%2C Band 7 protein (InterPro:IPR001107)%3B BEST Arabidopsis thaliana protein match is: prohibitin 7 (TAIR:AT5G44140.1)%3B Has 3974 Blast hits to 3972 proteins in 1182 species: Archae - 185%3B Bacteria - 2042%3B Metazoa - 484%3B Fungi - 300%3B Plants - 234%3B Viruses - 15%3B Other Eukaryotes - 714 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11743115, PMID:12586869, PMID:12837548, PMID:14671022, PMID:15215502, PMID:15276431, PMID:15539469, PMID:16618929, PMID:18189341, PMID:20197505, PMID:23782494, locus:2024142; locus_type=protein_coding
AT1G03870.1	chr1:000982625	0.0	C/982625-983368	AT1G03870.1 CDS AT1G03870 ID=AT1G03870.1; Parent=AT1G03870; Name=AT1G03870.1; Note=FASCICLIN-like arabinoogalactan 9; curator_summary=fasciclin-like arabinogalactan-protein 9 (Fla9); conf_class=1; symbol=FLA9; full_name=FASCICLIN-like arabinoogalactan 9; computational_description=FASCICLIN-like arabinoogalactan 9 (FLA9)%3B LOCATED IN: anchored to plasma membrane%2C plasma membrane%2C anchored to membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782)%3B BEST Arabidopsis thaliana protein match is: FASCICLIN-like arabinogalactan protein 13 precursor (TAIR:AT5G44130.1)%3B Has 1005 Blast hits to 985 proteins in 182 species: Archae - 18%3B Bacteria - 304%3B Metazoa - 15%3B Fungi - 9%3B Plants - 624%3B Viruses - 0%3B Other Eukaryotes - 35 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11554470, PMID:12068095, PMID:12177459, PMID:12481097, PMID:12805588, PMID:14645732, PMID:15047898, PMID:15235117, PMID:15347784, PMID:16244449, PMID:16367961, PMID:16553894, PMID:16635983, PMID:17435085, PMID:18552355, PMID:20202165, PMID:20736450, locus:2024122; locus_type=protein_coding
AT1G03880.1	chr1:000985786	0.0	W/985786-986068,986279-986541,986854-987282,987524-987916	AT1G03880.1 CDS AT1G03880 ID=AT1G03880.1; Parent=AT1G03880; Name=AT1G03880.1; Note=cruciferin 2; curator_summary=Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.; conf_class=2; symbol=CRU2; Alias=CRB, CRUCIFERIN B; full_name=cruciferin 2; computational_description=cruciferin 2 (CRU2)%3B FUNCTIONS IN: nutrient reservoir activity%3B INVOLVED IN: seed germination%2C response to abscisic acid stimulus%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: leaf%2C seed%3B EXPRESSED DURING: seedling growth%2C seed development stages%3B CONTAINS InterPro DOMAIN/s: 11-S seed storage protein%2C conserved site (InterPro:IPR022379)%2C Cupin%2C RmlC-type (InterPro:IPR011051)%2C Cupin 1 (InterPro:IPR006045)%2C RmlC-like jelly roll fold (InterPro:IPR014710)%2C 11-S seed storage protein%2C plant (InterPro:IPR006044)%3B BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT5G44120.3)%3B Has 919 Blast hits to 884 proteins in 120 species: Archae - 0%3B Bacteria - 10%3B Metazoa - 2%3B Fungi - 0%3B Plants - 906%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:2013284, PMID:12417707, PMID:12657652, PMID:14682612, PMID:15085429, PMID:15047898, PMID:15047896, PMID:15319476, PMID:15908592, PMID:15912356, PMID:16412086, PMID:16679420, PMID:16928278, PMID:17059406, PMID:17028149, PMID:17194767, PMID:17562289, PMID:17828791, PMID:18441212, PMID:18768909, PMID:17313365, PMID:20118269, PMID:25702284, locus:2024234; locus_type=protein_coding
AT1G03890.1	chr1:000989250	0.0	W/989250-989550,989653-989918,990049-990459,990531-990908	AT1G03890.1 CDS AT1G03890 ID=AT1G03890.1; Parent=AT1G03890; Name=AT1G03890.1; Note=RmlC-like cupins superfamily protein; conf_class=2; computational_description=RmlC-like cupins superfamily protein%3B FUNCTIONS IN: nutrient reservoir activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: leaf%2C seed%3B EXPRESSED DURING: seed development stages%3B CONTAINS InterPro DOMAIN/s: Cupin%2C RmlC-type (InterPro:IPR011051)%2C Cupin 1 (InterPro:IPR006045)%2C RmlC-like jelly roll fold (InterPro:IPR014710)%2C 11-S seed storage protein%2C plant (InterPro:IPR006044)%3B BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT5G44120.3)%3B Has 1003 Blast hits to 963 proteins in 175 species: Archae - 0%3B Bacteria - 136%3B Metazoa - 2%3B Fungi - 2%3B Plants - 862%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12417707, PMID:14688293, PMID:14682612, PMID:15908592, PMID:16412086, PMID:16504176, PMID:16679420, PMID:17059406, PMID:17562289, PMID:17828791, PMID:20118269, locus:2024219; locus_type=protein_coding
AT1G03900.1	chr1:000991252	0.0	W/991252-991746,992443-992691,992778-992852	AT1G03900.1 CDS AT1G03900 ID=AT1G03900.1; Parent=AT1G03900; Name=AT1G03900.1; Note=non-intrinsic ABC protein 4; curator_summary=member of NAP family%2C an heterogeneous subfamily of the ATP-binding Cassette (ABC) superfamily of membrane transporters. The NAPs proteins are characterized by having only one nucleotide-binding folds (NBFs) domain.; conf_class=2; symbol=ABCI18; Alias=ATNAP4, non-intrinsic ABC protein 4, NAP4, non-intrinsic ABC protein 4; full_name=ATP-binding cassette I18; computational_description=non-intrinsic ABC protein 4 (NAP4)%3B FUNCTIONS IN: ATPase activity%2C coupled to transmembrane movement of substances%2C transporter activity%3B INVOLVED IN: extracellular transport%3B LOCATED IN: membrane%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Adaptin ear-binding coat-associated protein 1 NECAP-1 (InterPro:IPR012466)%3B BEST Arabidopsis thaliana protein match is: Adaptin ear-binding coat-associated protein 1 NECAP-1 (TAIR:AT3G58600.1)%3B Has 448 Blast hits to 448 proteins in 135 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 218%3B Fungi - 61%3B Plants - 115%3B Viruses - 0%3B Other Eukaryotes - 54 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11346655, PMID:17164256, PMID:18299247, PMID:18775970, PMID:20736450, locus:2024208; locus_type=protein_coding
AT1G03905.1	chr1:000993478	0.0	W/993478-993631,994046-994206,994354-994405,994496-994632,994828-994914,995313-995594	AT1G03905.1 CDS AT1G03905 ID=AT1G03905.1; Parent=AT1G03905; Name=AT1G03905.1; Note=P-loop containing nucleoside triphosphate hydrolases superfamily protein; conf_class=4; symbol=ABCI19; full_name=ATP-binding cassette I19; computational_description=P-loop containing nucleoside triphosphate hydrolases superfamily protein%3B FUNCTIONS IN: nucleoside-triphosphatase activity%2C ATPase activity%2C nucleotide binding%2C ATP binding%3B EXPRESSED IN: 8 plant structures%3B EXPRESSED DURING: petal differentiation and expansion stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C ABC transporter-like (InterPro:IPR003439)%3B BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G44110.1)%3B Has 185812 Blast hits to 177765 proteins in 3375 species: Archae - 3786%3B Bacteria - 158244%3B Metazoa - 1934%3B Fungi - 1485%3B Plants - 1792%3B Viruses - 4%3B Other Eukaryotes - 18567 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:15381434, PMID:16460505, PMID:18299247, PMID:20736450, locus:505006098; locus_type=protein_coding
AT1G03905.2	chr1:000994084	0.0	W/994084-994206,994354-994405,994496-994632,994828-994914,995313-995594	AT1G03905.2 CDS AT1G03905 ID=AT1G03905.2; Parent=AT1G03905; Name=AT1G03905.2; Note=P-loop containing nucleoside triphosphate hydrolases superfamily protein; symbol=ABCI19; full_name=ATP-binding cassette I19; computational_description=P-loop containing nucleoside triphosphate hydrolases superfamily protein%3B FUNCTIONS IN: nucleoside-triphosphatase activity%2C ATPase activity%2C nucleotide binding%2C ATP binding%3B EXPRESSED IN: 8 plant structures%3B EXPRESSED DURING: petal differentiation and expansion stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C ABC transporter-like (InterPro:IPR003439)%3B BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G44110.1)%3B Has 185812 Blast hits to 177765 proteins in 3375 species: Archae - 3786%3B Bacteria - 158244%3B Metazoa - 1934%3B Fungi - 1485%3B Plants - 1792%3B Viruses - 4%3B Other Eukaryotes - 18567 (source: NCBI BLink).; Dbxref=PMID:15381434, PMID:16460505, PMID:18299247, PMID:20736450, locus:505006098; locus_type=protein_coding
AT1G03905.3	chr1:000994084	0.0	W/994084-994206,994354-994405,994496-994632,994828-994914,995313-995594	AT1G03905.3 CDS AT1G03905 ID=AT1G03905.3; Parent=AT1G03905; Name=AT1G03905.3; Note=P-loop containing nucleoside triphosphate hydrolases superfamily protein; symbol=ABCI19; full_name=ATP-binding cassette I19; computational_description=P-loop containing nucleoside triphosphate hydrolases superfamily protein%3B FUNCTIONS IN: nucleoside-triphosphatase activity%2C ATPase activity%2C nucleotide binding%2C ATP binding%3B EXPRESSED IN: 8 plant structures%3B EXPRESSED DURING: petal differentiation and expansion stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C ABC transporter-like (InterPro:IPR003439)%3B BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G44110.1)%3B Has 185812 Blast hits to 177765 proteins in 3375 species: Archae - 3786%3B Bacteria - 158244%3B Metazoa - 1934%3B Fungi - 1485%3B Plants - 1792%3B Viruses - 4%3B Other Eukaryotes - 18567 (source: NCBI BLink).; Dbxref=PMID:15381434, PMID:16460505, PMID:18299247, PMID:20736450, locus:505006098; locus_type=protein_coding
AT1G03905.4	chr1:000994084	0.0	W/994084-994206,994354-994405,994496-994632,994828-994914,995313-995594	AT1G03905.4 CDS AT1G03905 ID=AT1G03905.4; Parent=AT1G03905; Name=AT1G03905.4; Note=P-loop containing nucleoside triphosphate hydrolases superfamily protein; symbol=ABCI19; full_name=ATP-binding cassette I19; computational_description=P-loop containing nucleoside triphosphate hydrolases superfamily protein%3B FUNCTIONS IN: nucleoside-triphosphatase activity%2C ATPase activity%2C nucleotide binding%2C ATP binding%3B EXPRESSED IN: 8 plant structures%3B EXPRESSED DURING: petal differentiation and expansion stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C ABC transporter-like (InterPro:IPR003439)%3B BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G44110.1)%3B Has 185812 Blast hits to 177765 proteins in 3375 species: Archae - 3786%3B Bacteria - 158244%3B Metazoa - 1934%3B Fungi - 1485%3B Plants - 1792%3B Viruses - 4%3B Other Eukaryotes - 18567 (source: NCBI BLink).; Dbxref=PMID:15381434, PMID:16460505, PMID:18299247, PMID:20736450, locus:505006098; locus_type=protein_coding
AT1G03910.1	chr1:000996432	0.0	W/996432-996734,996848-996939,997177-997276,997418-997489,997604-997666,997755-997895,998420-998515,998733-999017,999109-999411,999504-999680,999760-1000026,1000112-1000231	AT1G03910.1 CDS AT1G03910 ID=AT1G03910.1; Parent=AT1G03910; Name=AT1G03910.1; Note=cactus-binding carboxy-terminal%2C cactin; curator_summary=Encodes the Arabidopsis homolog of a conserved eukaryotic protein without known functional domains. The protein that localizes to nuclear speckles and colocalizes with known splicing proteins.; conf_class=4; Alias=CTN, CACTIN; computational_description=EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Cactin protein%2C cactus-binding domain%2C C-terminal (InterPro:IPR019134)%2C Cactin%2C central region (InterPro:IPR018816)%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36815.2)%3B Has 11711 Blast hits to 7382 proteins in 452 species: Archae - 31%3B Bacteria - 352%3B Metazoa - 6006%3B Fungi - 1138%3B Plants - 599%3B Viruses - 33%3B Other Eukaryotes - 3552 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:18315867, PMID:23454656, PMID:24023856, locus:2024182; locus_type=protein_coding
AT1G03910.2	chr1:000996432	0.0	W/996432-996734,996848-996939,997177-997276,997418-997489,997604-997666,997755-997895,998169-998300,998420-998515,998733-999017,999109-999411,999504-999680,999760-1000026,1000112-1000231	AT1G03910.2 CDS AT1G03910 ID=AT1G03910.2; Parent=AT1G03910; Name=AT1G03910.2; Note=cactus-binding carboxy-terminal%2C cactin; curator_summary=Encodes the Arabidopsis homolog of a conserved eukaryotic protein without known functional domains. The protein that localizes to nuclear speckles and colocalizes with known splicing proteins.; conf_class=6; Alias=CTN, CACTIN; computational_description=EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Cactin protein%2C cactus-binding domain%2C C-terminal (InterPro:IPR019134)%2C Cactin%2C central region (InterPro:IPR018816)%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36815.2)%3B Has 11711 Blast hits to 7382 proteins in 452 species: Archae - 31%3B Bacteria - 352%3B Metazoa - 6006%3B Fungi - 1138%3B Plants - 599%3B Viruses - 33%3B Other Eukaryotes - 3552 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:18315867, PMID:23454656, PMID:24023856, locus:2024182; locus_type=protein_coding
AT1G03920.1	chr1:001001473	0.0	W/1001473-1001747,1001809-1002067,1002143-1002384,1002471-1002687,1002783-1002862,1002948-1003032,1003137-1003268,1003389-1003502,1003607-1003654,1003810-1003894,1003971-1004027,1004125-1004240	AT1G03920.1 CDS AT1G03920 ID=AT1G03920.1; Parent=AT1G03920; Name=AT1G03920.1; Note=Protein kinase family protein; conf_class=1; computational_description=Protein kinase family protein%3B FUNCTIONS IN: kinase activity%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: cytosol%2C plasma membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase%2C C-terminal (InterPro:IPR017892)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C AGC-kinase%2C C-terminal (InterPro:IPR000961)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%3B BEST Arabidopsis thaliana protein match is: AGC (cAMP-dependent%2C cGMP-dependent and protein kinase C) kinase family protein (TAIR:AT2G20470.1)%3B Has 109567 Blast hits to 108299 proteins in 4009 species: Archae - 130%3B Bacteria - 13646%3B Metazoa - 38992%3B Fungi - 11695%3B Plants - 26009%3B Viruses - 442%3B Other Eukaryotes - 18653 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12913170, PMID:13678909, PMID:16291648, PMID:18433157, PMID:18775970, PMID:20736450, locus:2024167; locus_type=protein_coding
AT1G03920.3	chr1:001001473	0.0	W/1001473-1001747,1001809-1002067,1002143-1002384,1002471-1002687,1002783-1002862,1002948-1003032,1003137-1003268,1003389-1003502,1003607-1003654,1003810-1003894,1003971-1004027,1004125-1004240	AT1G03920.3 CDS AT1G03920 ID=AT1G03920.3; Parent=AT1G03920; Name=AT1G03920.3; Note=Protein kinase family protein; Dbxref=PMID:12913170, PMID:13678909, PMID:16291648, PMID:18433157, PMID:18775970, PMID:20736450, locus:2024167; computational_description=Protein kinase family protein%3B FUNCTIONS IN: kinase activity%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: cytosol%2C plasma membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase%2C C-terminal (InterPro:IPR017892)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C AGC-kinase%2C C-terminal (InterPro:IPR000961)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%3B BEST Arabidopsis thaliana protein match is: AGC (cAMP-dependent%2C cGMP-dependent and protein kinase C) kinase family protein (TAIR:AT2G20470.1)%3B Has 109567 Blast hits to 108299 proteins in 4009 species: Archae - 130%3B Bacteria - 13646%3B Metazoa - 38992%3B Fungi - 11695%3B Plants - 26009%3B Viruses - 442%3B Other Eukaryotes - 18653 (source: NCBI BLink).; locus_type=protein_coding
AT1G03920.2	chr1:001001873	0.0	W/1001873-1002067,1002143-1002384,1002471-1002687,1002783-1002862,1002948-1003032,1003137-1003268,1003389-1003502,1003607-1003654,1003810-1003894,1003971-1004027,1004125-1004240	AT1G03920.2 CDS AT1G03920 ID=AT1G03920.2; Parent=AT1G03920; Name=AT1G03920.2; Note=Protein kinase family protein; computational_description=Protein kinase family protein%3B FUNCTIONS IN: kinase activity%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: cytosol%2C plasma membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase%2C C-terminal (InterPro:IPR017892)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C AGC-kinase%2C C-terminal (InterPro:IPR000961)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%3B BEST Arabidopsis thaliana protein match is: AGC (cAMP-dependent%2C cGMP-dependent and protein kinase C) kinase family protein (TAIR:AT2G20470.1)%3B Has 109567 Blast hits to 108299 proteins in 4009 species: Archae - 130%3B Bacteria - 13646%3B Metazoa - 38992%3B Fungi - 11695%3B Plants - 26009%3B Viruses - 442%3B Other Eukaryotes - 18653 (source: NCBI BLink).; Dbxref=PMID:12913170, PMID:13678909, PMID:16291648, PMID:18433157, PMID:18775970, PMID:20736450, locus:2024167; locus_type=protein_coding
AT1G03930.1	chr1:001005439	0.0	W/1005439-1005514,1005612-1005652,1005746-1005815,1005926-1006074,1006176-1006271,1006428-1006498,1006581-1006642,1006734-1006797,1006917-1007001,1007081-1007207,1007290-1007375,1007459-1007525,1007602-1007732,1007828-1008118	AT1G03930.1 CDS AT1G03930 ID=AT1G03930.1; Parent=AT1G03930; Name=AT1G03930.1; Note=dual specificity kinase 1; curator_summary=Phosphorylates serine%2C threonine%2C and tyrosine; conf_class=1; symbol=ADK1; Alias=CKL9ALPHA, CASEIN KINASE I-LIKE 9 ALPHA, CKL9BETA, CASEIN KINASE I-LIKE 9 BETA; full_name=dual specificity kinase 1; computational_description=dual specificity kinase 1 (ADK1)%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: casein kinase I-like 7 (TAIR:AT5G44100.1)%3B Has 64744 Blast hits to 58833 proteins in 2294 species: Archae - 36%3B Bacteria - 9751%3B Metazoa - 22487%3B Fungi - 6187%3B Plants - 10395%3B Viruses - 402%3B Other Eukaryotes - 15486 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:7527390, PMID:12913170, PMID:16126836, PMID:18775970, PMID:21477822, locus:2024147; locus_type=protein_coding
AT1G04217.1	chr1:001008592	0.0	W/1008592-1008735	AT1G04217.1 snoRNA AT1G04217 ID=AT1G04217.1; Parent=AT1G04217; Name=AT1G04217.1; Alias=snoR134; Dbxref=PMID:19357091, PMID:22820990; locus_type=small_nucleolar_rna
AT1G03935.1	chr1:001008810	0.0	W/1008810-1008896	AT1G03935.1 snoRNA AT1G03935 ID=AT1G03935.1; Parent=AT1G03935; computational_description=snoRNA; Dbxref=PMID:22820990, locus:3688886; Name=AT1G03935.1; Note=snoRNA; locus_type=small_nucleolar_rna
AT1G04223.1	chr1:001009073	0.0	W/1009073-1009189	AT1G04223.1 snoRNA AT1G04223 ID=AT1G04223.1; Parent=AT1G04223; Name=AT1G04223.1; Alias=AtsnoR6-2; Dbxref=PMID:12520043, PMID:22820990; locus_type=small_nucleolar_rna
AT1G04227.1	chr1:001009249	0.0	W/1009249-1009356	AT1G04227.1 snoRNA AT1G04227 ID=AT1G04227.1; Parent=AT1G04227; Name=AT1G04227.1; Alias=AtsnoR97; Dbxref=PMID:12520043, PMID:22820990; locus_type=small_nucleolar_rna
AT1G03940.1	chr1:001009542	0.0	C/1009542-1010951	AT1G03940.1 CDS AT1G03940 ID=AT1G03940.1; Parent=AT1G03940; Name=AT1G03940.1; Note=HXXXD-type acyl-transferase family protein; conf_class=1; computational_description=HXXXD-type acyl-transferase family protein%3B FUNCTIONS IN: transferase activity%2C transferring acyl groups other than amino-acyl groups%2C transferase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480)%3B BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT1G03495.1)%3B Has 1873 Blast hits to 1858 proteins in 109 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 18%3B Plants - 1853%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15047901, PMID:15807784, PMID:17425720, PMID:18757557, locus:2024127; locus_type=protein_coding
AT1G03950.1	chr1:001011388	0.0	C/1011388-1011433,1011502-1011557,1011654-1011689,1011778-1011858,1011942-1012013,1012165-1012236,1012335-1012439,1012509-1012559,1012646-1012680,1012868-1012912,1013179-1013212	AT1G03950.1 CDS AT1G03950 ID=AT1G03950.1; Parent=AT1G03950; Name=AT1G03950.1; Note=vacuolar protein sorting-associated protein 2.3; conf_class=2; symbol=VPS2.3; full_name=vacuolar protein sorting-associated protein 2.3; computational_description=vacuolar protein sorting-associated protein 2.3 (VPS2.3)%3B CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024)%3B BEST Arabidopsis thaliana protein match is: SNF7 family protein (TAIR:AT5G44560.1)%3B Has 1693 Blast hits to 1691 proteins in 237 species: Archae - 2%3B Bacteria - 12%3B Metazoa - 754%3B Fungi - 334%3B Plants - 366%3B Viruses - 0%3B Other Eukaryotes - 225 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16488176, PMID:17090720, PMID:18650403, PMID:20736450, locus:2024107; locus_type=protein_coding
AT1G03960.1	chr1:001014085	0.0	W/1014085-1014237,1014334-1014543,1014767-1014872,1014951-1015050,1015199-1015304,1015428-1015518,1015684-1015825,1016079-1016226,1016340-1016449,1016795-1016951,1017058-1017183,1017332-1017472	AT1G03960.1 CDS AT1G03960 ID=AT1G03960.1; Parent=AT1G03960; Name=AT1G03960.1; Note=Calcium-binding EF hand family protein; conf_class=2; computational_description=Calcium-binding EF hand family protein%3B FUNCTIONS IN: calcium ion binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: EF-Hand 1%2C calcium-binding site (InterPro:IPR018247)%2C EF-HAND 2 (InterPro:IPR018249)%2C EF-hand-like domain (InterPro:IPR011992)%3B BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT5G44090.1)%3B Has 707 Blast hits to 703 proteins in 126 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 370%3B Fungi - 0%3B Plants - 160%3B Viruses - 0%3B Other Eukaryotes - 177 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12372144, PMID:21478440, locus:2024254; locus_type=protein_coding
AT1G03960.5	chr1:001014085	0.0	W/1014085-1014237,1014334-1014543,1014767-1014872,1014951-1015050,1015199-1015304,1015428-1015518,1015684-1015825,1016079-1016226,1016340-1016449,1016795-1016951,1017058-1017237	AT1G03960.5 CDS AT1G03960 ID=AT1G03960.5; Parent=AT1G03960; Name=AT1G03960.5; Note=Calcium-binding EF hand family protein; computational_description=Calcium-binding EF hand family protein%3B FUNCTIONS IN: calcium ion binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: EF-Hand 1%2C calcium-binding site (InterPro:IPR018247)%2C EF-HAND 2 (InterPro:IPR018249)%2C EF-hand-like domain (InterPro:IPR011992)%3B BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT5G44090.1)%3B Has 707 Blast hits to 703 proteins in 126 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 370%3B Fungi - 0%3B Plants - 160%3B Viruses - 0%3B Other Eukaryotes - 177 (source: NCBI BLink).; Dbxref=PMID:12372144, PMID:21478440, locus:2024254; locus_type=protein_coding
AT1G03960.6	chr1:001014191	0.0	W/1014191-1014237,1014414-1014543,1014767-1014872,1014951-1015050,1015199-1015304,1015428-1015518,1015684-1015825,1016079-1016226,1016340-1016449,1016795-1016951,1017058-1017183,1017332-1017472	AT1G03960.6 CDS AT1G03960 ID=AT1G03960.6; Parent=AT1G03960; Name=AT1G03960.6; Note=Calcium-binding EF hand family protein; computational_description=Calcium-binding EF hand family protein%3B FUNCTIONS IN: calcium ion binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: EF-Hand 1%2C calcium-binding site (InterPro:IPR018247)%2C EF-HAND 2 (InterPro:IPR018249)%2C EF-hand-like domain (InterPro:IPR011992)%3B BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT5G44090.1)%3B Has 707 Blast hits to 703 proteins in 126 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 370%3B Fungi - 0%3B Plants - 160%3B Viruses - 0%3B Other Eukaryotes - 177 (source: NCBI BLink).; Dbxref=PMID:12372144, PMID:21478440, locus:2024254; locus_type=protein_coding
AT1G03960.2	chr1:001014824	0.0	W/1014824-1014872,1014951-1015050,1015199-1015304,1015428-1015518,1015684-1015825,1016079-1016226,1016340-1016449,1016795-1016951,1017058-1017183,1017332-1017472	AT1G03960.2 CDS AT1G03960 ID=AT1G03960.2; Parent=AT1G03960; Name=AT1G03960.2; Note=Calcium-binding EF hand family protein; conf_class=2; computational_description=Calcium-binding EF hand family protein%3B FUNCTIONS IN: calcium ion binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: EF-Hand 1%2C calcium-binding site (InterPro:IPR018247)%2C EF-HAND 2 (InterPro:IPR018249)%2C EF-hand-like domain (InterPro:IPR011992)%3B BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT5G44090.1)%3B Has 707 Blast hits to 703 proteins in 126 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 370%3B Fungi - 0%3B Plants - 160%3B Viruses - 0%3B Other Eukaryotes - 177 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12372144, PMID:21478440, locus:2024254; locus_type=protein_coding
AT1G03960.3	chr1:001014824	0.0	W/1014824-1014872,1014951-1015050,1015199-1015304,1015428-1015518,1015684-1015825,1016079-1016226,1016340-1016449,1016795-1016951,1017058-1017183,1017332-1017472	AT1G03960.3 CDS AT1G03960 ID=AT1G03960.3; Parent=AT1G03960; Name=AT1G03960.3; Note=Calcium-binding EF hand family protein; Dbxref=PMID:12372144, PMID:21478440, locus:2024254; computational_description=Calcium-binding EF hand family protein%3B FUNCTIONS IN: calcium ion binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: EF-Hand 1%2C calcium-binding site (InterPro:IPR018247)%2C EF-HAND 2 (InterPro:IPR018249)%2C EF-hand-like domain (InterPro:IPR011992)%3B BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT5G44090.1)%3B Has 707 Blast hits to 703 proteins in 126 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 370%3B Fungi - 0%3B Plants - 160%3B Viruses - 0%3B Other Eukaryotes - 177 (source: NCBI BLink).; locus_type=protein_coding
AT1G03960.4	chr1:001014824	0.0	W/1014824-1014872,1014951-1015050,1015199-1015304,1015428-1015518,1015684-1015825,1016079-1016226,1016340-1016449,1016795-1016951,1017058-1017183,1017332-1017472	AT1G03960.4 CDS AT1G03960 ID=AT1G03960.4; Parent=AT1G03960; Name=AT1G03960.4; Note=Calcium-binding EF hand family protein; Dbxref=PMID:12372144, PMID:21478440, locus:2024254; computational_description=Calcium-binding EF hand family protein%3B FUNCTIONS IN: calcium ion binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: EF-Hand 1%2C calcium-binding site (InterPro:IPR018247)%2C EF-HAND 2 (InterPro:IPR018249)%2C EF-hand-like domain (InterPro:IPR011992)%3B BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT5G44090.1)%3B Has 707 Blast hits to 703 proteins in 126 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 370%3B Fungi - 0%3B Plants - 160%3B Viruses - 0%3B Other Eukaryotes - 177 (source: NCBI BLink).; locus_type=protein_coding
AT1G03960.7	chr1:001015233	0.0	W/1015233-1015304,1015428-1015518,1015684-1015825,1016079-1016226,1016340-1016449,1016795-1016951,1017058-1017183,1017332-1017472	AT1G03960.7 CDS AT1G03960 ID=AT1G03960.7; Parent=AT1G03960; Name=AT1G03960.7; Note=Calcium-binding EF hand family protein; computational_description=Calcium-binding EF hand family protein%3B FUNCTIONS IN: calcium ion binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: EF-Hand 1%2C calcium-binding site (InterPro:IPR018247)%2C EF-HAND 2 (InterPro:IPR018249)%2C EF-hand-like domain (InterPro:IPR011992)%3B BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT5G44090.1)%3B Has 707 Blast hits to 703 proteins in 126 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 370%3B Fungi - 0%3B Plants - 160%3B Viruses - 0%3B Other Eukaryotes - 177 (source: NCBI BLink).; Dbxref=PMID:12372144, PMID:21478440, locus:2024254; locus_type=protein_coding
AT1G04233.1	chr1:001018123	0.0	C/1018123-1018514	AT1G04233.1 antisense_lncRNA AT1G04233 ID=AT1G04233.1; Parent=AT1G04233; Name=AT1G04233.1; description=Natural antisense transcript overlaps with AT1G03970; Note=Natural antisense transcript overlaps with AT1G03970; locus_type=antisense_long_noncoding_rna
AT1G03970.1	chr1:001018237	0.0	W/1018237-1019049	AT1G03970.1 CDS AT1G03970 ID=AT1G03970.1; Parent=AT1G03970; Name=AT1G03970.1; Note=G-box binding factor 4; curator_summary=encodes a basic leucine zipper G-box binding factor that can bind to G-box motifs only as heterodimers with GBF2 or GBF3. A single amino acid change can confer G-box binding as homodimers.; conf_class=1; symbol=GBF4; full_name=G-box binding factor 4; computational_description=G-box binding factor 4 (GBF4)%3B FUNCTIONS IN: sequence-specific DNA binding%2C DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B LOCATED IN: nucleus%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827)%2C bZIP transcription factor%2C bZIP-1 (InterPro:IPR011616)%3B BEST Arabidopsis thaliana protein match is: Basic-leucine zipper (bZIP) transcription factor family protein (TAIR:AT5G44080.1)%3B Has 1357 Blast hits to 1357 proteins in 128 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 355%3B Fungi - 8%3B Plants - 931%3B Viruses - 0%3B Other Eukaryotes - 57 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:9193069, PMID:8146148, PMID:11118137, PMID:11906833, PMID:14576160, PMID:15047898, PMID:15226410, PMID:15561727, PMID:16731568, PMID:17577400, PMID:18650403, PMID:20736450, locus:2024224; locus_type=protein_coding
AT1G03980.1	chr1:001019311	0.0	C/1019311-1019394,1019604-1019779,1019906-1020092,1020187-1020414,1020513-1020564,1020655-1020818,1020982-1021194	AT1G03980.1 CDS AT1G03980 ID=AT1G03980.1; Parent=AT1G03980; Name=AT1G03980.1; Note=phytochelatin synthase 2; curator_summary=Encodes a protein with phytochelatin synthase activity which binds Cd2+ and Cd-glutathione complexes with high affinity. The protein has been postulated to be involved in Cd2+ tolerance. AtPCS2 expression appears to be less than that of AtPCS1%2C explaining the inability of endogenous AtPCS2 to substitute for AtPCS1 in the cad1-3 mutant (AtPCS1 null).; conf_class=2; symbol=PCS2; Alias=ATPCS2, phytochelatin synthase 2; full_name=phytochelatin synthase 2; computational_description=phytochelatin synthase 2 (PCS2)%3B CONTAINS InterPro DOMAIN/s: Phytochelatin synthase%2C C-terminal (InterPro:IPR015407)%2C Phytochelatin synthase (InterPro:IPR007719)%3B BEST Arabidopsis thaliana protein match is: phytochelatin synthase 1 (PCS1) (TAIR:AT5G44070.1)%3B Has 342 Blast hits to 342 proteins in 145 species: Archae - 0%3B Bacteria - 138%3B Metazoa - 36%3B Fungi - 7%3B Plants - 117%3B Viruses - 0%3B Other Eukaryotes - 44 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15750344, PMID:17253989, PMID:20304971, PMID:21369921, PMID:23496095, PMID:24821959, PMID:25559189, locus:2024172; locus_type=protein_coding
AT1G03980.2	chr1:001019311	0.0	C/1019311-1019394,1019604-1019779,1019906-1020092,1020187-1020414,1020513-1020564,1020655-1020818,1020982-1021443,1021800-1021871	AT1G03980.2 CDS AT1G03980 ID=AT1G03980.2; Parent=AT1G03980; Name=AT1G03980.2; Note=phytochelatin synthase 2; symbol=PCS2; Alias=ATPCS2, phytochelatin synthase 2; full_name=phytochelatin synthase 2; curator_summary=Encodes a protein with phytochelatin synthase activity which binds Cd2+ and Cd-glutathione complexes with high affinity. The protein has been postulated to be involved in Cd2+ tolerance. AtPCS2 expression appears to be less than that of AtPCS1%2C explaining the inability of endogenous AtPCS2 to substitute for AtPCS1 in the cad1-3 mutant (AtPCS1 null).; computational_description=phytochelatin synthase 2 (PCS2)%3B CONTAINS InterPro DOMAIN/s: Phytochelatin synthase%2C C-terminal (InterPro:IPR015407)%2C Phytochelatin synthase (InterPro:IPR007719)%3B BEST Arabidopsis thaliana protein match is: phytochelatin synthase 1 (PCS1) (TAIR:AT5G44070.1)%3B Has 342 Blast hits to 342 proteins in 145 species: Archae - 0%3B Bacteria - 138%3B Metazoa - 36%3B Fungi - 7%3B Plants - 117%3B Viruses - 0%3B Other Eukaryotes - 44 (source: NCBI BLink).; Dbxref=PMID:15750344, PMID:17253989, PMID:20304971, PMID:21369921, PMID:23496095, PMID:24821959, PMID:25559189, locus:2024172; locus_type=protein_coding
AT1G03980.3	chr1:001019311	0.0	C/1019311-1019394,1019604-1019779,1019906-1020092,1020187-1020414,1020513-1020564,1020655-1020818,1020982-1021220,1021287-1021443,1021800-1021871	AT1G03980.3 CDS AT1G03980 ID=AT1G03980.3; Parent=AT1G03980; Name=AT1G03980.3; Note=phytochelatin synthase 2; symbol=PCS2; Alias=ATPCS2, phytochelatin synthase 2; full_name=phytochelatin synthase 2; Dbxref=PMID:15750344, PMID:17253989, PMID:20304971, PMID:21369921, PMID:23496095, PMID:24821959, PMID:25559189, locus:2024172; curator_summary=Encodes a protein with phytochelatin synthase activity which binds Cd2+ and Cd-glutathione complexes with high affinity. The protein has been postulated to be involved in Cd2+ tolerance. AtPCS2 expression appears to be less than that of AtPCS1%2C explaining the inability of endogenous AtPCS2 to substitute for AtPCS1 in the cad1-3 mutant (AtPCS1 null).; computational_description=phytochelatin synthase 2 (PCS2)%3B CONTAINS InterPro DOMAIN/s: Phytochelatin synthase%2C C-terminal (InterPro:IPR015407)%2C Phytochelatin synthase (InterPro:IPR007719)%3B BEST Arabidopsis thaliana protein match is: phytochelatin synthase 1 (PCS1) (TAIR:AT5G44070.1)%3B Has 342 Blast hits to 342 proteins in 145 species: Archae - 0%3B Bacteria - 138%3B Metazoa - 36%3B Fungi - 7%3B Plants - 117%3B Viruses - 0%3B Other Eukaryotes - 44 (source: NCBI BLink).; locus_type=protein_coding
AT1G03980.4	chr1:001019871	0.0	C/1019871-1020092,1020187-1020414,1020513-1020564,1020655-1020818,1020982-1021220,1021287-1021443,1021800-1021871	AT1G03980.4 CDS AT1G03980 ID=AT1G03980.4; Parent=AT1G03980; Name=AT1G03980.4; Note=phytochelatin synthase 2; symbol=PCS2; Alias=ATPCS2, phytochelatin synthase 2; full_name=phytochelatin synthase 2; curator_summary=Encodes a protein with phytochelatin synthase activity which binds Cd2+ and Cd-glutathione complexes with high affinity. The protein has been postulated to be involved in Cd2+ tolerance. AtPCS2 expression appears to be less than that of AtPCS1%2C explaining the inability of endogenous AtPCS2 to substitute for AtPCS1 in the cad1-3 mutant (AtPCS1 null).; computational_description=phytochelatin synthase 2 (PCS2)%3B CONTAINS InterPro DOMAIN/s: Phytochelatin synthase%2C C-terminal (InterPro:IPR015407)%2C Phytochelatin synthase (InterPro:IPR007719)%3B BEST Arabidopsis thaliana protein match is: phytochelatin synthase 1 (PCS1) (TAIR:AT5G44070.1)%3B Has 342 Blast hits to 342 proteins in 145 species: Archae - 0%3B Bacteria - 138%3B Metazoa - 36%3B Fungi - 7%3B Plants - 117%3B Viruses - 0%3B Other Eukaryotes - 44 (source: NCBI BLink).; Dbxref=PMID:15750344, PMID:17253989, PMID:20304971, PMID:21369921, PMID:23496095, PMID:24821959, PMID:25559189, locus:2024172; locus_type=protein_coding
AT1G03982.1	chr1:001022424	0.0	C/1022424-1022746,1022831-1022912,1023008-1023136	AT1G03982.1 CDS AT1G03982 ID=AT1G03982.1; Parent=AT1G03982; Name=AT1G03982.1; Note=PAK-box/P21-Rho-binding family protein; conf_class=1; computational_description=PAK-box/P21-Rho-binding family protein%3B CONTAINS InterPro DOMAIN/s: PAK-box/P21-Rho-binding (InterPro:IPR000095)%3B BEST Arabidopsis thaliana protein match is: PAK-box/P21-Rho-binding family protein (TAIR:AT4G28556.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:1009023072; locus_type=protein_coding
AT1G03990.1	chr1:001024847	0.0	W/1024847-1025095,1025293-1025568,1025865-1027616	AT1G03990.1 CDS AT1G03990 ID=AT1G03990.1; Parent=AT1G03990; Name=AT1G03990.1; Note=Long-chain fatty alcohol dehydrogenase family protein; conf_class=6; computational_description=Long-chain fatty alcohol dehydrogenase family protein%3B FUNCTIONS IN: oxidoreductase activity%2C oxidoreductase activity%2C acting on CH-OH group of donors%2C FAD binding%3B CONTAINS InterPro DOMAIN/s: Glucose-methanol-choline oxidoreductase%2C N-terminal (InterPro:IPR000172)%2C Glucose-methanol-choline oxidoreductase%2C C-terminal (InterPro:IPR007867)%2C Long-chain fatty alcohol dehydrogenase (InterPro:IPR012400)%3B BEST Arabidopsis thaliana protein match is: Long-chain fatty alcohol dehydrogenase family protein (TAIR:AT4G28570.1)%3B Has 3131 Blast hits to 2994 proteins in 799 species: Archae - 23%3B Bacteria - 2103%3B Metazoa - 14%3B Fungi - 174%3B Plants - 167%3B Viruses - 0%3B Other Eukaryotes - 650 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:15358540, PMID:16805732, locus:2024157; locus_type=protein_coding
AT1G04000.1	chr1:001028415	0.0	C/1028415-1028873	AT1G04000.1 CDS AT1G04000 ID=AT1G04000.1; Parent=AT1G04000; Name=AT1G04000.1; Note=hypothetical protein; conf_class=1; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44060.1)%3B Has 62 Blast hits to 62 proteins in 10 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 62%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:18775970, PMID:20736450, locus:2024137; locus_type=protein_coding
AT1G04010.1	chr1:001031703	0.0	C/1031703-1031784,1031901-1031985,1032059-1032163,1032244-1032412,1032582-1032653,1032808-1032859,1033187-1033281,1033438-1033537,1033876-1034029,1034122-1034338,1034702-1034778,1034886-1035055,1035140-1035284,1035383-1035518,1035886-1036128	AT1G04010.1 CDS AT1G04010 ID=AT1G04010.1; Parent=AT1G04010; Name=AT1G04010.1; Note=phospholipid sterol acyl transferase 1; conf_class=2; symbol=PSAT1; Alias=ATPSAT1, ERP1, enhanced response to Phytophthora 1; full_name=phospholipid sterol acyl transferase 1; computational_description=phospholipid sterol acyl transferase 1 (PSAT1)%3B CONTAINS InterPro DOMAIN/s: Lecithin:cholesterol acyltransferase (InterPro:IPR003386)%3B BEST Arabidopsis thaliana protein match is: phospholipid:diacylglycerol acyltransferase (TAIR:AT5G13640.1)%3B Has 615 Blast hits to 606 proteins in 192 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 241%3B Fungi - 118%3B Plants - 150%3B Viruses - 0%3B Other Eukaryotes - 104 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12566579, PMID:15247387, PMID:15355352, PMID:19923239, PMID:23072470, PMID:23505340, locus:2024117; locus_type=protein_coding
AT1G04020.1	chr1:001036610	0.0	W/1036610-1036692,1036797-1036850,1036944-1037014,1037089-1037441,1037531-1037746,1037924-1038175,1038276-1038376,1038519-1038705,1038801-1038898,1038995-1039085,1039224-1039389,1039488-1039606,1039695-1040045	AT1G04020.1 CDS AT1G04020 ID=AT1G04020.1; Parent=AT1G04020; Name=AT1G04020.1; Note=breast cancer associated RING 1; curator_summary=Encodes a protein containing two tandem BRCA1 C-Terminal (BRCT) domains%2C which function in phosphorylation-dependent protein%E2%80%93protein interactions.Loss of function mutations cause defects in meristem organization due to failure to repress WUS. BARD1 binds to WUS promoter and over expression of BARD reduces the extent of WUS expression.; conf_class=2; symbol=BARD1; Alias=ATBARD1, ROW1, REPRESSOR OF WUSCHEL1; full_name=breast cancer associated RING 1; computational_description=breast cancer associated RING 1 (BARD1)%3B FUNCTIONS IN: transcription coactivator activity%2C DNA binding%3B INVOLVED IN: DNA repair%2C regulation of meristem structural organization%2C leaf development%3B LOCATED IN: intracellular%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type%2C conserved site (InterPro:IPR017907)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C PHD-type (InterPro:IPR001965)%2C BRCT (InterPro:IPR001357)%3B BEST Arabidopsis thaliana protein match is: breast cancer susceptibility1 (TAIR:AT4G21070.1)%3B Has 5889 Blast hits to 5527 proteins in 313 species: Archae - 0%3B Bacteria - 10%3B Metazoa - 4435%3B Fungi - 374%3B Plants - 570%3B Viruses - 11%3B Other Eukaryotes - 489 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15645454, PMID:16957774, PMID:18591352, PMID:19704708, PMID:20736450, PMID:22589469, PMID:22629260, PMID:23616605, PMID:25631790, locus:2024244; locus_type=protein_coding
AT1G04020.2	chr1:001036610	0.0	W/1036610-1036692,1036797-1036850,1036944-1037018,1037093-1037441,1037531-1037746,1037924-1038175,1038276-1038376,1038519-1038705,1038801-1038898,1038995-1039085,1039224-1039389,1039488-1039606,1039695-1040045	AT1G04020.2 CDS AT1G04020 ID=AT1G04020.2; Parent=AT1G04020; Name=AT1G04020.2; Note=breast cancer associated RING 1; curator_summary=Encodes a protein containing two tandem BRCA1 C-Terminal (BRCT) domains%2C which function in phosphorylation-dependent protein%E2%80%93protein interactions.Loss of function mutations cause defects in meristem organization due to failure to repress WUS. BARD1 binds to WUS promoter and over expression of BARD reduces the extent of WUS expression.; conf_class=2; symbol=BARD1; Alias=ATBARD1, ROW1, REPRESSOR OF WUSCHEL1; full_name=breast cancer associated RING 1; computational_description=breast cancer associated RING 1 (BARD1)%3B FUNCTIONS IN: transcription coactivator activity%2C DNA binding%3B INVOLVED IN: DNA repair%2C regulation of meristem structural organization%2C leaf development%3B LOCATED IN: intracellular%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type%2C conserved site (InterPro:IPR017907)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C PHD-type (InterPro:IPR001965)%2C BRCT (InterPro:IPR001357)%3B BEST Arabidopsis thaliana protein match is: breast cancer susceptibility1 (TAIR:AT4G21070.1)%3B Has 5889 Blast hits to 5527 proteins in 313 species: Archae - 0%3B Bacteria - 10%3B Metazoa - 4435%3B Fungi - 374%3B Plants - 570%3B Viruses - 11%3B Other Eukaryotes - 489 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15645454, PMID:16957774, PMID:18591352, PMID:19704708, PMID:20736450, PMID:22589469, PMID:22629260, PMID:23616605, PMID:25631790, locus:2024244; locus_type=protein_coding
AT1G04030.1	chr1:001040597	0.0	W/1040597-1040680,1040874-1040974,1041049-1042093,1042239-1042313	AT1G04030.1 CDS AT1G04030 ID=AT1G04030.1; Parent=AT1G04030; Name=AT1G04030.1; Note=eisosome protein; conf_class=2; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44040.1)%3B Has 1835 Blast hits to 1511 proteins in 238 species: Archae - 7%3B Bacteria - 164%3B Metazoa - 377%3B Fungi - 135%3B Plants - 187%3B Viruses - 22%3B Other Eukaryotes - 943 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12169696, PMID:12566592, PMID:18775970, PMID:20736450, locus:2024177; locus_type=protein_coding
AT1G04030.2	chr1:001040597	0.0	W/1040597-1040680,1040874-1040974,1041049-1042093,1042239-1042313	AT1G04030.2 CDS AT1G04030 ID=AT1G04030.2; Parent=AT1G04030; Name=AT1G04030.2; Note=eisosome protein; Dbxref=PMID:12169696, PMID:12566592, PMID:18775970, PMID:20736450, locus:2024177; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44040.1)%3B Has 1835 Blast hits to 1511 proteins in 238 species: Archae - 7%3B Bacteria - 164%3B Metazoa - 377%3B Fungi - 135%3B Plants - 187%3B Viruses - 22%3B Other Eukaryotes - 943 (source: NCBI BLink).; locus_type=protein_coding
AT1G04040.1	chr1:001042564	0.0	C/1042564-1042741,1042954-1043163,1043392-1043819	AT1G04040.1 CDS AT1G04040 ID=AT1G04040.1; Parent=AT1G04040; Name=AT1G04040.1; Note=HAD superfamily%2C subfamily IIIB acid phosphatase; conf_class=2; computational_description=HAD superfamily%2C subfamily IIIB acid phosphatase %3B FUNCTIONS IN: acid phosphatase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cell wall%2C plasma membrane%2C vacuole%2C plant-type cell wall%3B EXPRESSED IN: 19 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: Acid phosphatase (Class B) (InterPro:IPR005519)%2C Vegetative storage protein/acid phosphatase (InterPro:IPR014403)%2C Acid phosphatase%2C plant (InterPro:IPR010028)%3B BEST Arabidopsis thaliana protein match is: HAD superfamily%2C subfamily IIIB acid phosphatase (TAIR:AT5G44020.1)%3B Has 1079 Blast hits to 1077 proteins in 335 species: Archae - 0%3B Bacteria - 592%3B Metazoa - 2%3B Fungi - 0%3B Plants - 364%3B Viruses - 0%3B Other Eukaryotes - 121 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15215502, PMID:16258019, PMID:16287169, PMID:16972165, PMID:18650403, PMID:20736450, locus:2024102; locus_type=protein_coding
AT1G04237.1	chr1:001043118	0.0	W/1043118-1043415	AT1G04237.1 antisense_lncRNA AT1G04237 ID=AT1G04237.1; Parent=AT1G04237; Name=AT1G04237.1; description=Natural antisense transcript overlaps with AT1G04040; Note=Natural antisense transcript overlaps with AT1G04040; locus_type=antisense_long_noncoding_rna
AT1G04050.1	chr1:001045967	0.0	C/1045967-1045995,1046099-1046195,1046329-1046379,1046470-1046536,1046624-1046877,1046987-1048005,1048152-1048422,1048499-1048630,1048720-1048758,1048853-1048915,1049014-1049196	AT1G04050.1 CDS AT1G04050 ID=AT1G04050.1; Parent=AT1G04050; Name=AT1G04050.1; Note=histone-lysine N-methyltransferase SUVR2-like protein; curator_summary=Encodes SUVR1%2C one of the four closely related Arabidopsis SUVR proteins that belong to the SU(VAR)3-9 subgroup of SET-domain proteins. Proteins containing the evolutionarily conserved SET domain are involved in regulation of eukaryotic gene expression and chromatin structure through their histone lysine methyltransferase (HMTase) activity. SUVR1%2C SUVR2 and SUVR4 proteins contain a novel domain at their N-terminus%2C and a SUVR specific region preceding the SET domain. Localized to the nucleolus%2C maybe involved in regulation of rRNA expression.; conf_class=4; symbol=SUVR1; Alias=SDG13, SET DOMAIN PROTEIN 13; full_name=homolog of SU(var)3-9 1; computational_description=homolog of SU(var)3-9 1 (SUVR1)%3B FUNCTIONS IN: zinc ion binding%2C histone-lysine N-methyltransferase activity%3B INVOLVED IN: chromatin modification%3B LOCATED IN: nucleolus%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214)%2C WIYLD domain (InterPro:IPR018848)%2C Pre-SET zinc-binding sub-group (InterPro:IPR003606)%2C Pre-SET domain (InterPro:IPR007728)%3B BEST Arabidopsis thaliana protein match is: SET-domain containing protein lysine methyltransferase family protein (TAIR:AT5G43990.4)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:12805620, PMID:15659850, PMID:16489130, PMID:23313553, PMID:24625295, PMID:25420628, locus:2024229; locus_type=protein_coding
AT1G04050.2	chr1:001045967	0.0	C/1045967-1045995,1046099-1046195,1046329-1046379,1046470-1046536,1046624-1046877,1046987-1048005,1048152-1048422,1048499-1048630,1048720-1048758,1048853-1048915,1049014-1049196	AT1G04050.2 CDS AT1G04050 ID=AT1G04050.2; Parent=AT1G04050; Name=AT1G04050.2; Note=histone-lysine N-methyltransferase SUVR2-like protein; symbol=SUVR1; Alias=SDG13, SET DOMAIN PROTEIN 13; full_name=homolog of SU(var)3-9 1; Dbxref=PMID:12805620, PMID:15659850, PMID:16489130, PMID:23313553, PMID:24625295, PMID:25420628, locus:2024229; curator_summary=Encodes SUVR1%2C one of the four closely related Arabidopsis SUVR proteins that belong to the SU(VAR)3-9 subgroup of SET-domain proteins. Proteins containing the evolutionarily conserved SET domain are involved in regulation of eukaryotic gene expression and chromatin structure through their histone lysine methyltransferase (HMTase) activity. SUVR1%2C SUVR2 and SUVR4 proteins contain a novel domain at their N-terminus%2C and a SUVR specific region preceding the SET domain. Localized to the nucleolus%2C maybe involved in regulation of rRNA expression.; computational_description=homolog of SU(var)3-9 1 (SUVR1)%3B FUNCTIONS IN: zinc ion binding%2C histone-lysine N-methyltransferase activity%3B INVOLVED IN: chromatin modification%3B LOCATED IN: nucleolus%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214)%2C WIYLD domain (InterPro:IPR018848)%2C Pre-SET zinc-binding sub-group (InterPro:IPR003606)%2C Pre-SET domain (InterPro:IPR007728)%3B BEST Arabidopsis thaliana protein match is: SET-domain containing protein lysine methyltransferase family protein (TAIR:AT5G43990.4)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; locus_type=protein_coding
AT1G04050.3	chr1:001045967	0.0	C/1045967-1045995,1046099-1046195,1046329-1046379,1046470-1046536,1046624-1046877,1046987-1048005,1048152-1048422,1048499-1048603	AT1G04050.3 CDS AT1G04050 ID=AT1G04050.3; Parent=AT1G04050; Name=AT1G04050.3; Note=histone-lysine N-methyltransferase SUVR2-like protein; symbol=SUVR1; Alias=SDG13, SET DOMAIN PROTEIN 13; full_name=homolog of SU(var)3-9 1; curator_summary=Encodes SUVR1%2C one of the four closely related Arabidopsis SUVR proteins that belong to the SU(VAR)3-9 subgroup of SET-domain proteins. Proteins containing the evolutionarily conserved SET domain are involved in regulation of eukaryotic gene expression and chromatin structure through their histone lysine methyltransferase (HMTase) activity. SUVR1%2C SUVR2 and SUVR4 proteins contain a novel domain at their N-terminus%2C and a SUVR specific region preceding the SET domain. Localized to the nucleolus%2C maybe involved in regulation of rRNA expression.; computational_description=homolog of SU(var)3-9 1 (SUVR1)%3B FUNCTIONS IN: zinc ion binding%2C histone-lysine N-methyltransferase activity%3B INVOLVED IN: chromatin modification%3B LOCATED IN: nucleolus%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214)%2C WIYLD domain (InterPro:IPR018848)%2C Pre-SET zinc-binding sub-group (InterPro:IPR003606)%2C Pre-SET domain (InterPro:IPR007728)%3B BEST Arabidopsis thaliana protein match is: SET-domain containing protein lysine methyltransferase family protein (TAIR:AT5G43990.4)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=PMID:12805620, PMID:15659850, PMID:16489130, PMID:23313553, PMID:24625295, PMID:25420628, locus:2024229; locus_type=protein_coding
AT1G04070.1	chr1:001050832	0.0	C/1050832-1051116	AT1G04070.1 CDS AT1G04070 ID=AT1G04070.1; Parent=AT1G04070; Name=AT1G04070.1; Note=translocase of outer membrane 22-I; curator_summary=Subunit of the TOM complex%2C a translocase in the outer mitochondrial membrane that selectively allows proteins with a mitochondrial targeting sequence to enter the mitochondrion.; conf_class=1; symbol=TOM22-I; Alias=ATTOM22-I; full_name=translocase of outer membrane 22-I; computational_description=translocase of outer membrane 22-I (TOM22-I)%3B FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity%3B INVOLVED IN: protein targeting to mitochondrion%3B LOCATED IN: mitochondrial outer membrane translocase complex%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Mitochondrial outer membrane translocase complex%2C subunit Tom22%2C plant (InterPro:IPR017411)%3B BEST Arabidopsis thaliana protein match is: translocase of outer membrane 22-V (TAIR:AT5G43970.1)%3B Has 73 Blast hits to 73 proteins in 17 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 73%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:10889230, PMID:18650403, PMID:21612577, locus:2020275; locus_type=protein_coding
AT1G04080.1	chr1:001051803	0.0	W/1051803-1052037,1052160-1052269,1052546-1052775,1053327-1053494,1053807-1054200,1054663-1054806,1054936-1055088,1055174-1055290,1055478-1055708,1055798-1056103,1056187-1056288,1056434-1056550	AT1G04080.1 CDS AT1G04080 ID=AT1G04080.1; Parent=AT1G04080; Name=AT1G04080.1; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; conf_class=2; symbol=PRP39; computational_description=PRP39%3B FUNCTIONS IN: binding%3B INVOLVED IN: regulation of timing of transition from vegetative to reproductive phase%3B LOCATED IN: intracellular%2C nucleus%3B EXPRESSED IN: 28 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA-processing protein%2C HAT helix (InterPro:IPR003107)%2C Tetratricopeptide-like helical (InterPro:IPR011990)%2C Suppressor of forked (InterPro:IPR008847)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G46400.1)%3B Has 3917 Blast hits to 3180 proteins in 483 species: Archae - 0%3B Bacteria - 599%3B Metazoa - 1588%3B Fungi - 801%3B Plants - 439%3B Viruses - 72%3B Other Eukaryotes - 418 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16807317, PMID:17380304, PMID:17551672, locus:2020265; locus_type=protein_coding
AT1G04080.3	chr1:001051803	0.0	W/1051803-1052037,1052160-1052269,1052546-1052775,1053327-1053494,1053807-1054200,1054285-1054385,1054465-1054528,1054663-1054806,1054936-1055088,1055174-1055290,1055478-1055708,1055798-1056103,1056187-1056288,1056434-1056550	AT1G04080.3 CDS AT1G04080 ID=AT1G04080.3; Parent=AT1G04080; Name=AT1G04080.3; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; conf_class=6; symbol=PRP39; computational_description=PRP39%3B FUNCTIONS IN: binding%3B INVOLVED IN: regulation of timing of transition from vegetative to reproductive phase%3B LOCATED IN: intracellular%2C nucleus%3B EXPRESSED IN: 28 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA-processing protein%2C HAT helix (InterPro:IPR003107)%2C Tetratricopeptide-like helical (InterPro:IPR011990)%2C Suppressor of forked (InterPro:IPR008847)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G46400.1)%3B Has 3917 Blast hits to 3180 proteins in 483 species: Archae - 0%3B Bacteria - 599%3B Metazoa - 1588%3B Fungi - 801%3B Plants - 439%3B Viruses - 72%3B Other Eukaryotes - 418 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:16807317, PMID:17380304, PMID:17551672, locus:2020265; locus_type=protein_coding
AT1G04080.4	chr1:001051803	0.0	W/1051803-1052037,1052160-1052269,1052546-1052775,1053327-1053494,1053807-1054200,1054663-1054806,1054936-1055088,1055174-1055290,1055478-1055708,1055798-1056103,1056187-1056288,1056434-1056550	AT1G04080.4 CDS AT1G04080 ID=AT1G04080.4; Parent=AT1G04080; Name=AT1G04080.4; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; symbol=PRP39; Dbxref=PMID:16807317, PMID:17380304, PMID:17551672, locus:2020265; computational_description=PRP39%3B FUNCTIONS IN: binding%3B INVOLVED IN: regulation of timing of transition from vegetative to reproductive phase%3B LOCATED IN: intracellular%2C nucleus%3B EXPRESSED IN: 28 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA-processing protein%2C HAT helix (InterPro:IPR003107)%2C Tetratricopeptide-like helical (InterPro:IPR011990)%2C Suppressor of forked (InterPro:IPR008847)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G46400.1)%3B Has 3917 Blast hits to 3180 proteins in 483 species: Archae - 0%3B Bacteria - 599%3B Metazoa - 1588%3B Fungi - 801%3B Plants - 439%3B Viruses - 72%3B Other Eukaryotes - 418 (source: NCBI BLink).; locus_type=protein_coding
AT1G04080.2	chr1:001053171	0.0	W/1053171-1053187,1053327-1053494,1053807-1054200,1054663-1054806,1054936-1055088,1055174-1055290,1055478-1055708,1055798-1056103,1056187-1056288,1056434-1056550	AT1G04080.2 CDS AT1G04080 ID=AT1G04080.2; Parent=AT1G04080; Name=AT1G04080.2; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; conf_class=2; symbol=PRP39; computational_description=PRP39%3B FUNCTIONS IN: binding%3B INVOLVED IN: regulation of timing of transition from vegetative to reproductive phase%3B LOCATED IN: intracellular%2C nucleus%3B EXPRESSED IN: 28 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA-processing protein%2C HAT helix (InterPro:IPR003107)%2C Tetratricopeptide-like helical (InterPro:IPR011990)%2C Suppressor of forked (InterPro:IPR008847)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G46400.1)%3B Has 3917 Blast hits to 3180 proteins in 483 species: Archae - 0%3B Bacteria - 599%3B Metazoa - 1588%3B Fungi - 801%3B Plants - 439%3B Viruses - 72%3B Other Eukaryotes - 418 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16807317, PMID:17380304, PMID:17551672, locus:2020265; locus_type=protein_coding
AT1G04080.5	chr1:001053409	0.0	W/1053409-1053494,1053807-1054200,1054663-1054806,1054936-1055088,1055174-1055290,1055478-1055708,1055798-1056103,1056187-1056288,1056434-1056550	AT1G04080.5 CDS AT1G04080 ID=AT1G04080.5; Parent=AT1G04080; Name=AT1G04080.5; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; symbol=PRP39; computational_description=PRP39%3B FUNCTIONS IN: binding%3B INVOLVED IN: regulation of timing of transition from vegetative to reproductive phase%3B LOCATED IN: intracellular%2C nucleus%3B EXPRESSED IN: 28 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA-processing protein%2C HAT helix (InterPro:IPR003107)%2C Tetratricopeptide-like helical (InterPro:IPR011990)%2C Suppressor of forked (InterPro:IPR008847)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G46400.1)%3B Has 3917 Blast hits to 3180 proteins in 483 species: Archae - 0%3B Bacteria - 599%3B Metazoa - 1588%3B Fungi - 801%3B Plants - 439%3B Viruses - 72%3B Other Eukaryotes - 418 (source: NCBI BLink).; Dbxref=PMID:16807317, PMID:17380304, PMID:17551672, locus:2020265; locus_type=protein_coding
AT1G04090.1	chr1:001057225	0.0	W/1057225-1057330,1057635-1059247	AT1G04090.1 CDS AT1G04090 ID=AT1G04090.1; Parent=AT1G04090; Name=AT1G04090.1; Note=vacuolar sorting-associated protein (DUF946); conf_class=2; computational_description=Plant protein of unknown function (DUF946)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF946 (InterPro:IPR009291)%3B BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF946) (TAIR:AT5G43950.1)%3B Has 349 Blast hits to 319 proteins in 89 species: Archae - 0%3B Bacteria - 23%3B Metazoa - 11%3B Fungi - 104%3B Plants - 206%3B Viruses - 0%3B Other Eukaryotes - 5 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14500793, PMID:18775970, PMID:20736450, locus:2020210; locus_type=protein_coding
AT1G04105.1	chr1:001059730	0.0	C/1059730-1060065,1060283-1060348	AT1G04105.1 CDS AT1G04105 ID=AT1G04105.1; Parent=AT1G04105; Name=AT1G04105.1; Note=hypothetical protein; locus_type=protein_coding
AT1G04100.1	chr1:001059809	0.0	W/1059809-1060080,1060324-1060634,1060732-1060864,1060957-1061026	AT1G04100.1 CDS AT1G04100 ID=AT1G04100.1; Parent=AT1G04100; Name=AT1G04100.1; Note=indoleacetic acid-induced protein 10; curator_summary=Auxin induced gene%2C IAA10 (IAA10).; conf_class=2; symbol=IAA10; full_name=indoleacetic acid-induced protein 10; computational_description=indoleacetic acid-induced protein 10 (IAA10)%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: response to auxin stimulus%2C response to chitin%3B LOCATED IN: nucleus%3B EXPRESSED IN: 7 plant structures%3B EXPRESSED DURING: 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525)%2C AUX/IAA protein (InterPro:IPR003311)%3B BEST Arabidopsis thaliana protein match is: indole-3-acetic acid inducible 11 (TAIR:AT4G28640.3)%3B Has 1513 Blast hits to 1512 proteins in 70 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1512%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:12036262, PMID:14756312, PMID:15078335, PMID:15247399, PMID:15681455, PMID:16367961, PMID:16489122, PMID:16673935, PMID:16901781, PMID:17722694, PMID:18180456, PMID:18287490, PMID:20736450, PMID:22264733, locus:2020255; locus_type=protein_coding
AT1G04110.1	chr1:001061457	0.0	C/1061457-1063784	AT1G04110.1 CDS AT1G04110 ID=AT1G04110.1; Parent=AT1G04110; Name=AT1G04110.1; Note=Subtilase family protein; curator_summary=Initially identified as a mutation affecting stomatal development and distribution. Encodes a protein similar to serine proteases.; conf_class=1; symbol=SDD1; Alias=AtSDD1; full_name=STOMATAL DENSITY AND DISTRIBUTION 1; computational_description=STOMATAL DENSITY AND DISTRIBUTION (SDD1)%3B CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137)%2C Proteinase inhibitor%2C propeptide (InterPro:IPR009020)%2C Peptidase S8/S53%2C subtilisin/kexin/sedolisin (InterPro:IPR000209)%2C Peptidase S8%2C subtilisin-related (InterPro:IPR015500)%2C Peptidase S8/S53%2C subtilisin%2C active site (InterPro:IPR022398)%2C Proteinase inhibitor I9%2C subtilisin propeptide (InterPro:IPR010259)%3B BEST Arabidopsis thaliana protein match is: Subtilase family protein (TAIR:AT2G05920.1)%3B Has 8825 Blast hits to 7601 proteins in 1230 species: Archae - 300%3B Bacteria - 5187%3B Metazoa - 188%3B Fungi - 495%3B Plants - 1932%3B Viruses - 0%3B Other Eukaryotes - 723 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:10809670, PMID:11641073, PMID:12119372, PMID:12554730, PMID:18266617, PMID:19008449, PMID:19565615, PMID:19398336, PMID:19728150, PMID:20149115, PMID:20736450, PMID:21169508, PMID:21691149, PMID:22407427, PMID:22396800, PMID:25043023, locus:2020245; locus_type=protein_coding
AT1G04120.1	chr1:001064848	0.0	C/1064848-1064960,1065055-1065294,1065380-1065443,1065550-1065855,1065935-1066149,1066231-1066525,1066607-1066771,1066852-1067550,1067763-1067849,1067927-1068247,1068357-1070396	AT1G04120.1 CDS AT1G04120 ID=AT1G04120.1; Parent=AT1G04120; Name=AT1G04120.1; Note=multidrug resistance-associated protein 5; curator_summary=encodes a high-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytate storage. It is a member of MRP subfamily / ABC transporter subfamily C.; conf_class=2; symbol=ABCC5; Alias=ATABCC5, Arabidopsis thaliana ATP-binding cassette C5, ATMRP5, multidrug resistance-associated protein 5, MRP5, MULTIDRUG RESISTANCE PROTEIN 5, MRP5, multidrug resistance-associated protein 5; full_name=ATP-binding cassette C5; computational_description=multidrug resistance-associated protein 5 (MRP5)%3B FUNCTIONS IN: ATPase activity%2C coupled to transmembrane movement of substances%2C sulfonylurea receptor activity%3B INVOLVED IN: response to salt stress%2C cellular potassium ion homeostasis%3B LOCATED IN: vacuolar membrane%2C plasma membrane%2C plant-type vacuole%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C ABC transporter-like (InterPro:IPR003439)%2C ABC transporter%2C transmembrane domain%2C type 1 (InterPro:IPR011527)%2C ABC transporter integral membrane type 1 (InterPro:IPR017940)%2C ABC transporter%2C transmembrane domain (InterPro:IPR001140)%2C ABC transporter%2C conserved site (InterPro:IPR017871)%3B BEST Arabidopsis thaliana protein match is: multidrug resistance-associated protein 3 (TAIR:AT3G13080.1)%3B Has 705301 Blast hits to 367091 proteins in 4105 species: Archae - 12555%3B Bacteria - 572920%3B Metazoa - 12444%3B Fungi - 7893%3B Plants - 6883%3B Viruses - 23%3B Other Eukaryotes - 92583 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11296221, PMID:11346655, PMID:11855639, PMID:12430019, PMID:12943546, PMID:12942173, PMID:14684837, PMID:15133126, PMID:15381434, PMID:16618929, PMID:16684236, PMID:17028323, PMID:17098742, PMID:17164256, PMID:17905899, PMID:18065561, PMID:18299247, PMID:18775970, PMID:19797057, PMID:21078981, PMID:21698461, PMID:22783269, locus:2020235; locus_type=protein_coding
AT1G04120.2	chr1:001064848	0.0	C/1064848-1064960,1065055-1065279,1065380-1065443,1065550-1065855,1065935-1066149,1066231-1066525,1066607-1066771,1066852-1067550,1067763-1067849,1067927-1068247,1068357-1070396	AT1G04120.2 CDS AT1G04120 ID=AT1G04120.2; Parent=AT1G04120; Name=AT1G04120.2; Note=multidrug resistance-associated protein 5; curator_summary=encodes a high-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytate storage. It is a member of MRP subfamily / ABC transporter subfamily C.; conf_class=4; symbol=ABCC5; Alias=ATABCC5, Arabidopsis thaliana ATP-binding cassette C5, ATMRP5, multidrug resistance-associated protein 5, MRP5, MULTIDRUG RESISTANCE PROTEIN 5, MRP5, multidrug resistance-associated protein 5; full_name=ATP-binding cassette C5; computational_description=multidrug resistance-associated protein 5 (MRP5)%3B FUNCTIONS IN: ATPase activity%2C coupled to transmembrane movement of substances%2C sulfonylurea receptor activity%3B INVOLVED IN: response to salt stress%2C cellular potassium ion homeostasis%3B LOCATED IN: vacuolar membrane%2C plasma membrane%2C plant-type vacuole%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C ABC transporter-like (InterPro:IPR003439)%2C ABC transporter%2C transmembrane domain%2C type 1 (InterPro:IPR011527)%2C ABC transporter integral membrane type 1 (InterPro:IPR017940)%2C ABC transporter%2C transmembrane domain (InterPro:IPR001140)%2C ABC transporter%2C conserved site (InterPro:IPR017871)%3B BEST Arabidopsis thaliana protein match is: multidrug resistance-associated protein 3 (TAIR:AT3G13080.1)%3B Has 705301 Blast hits to 367091 proteins in 4105 species: Archae - 12555%3B Bacteria - 572920%3B Metazoa - 12444%3B Fungi - 7893%3B Plants - 6883%3B Viruses - 23%3B Other Eukaryotes - 92583 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:11296221, PMID:11346655, PMID:11855639, PMID:12430019, PMID:12943546, PMID:12942173, PMID:14684837, PMID:15133126, PMID:15381434, PMID:16618929, PMID:16684236, PMID:17028323, PMID:17098742, PMID:17164256, PMID:17905899, PMID:18065561, PMID:18299247, PMID:18775970, PMID:19797057, PMID:21078981, PMID:21698461, PMID:22783269, locus:2020235; locus_type=protein_coding
AT1G04120.3	chr1:001064848	0.0	C/1064848-1064960,1065055-1065294,1065380-1065443,1065550-1065855,1065935-1066149,1066231-1066525,1066607-1066771,1066852-1067550,1067763-1067849,1067927-1068247,1068357-1068736,1068842-1070396	AT1G04120.3 CDS AT1G04120 ID=AT1G04120.3; Parent=AT1G04120; Name=AT1G04120.3; Note=multidrug resistance-associated protein 5; symbol=ABCC5; Alias=ATABCC5, Arabidopsis thaliana ATP-binding cassette C5, ATMRP5, multidrug resistance-associated protein 5, MRP5, MULTIDRUG RESISTANCE PROTEIN 5, MRP5, multidrug resistance-associated protein 5; full_name=ATP-binding cassette C5; curator_summary=encodes a high-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytate storage. It is a member of MRP subfamily / ABC transporter subfamily C.; computational_description=multidrug resistance-associated protein 5 (MRP5)%3B FUNCTIONS IN: ATPase activity%2C coupled to transmembrane movement of substances%2C sulfonylurea receptor activity%3B INVOLVED IN: response to salt stress%2C cellular potassium ion homeostasis%3B LOCATED IN: vacuolar membrane%2C plasma membrane%2C plant-type vacuole%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C ABC transporter-like (InterPro:IPR003439)%2C ABC transporter%2C transmembrane domain%2C type 1 (InterPro:IPR011527)%2C ABC transporter integral membrane type 1 (InterPro:IPR017940)%2C ABC transporter%2C transmembrane domain (InterPro:IPR001140)%2C ABC transporter%2C conserved site (InterPro:IPR017871)%3B BEST Arabidopsis thaliana protein match is: multidrug resistance-associated protein 3 (TAIR:AT3G13080.1)%3B Has 705301 Blast hits to 367091 proteins in 4105 species: Archae - 12555%3B Bacteria - 572920%3B Metazoa - 12444%3B Fungi - 7893%3B Plants - 6883%3B Viruses - 23%3B Other Eukaryotes - 92583 (source: NCBI BLink).; Dbxref=PMID:11296221, PMID:11346655, PMID:11855639, PMID:12430019, PMID:12943546, PMID:12942173, PMID:14684837, PMID:15133126, PMID:15381434, PMID:16618929, PMID:16684236, PMID:17028323, PMID:17098742, PMID:17164256, PMID:17905899, PMID:18065561, PMID:18299247, PMID:18775970, PMID:19797057, PMID:21078981, PMID:21698461, PMID:22783269, locus:2020235; locus_type=protein_coding
AT1G04243.1	chr1:001072574	0.0	C/1072574-1072780	AT1G04243.1 lnc_RNA AT1G04243 ID=AT1G04243.1; Parent=AT1G04243; Name=AT1G04243.1; locus_type=long_noncoding_rna
AT1G04130.1	chr1:001073465	0.0	W/1073465-1073569,1073649-1073861,1073940-1074131,1074225-1074425,1074530-1074610,1074898-1075021,1075108-1075200,1075301-1075374	AT1G04130.1 CDS AT1G04130 ID=AT1G04130.1; Parent=AT1G04130; Name=AT1G04130.1; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; curator_summary=Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010%2C Pubmed ID: 20856808). Interacts with Hsp90/Hsp70 as co-chaperone.; conf_class=2; symbol=TPR2; Alias=AtTPR2; full_name=tetratricopeptide repeat 2; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B FUNCTIONS IN: binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990)%2C Tetratricopeptide repeat-containing (InterPro:IPR013026)%2C Tetratricopeptide repeat (InterPro:IPR019734)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G56440.1)%3B Has 5277 Blast hits to 4657 proteins in 398 species: Archae - 14%3B Bacteria - 308%3B Metazoa - 2191%3B Fungi - 837%3B Plants - 950%3B Viruses - 0%3B Other Eukaryotes - 977 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:20856808, locus:2020225; locus_type=protein_coding
AT1G04130.2	chr1:001073835	0.0	W/1073835-1073861,1073940-1074131,1074225-1074425,1074530-1074610,1074898-1075021,1075108-1075200,1075301-1075374	AT1G04130.2 CDS AT1G04130 ID=AT1G04130.2; Parent=AT1G04130; Name=AT1G04130.2; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; symbol=TPR2; Alias=AtTPR2; full_name=tetratricopeptide repeat 2; curator_summary=Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010%2C Pubmed ID: 20856808). Interacts with Hsp90/Hsp70 as co-chaperone.; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B FUNCTIONS IN: binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990)%2C Tetratricopeptide repeat-containing (InterPro:IPR013026)%2C Tetratricopeptide repeat (InterPro:IPR019734)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G56440.1)%3B Has 5277 Blast hits to 4657 proteins in 398 species: Archae - 14%3B Bacteria - 308%3B Metazoa - 2191%3B Fungi - 837%3B Plants - 950%3B Viruses - 0%3B Other Eukaryotes - 977 (source: NCBI BLink).; Dbxref=PMID:20856808, locus:2020225; locus_type=protein_coding
AT1G04140.1	chr1:001075984	0.0	C/1075984-1076010,1076136-1076225,1076311-1076424,1076566-1076679,1076872-1076932,1077036-1077236,1077341-1078353,1078427-1078552,1078682-1078749,1078838-1078946,1079246-1079330,1079410-1079526,1079621-1079779,1080233-1080321	AT1G04140.1 CDS AT1G04140 ID=AT1G04140.1; Parent=AT1G04140; Name=AT1G04140.1; Note=Transducin family protein / WD-40 repeat family protein; conf_class=2; computational_description=Transducin family protein / WD-40 repeat family protein%3B FUNCTIONS IN: nucleotide binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782)%2C WD40 repeat-like-containing domain (InterPro:IPR011046)%2C WD40 repeat%2C conserved site (InterPro:IPR019775)%2C WD40-repeat-containing domain (InterPro:IPR017986)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C WD40 repeat (InterPro:IPR001680)%2C WD40 repeat%2C subgroup (InterPro:IPR019781)%3B BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT5G43930.3)%3B Has 24573 Blast hits to 11855 proteins in 489 species: Archae - 64%3B Bacteria - 6146%3B Metazoa - 7827%3B Fungi - 5629%3B Plants - 2084%3B Viruses - 0%3B Other Eukaryotes - 2823 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12805584, PMID:14576160, PMID:15494554, PMID:18223036, PMID:18775970, locus:2020285; locus_type=protein_coding
AT1G04140.2	chr1:001075992	0.0	C/1075992-1076010,1076119-1076225,1076311-1076424,1076566-1076679,1076872-1076932,1077036-1077236,1077341-1078353,1078427-1078552,1078682-1078749,1078838-1078946,1079246-1079330,1079410-1079526,1079621-1079779,1080233-1080321	AT1G04140.2 CDS AT1G04140 ID=AT1G04140.2; Parent=AT1G04140; Name=AT1G04140.2; Note=Transducin family protein / WD-40 repeat family protein; conf_class=2; computational_description=Transducin family protein / WD-40 repeat family protein%3B FUNCTIONS IN: nucleotide binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782)%2C WD40 repeat-like-containing domain (InterPro:IPR011046)%2C WD40 repeat%2C conserved site (InterPro:IPR019775)%2C WD40-repeat-containing domain (InterPro:IPR017986)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C WD40 repeat (InterPro:IPR001680)%2C WD40 repeat%2C subgroup (InterPro:IPR019781)%3B BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT5G43930.3)%3B Has 24573 Blast hits to 11855 proteins in 489 species: Archae - 64%3B Bacteria - 6146%3B Metazoa - 7827%3B Fungi - 5629%3B Plants - 2084%3B Viruses - 0%3B Other Eukaryotes - 2823 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12805584, PMID:14576160, PMID:15494554, PMID:18223036, PMID:18775970, locus:2020285; locus_type=protein_coding
AT1G04150.1	chr1:001081208	0.0	C/1081208-1084246	AT1G04150.1 CDS AT1G04150 ID=AT1G04150.1; Parent=AT1G04150; Name=AT1G04150.1; Note=C2 calcium/lipid-binding plant phosphoribosyltransferase family protein; conf_class=4; computational_description=C2 calcium/lipid-binding plant phosphoribosyltransferase family protein%3B CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029)%2C C2 calcium/lipid-binding domain%2C CaLB (InterPro:IPR008973)%2C Phosphoribosyltransferase C-terminal (InterPro:IPR013583)%2C C2 calcium-dependent membrane targeting (InterPro:IPR000008)%3B BEST Arabidopsis thaliana protein match is: C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (TAIR:AT4G11610.1)%3B Has 3504 Blast hits to 2915 proteins in 204 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 2158%3B Fungi - 82%3B Plants - 979%3B Viruses - 2%3B Other Eukaryotes - 281 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:17551672, PMID:18775970, PMID:19291320, PMID:20736450, locus:2020280; locus_type=protein_coding
AT1G04160.1	chr1:001086495	0.0	W/1086495-1086497,1087114-1087242,1087370-1087513,1087657-1087802,1087890-1088049,1088251-1088309,1088411-1088570,1088664-1088813,1088895-1089031,1089121-1089267,1089393-1089494,1089912-1089969,1090061-1090162,1090406-1090443,1090567-1090693,1090815-1090982,1091074-1091205,1091304-1091413,1091502-1091562,1091656-1091833,1091926-1092131,1092302-1092421,1092572-1092670,1092776-1092988,1093109-1093248,1093336-1093450,1093541-1093585,1093692-1093742,1093825-1093995,1094312-1094464,1094551-1094742,1094901-1095029,1095107-1095177,1095347-1095443,1095518-1095574,1095665-1095721,1095804-1095967,1096035-1096146	AT1G04160.1 CDS AT1G04160 ID=AT1G04160.1; Parent=AT1G04160; Name=AT1G04160.1; Note=myosin XI B; curator_summary=Encodes a member of the type XI myosin protein family involved in root hair elongation.; conf_class=2; symbol=XIB; Alias=ATXIB, ARABIDOPSIS THALIANA MYOSIN XI B, XI-8, MYOSIN XI-8, XI-B, MYOSIN XI B; full_name=myosin XI B; computational_description=myosin XI B (XIB)%3B FUNCTIONS IN: motor activity%3B INVOLVED IN: root hair elongation%2C actin filament-based movement%3B LOCATED IN: myosin complex%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 10 growth stages%3B CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444)%2C Dilute (InterPro:IPR002710)%2C Myosin%2C N-terminal%2C SH3-like (InterPro:IPR004009)%2C Myosin head%2C motor domain (InterPro:IPR001609)%2C IQ calmodulin-binding region (InterPro:IPR000048)%3B BEST Arabidopsis thaliana protein match is: myosin 2 (TAIR:AT5G43900.3)%3B Has 26358 Blast hits to 18103 proteins in 1674 species: Archae - 321%3B Bacteria - 2193%3B Metazoa - 15182%3B Fungi - 1812%3B Plants - 1278%3B Viruses - 89%3B Other Eukaryotes - 5483 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11516337, PMID:15792961, PMID:17288617, PMID:17551672, PMID:18178669, PMID:18598361, PMID:18775970, PMID:19060218, PMID:19369591, PMID:20581304, PMID:20736450, locus:2020270; locus_type=protein_coding
AT1G04160.2	chr1:001086495	0.0	W/1086495-1086497,1087114-1087242,1087370-1087513,1087657-1087802,1087890-1088049,1088251-1088309,1088411-1088570,1088664-1088813,1088895-1089031,1089121-1089267,1089393-1089494,1089912-1089969,1090061-1090162,1090406-1090443,1090567-1090693,1090815-1090982,1091074-1091205,1091304-1091413,1091502-1091562,1091656-1091833,1091926-1092131,1092302-1092421,1092572-1092670,1092776-1092988,1093109-1093248,1093336-1093450,1093541-1093585,1093692-1093742,1093825-1093995,1094312-1094464,1094551-1094742,1094901-1095029,1095107-1095177,1095347-1095443,1095518-1095595	AT1G04160.2 CDS AT1G04160 ID=AT1G04160.2; Parent=AT1G04160; Name=AT1G04160.2; Note=myosin XI B; symbol=XIB; Alias=ATXIB, ARABIDOPSIS THALIANA MYOSIN XI B, XI-8, MYOSIN XI-8, XI-B, MYOSIN XI B; full_name=myosin XI B; curator_summary=Encodes a member of the type XI myosin protein family involved in root hair elongation.; computational_description=myosin XI B (XIB)%3B FUNCTIONS IN: motor activity%3B INVOLVED IN: root hair elongation%2C actin filament-based movement%3B LOCATED IN: myosin complex%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 10 growth stages%3B CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444)%2C Dilute (InterPro:IPR002710)%2C Myosin%2C N-terminal%2C SH3-like (InterPro:IPR004009)%2C Myosin head%2C motor domain (InterPro:IPR001609)%2C IQ calmodulin-binding region (InterPro:IPR000048)%3B BEST Arabidopsis thaliana protein match is: myosin 2 (TAIR:AT5G43900.3)%3B Has 26358 Blast hits to 18103 proteins in 1674 species: Archae - 321%3B Bacteria - 2193%3B Metazoa - 15182%3B Fungi - 1812%3B Plants - 1278%3B Viruses - 89%3B Other Eukaryotes - 5483 (source: NCBI BLink).; Dbxref=PMID:11516337, PMID:15792961, PMID:17288617, PMID:17551672, PMID:18178669, PMID:18598361, PMID:18775970, PMID:19060218, PMID:19369591, PMID:20581304, PMID:20736450, locus:2020270; locus_type=protein_coding
AT1G04170.1	chr1:001097423	0.0	W/1097423-1097531,1097619-1097680,1097800-1097912,1097999-1098101,1098379-1098606,1098718-1098936,1099037-1099297,1099400-1099702	AT1G04170.1 CDS AT1G04170 ID=AT1G04170.1; Parent=AT1G04170; Name=AT1G04170.1; Note=eukaryotic translation initiation factor 2 gamma subunit; curator_summary=protein synthesis initiation factor eIF2 gamma; conf_class=2; symbol=EIF2 GAMMA; full_name=eukaryotic translation initiation factor 2 gamma subunit; computational_description=eukaryotic translation initiation factor 2 gamma subunit (EIF2 GAMMA)%3B CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A%2C domain 2 (InterPro:IPR004161)%2C Initiation factor eIF2 gamma%2C C-terminal (InterPro:IPR015256)%2C Translation elongation factor EF1A/initiation factor IF2gamma%2C C-terminal (InterPro:IPR009001)%2C Protein synthesis factor%2C GTP-binding (InterPro:IPR000795)%2C Translation elongation/initiation factor/Ribosomal%2C beta-barrel (InterPro:IPR009000)%3B BEST Arabidopsis thaliana protein match is: Translation elongation factor EF1A/initiation factor IF2gamma family protein (TAIR:AT4G18330.2)%3B Has 29259 Blast hits to 29225 proteins in 6532 species: Archae - 651%3B Bacteria - 17093%3B Metazoa - 4832%3B Fungi - 574%3B Plants - 965%3B Viruses - 0%3B Other Eukaryotes - 5144 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17597079, locus:2020260; locus_type=protein_coding
AT1G04170.2	chr1:001097423	0.0	W/1097423-1097531,1097619-1097680,1097800-1097912,1097999-1098101,1098379-1098606,1098718-1098936,1099037-1099297,1099400-1099702	AT1G04170.2 CDS AT1G04170 ID=AT1G04170.2; Parent=AT1G04170; Name=AT1G04170.2; Note=eukaryotic translation initiation factor 2 gamma subunit; symbol=EIF2 GAMMA; full_name=eukaryotic translation initiation factor 2 gamma subunit; Dbxref=PMID:17597079, locus:2020260; curator_summary=protein synthesis initiation factor eIF2 gamma; computational_description=eukaryotic translation initiation factor 2 gamma subunit (EIF2 GAMMA)%3B CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A%2C domain 2 (InterPro:IPR004161)%2C Initiation factor eIF2 gamma%2C C-terminal (InterPro:IPR015256)%2C Translation elongation factor EF1A/initiation factor IF2gamma%2C C-terminal (InterPro:IPR009001)%2C Protein synthesis factor%2C GTP-binding (InterPro:IPR000795)%2C Translation elongation/initiation factor/Ribosomal%2C beta-barrel (InterPro:IPR009000)%3B BEST Arabidopsis thaliana protein match is: Translation elongation factor EF1A/initiation factor IF2gamma family protein (TAIR:AT4G18330.2)%3B Has 29259 Blast hits to 29225 proteins in 6532 species: Archae - 651%3B Bacteria - 17093%3B Metazoa - 4832%3B Fungi - 574%3B Plants - 965%3B Viruses - 0%3B Other Eukaryotes - 5144 (source: NCBI BLink).; locus_type=protein_coding
AT1G04180.1	chr1:001104623	0.0	W/1104623-1105288,1105389-1105988	AT1G04180.1 CDS AT1G04180 ID=AT1G04180.1; Parent=AT1G04180; Name=AT1G04180.1; Note=YUCCA 9; conf_class=2; symbol=YUC9; full_name=YUCCA 9; computational_description=YUCCA 9 (YUC9)%3B FUNCTIONS IN: NADP or NADPH binding%2C oxidoreductase activity%2C monooxygenase activity%2C FAD binding%2C flavin-containing monooxygenase activity%3B INVOLVED IN: oxidation reduction%3B EXPRESSED IN: root%3B CONTAINS InterPro DOMAIN/s: Pyridine nucleotide-disulphide oxidoreductase%2C class-II (InterPro:IPR000103)%2C FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027)%2C Flavin-containing monooxygenase-like (InterPro:IPR020946)%3B BEST Arabidopsis thaliana protein match is: Flavin-binding monooxygenase family protein (TAIR:AT5G43890.1)%3B Has 11871 Blast hits to 11852 proteins in 1762 species: Archae - 17%3B Bacteria - 7034%3B Metazoa - 796%3B Fungi - 1508%3B Plants - 659%3B Viruses - 0%3B Other Eukaryotes - 1857 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16126863, PMID:19995721, PMID:23209113, PMID:23425284, PMID:24022251, locus:2020250; locus_type=protein_coding
AT1G04190.1	chr1:001106617	0.0	C/1106617-1106692,1106857-1106990,1107070-1107189,1107268-1107447,1107556-1107729,1107820-1107870,1107985-1108078,1108400-1108557	AT1G04190.1 CDS AT1G04190 ID=AT1G04190.1; Parent=AT1G04190; Name=AT1G04190.1; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; curator_summary=Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010%2C Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.; conf_class=2; symbol=TPR3; full_name=tetratricopeptide repeat 3; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B FUNCTIONS IN: binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440)%2C Tetratricopeptide-like helical (InterPro:IPR011990)%2C Tetratricopeptide repeat-containing (InterPro:IPR013026)%2C Tetratricopeptide repeat (InterPro:IPR019734)%3B BEST Arabidopsis thaliana protein match is: stress-inducible protein%2C putative (TAIR:AT1G62740.1)%3B Has 20389 Blast hits to 12924 proteins in 1156 species: Archae - 970%3B Bacteria - 7001%3B Metazoa - 4309%3B Fungi - 1260%3B Plants - 1634%3B Viruses - 0%3B Other Eukaryotes - 5215 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17551672, PMID:20856808, locus:2020240; locus_type=protein_coding
AT1G04200.1	chr1:001109676	0.0	W/1109676-1109865,1109984-1110223,1110300-1110363,1110457-1110586,1110678-1110819,1110983-1111228,1111305-1111392,1111523-1111625,1111791-1111919,1112001-1112114,1112291-1112409,1112500-1112590,1112689-1112781,1112861-1112950,1113072-1113191,1113301-1113392,1113507-1113564,1113786-1113875	AT1G04200.1 CDS AT1G04200 ID=AT1G04200.1; Parent=AT1G04200; Name=AT1G04200.1; Note=dyggve-melchior-clausen syndrome protein; conf_class=3; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: N-terminal protein myristoylation%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Dymeclin (InterPro:IPR019142)%3B Has 395 Blast hits to 389 proteins in 117 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 262%3B Fungi - 21%3B Plants - 68%3B Viruses - 0%3B Other Eukaryotes - 44 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12912986, locus:2020230; locus_type=protein_coding
AT1G04200.2	chr1:001109676	0.0	W/1109676-1109865,1109984-1110223,1110300-1110363,1110457-1110586,1110678-1110819,1110983-1111228,1111305-1111392,1111523-1111625,1111791-1111919,1112001-1112114,1112291-1112409,1112500-1112590,1112689-1112781,1112861-1113004	AT1G04200.2 CDS AT1G04200 ID=AT1G04200.2; Parent=AT1G04200; Name=AT1G04200.2; Note=dyggve-melchior-clausen syndrome protein; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: N-terminal protein myristoylation%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Dymeclin (InterPro:IPR019142)%3B Has 395 Blast hits to 389 proteins in 117 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 262%3B Fungi - 21%3B Plants - 68%3B Viruses - 0%3B Other Eukaryotes - 44 (source: NCBI BLink).; Dbxref=PMID:12912986, locus:2020230; locus_type=protein_coding
AT1G04200.3	chr1:001109676	0.0	W/1109676-1109865,1109984-1110223,1110300-1110363,1110457-1110586,1110678-1110819,1110983-1111228,1111305-1111392,1111523-1111625,1111791-1111919,1112001-1112114,1112291-1112409,1112500-1112590,1112689-1112781,1112861-1112950,1113072-1113191,1113301-1113392,1113507-1113576	AT1G04200.3 CDS AT1G04200 ID=AT1G04200.3; Parent=AT1G04200; Name=AT1G04200.3; Note=dyggve-melchior-clausen syndrome protein; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: N-terminal protein myristoylation%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Dymeclin (InterPro:IPR019142)%3B Has 395 Blast hits to 389 proteins in 117 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 262%3B Fungi - 21%3B Plants - 68%3B Viruses - 0%3B Other Eukaryotes - 44 (source: NCBI BLink).; Dbxref=PMID:12912986, locus:2020230; locus_type=protein_coding
AT1G04210.1	chr1:001114696	0.0	W/1114696-1115192,1115557-1115821,1115938-1116100,1116226-1116961,1117053-1117482,1117575-1117756,1117989-1118145,1118223-1118447,1118531-1118881,1118968-1119069,1119153-1119383	AT1G04210.1 CDS AT1G04210 ID=AT1G04210.1; Parent=AT1G04210; Name=AT1G04210.1; Note=Leucine-rich repeat protein kinase family protein; curator_summary=Encodes a putative Raf-related kinase.; conf_class=1; computational_description=Leucine-rich repeat protein kinase family protein%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Leucine-rich repeat (InterPro:IPR001611)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT4G31170.3)%3B Has 130301 Blast hits to 104916 proteins in 2869 species: Archae - 120%3B Bacteria - 15185%3B Metazoa - 50195%3B Fungi - 9983%3B Plants - 37286%3B Viruses - 367%3B Other Eukaryotes - 17165 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12169696, PMID:12535337, PMID:12972053, PMID:17551672, PMID:21477822, locus:2020220; locus_type=protein_coding
AT1G04220.1	chr1:001119853	0.0	C/1119853-1120671,1121716-1122483	AT1G04220.1 CDS AT1G04220 ID=AT1G04220.1; Parent=AT1G04220; Name=AT1G04220.1; Note=3-ketoacyl-CoA synthase 2; curator_summary=Encodes KCS2%2C a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).; conf_class=2; symbol=KCS2; full_name=3-ketoacyl-CoA synthase 2; computational_description=3-ketoacyl-CoA synthase 2 (KCS2)%3B FUNCTIONS IN: fatty acid elongase activity%3B INVOLVED IN: response to wounding%2C response to osmotic stress%2C suberin biosynthetic process%3B LOCATED IN: membrane%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039)%2C Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392)%2C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747)%2C FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601)%2C Thiolase-like%2C subgroup (InterPro:IPR016038)%3B BEST Arabidopsis thaliana protein match is: 3-ketoacyl-CoA synthase 20 (TAIR:AT5G43760.1)%3B Has 5259 Blast hits to 5241 proteins in 1449 species: Archae - 0%3B Bacteria - 2406%3B Metazoa - 0%3B Fungi - 4%3B Plants - 2679%3B Viruses - 0%3B Other Eukaryotes - 170 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12481097, PMID:14973164, PMID:15037448, PMID:15047901, PMID:15047898, PMID:16212609, PMID:16299169, PMID:16449229, PMID:16765910, PMID:17551672, PMID:17662035, PMID:18465198, PMID:18786002, PMID:19619160, PMID:20736450, PMID:22284369, PMID:23505340, PMID:24361507, PMID:25305760, locus:2020215; locus_type=protein_coding
AT1G04247.1	chr1:001120225	0.0	W/1120225-1122526	AT1G04247.1 antisense_lncRNA AT1G04247 ID=AT1G04247.1; Parent=AT1G04247; Name=AT1G04247.1; description=Natural antisense transcript overlaps with AT1G04220; Note=Natural antisense transcript overlaps with AT1G04220; locus_type=antisense_long_noncoding_rna
AT1G04230.1	chr1:001125576	0.0	W/1125576-1125728,1125995-1126124,1126233-1126363,1126535-1126673,1126848-1126962,1127193-1127256,1127434-1127673,1127823-1127828	AT1G04230.1 CDS AT1G04230 ID=AT1G04230.1; Parent=AT1G04230; Name=AT1G04230.1; Note=rRNA-processing EFG1-like protein (DUF2361); conf_class=2; computational_description=Protein of unknown function (DUF2361)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2361 (InterPro:IPR019310)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF2361) (TAIR:AT5G43720.1)%3B Has 1174 Blast hits to 818 proteins in 194 species: Archae - 0%3B Bacteria - 26%3B Metazoa - 566%3B Fungi - 310%3B Plants - 87%3B Viruses - 6%3B Other Eukaryotes - 179 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, locus:2018284; locus_type=protein_coding
AT1G04230.2	chr1:001125576	0.0	W/1125576-1125728,1125995-1126124,1126233-1126363,1126535-1126673,1126848-1126962,1127193-1127256,1127437-1127673,1127823-1127828	AT1G04230.2 CDS AT1G04230 ID=AT1G04230.2; Parent=AT1G04230; Name=AT1G04230.2; Note=rRNA-processing EFG1-like protein (DUF2361); computational_description=Protein of unknown function (DUF2361)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2361 (InterPro:IPR019310)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF2361) (TAIR:AT5G43720.1)%3B Has 1174 Blast hits to 818 proteins in 194 species: Archae - 0%3B Bacteria - 26%3B Metazoa - 566%3B Fungi - 310%3B Plants - 87%3B Viruses - 6%3B Other Eukaryotes - 179 (source: NCBI BLink).; Dbxref=PMID:18775970, locus:2018284; locus_type=protein_coding
AT1G04240.1	chr1:001128564	0.0	C/1128564-1128639,1128744-1129052,1129135-1129319	AT1G04240.1 CDS AT1G04240 ID=AT1G04240.1; Parent=AT1G04240; Name=AT1G04240.1; Note=AUX/IAA transcriptional regulator family protein; curator_summary=SHY2/IAA3 regulates multiple auxin responses in roots. It is induced rapidly by IAA%2C and has been shown to be phosphorylated by oat phytochrome A in vitro.; conf_class=2; symbol=SHY2; Alias=IAA3, indole-3-acetic acid inducible 3; full_name=SHORT HYPOCOTYL 2; computational_description=SHORT HYPOCOTYL 2 (SHY2)%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: response to auxin stimulus%2C response to cyclopentenone%2C response to brassinosteroid stimulus%3B LOCATED IN: nucleus%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525)%2C AUX/IAA protein (InterPro:IPR003311)%3B BEST Arabidopsis thaliana protein match is: AUX/IAA transcriptional regulator family protein (TAIR:AT5G43700.1)%3B Has 1823 Blast hits to 1821 proteins in 83 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1822%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9895319, PMID:9744095, PMID:8624510, PMID:11118137, PMID:11115889, PMID:11884676, PMID:11283339, PMID:12096821, PMID:16367964, PMID:16489122, PMID:17369427, PMID:18334669, PMID:18650403, PMID:19039136, PMID:19309453, PMID:15889151, PMID:20080602, PMID:20605455, PMID:21119060, PMID:21149702, PMID:21252300, PMID:21640126, PMID:22016421, PMID:22081402, PMID:22527388, PMID:22479194, PMID:22619471, PMID:22995285, PMID:23296689, PMID:23425316, PMID:23518585, PMID:23629833, PMID:23715527, PMID:24035544, PMID:24482432, PMID:24479837, PMID:24596172, PMID:25358093, locus:2018379; locus_type=protein_coding
AT1G04240.2	chr1:001128564	0.0	C/1128564-1128639,1128744-1129052,1129135-1129619	AT1G04240.2 CDS AT1G04240 ID=AT1G04240.2; Parent=AT1G04240; Name=AT1G04240.2; Note=AUX/IAA transcriptional regulator family protein; symbol=SHY2; Alias=IAA3, indole-3-acetic acid inducible 3; full_name=SHORT HYPOCOTYL 2; curator_summary=SHY2/IAA3 regulates multiple auxin responses in roots. It is induced rapidly by IAA%2C and has been shown to be phosphorylated by oat phytochrome A in vitro.; computational_description=SHORT HYPOCOTYL 2 (SHY2)%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: response to auxin stimulus%2C response to cyclopentenone%2C response to brassinosteroid stimulus%3B LOCATED IN: nucleus%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525)%2C AUX/IAA protein (InterPro:IPR003311)%3B BEST Arabidopsis thaliana protein match is: AUX/IAA transcriptional regulator family protein (TAIR:AT5G43700.1)%3B Has 1823 Blast hits to 1821 proteins in 83 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1822%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; Dbxref=PMID:9895319, PMID:9744095, PMID:8624510, PMID:11118137, PMID:11115889, PMID:11884676, PMID:11283339, PMID:12096821, PMID:16367964, PMID:16489122, PMID:17369427, PMID:18334669, PMID:18650403, PMID:19039136, PMID:19309453, PMID:15889151, PMID:20080602, PMID:20605455, PMID:21119060, PMID:21149702, PMID:21252300, PMID:21640126, PMID:22016421, PMID:22081402, PMID:22527388, PMID:22479194, PMID:22619471, PMID:22995285, PMID:23296689, PMID:23425316, PMID:23518585, PMID:23629833, PMID:23715527, PMID:24035544, PMID:24482432, PMID:24479837, PMID:24596172, PMID:25358093, locus:2018379; locus_type=protein_coding
AT1G04253.1	chr1:001134308	0.0	C/1134308-1134997	AT1G04253.1 lnc_RNA AT1G04253 ID=AT1G04253.1; Parent=AT1G04253; Name=AT1G04253.1; locus_type=long_noncoding_rna
AT1G04250.1	chr1:001136382	0.0	W/1136382-1136620,1136934-1137145,1137460-1137598,1137740-1137801,1138303-1138340	AT1G04250.1 CDS AT1G04250 ID=AT1G04250.1; Parent=AT1G04250; Name=AT1G04250.1; Note=AUX/IAA transcriptional regulator family protein; curator_summary=Transcription regulator acting as repressor of auxin-inducible gene expression. Auxin-inducible AUX/IAA gene. Short-lived nuclear protein with four conserved domains. Domain III has homology to beta alpha alpha dimerization and DNA binding domains. Involved in auxin signaling and is a positive modulator of natural leaf senescence. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF%2C CSN and 26S proteasome components.; conf_class=2; symbol=AXR3; Alias=AtIAA17, IAA17, indole-3-acetic acid inducible 17; full_name=AUXIN RESISTANT 3; computational_description=AUXIN RESISTANT 3 (AXR3)%3B CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525)%2C AUX/IAA protein (InterPro:IPR003311)%3B BEST Arabidopsis thaliana protein match is: indole-3-acetic acid inducible 14 (TAIR:AT4G14550.1)%3B Has 1763 Blast hits to 1762 proteins in 78 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1762%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10758506, PMID:9478901, PMID:8811856, PMID:11027706, PMID:11118137, PMID:11115889, PMID:11713520, PMID:11283339, PMID:12036262, PMID:12368267, PMID:14534134, PMID:14617065, PMID:15073219, PMID:15994909, PMID:16244669, PMID:16284307, PMID:16367964, PMID:16489122, PMID:16452072, PMID:16751346, PMID:17430601, PMID:17559514, PMID:17919906, PMID:18650403, PMID:19106375, PMID:19129421, PMID:19223973, PMID:16636440, PMID:19825556, PMID:20040060, PMID:20016781, PMID:20543136, PMID:20669021, PMID:20739302, PMID:20736450, PMID:21105922, PMID:21252300, PMID:21543900, PMID:22311777, PMID:22619471, PMID:22580954, PMID:22912871, PMID:22995285, PMID:23041192, PMID:23763631, PMID:23939433, PMID:24056047, PMID:24479837, PMID:24706860, PMID:25324183, locus:2018374; locus_type=protein_coding
AT1G04260.1	chr1:001140749	0.0	C/1140749-1141297	AT1G04260.1 CDS AT1G04260 ID=AT1G04260.1; Parent=AT1G04260; Name=AT1G04260.1; Note=CAMV movement protein interacting protein 7; curator_summary=Encodes protein that interacts with CaMV movement protein. Colocalizes in the cytoplasm with the movement protein. Has similarity to mammalian proteins (such as the rat PRA1) which have been described as rab acceptors.; conf_class=1; symbol=MPI7; Alias=MPIP7, CAMV MOVEMENT PROTEIN INTERACTING PROTEIN 7, PRA1.D, PRENYLATED RAB ACCEPTOR 1.D; full_name=CAMV movement protein interacting protein 7; computational_description=CAMV movement protein interacting protein 7 (MPI7)%3B FUNCTIONS IN: protein binding%3B INVOLVED IN: vesicle-mediated transport%2C spread of virus in host%3B LOCATED IN: endoplasmic reticulum%2C cytoplasm%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895)%3B BEST Arabidopsis thaliana protein match is: prenylated RAB acceptor 1.E (TAIR:AT1G08770.1)%3B Has 616 Blast hits to 616 proteins in 144 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 121%3B Fungi - 81%3B Plants - 374%3B Viruses - 0%3B Other Eukaryotes - 40 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12535341, PMID:11725951, PMID:18583532, PMID:18650403, locus:2018359; locus_type=protein_coding
AT1G04270.1	chr1:001141852	0.0	C/1141852-1142100,1142576-1142633,1142721-1142869,1142958-1142960	AT1G04270.1 CDS AT1G04270 ID=AT1G04270.1; Parent=AT1G04270; Name=AT1G04270.1; Note=cytosolic ribosomal protein S15; curator_summary=Encodes cytosolic ribosomal protein S15.; conf_class=2; symbol=RPS15; full_name=cytosolic ribosomal protein S15; computational_description=cytosolic ribosomal protein S15 (RPS15)%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%3B LOCATED IN: cytosolic small ribosomal subunit%2C cytosolic ribosome%2C plasma membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein S15%2C eukaryotic/archaeal (InterPro:IPR005713)%2C Ribosomal protein S19/S15 (InterPro:IPR002222)%2C Ribosomal protein S19 conserved site (InterPro:IPR020934)%3B BEST Arabidopsis thaliana protein match is: Ribosomal protein S19 family protein (TAIR:AT5G09510.1)%3B Has 8033 Blast hits to 8033 proteins in 2978 species: Archae - 257%3B Bacteria - 3802%3B Metazoa - 279%3B Fungi - 238%3B Plants - 1557%3B Viruses - 0%3B Other Eukaryotes - 1900 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9040780, PMID:7916644, PMID:11598216, PMID:15821981, PMID:16776300, PMID:17333279, PMID:17934214, PMID:18971337, PMID:20118269, PMID:21814791, PMID:22195043, locus:2018324; locus_type=protein_coding
AT1G04270.2	chr1:001141852	0.0	C/1141852-1142100,1142579-1142633,1142721-1142869,1142958-1142960	AT1G04270.2 CDS AT1G04270 ID=AT1G04270.2; Parent=AT1G04270; Name=AT1G04270.2; Note=cytosolic ribosomal protein S15; curator_summary=Encodes cytosolic ribosomal protein S15.; conf_class=2; symbol=RPS15; full_name=cytosolic ribosomal protein S15; computational_description=cytosolic ribosomal protein S15 (RPS15)%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%3B LOCATED IN: cytosolic small ribosomal subunit%2C cytosolic ribosome%2C plasma membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein S15%2C eukaryotic/archaeal (InterPro:IPR005713)%2C Ribosomal protein S19/S15 (InterPro:IPR002222)%2C Ribosomal protein S19 conserved site (InterPro:IPR020934)%3B BEST Arabidopsis thaliana protein match is: Ribosomal protein S19 family protein (TAIR:AT5G09510.1)%3B Has 8033 Blast hits to 8033 proteins in 2978 species: Archae - 257%3B Bacteria - 3802%3B Metazoa - 279%3B Fungi - 238%3B Plants - 1557%3B Viruses - 0%3B Other Eukaryotes - 1900 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9040780, PMID:7916644, PMID:11598216, PMID:15821981, PMID:16776300, PMID:17333279, PMID:17934214, PMID:18971337, PMID:20118269, PMID:21814791, PMID:22195043, locus:2018324; locus_type=protein_coding
AT1G04280.1	chr1:001143643	0.0	C/1143643-1143888,1143980-1144124,1144234-1144556,1144655-1144784,1144876-1145094,1145295-1145359,1145497-1145720,1146141-1146374,1146523-1146541	AT1G04280.1 CDS AT1G04280 ID=AT1G04280.1; Parent=AT1G04280; Name=AT1G04280.1; Note=P-loop containing nucleoside triphosphate hydrolases superfamily protein; conf_class=2; computational_description=P-loop containing nucleoside triphosphate hydrolases superfamily protein%3B FUNCTIONS IN: ATP binding%3B INVOLVED IN: cell killing%3B LOCATED IN: membrane%3B EXPRESSED IN: leaf%3B CONTAINS InterPro DOMAIN/s: Zeta toxin (InterPro:IPR010488)%3B BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G06750.2)%3B Has 195 Blast hits to 194 proteins in 47 species: Archae - 0%3B Bacteria - 42%3B Metazoa - 0%3B Fungi - 0%3B Plants - 130%3B Viruses - 3%3B Other Eukaryotes - 20 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15280248, PMID:20736450, locus:2018304; locus_type=protein_coding
AT1G04280.2	chr1:001143643	0.0	C/1143643-1143888,1143980-1144124,1144234-1144556,1144655-1144784,1144876-1145094,1145295-1145359,1145497-1145720,1146141-1146231	AT1G04280.2 CDS AT1G04280 ID=AT1G04280.2; Parent=AT1G04280; Name=AT1G04280.2; Note=P-loop containing nucleoside triphosphate hydrolases superfamily protein; computational_description=P-loop containing nucleoside triphosphate hydrolases superfamily protein%3B FUNCTIONS IN: ATP binding%3B INVOLVED IN: cell killing%3B LOCATED IN: membrane%3B EXPRESSED IN: leaf%3B CONTAINS InterPro DOMAIN/s: Zeta toxin (InterPro:IPR010488)%3B BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G06750.2)%3B Has 195 Blast hits to 194 proteins in 47 species: Archae - 0%3B Bacteria - 42%3B Metazoa - 0%3B Fungi - 0%3B Plants - 130%3B Viruses - 3%3B Other Eukaryotes - 20 (source: NCBI BLink).; Dbxref=PMID:15280248, PMID:20736450, locus:2018304; locus_type=protein_coding
AT1G04290.1	chr1:001147721	0.0	C/1147721-1147864,1147948-1148091,1148173-1148352	AT1G04290.1 CDS AT1G04290 ID=AT1G04290.1; Parent=AT1G04290; Name=AT1G04290.1; Note=Thioesterase superfamily protein; conf_class=4; computational_description=Thioesterase superfamily protein%3B FUNCTIONS IN: hydrolase activity%2C acting on ester bonds%2C acyl-CoA thioesterase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: peroxisome%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Thioesterase superfamily (InterPro:IPR006683)%2C Phenylacetic acid degradation-related protein (InterPro:IPR003736)%3B BEST Arabidopsis thaliana protein match is: Thioesterase superfamily protein (TAIR:AT2G29590.1)%3B Has 964 Blast hits to 962 proteins in 292 species: Archae - 38%3B Bacteria - 286%3B Metazoa - 202%3B Fungi - 157%3B Plants - 213%3B Viruses - 0%3B Other Eukaryotes - 68 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:15333753, PMID:15965014, PMID:17951448, PMID:18775970, PMID:18931141, PMID:20736450, locus:2018294; locus_type=protein_coding
AT1G04295.1	chr1:001147781	0.0	W/1147781-1148435	AT1G04295.1 antisense_lncRNA AT1G04295 ID=AT1G04295.1; Parent=AT1G04295; index=1; curator_summary=Potential natural antisense gene%2C locus overlaps with AT1G04290; Dbxref=locus:4010713410; Name=AT1G04295.1; nochangenat-description=Natural antisense transcript overlaps with AT1G04290; Note=Natural antisense transcript overlaps with AT1G04290; locus_type=antisense_long_noncoding_rna
AT1G04290.2	chr1:001147888	0.0	C/1147888-1148091,1148173-1148352	AT1G04290.2 CDS AT1G04290 ID=AT1G04290.2; Parent=AT1G04290; Name=AT1G04290.2; Note=Thioesterase superfamily protein; computational_description=Thioesterase superfamily protein%3B FUNCTIONS IN: hydrolase activity%2C acting on ester bonds%2C acyl-CoA thioesterase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: peroxisome%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Thioesterase superfamily (InterPro:IPR006683)%2C Phenylacetic acid degradation-related protein (InterPro:IPR003736)%3B BEST Arabidopsis thaliana protein match is: Thioesterase superfamily protein (TAIR:AT2G29590.1)%3B Has 964 Blast hits to 962 proteins in 292 species: Archae - 38%3B Bacteria - 286%3B Metazoa - 202%3B Fungi - 157%3B Plants - 213%3B Viruses - 0%3B Other Eukaryotes - 68 (source: NCBI BLink).; Dbxref=PMID:15333753, PMID:15965014, PMID:17951448, PMID:18775970, PMID:18931141, PMID:20736450, locus:2018294; locus_type=protein_coding
AT1G04300.1	chr1:001148818	0.0	C/1148818-1149996,1150118-1150319,1150392-1150882,1150968-1151118,1151212-1151324,1151503-1151851,1152317-1152475,1152677-1152809,1152879-1152947,1153036-1153124,1153234-1153345,1153718-1153895	AT1G04300.1 CDS AT1G04300 ID=AT1G04300.1; Parent=AT1G04300; Name=AT1G04300.1; Note=TRAF-like superfamily protein; conf_class=2; computational_description=TRAF-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974)%2C MATH (InterPro:IPR002083)%2C TRAF-type (InterPro:IPR013322)%3B BEST Arabidopsis thaliana protein match is: TRAF-like superfamily protein (TAIR:AT5G43560.2)%3B Has 16577 Blast hits to 11240 proteins in 949 species: Archae - 20%3B Bacteria - 1945%3B Metazoa - 5204%3B Fungi - 2178%3B Plants - 1117%3B Viruses - 112%3B Other Eukaryotes - 6001 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12169696, PMID:15010618, PMID:15280248, PMID:18650403, PMID:18775970, locus:2018279; locus_type=protein_coding
AT1G04300.2	chr1:001148818	0.0	C/1148818-1149996,1150118-1150319,1150392-1150882,1150968-1151118,1151212-1151324,1151503-1151851,1152317-1152475,1152677-1152809,1152879-1153095	AT1G04300.2 CDS AT1G04300 ID=AT1G04300.2; Parent=AT1G04300; Name=AT1G04300.2; Note=TRAF-like superfamily protein; conf_class=2; computational_description=TRAF-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974)%2C MATH (InterPro:IPR002083)%2C TRAF-type (InterPro:IPR013322)%3B BEST Arabidopsis thaliana protein match is: TRAF-like superfamily protein (TAIR:AT5G43560.2)%3B Has 16577 Blast hits to 11240 proteins in 949 species: Archae - 20%3B Bacteria - 1945%3B Metazoa - 5204%3B Fungi - 2178%3B Plants - 1117%3B Viruses - 112%3B Other Eukaryotes - 6001 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12169696, PMID:15010618, PMID:15280248, PMID:18650403, PMID:18775970, locus:2018279; locus_type=protein_coding
AT1G04300.3	chr1:001148818	0.0	C/1148818-1149996,1150118-1150319,1150392-1150882,1150968-1151118,1151212-1151324,1151503-1151851,1152317-1152475,1152677-1152809,1152879-1152971,1153036-1153124,1153234-1153345,1153718-1153895	AT1G04300.3 CDS AT1G04300 ID=AT1G04300.3; Parent=AT1G04300; Name=AT1G04300.3; Note=TRAF-like superfamily protein; conf_class=3; computational_description=TRAF-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974)%2C MATH (InterPro:IPR002083)%2C TRAF-type (InterPro:IPR013322)%3B BEST Arabidopsis thaliana protein match is: TRAF-like superfamily protein (TAIR:AT5G43560.2)%3B Has 16577 Blast hits to 11240 proteins in 949 species: Archae - 20%3B Bacteria - 1945%3B Metazoa - 5204%3B Fungi - 2178%3B Plants - 1117%3B Viruses - 112%3B Other Eukaryotes - 6001 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12169696, PMID:15010618, PMID:15280248, PMID:18650403, PMID:18775970, locus:2018279; locus_type=protein_coding
AT1G04300.4	chr1:001148818	0.0	C/1148818-1149996,1150118-1150319,1150392-1150882,1150968-1151118,1151212-1151324,1151503-1151851,1152317-1152475,1152677-1152809,1152879-1152947,1153036-1153124,1153234-1153288,1153718-1153895	AT1G04300.4 CDS AT1G04300 ID=AT1G04300.4; Parent=AT1G04300; Name=AT1G04300.4; Note=TRAF-like superfamily protein; conf_class=3; computational_description=TRAF-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974)%2C MATH (InterPro:IPR002083)%2C TRAF-type (InterPro:IPR013322)%3B BEST Arabidopsis thaliana protein match is: TRAF-like superfamily protein (TAIR:AT5G43560.2)%3B Has 16577 Blast hits to 11240 proteins in 949 species: Archae - 20%3B Bacteria - 1945%3B Metazoa - 5204%3B Fungi - 2178%3B Plants - 1117%3B Viruses - 112%3B Other Eukaryotes - 6001 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12169696, PMID:15010618, PMID:15280248, PMID:18650403, PMID:18775970, locus:2018279; locus_type=protein_coding
AT1G04300.5	chr1:001148818	0.0	C/1148818-1149996,1150118-1150319,1150392-1150882,1150968-1151118,1151212-1151324,1151503-1151851,1152317-1152475,1152677-1152809,1152879-1152947,1153036-1153324	AT1G04300.5 CDS AT1G04300 ID=AT1G04300.5; Parent=AT1G04300; Name=AT1G04300.5; Note=TRAF-like superfamily protein; computational_description=TRAF-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974)%2C MATH (InterPro:IPR002083)%2C TRAF-type (InterPro:IPR013322)%3B BEST Arabidopsis thaliana protein match is: TRAF-like superfamily protein (TAIR:AT5G43560.2)%3B Has 16577 Blast hits to 11240 proteins in 949 species: Archae - 20%3B Bacteria - 1945%3B Metazoa - 5204%3B Fungi - 2178%3B Plants - 1117%3B Viruses - 112%3B Other Eukaryotes - 6001 (source: NCBI BLink).; Dbxref=PMID:12169696, PMID:15010618, PMID:15280248, PMID:18650403, PMID:18775970, locus:2018279; locus_type=protein_coding
AT1G04300.6	chr1:001148818	0.0	C/1148818-1149996,1150118-1150319,1150392-1150882,1150968-1151118,1151212-1151324,1151503-1151829	AT1G04300.6 CDS AT1G04300 ID=AT1G04300.6; Parent=AT1G04300; Name=AT1G04300.6; Note=TRAF-like superfamily protein; computational_description=TRAF-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974)%2C MATH (InterPro:IPR002083)%2C TRAF-type (InterPro:IPR013322)%3B BEST Arabidopsis thaliana protein match is: TRAF-like superfamily protein (TAIR:AT5G43560.2)%3B Has 16577 Blast hits to 11240 proteins in 949 species: Archae - 20%3B Bacteria - 1945%3B Metazoa - 5204%3B Fungi - 2178%3B Plants - 1117%3B Viruses - 112%3B Other Eukaryotes - 6001 (source: NCBI BLink).; Dbxref=PMID:12169696, PMID:15010618, PMID:15280248, PMID:18650403, PMID:18775970, locus:2018279; locus_type=protein_coding
AT1G04310.1	chr1:001155116	0.0	C/1155116-1155277,1155350-1157125	AT1G04310.1 CDS AT1G04310 ID=AT1G04310.1; Parent=AT1G04310; Name=AT1G04310.1; Note=ethylene response sensor 2; curator_summary=encodes an ethylene receptor related to bacterial two-component histidine kinases.; conf_class=1; symbol=ERS2; full_name=ethylene response sensor 2; computational_description=ethylene response sensor 2 (ERS2)%3B FUNCTIONS IN: ethylene binding%2C protein histidine kinase activity%2C receptor activity%2C glycogen synthase kinase 3 activity%3B INVOLVED IN: negative regulation of ethylene mediated signaling pathway%3B LOCATED IN: endomembrane system%2C membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain (InterPro:IPR003661)%2C GAF (InterPro:IPR003018)%3B BEST Arabidopsis thaliana protein match is: Signal transduction histidine kinase%2C hybrid-type%2C ethylene sensor (TAIR:AT3G23150.1)%3B Has 9957 Blast hits to 9833 proteins in 1310 species: Archae - 33%3B Bacteria - 8177%3B Metazoa - 2%3B Fungi - 375%3B Plants - 1006%3B Viruses - 0%3B Other Eukaryotes - 364 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:10938361, PMID:9707532, PMID:9695954, PMID:7569898, PMID:12509505, PMID:15466220, PMID:15643078, PMID:15703053, PMID:17224067, PMID:19825542, PMID:18577522, PMID:19190240, PMID:20062808, PMID:20374664, PMID:20835883, PMID:22227969, PMID:22467798, PMID:25704455, PMID:25682121, locus:2018259; locus_type=protein_coding
AT1G04310.2	chr1:001155116	0.0	C/1155116-1155277,1155350-1157125	AT1G04310.2 CDS AT1G04310 ID=AT1G04310.2; Parent=AT1G04310; Name=AT1G04310.2; Note=ethylene response sensor 2; symbol=ERS2; full_name=ethylene response sensor 2; Dbxref=PMID:10938361, PMID:9707532, PMID:9695954, PMID:7569898, PMID:12509505, PMID:15466220, PMID:15643078, PMID:15703053, PMID:17224067, PMID:19825542, PMID:18577522, PMID:19190240, PMID:20062808, PMID:20374664, PMID:20835883, PMID:22227969, PMID:22467798, PMID:25704455, PMID:25682121, locus:2018259; curator_summary=encodes an ethylene receptor related to bacterial two-component histidine kinases.; computational_description=ethylene response sensor 2 (ERS2)%3B FUNCTIONS IN: ethylene binding%2C protein histidine kinase activity%2C receptor activity%2C glycogen synthase kinase 3 activity%3B INVOLVED IN: negative regulation of ethylene mediated signaling pathway%3B LOCATED IN: endomembrane system%2C membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain (InterPro:IPR003661)%2C GAF (InterPro:IPR003018)%3B BEST Arabidopsis thaliana protein match is: Signal transduction histidine kinase%2C hybrid-type%2C ethylene sensor (TAIR:AT3G23150.1)%3B Has 9957 Blast hits to 9833 proteins in 1310 species: Archae - 33%3B Bacteria - 8177%3B Metazoa - 2%3B Fungi - 375%3B Plants - 1006%3B Viruses - 0%3B Other Eukaryotes - 364 (source: NCBI BLink).; locus_type=protein_coding
AT1TE03780	chr1:001157763	0.0	W/1157763-1157863	AT1TE03780 transposable_element AT1TE03780 ID=AT1TE03780; Name=AT1TE03780; Alias=LIMPET1
AT1G04320.1	chr1:001159023	0.0	W/1159023-1159093	AT1G04320.1 tRNA AT1G04320 ID=AT1G04320.1; Parent=AT1G04320; Note=tRNA-Gly; computational_description=tRNA-Gly (anticodon: GCC); Dbxref=PMID:8980477, PMID:23066098, PMID:8980477, locus:3688226; Name=AT1G04320.1; locus_type=pre_trna
AT1TE03785	chr1:001160069	0.0	W/1160069-1161330	AT1TE03785 transposable_element AT1TE03785 ID=AT1TE03785; Name=AT1TE03785; Alias=ATREP11A
AT1TE03790	chr1:001161331	0.0	W/1161331-1161548	AT1TE03790 transposable_element AT1TE03790 ID=AT1TE03790; Name=AT1TE03790; Alias=HELITRONY1D
AT1G04330.1	chr1:001161584	0.0	C/1161584-1161886	AT1G04330.1 CDS AT1G04330 ID=AT1G04330.1; Parent=AT1G04330; Name=AT1G04330.1; Note=hypothetical protein; conf_class=1; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23170.1)%3B Has 74 Blast hits to 74 proteins in 6 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 74%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14576160, PMID:20736450, locus:2018249; locus_type=protein_coding
AT1G04340.1	chr1:001163345	0.0	C/1163345-1163452,1163606-1163704,1163791-1163880,1163972-1164086,1164670-1164737	AT1G04340.1 CDS AT1G04340 ID=AT1G04340.1; Parent=AT1G04340; Name=AT1G04340.1; Note=HR-like lesion-inducing protein-like protein; conf_class=2; computational_description=HR-like lesion-inducing protein-related%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: HR-like lesion-inducer (InterPro:IPR008637)%3B BEST Arabidopsis thaliana protein match is: HR-like lesion-inducing protein-related (TAIR:AT5G43460.1)%3B Has 168 Blast hits to 168 proteins in 33 species: Archae - 4%3B Bacteria - 16%3B Metazoa - 0%3B Fungi - 0%3B Plants - 141%3B Viruses - 0%3B Other Eukaryotes - 7 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, locus:2018364; locus_type=protein_coding
AT1G04350.1	chr1:001165296	0.0	W/1165296-1165801,1165873-1166194,1166284-1166538	AT1G04350.1 CDS AT1G04350 ID=AT1G04350.1; Parent=AT1G04350; Name=AT1G04350.1; Note=2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; curator_summary=encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase; conf_class=2; computational_description=2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein%3B CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123)%3B BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT5G59540.1)%3B Has 8112 Blast hits to 8080 proteins in 977 species: Archae - 0%3B Bacteria - 1066%3B Metazoa - 116%3B Fungi - 819%3B Plants - 4883%3B Viruses - 0%3B Other Eukaryotes - 1228 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12753585, PMID:12972669, PMID:16021339, PMID:16317577, PMID:17587374, PMID:18710561, locus:2018349; locus_type=protein_coding
AT1G04360.1	chr1:001167507	0.0	C/1167507-1168652	AT1G04360.1 CDS AT1G04360 ID=AT1G04360.1; Parent=AT1G04360; Name=AT1G04360.1; Note=RING/U-box superfamily protein; conf_class=1; Alias=ATL1, ARABIDOPSIS TOXICOS EN LEVADURA 1; computational_description=RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B EXPRESSED IN: hypocotyl%2C root%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G43420.1)%3B Has 9268 Blast hits to 9239 proteins in 300 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2276%3B Fungi - 656%3B Plants - 4907%3B Viruses - 85%3B Other Eukaryotes - 1344 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11983057, PMID:14576160, PMID:15634198, PMID:16897085, PMID:25398498, locus:2018334; locus_type=protein_coding
AT1TE03830	chr1:001174434	0.0	C/1174434-1174891	AT1TE03830 transposable_element AT1TE03830 ID=AT1TE03830; Name=AT1TE03830; Alias=HELITRONY3
AT1TE03835	chr1:001174892	0.0	W/1174892-1174958	AT1TE03835 transposable_element AT1TE03835 ID=AT1TE03835; Name=AT1TE03835; Alias=HELITRONY1D
AT1G04370.1	chr1:001175177	0.0	W/1175177-1175578	AT1G04370.1 CDS AT1G04370 ID=AT1G04370.1; Parent=AT1G04370; Name=AT1G04370.1; Note=Ethylene-responsive element binding factor 14; curator_summary=encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1%2C ATERF-2%2C AND ATERF-5.; conf_class=1; symbol=ERF14; Alias=ATERF14, Ethylene-responsive element binding factor 14; full_name=Ethylene-responsive element binding factor 14; computational_description=Ethylene-responsive element binding factor 14 (ERF14)%3B CONTAINS InterPro DOMAIN/s: DNA-binding%2C integrase-type (InterPro:IPR016177)%2C Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (InterPro:IPR001471)%3B BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G43410.1)%3B Has 6105 Blast hits to 5744 proteins in 253 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 6091%3B Viruses - 2%3B Other Eukaryotes - 12 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:9687012, PMID:11118137, PMID:11950980, PMID:15908439, PMID:16183832, PMID:17616737, PMID:18467450, PMID:21389781, PMID:22140554, PMID:22563431, locus:2018289; locus_type=protein_coding
AT1G04380.1	chr1:001177142	0.0	C/1177142-1177393,1177526-1177847,1177921-1178384	AT1G04380.1 CDS AT1G04380 ID=AT1G04380.1; Parent=AT1G04380; Name=AT1G04380.1; Note=2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; curator_summary=encodes a protein similar to a 2-oxoglutarate-dependent dioxygenase; conf_class=2; computational_description=2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein%3B FUNCTIONS IN: 2-oxoglutarate-dependent dioxygenase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: hypocotyl%2C flower%2C cultured cell%3B EXPRESSED DURING: petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123)%3B BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G04350.1)%3B Has 8121 Blast hits to 8082 proteins in 999 species: Archae - 0%3B Bacteria - 1115%3B Metazoa - 117%3B Fungi - 760%3B Plants - 4878%3B Viruses - 0%3B Other Eukaryotes - 1251 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15280248, PMID:20736450, locus:2018274; locus_type=protein_coding
AT1G04380.2	chr1:001177496	0.0	C/1177496-1177847,1177921-1178384	AT1G04380.2 CDS AT1G04380 ID=AT1G04380.2; Parent=AT1G04380; Name=AT1G04380.2; Note=2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; curator_summary=encodes a protein similar to a 2-oxoglutarate-dependent dioxygenase; computational_description=2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein%3B FUNCTIONS IN: 2-oxoglutarate-dependent dioxygenase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: hypocotyl%2C flower%2C cultured cell%3B EXPRESSED DURING: petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123)%3B BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G04350.1)%3B Has 8121 Blast hits to 8082 proteins in 999 species: Archae - 0%3B Bacteria - 1115%3B Metazoa - 117%3B Fungi - 760%3B Plants - 4878%3B Viruses - 0%3B Other Eukaryotes - 1251 (source: NCBI BLink).; Dbxref=PMID:15280248, PMID:20736450, locus:2018274; locus_type=protein_coding
AT1G04257.1	chr1:001178925	0.0	W/1178925-1179176	AT1G04257.1 lnc_RNA AT1G04257 ID=AT1G04257.1; Parent=AT1G04257; Name=AT1G04257.1; locus_type=long_noncoding_rna
AT1G04390.1	chr1:001179678	0.0	C/1179678-1180110,1180479-1180631,1180717-1181841,1181938-1182380,1182454-1182587,1182691-1183198,1183302-1183428,1183530-1183615	AT1G04390.1 CDS AT1G04390 ID=AT1G04390.1; Parent=AT1G04390; Name=AT1G04390.1; Note=BTB/POZ domain-containing protein; conf_class=6; computational_description=BTB/POZ domain-containing protein%3B CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069)%2C BTB/POZ fold (InterPro:IPR011333)%2C Kelch related (InterPro:IPR013089)%2C BTB/POZ-like (InterPro:IPR000210)%3B Has 143 Blast hits to 130 proteins in 28 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 38%3B Fungi - 0%3B Plants - 104%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:15280248, PMID:15377757, PMID:15749712, PMID:17720868, PMID:20736450, locus:2018264; locus_type=protein_coding
AT1TE03860	chr1:001184970	0.0	C/1184970-1185352	AT1TE03860 transposable_element AT1TE03860 ID=AT1TE03860; Name=AT1TE03860; Alias=ATHPOGON1
AT1TE03865	chr1:001185353	0.0	C/1185353-1185394	AT1TE03865 transposable_element AT1TE03865 ID=AT1TE03865; Name=AT1TE03865; Alias=ATREP1
AT1TE03870	chr1:001185395	0.0	C/1185395-1185428	AT1TE03870 transposable_element AT1TE03870 ID=AT1TE03870; Name=AT1TE03870; Alias=BRODYAGA1A
AT1G04400.1	chr1:001185719	0.0	C/1185719-1186306,1186452-1187164,1187260-1187484,1187589-1187901	AT1G04400.1 CDS AT1G04400 ID=AT1G04400.1; Parent=AT1G04400; Name=AT1G04400.1; Note=cryptochrome 2; curator_summary=Blue light receptor mediating blue-light regulated cotyledon expansion and flowering time. Positive regulator of the flowering-time gene CONSTANS. This gene possesses a light-induced CNT2 N-terminal homodimerisation domain.Involved in blue-light induced stomatal opening. Involved in triggering chromatin decondensation. An 80-residue motif (NC80) is sufficient to confer CRY2's physiological function. It is proposed that the PHR domain and the C-terminal tail of the unphosphorylated CRY2 form a closed conformation to suppress the NC80 motif in the absence of light. In response to blue light%2C the C-terminal tail of CRY2 is phosphorylated and electrostatically repelled from the surface of the PHR domain to form an open conformation%2C resulting in derepression of the NC80 motif and signal transduction to trigger photomorphogenic responses. Cry2 phosphorylation and degradation both occur in the nucleus.; conf_class=2; symbol=CRY2; Alias=AT-PHH1, ATCRY2, FHA, PHH1; full_name=cryptochrome 2; computational_description=cryptochrome 2 (CRY2)%3B FUNCTIONS IN: protein homodimerization activity%2C blue light photoreceptor activity%3B INVOLVED IN: in 9 processes%3B LOCATED IN: nucleus%2C vacuole%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729)%2C Cryptochrome/DNA photolyase%2C class 1 conserved site%2C C-terminal (InterPro:IPR018394)%2C DNA photolyase%2C N-terminal (InterPro:IPR006050)%2C DNA photolyase%2C FAD-binding/Cryptochrome%2C C-terminal (InterPro:IPR005101)%2C Cryptochrome%2C plant (InterPro:IPR014134)%2C Cryptochrome/DNA photolyase%2C class 1 (InterPro:IPR002081)%3B BEST Arabidopsis thaliana protein match is: cryptochrome 1 (TAIR:AT4G08920.1)%3B Has 10129 Blast hits to 10113 proteins in 1516 species: Archae - 99%3B Bacteria - 3201%3B Metazoa - 386%3B Fungi - 148%3B Plants - 723%3B Viruses - 2%3B Other Eukaryotes - 5570 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10985392, PMID:10908878, PMID:10809448, PMID:10649883, PMID:10611956, PMID:10571889, PMID:10557359, PMID:10476076, PMID:10476075, PMID:10417705, PMID:10364413, PMID:10333589, PMID:10207133, PMID:9768355, PMID:9651577, PMID:9615462, PMID:9565033, PMID:9490743, PMID:9482948, PMID:9478898, PMID:9003312, PMID:8628249, PMID:11089975, PMID:11760010, PMID:11752385, PMID:11752373, PMID:11743105, PMID:11726930, PMID:11493548, PMID:11319034, PMID:11298364, PMID:11553757, PMID:11509693, PMID:11402206, PMID:11439133, PMID:12068118, PMID:12066190, PMID:12140515, PMID:12239570, PMID:12445126, PMID:12540824, PMID:12578985, PMID:11722775, PMID:12834405, PMID:8819875, PMID:14605225, PMID:14605222, PMID:14982991, PMID:15111714, PMID:15280248, PMID:15248119, PMID:15618424, PMID:15705950, PMID:15805487, PMID:15960622, PMID:15961900, PMID:16093319, PMID:16703358, PMID:16876787, PMID:16955271, PMID:17182003, PMID:17259260, PMID:17302430, PMID:17355959, PMID:17470059, PMID:17438275, PMID:17478635, PMID:17965271, PMID:17982000, PMID:18273534, PMID:18424613, PMID:18532976, PMID:18791256, PMID:18988809, PMID:19106300, PMID:19141709, PMID:19255368, PMID:17916114, PMID:19517252, PMID:19704768, PMID:19840926, PMID:19841666, PMID:19841662, PMID:19965572, PMID:20031923, PMID:20031915, PMID:20031911, PMID:20202166, PMID:20705178, PMID:20624951, PMID:20935177, PMID:20926618, PMID:21057210, PMID:21037589, PMID:21296763, PMID:21514160, PMID:21649509, PMID:21765176, PMID:21896889, PMID:21988878, PMID:22139370, PMID:21979077, PMID:21841916, PMID:22311776, PMID:22739826, PMID:23252608, PMID:23314496, PMID:11144265, PMID:23398192, PMID:23506537, PMID:23669744, PMID:23897926, PMID:23877069, PMID:23833191, PMID:24090449, PMID:24130508, PMID:24101505, PMID:25052717, PMID:25233328, PMID:25428980, PMID:25651969, locus:2018254; locus_type=protein_coding
AT1G04400.2	chr1:001185719	0.0	C/1185719-1186306,1186452-1187164,1187260-1187484,1187589-1187901	AT1G04400.2 CDS AT1G04400 ID=AT1G04400.2; Parent=AT1G04400; Name=AT1G04400.2; Note=cryptochrome 2; curator_summary=Blue light receptor mediating blue-light regulated cotyledon expansion and flowering time. Positive regulator of the flowering-time gene CONSTANS. This gene possesses a light-induced CNT2 N-terminal homodimerisation domain.Involved in blue-light induced stomatal opening. Involved in triggering chromatin decondensation. An 80-residue motif (NC80) is sufficient to confer CRY2's physiological function. It is proposed that the PHR domain and the C-terminal tail of the unphosphorylated CRY2 form a closed conformation to suppress the NC80 motif in the absence of light. In response to blue light%2C the C-terminal tail of CRY2 is phosphorylated and electrostatically repelled from the surface of the PHR domain to form an open conformation%2C resulting in derepression of the NC80 motif and signal transduction to trigger photomorphogenic responses. Cry2 phosphorylation and degradation both occur in the nucleus.; conf_class=2; symbol=CRY2; Alias=AT-PHH1, ATCRY2, FHA, PHH1; full_name=cryptochrome 2; computational_description=cryptochrome 2 (CRY2)%3B FUNCTIONS IN: protein homodimerization activity%2C blue light photoreceptor activity%3B INVOLVED IN: in 9 processes%3B LOCATED IN: nucleus%2C vacuole%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729)%2C Cryptochrome/DNA photolyase%2C class 1 conserved site%2C C-terminal (InterPro:IPR018394)%2C DNA photolyase%2C N-terminal (InterPro:IPR006050)%2C DNA photolyase%2C FAD-binding/Cryptochrome%2C C-terminal (InterPro:IPR005101)%2C Cryptochrome%2C plant (InterPro:IPR014134)%2C Cryptochrome/DNA photolyase%2C class 1 (InterPro:IPR002081)%3B BEST Arabidopsis thaliana protein match is: cryptochrome 1 (TAIR:AT4G08920.1)%3B Has 10129 Blast hits to 10113 proteins in 1516 species: Archae - 99%3B Bacteria - 3201%3B Metazoa - 386%3B Fungi - 148%3B Plants - 723%3B Viruses - 2%3B Other Eukaryotes - 5570 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10985392, PMID:10908878, PMID:10809448, PMID:10649883, PMID:10611956, PMID:10571889, PMID:10557359, PMID:10476076, PMID:10476075, PMID:10417705, PMID:10364413, PMID:10333589, PMID:10207133, PMID:9768355, PMID:9651577, PMID:9615462, PMID:9565033, PMID:9490743, PMID:9482948, PMID:9478898, PMID:9003312, PMID:8628249, PMID:11089975, PMID:11760010, PMID:11752385, PMID:11752373, PMID:11743105, PMID:11726930, PMID:11493548, PMID:11319034, PMID:11298364, PMID:11553757, PMID:11509693, PMID:11402206, PMID:11439133, PMID:12068118, PMID:12066190, PMID:12140515, PMID:12239570, PMID:12445126, PMID:12540824, PMID:12578985, PMID:11722775, PMID:12834405, PMID:8819875, PMID:14605225, PMID:14605222, PMID:14982991, PMID:15111714, PMID:15280248, PMID:15248119, PMID:15618424, PMID:15705950, PMID:15805487, PMID:15960622, PMID:15961900, PMID:16093319, PMID:16703358, PMID:16876787, PMID:16955271, PMID:17182003, PMID:17259260, PMID:17302430, PMID:17355959, PMID:17470059, PMID:17438275, PMID:17478635, PMID:17965271, PMID:17982000, PMID:18273534, PMID:18424613, PMID:18532976, PMID:18791256, PMID:18988809, PMID:19106300, PMID:19141709, PMID:19255368, PMID:17916114, PMID:19517252, PMID:19704768, PMID:19840926, PMID:19841666, PMID:19841662, PMID:19965572, PMID:20031923, PMID:20031915, PMID:20031911, PMID:20202166, PMID:20705178, PMID:20624951, PMID:20935177, PMID:20926618, PMID:21057210, PMID:21037589, PMID:21296763, PMID:21514160, PMID:21649509, PMID:21765176, PMID:21896889, PMID:21988878, PMID:22139370, PMID:21979077, PMID:21841916, PMID:22311776, PMID:22739826, PMID:23252608, PMID:23314496, PMID:11144265, PMID:23398192, PMID:23506537, PMID:23669744, PMID:23897926, PMID:23877069, PMID:23833191, PMID:24090449, PMID:24130508, PMID:24101505, PMID:25052717, PMID:25233328, PMID:25428980, PMID:25651969, locus:2018254; locus_type=protein_coding
AT1G04410.1	chr1:001189418	0.0	C/1189418-1189512,1189601-1189712,1189805-1189940,1190030-1190307,1190465-1190640,1190747-1190905,1191225-1191267	AT1G04410.1 CDS AT1G04410 ID=AT1G04410.1; Parent=AT1G04410; Name=AT1G04410.1; Note=Lactate/malate dehydrogenase family protein; curator_summary=predicted to encode a cytosolic malate dehydrogenase.; conf_class=2; symbol=c-NAD-MDH1; full_name=cytosolic-NAD-dependent malate dehydrogenase 1; computational_description=Lactate/malate dehydrogenase family protein%3B FUNCTIONS IN: in 6 functions%3B INVOLVED IN: response to cadmium ion%2C response to zinc ion%2C response to salt stress%3B LOCATED IN: in 7 components%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Malate dehydrogenase%2C NAD-dependent%2C cytosolic (InterPro:IPR011274)%2C Lactate/malate dehydrogenase%2C N-terminal (InterPro:IPR001236)%2C Malate dehydrogenase%2C NAD/NADP (InterPro:IPR010945)%2C Lactate/malate dehydrogenase%2C C-terminal (InterPro:IPR022383)%2C NAD(P)-binding domain (InterPro:IPR016040)%2C L-lactate/malate dehydrogenase (InterPro:IPR001557)%2C Malate dehydrogenase%2C active site (InterPro:IPR001252)%2C Lactate dehydrogenase/glycoside hydrolase%2C family 4%2C C-terminal (InterPro:IPR015955)%3B BEST Arabidopsis thaliana protein match is: Lactate/malate dehydrogenase family protein (TAIR:AT5G43330.1)%3B Has 11998 Blast hits to 11997 proteins in 3022 species: Archae - 169%3B Bacteria - 7171%3B Metazoa - 1456%3B Fungi - 287%3B Plants - 683%3B Viruses - 0%3B Other Eukaryotes - 2232 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12644654, PMID:12732715, PMID:14500793, PMID:14730065, PMID:14749482, PMID:15052571, PMID:15047896, PMID:15280248, PMID:15276449, PMID:15352244, PMID:15769804, PMID:15829605, PMID:15971193, PMID:15908592, PMID:15923328, PMID:16254930, PMID:16247729, PMID:16367961, PMID:16400686, PMID:16502469, PMID:16679420, PMID:17189330, PMID:17163439, PMID:17828791, PMID:18650403, PMID:18811951, PMID:18784283, PMID:19880396, PMID:20118269, PMID:20876337, PMID:22104211, PMID:23289948, PMID:24064926, locus:2018244; locus_type=protein_coding
AT1G04420.1	chr1:001191634	0.0	W/1191634-1191858,1191939-1192034,1192214-1192297,1192413-1192573,1192718-1192835,1192925-1193060,1193143-1193321,1193460-1193699	AT1G04420.1 CDS AT1G04420 ID=AT1G04420.1; Parent=AT1G04420; Name=AT1G04420.1; Note=NAD(P)-linked oxidoreductase superfamily protein; conf_class=2; computational_description=NAD(P)-linked oxidoreductase superfamily protein%3B FUNCTIONS IN: oxidoreductase activity%2C aldo-keto reductase activity%3B INVOLVED IN: oxidation reduction%3B LOCATED IN: chloroplast%2C chloroplast stroma%2C chloroplast envelope%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395)%3B BEST Arabidopsis thaliana protein match is: potassium channel beta subunit 1 (TAIR:AT1G04690.1)%3B Has 28623 Blast hits to 28597 proteins in 2530 species: Archae - 619%3B Bacteria - 18927%3B Metazoa - 1497%3B Fungi - 1929%3B Plants - 977%3B Viruses - 0%3B Other Eukaryotes - 4674 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:15280248, PMID:16449229, PMID:18650403, locus:2018239; locus_type=protein_coding
AT1G04425.1	chr1:001194187	0.0	W/1194187-1196889	AT1G04425.1 ncRNA AT1G04425 ID=AT1G04425.1; Parent=AT1G04425; Name=AT1G04425.1; index=1; Dbxref=locus:4515102495; Note=other_RNA; locus_type=other_rna
AT1TE03900	chr1:001194345	0.0	W/1194345-1195166	AT1TE03900 transposable_element AT1TE03900 ID=AT1TE03900; Name=AT1TE03900; Alias=ATREP10D
AT1G08835.1	chr1:001195528	0.0	C/1195528-1196657	AT1G08835.1 transcript_region AT1G08835 ID=AT1G08835.1; Parent=AT1G08835; computational_description=novel transcribed region; Name=AT1G08835.1; locus_type=novel_transcribed_region
AT1G08835.2	chr1:001195650	0.0	C/1195650-1196657	AT1G08835.2 transcript_region AT1G08835 ID=AT1G08835.2; Parent=AT1G08835; computational_description=novel transcribed region; Name=AT1G08835.2; locus_type=novel_transcribed_region
AT1TE03905	chr1:001197069	0.0	C/1197069-1197444	AT1TE03905 transposable_element AT1TE03905 ID=AT1TE03905; Name=AT1TE03905; Alias=VANDALNX2
AT1G04430.1	chr1:001198860	0.0	W/1198860-1199114,1199197-1199361,1199459-1199641,1199710-1200304,1200424-1200536,1200643-1200863,1200962-1201301	AT1G04430.1 CDS AT1G04430 ID=AT1G04430.1; Parent=AT1G04430; Name=AT1G04430.1; Note=S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; conf_class=2; computational_description=S-adenosyl-L-methionine-dependent methyltransferases superfamily protein%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: Golgi apparatus%2C plasma membrane%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248%2C methyltransferase putative (InterPro:IPR004159)%3B BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT3G23300.1)%3B Has 1231 Blast hits to 1208 proteins in 77 species: Archae - 0%3B Bacteria - 97%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1110%3B Viruses - 0%3B Other Eukaryotes - 24 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15295017, PMID:16618929, PMID:18650403, PMID:18775970, locus:2018329; locus_type=protein_coding
AT1G04430.2	chr1:001198860	0.0	W/1198860-1199114,1199197-1199361,1199459-1199641,1199710-1200304,1200424-1200536,1200643-1200863,1200962-1201301	AT1G04430.2 CDS AT1G04430 ID=AT1G04430.2; Parent=AT1G04430; Name=AT1G04430.2; Note=S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; conf_class=2; computational_description=S-adenosyl-L-methionine-dependent methyltransferases superfamily protein%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: Golgi apparatus%2C plasma membrane%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248%2C methyltransferase putative (InterPro:IPR004159)%3B BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT3G23300.1)%3B Has 1231 Blast hits to 1208 proteins in 77 species: Archae - 0%3B Bacteria - 97%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1110%3B Viruses - 0%3B Other Eukaryotes - 24 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15295017, PMID:16618929, PMID:18650403, PMID:18775970, locus:2018329; locus_type=protein_coding
AT1G04430.3	chr1:001198860	0.0	W/1198860-1199114,1199197-1199361,1199459-1199641,1199710-1200304,1200424-1200536,1200643-1200863,1200962-1201301	AT1G04430.3 CDS AT1G04430 ID=AT1G04430.3; Parent=AT1G04430; Name=AT1G04430.3; Note=S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Dbxref=PMID:15295017, PMID:16618929, PMID:18650403, PMID:18775970, locus:2018329; computational_description=S-adenosyl-L-methionine-dependent methyltransferases superfamily protein%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: Golgi apparatus%2C plasma membrane%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248%2C methyltransferase putative (InterPro:IPR004159)%3B BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT3G23300.1)%3B Has 1231 Blast hits to 1208 proteins in 77 species: Archae - 0%3B Bacteria - 97%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1110%3B Viruses - 0%3B Other Eukaryotes - 24 (source: NCBI BLink).; locus_type=protein_coding
AT1TE03915	chr1:001201616	0.0	C/1201616-1202034	AT1TE03915 transposable_element AT1TE03915 ID=AT1TE03915; Name=AT1TE03915; Alias=ATDNA2T9C
AT1G04440.1	chr1:001202815	0.0	W/1202815-1202890,1202976-1203016,1203104-1203173,1203272-1203420,1203495-1203590,1203698-1203768,1203844-1203905,1204044-1204107,1204182-1204266,1204393-1204519,1204619-1204704,1204795-1204858,1205115-1205251,1205386-1205664	AT1G04440.1 CDS AT1G04440 ID=AT1G04440.1; Parent=AT1G04440; Name=AT1G04440.1; Note=casein kinase like 13; conf_class=2; symbol=CKL13; full_name=casein kinase like 13; computational_description=casein kinase like 13 (CKL13)%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: casein kinase I-like 8 (TAIR:AT5G43320.1)%3B Has 52915 Blast hits to 51269 proteins in 2162 species: Archae - 36%3B Bacteria - 8821%3B Metazoa - 19243%3B Fungi - 5604%3B Plants - 8347%3B Viruses - 301%3B Other Eukaryotes - 10563 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12169696, PMID:12913170, PMID:15010618, PMID:15310832, PMID:15341630, PMID:16126836, PMID:17551672, PMID:18650403, PMID:18805951, PMID:21477822, locus:2018269; locus_type=protein_coding
AT1TE03925	chr1:001205705	0.0	C/1205705-1205739	AT1TE03925 transposable_element AT1TE03925 ID=AT1TE03925; Name=AT1TE03925; Alias=ATREP5
AT1TE03930	chr1:001205740	0.0	W/1205740-1206603	AT1TE03930 transposable_element AT1TE03930 ID=AT1TE03930; Name=AT1TE03930; Alias=ATREP3
AT1TE03935	chr1:001206604	0.0	W/1206604-1207093	AT1TE03935 transposable_element AT1TE03935 ID=AT1TE03935; Name=AT1TE03935; Alias=ATREP15
AT1G04445.2	chr1:001207338	0.0	W/1207338-1207862	AT1G04445.2 CDS AT1G04445 ID=AT1G04445.2; Parent=AT1G04445; Name=AT1G04445.2; Note=C2H2-like zinc finger protein; computational_description=C2H2-like zinc finger protein%3B FUNCTIONS IN: zinc ion binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: intracellular%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C C2H2-like (InterPro:IPR015880)%2C Zinc finger%2C C2H2-type (InterPro:IPR007087)%3B Has 4 Blast hits to 4 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 4%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=locus:504956290; locus_type=protein_coding
AT1G04445.1	chr1:001207344	0.0	W/1207344-1207862	AT1G04445.1 CDS AT1G04445 ID=AT1G04445.1; Parent=AT1G04445; Name=AT1G04445.1; Note=C2H2-like zinc finger protein; conf_class=4; computational_description=C2H2-like zinc finger protein%3B FUNCTIONS IN: zinc ion binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: intracellular%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C C2H2-like (InterPro:IPR015880)%2C Zinc finger%2C C2H2-type (InterPro:IPR007087)%3B Has 4 Blast hits to 4 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 4%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=***; Dbxref=locus:504956290; locus_type=protein_coding
AT1G04450.1	chr1:001209006	0.0	W/1209006-1209060,1209159-1209259,1209347-1209853	AT1G04450.1 CDS AT1G04450 ID=AT1G04450.1; Parent=AT1G04450; Name=AT1G04450.1; Note=ROP-interactive CRIB motif-containing protein 3; curator_summary=Encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). It interacts with Rop1 and is involved in pollen tube growth and function%2C and exocytosis in the pollen tube tip. The protein most similar to RIC1 (family subgroup III). Gene is expressed predominantly in inflorescence and flower tissue. Interacts with ROP1 to modulate calcium ion influxes required to generate tip-focused calcium gradients.It; conf_class=4; symbol=RIC3; full_name=ROP-interactive CRIB motif-containing protein 3; computational_description=ROP-interactive CRIB motif-containing protein 3 (RIC3)%3B FUNCTIONS IN: protein binding%3B INVOLVED IN: in 7 processes%3B LOCATED IN: cytoplasm%3B CONTAINS InterPro DOMAIN/s: PAK-box/P21-Rho-binding (InterPro:IPR000095)%3B BEST Arabidopsis thaliana protein match is: ROP-interactive CRIB motif-containing protein 1 (TAIR:AT2G33460.1)%3B Has 189 Blast hits to 189 proteins in 25 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 16%3B Fungi - 0%3B Plants - 170%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:11752391, PMID:15824136, PMID:18591430, PMID:20736450, locus:2018369; locus_type=protein_coding
AT1G04455.1	chr1:001210269	0.0	W/1210269-1210622	AT1G04455.1 CDS AT1G04455 ID=AT1G04455.1; Parent=AT1G04455; Name=AT1G04455.1; Note=hypothetical protein; locus_type=protein_coding
AT1G04457.1	chr1:001210319	0.0	C/1210319-1210549	AT1G04457.1 pseudogenic_transcript AT1G04457 ID=AT1G04457.1; Parent=AT1G04457; Name=AT1G04457.1; index=1; Note=pseudogene; curator_summary=Pseudogene of AT2G33450%3B 50S ribosomal protein L28%2C chloroplast (CL28); Dbxref=locus:5019474604, locus:5019474604; locus_type=pseudogene; computational_description=pseudogene of hypothetical protein
AT1G04470.1	chr1:001211177	0.0	C/1211177-1212144,1212222-1212408,1212486-1213158,1213230-1213897,1213980-1214591	AT1G04470.1 CDS AT1G04470 ID=AT1G04470.1; Parent=AT1G04470; Name=AT1G04470.1; Note=hypothetical protein (DUF810); conf_class=1; computational_description=CONTAINS InterPro DOMAIN/s: Munc13 homology 1 (InterPro:IPR014770)%2C Protein of unknown function DUF810 (InterPro:IPR008528)%2C Mammalian uncoordinated homology 13%2C domain 2 (InterPro:IPR014772)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF810) (TAIR:AT2G33420.1)%3B Has 201 Blast hits to 187 proteins in 29 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 3%3B Fungi - 4%3B Plants - 177%3B Viruses - 0%3B Other Eukaryotes - 13 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14500793, PMID:18775970, PMID:20736450, locus:2018339; locus_type=protein_coding
AT1G04263.1	chr1:001215731	0.0	C/1215731-1215831	AT1G04263.1 snRNA AT1G04263 ID=AT1G04263.1; Parent=AT1G04263; Name=AT1G04263.1; Note=U5; symbol=U5-6; Dbxref=PMID:15575968; Alias=U5.6; locus_type=small_nuclear_rna
AT1G04480.1	chr1:001216110	0.0	W/1216110-1216122,1216244-1216528,1217133-1217257	AT1G04480.1 CDS AT1G04480 ID=AT1G04480.1; Parent=AT1G04480; Name=AT1G04480.1; Note=Ribosomal protein L14p/L23e family protein; conf_class=2; computational_description=Ribosomal protein L14p/L23e family protein%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%3B LOCATED IN: ribosome%2C intracellular%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L14b/L23e (InterPro:IPR000218)%2C Ribosomal protein L14 conserved site (InterPro:IPR019972)%3B BEST Arabidopsis thaliana protein match is: Ribosomal protein L14p/L23e family protein (TAIR:AT3G04400.1)%3B Has 9301 Blast hits to 9300 proteins in 3178 species: Archae - 321%3B Bacteria - 5427%3B Metazoa - 383%3B Fungi - 266%3B Plants - 815%3B Viruses - 0%3B Other Eukaryotes - 2089 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11598216, PMID:11752383, PMID:15280248, PMID:16623895, PMID:18775970, PMID:20736450, locus:2018309; locus_type=protein_coding
AT1G04267.1	chr1:001216552	0.0	W/1216552-1216691	AT1G04267.1 snoRNA AT1G04267 ID=AT1G04267.1; Parent=AT1G04267; Name=AT1G04267.1; Alias=AtsnoR155a; Dbxref=PMID:20081206, PMID:22820990; locus_type=small_nucleolar_rna
AT1G04273.1	chr1:001216722	0.0	W/1216722-1216865	AT1G04273.1 snoRNA AT1G04273 ID=AT1G04273.1; Parent=AT1G04273; Name=AT1G04273.1; Alias=AtsnoR155b; Dbxref=PMID:20081206, PMID:22820990; locus_type=small_nucleolar_rna
AT1G04277.1	chr1:001216921	0.0	W/1216921-1217061	AT1G04277.1 snoRNA AT1G04277 ID=AT1G04277.1; Parent=AT1G04277; Name=AT1G04277.1; Alias=AtsnoR155c; Dbxref=PMID:20081206, PMID:22820990; locus_type=small_nucleolar_rna
AT1G04490.1	chr1:001218020	0.0	C/1218020-1218181,1218282-1219325	AT1G04490.1 CDS AT1G04490 ID=AT1G04490.1; Parent=AT1G04490; Name=AT1G04490.1; Note=hypothetical protein (DUF3527); conf_class=2; computational_description=Protein of unknown function (DUF3527)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3527 (InterPro:IPR021916)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3527) (TAIR:AT2G33360.2)%3B Has 121 Blast hits to 119 proteins in 11 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 121%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:20736450, locus:2018299; locus_type=protein_coding
AT1G04490.2	chr1:001218020	0.0	C/1218020-1218181,1218282-1219325	AT1G04490.2 CDS AT1G04490 ID=AT1G04490.2; Parent=AT1G04490; Name=AT1G04490.2; Note=hypothetical protein (DUF3527); conf_class=1; computational_description=Protein of unknown function (DUF3527)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3527 (InterPro:IPR021916)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3527) (TAIR:AT2G33360.2)%3B Has 121 Blast hits to 119 proteins in 11 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 121%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:20736450, locus:2018299; locus_type=protein_coding
AT1G04490.3	chr1:001218020	0.0	C/1218020-1218181,1218282-1219325	AT1G04490.3 CDS AT1G04490 ID=AT1G04490.3; Parent=AT1G04490; Name=AT1G04490.3; Note=hypothetical protein (DUF3527); Dbxref=PMID:20736450, locus:2018299; computational_description=Protein of unknown function (DUF3527)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3527 (InterPro:IPR021916)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3527) (TAIR:AT2G33360.2)%3B Has 121 Blast hits to 119 proteins in 11 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 121%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; locus_type=protein_coding
AT1G04490.5	chr1:001218020	0.0	C/1218020-1218181,1218282-1219325	AT1G04490.5 CDS AT1G04490 ID=AT1G04490.5; Parent=AT1G04490; Name=AT1G04490.5; Note=hypothetical protein (DUF3527); Dbxref=PMID:20736450, locus:2018299; computational_description=Protein of unknown function (DUF3527)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3527 (InterPro:IPR021916)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3527) (TAIR:AT2G33360.2)%3B Has 121 Blast hits to 119 proteins in 11 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 121%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; locus_type=protein_coding
AT1G04490.6	chr1:001218020	0.0	C/1218020-1218181,1218282-1219325	AT1G04490.6 CDS AT1G04490 ID=AT1G04490.6; Parent=AT1G04490; Name=AT1G04490.6; Note=hypothetical protein (DUF3527); Dbxref=PMID:20736450, locus:2018299; computational_description=Protein of unknown function (DUF3527)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3527 (InterPro:IPR021916)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3527) (TAIR:AT2G33360.2)%3B Has 121 Blast hits to 119 proteins in 11 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 121%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; locus_type=protein_coding
AT1G04490.7	chr1:001218020	0.0	C/1218020-1218181,1218282-1219325	AT1G04490.7 CDS AT1G04490 ID=AT1G04490.7; Parent=AT1G04490; Name=AT1G04490.7; Note=hypothetical protein (DUF3527); Dbxref=PMID:20736450, locus:2018299; computational_description=Protein of unknown function (DUF3527)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3527 (InterPro:IPR021916)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3527) (TAIR:AT2G33360.2)%3B Has 121 Blast hits to 119 proteins in 11 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 121%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; locus_type=protein_coding
AT1G04490.8	chr1:001218020	0.0	C/1218020-1218181,1218282-1219325	AT1G04490.8 CDS AT1G04490 ID=AT1G04490.8; Parent=AT1G04490; Name=AT1G04490.8; Note=hypothetical protein (DUF3527); Dbxref=PMID:20736450, locus:2018299; computational_description=Protein of unknown function (DUF3527)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3527 (InterPro:IPR021916)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3527) (TAIR:AT2G33360.2)%3B Has 121 Blast hits to 119 proteins in 11 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 121%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; locus_type=protein_coding
AT1G04490.9	chr1:001218020	0.0	C/1218020-1218181,1218282-1219325	AT1G04490.9 CDS AT1G04490 ID=AT1G04490.9; Parent=AT1G04490; Name=AT1G04490.9; Note=hypothetical protein (DUF3527); Dbxref=PMID:20736450, locus:2018299; computational_description=Protein of unknown function (DUF3527)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3527 (InterPro:IPR021916)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3527) (TAIR:AT2G33360.2)%3B Has 121 Blast hits to 119 proteins in 11 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 121%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; locus_type=protein_coding
AT1G04490.4	chr1:001218240	0.0	C/1218240-1219325	AT1G04490.4 CDS AT1G04490 ID=AT1G04490.4; Parent=AT1G04490; Name=AT1G04490.4; Note=hypothetical protein (DUF3527); computational_description=Protein of unknown function (DUF3527)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3527 (InterPro:IPR021916)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3527) (TAIR:AT2G33360.2)%3B Has 121 Blast hits to 119 proteins in 11 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 121%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=PMID:20736450, locus:2018299; locus_type=protein_coding
AT1G04500.1	chr1:001221757	0.0	C/1221757-1221864,1221956-1222081,1222174-1222365,1222489-1223181,1224194-1224235	AT1G04500.1 CDS AT1G04500 ID=AT1G04500.1; Parent=AT1G04500; Name=AT1G04500.1; Note=CCT motif family protein; conf_class=2; computational_description=CCT motif family protein%3B CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402)%3B BEST Arabidopsis thaliana protein match is: CCT motif family protein (TAIR:AT2G33350.2)%3B Has 1789 Blast hits to 1789 proteins in 111 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 2%3B Fungi - 2%3B Plants - 1654%3B Viruses - 0%3B Other Eukaryotes - 125 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15960623, PMID:16510518, PMID:18775970, PMID:20736450, PMID:21277284, locus:2018344; locus_type=protein_coding
AT1G04500.3	chr1:001221757	0.0	C/1221757-1221864,1221956-1222081,1222174-1222365,1222489-1223181,1223272-1223286	AT1G04500.3 CDS AT1G04500 ID=AT1G04500.3; Parent=AT1G04500; Name=AT1G04500.3; Note=CCT motif family protein; computational_description=CCT motif family protein%3B CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402)%3B BEST Arabidopsis thaliana protein match is: CCT motif family protein (TAIR:AT2G33350.2)%3B Has 1789 Blast hits to 1789 proteins in 111 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 2%3B Fungi - 2%3B Plants - 1654%3B Viruses - 0%3B Other Eukaryotes - 125 (source: NCBI BLink).; Dbxref=PMID:15960623, PMID:16510518, PMID:18775970, PMID:20736450, PMID:21277284, locus:2018344; locus_type=protein_coding
AT1G04500.4	chr1:001221757	0.0	C/1221757-1221864,1221956-1222081,1222174-1222365,1222489-1223181,1224194-1224235	AT1G04500.4 CDS AT1G04500 ID=AT1G04500.4; Parent=AT1G04500; Name=AT1G04500.4; Note=CCT motif family protein; Dbxref=PMID:15960623, PMID:16510518, PMID:18775970, PMID:20736450, PMID:21277284, locus:2018344; computational_description=CCT motif family protein%3B CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402)%3B BEST Arabidopsis thaliana protein match is: CCT motif family protein (TAIR:AT2G33350.2)%3B Has 1789 Blast hits to 1789 proteins in 111 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 2%3B Fungi - 2%3B Plants - 1654%3B Viruses - 0%3B Other Eukaryotes - 125 (source: NCBI BLink).; locus_type=protein_coding
AT1G04500.2	chr1:001221855	0.0	C/1221855-1221864,1221956-1222365,1222489-1223181,1224194-1224235	AT1G04500.2 CDS AT1G04500 ID=AT1G04500.2; Parent=AT1G04500; Name=AT1G04500.2; Note=CCT motif family protein; computational_description=CCT motif family protein%3B CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402)%3B BEST Arabidopsis thaliana protein match is: CCT motif family protein (TAIR:AT2G33350.2)%3B Has 1789 Blast hits to 1789 proteins in 111 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 2%3B Fungi - 2%3B Plants - 1654%3B Viruses - 0%3B Other Eukaryotes - 125 (source: NCBI BLink).; Dbxref=PMID:15960623, PMID:16510518, PMID:18775970, PMID:20736450, PMID:21277284, locus:2018344; locus_type=protein_coding
AT1G04510.1	chr1:001226749	0.0	W/1226749-1226761,1226852-1226937,1227087-1227158,1227247-1227309,1227580-1227666,1227816-1227957,1228046-1228167,1228331-1228447,1228706-1228801,1228897-1228956,1229054-1229128,1229233-1229337,1229504-1229623,1229717-1229794,1229893-1229977,1230065-1230116,1230303-1230373,1230465-1230592	AT1G04510.1 CDS AT1G04510 ID=AT1G04510.1; Parent=AT1G04510; Name=AT1G04510.1; Note=MOS4-associated complex 3A; curator_summary=Encodes MAC3A%2C a U-box proteins with homology to the yeast and human E3 ubiquitin ligase Prp19. Associated with the MOS4-Associated Complex (MAC). Involved in plant innate immunity.; conf_class=2; symbol=MAC3A; full_name=MOS4-associated complex 3A; computational_description=MOS4-associated complex 3A (MAC3A)%3B FUNCTIONS IN: ubiquitin-protein ligase activity%2C nucleotide binding%3B INVOLVED IN: response to cadmium ion%2C defense response to bacterium%3B LOCATED IN: nucleolus%2C nucleus%2C CUL4 RING ubiquitin ligase complex%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782)%2C U box domain (InterPro:IPR003613)%2C WD40 repeat (InterPro:IPR001680)%2C Pre-mRNA-splicing factor 19 (InterPro:IPR013915)%2C WD40 repeat-like-containing domain (InterPro:IPR011046)%2C WD40-repeat-containing domain (InterPro:IPR017986)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C WD40 repeat%2C subgroup (InterPro:IPR019781)%3B BEST Arabidopsis thaliana protein match is: MOS4-associated complex 3B (TAIR:AT2G33340.2)%3B Has 53700 Blast hits to 26315 proteins in 787 species: Archae - 70%3B Bacteria - 7824%3B Metazoa - 20612%3B Fungi - 11571%3B Plants - 6404%3B Viruses - 0%3B Other Eukaryotes - 7219 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15452276, PMID:15496452, PMID:16502469, PMID:18552200, PMID:18650403, PMID:19629177, PMID:20736450, PMID:20687615, locus:2018319; locus_type=protein_coding
AT1G04510.2	chr1:001226749	0.0	W/1226749-1226761,1226852-1226937,1227087-1227158,1227247-1227309,1227580-1227666,1227816-1227957,1228046-1228167,1228331-1228447,1228706-1228801,1228897-1228956,1229054-1229128,1229233-1229337,1229504-1229623,1229717-1229794,1229893-1229977,1230065-1230116,1230303-1230379,1230471-1230592	AT1G04510.2 CDS AT1G04510 ID=AT1G04510.2; Parent=AT1G04510; Name=AT1G04510.2; Note=MOS4-associated complex 3A; curator_summary=Encodes MAC3A%2C a U-box proteins with homology to the yeast and human E3 ubiquitin ligase Prp19. Associated with the MOS4-Associated Complex (MAC). Involved in plant innate immunity.; conf_class=2; symbol=MAC3A; full_name=MOS4-associated complex 3A; computational_description=MOS4-associated complex 3A (MAC3A)%3B FUNCTIONS IN: ubiquitin-protein ligase activity%2C nucleotide binding%3B INVOLVED IN: response to cadmium ion%2C defense response to bacterium%3B LOCATED IN: nucleolus%2C nucleus%2C CUL4 RING ubiquitin ligase complex%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782)%2C U box domain (InterPro:IPR003613)%2C WD40 repeat (InterPro:IPR001680)%2C Pre-mRNA-splicing factor 19 (InterPro:IPR013915)%2C WD40 repeat-like-containing domain (InterPro:IPR011046)%2C WD40-repeat-containing domain (InterPro:IPR017986)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C WD40 repeat%2C subgroup (InterPro:IPR019781)%3B BEST Arabidopsis thaliana protein match is: MOS4-associated complex 3B (TAIR:AT2G33340.2)%3B Has 53700 Blast hits to 26315 proteins in 787 species: Archae - 70%3B Bacteria - 7824%3B Metazoa - 20612%3B Fungi - 11571%3B Plants - 6404%3B Viruses - 0%3B Other Eukaryotes - 7219 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15452276, PMID:15496452, PMID:16502469, PMID:18552200, PMID:18650403, PMID:19629177, PMID:20736450, PMID:20687615, locus:2018319; locus_type=protein_coding
AT1G04520.1	chr1:001231852	0.0	W/1231852-1232272,1232605-1232991,1233493-1233600,1233780-1233787	AT1G04520.1 CDS AT1G04520 ID=AT1G04520.1; Parent=AT1G04520; Name=AT1G04520.1; Note=plasmodesmata-located protein 2; curator_summary=Encodes a plasmodesmal protein that may be involved in the intercellular movement of molecules through the plasmodesmata.; conf_class=2; symbol=PDLP2; full_name=plasmodesmata-located protein 2; computational_description=plasmodesmata-located protein 2 (PDLP2)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: N-terminal protein myristoylation%2C plasmodesmata-mediated intercellular transport%3B LOCATED IN: plasmodesma%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902)%3B BEST Arabidopsis thaliana protein match is: plasmodesmata-located protein 3 (TAIR:AT2G33330.1)%3B Has 1091 Blast hits to 1028 proteins in 65 species: Archae - 0%3B Bacteria - 64%3B Metazoa - 5%3B Fungi - 13%3B Plants - 1007%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12912986, PMID:15695462, PMID:18215111, PMID:19704520, PMID:20736450, PMID:20886105, locus:2018314; locus_type=protein_coding
AT1G04530.1	chr1:001234456	0.0	C/1234456-1234504,1234604-1234758,1234994-1235108,1235185-1235357,1235455-1235895	AT1G04530.1 CDS AT1G04530 ID=AT1G04530.1; Parent=AT1G04530; Name=AT1G04530.1; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; curator_summary=Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010%2C Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.; conf_class=2; symbol=TPR4; full_name=tetratricopeptide repeat 4; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B FUNCTIONS IN: binding%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990)%2C Tetratricopeptide repeat-containing (InterPro:IPR013026)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G17940.1)%3B Has 713 Blast hits to 362 proteins in 65 species: Archae - 10%3B Bacteria - 98%3B Metazoa - 37%3B Fungi - 8%3B Plants - 512%3B Viruses - 0%3B Other Eukaryotes - 48 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18218973, PMID:20856808, locus:2197768; locus_type=protein_coding
AT1G04540.1	chr1:001237256	0.0	W/1237256-1239061	AT1G04540.1 CDS AT1G04540 ID=AT1G04540.1; Parent=AT1G04540; Name=AT1G04540.1; Note=Calcium-dependent lipid-binding (CaLB domain) family protein; conf_class=1; computational_description=Calcium-dependent lipid-binding (CaLB domain) family protein%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: membrane%3B EXPRESSED IN: 10 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%2C C globular stage%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: C2 calcium/lipid-binding domain%2C CaLB (InterPro:IPR008973)%2C C2 calcium-dependent membrane targeting (InterPro:IPR000008)%3B BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT2G33320.1)%3B Has 556 Blast hits to 454 proteins in 75 species: Archae - 0%3B Bacteria - 32%3B Metazoa - 92%3B Fungi - 46%3B Plants - 336%3B Viruses - 0%3B Other Eukaryotes - 50 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14500793, PMID:18252252, PMID:18775970, PMID:20736450, locus:2197868; locus_type=protein_coding
AT1G04550.1	chr1:001240582	0.0	W/1240582-1240784,1241057-1241375	AT1G04550.1 CDS AT1G04550 ID=AT1G04550.1; Parent=AT1G04550; Name=AT1G04550.1; Note=AUX/IAA transcriptional regulator family protein; curator_summary=IAA12/BDL plays a role in auxin-mediated processes of apical-basal patterning in the embryo. bdl mutants lack a primary root meristem; conf_class=2; symbol=IAA12; Alias=BDL, BODENLOS; full_name=indole-3-acetic acid inducible 12; computational_description=indole-3-acetic acid inducible 12 (IAA12)%3B FUNCTIONS IN: transcription repressor activity%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: xylem and phloem pattern formation%2C response to auxin stimulus%2C embryonic pattern specification%2C root development%3B LOCATED IN: nucleus%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525)%2C AUX/IAA protein (InterPro:IPR003311)%3B BEST Arabidopsis thaliana protein match is: auxin-induced protein 13 (TAIR:AT2G33310.3)%3B Has 1087 Blast hits to 1087 proteins in 52 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1087%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10068632, PMID:11118137, PMID:12036262, PMID:12101120, PMID:12682009, PMID:12839993, PMID:16489122, PMID:16459305, PMID:15992545, PMID:18258861, PMID:19000164, PMID:19309453, PMID:15889151, PMID:20133796, PMID:20736450, PMID:20852917, PMID:21228633, PMID:21252300, PMID:21478855, PMID:22158464, PMID:22264733, PMID:22527388, PMID:22476291, PMID:22995285, PMID:23319550, PMID:22349732, PMID:23682118, locus:2197838; locus_type=protein_coding
AT1G04550.2	chr1:001240582	0.0	W/1240582-1240784,1241057-1241343,1241425-1241542,1241616-1241677,1241761-1241810	AT1G04550.2 CDS AT1G04550 ID=AT1G04550.2; Parent=AT1G04550; Name=AT1G04550.2; Note=AUX/IAA transcriptional regulator family protein; curator_summary=IAA12/BDL plays a role in auxin-mediated processes of apical-basal patterning in the embryo. bdl mutants lack a primary root meristem; conf_class=2; symbol=IAA12; Alias=BDL, BODENLOS; full_name=indole-3-acetic acid inducible 12; computational_description=indole-3-acetic acid inducible 12 (IAA12)%3B FUNCTIONS IN: transcription repressor activity%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: xylem and phloem pattern formation%2C response to auxin stimulus%2C embryonic pattern specification%2C root development%3B LOCATED IN: nucleus%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525)%2C AUX/IAA protein (InterPro:IPR003311)%3B BEST Arabidopsis thaliana protein match is: auxin-induced protein 13 (TAIR:AT2G33310.3)%3B Has 1087 Blast hits to 1087 proteins in 52 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1087%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10068632, PMID:11118137, PMID:12036262, PMID:12101120, PMID:12682009, PMID:12839993, PMID:16489122, PMID:16459305, PMID:15992545, PMID:18258861, PMID:19000164, PMID:19309453, PMID:15889151, PMID:20133796, PMID:20736450, PMID:20852917, PMID:21228633, PMID:21252300, PMID:21478855, PMID:22158464, PMID:22264733, PMID:22527388, PMID:22476291, PMID:22995285, PMID:23319550, PMID:22349732, PMID:23682118, locus:2197838; locus_type=protein_coding
AT1G04555.1	chr1:001242743	0.0	W/1242743-1242896,1243442-1243512,1243608-1243743,1243852-1243949	AT1G04555.1 CDS AT1G04555 ID=AT1G04555.1; Parent=AT1G04555; Name=AT1G04555.1; Note=transmembrane protein; conf_class=2; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G33380.1)%3B Has 84 Blast hits to 83 proteins in 15 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 9%3B Fungi - 0%3B Plants - 75%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:20032078, locus:4010713411; locus_type=protein_coding
AT1G04560.1	chr1:001245070	0.0	W/1245070-1245199,1245292-1245469,1245636-1245888	AT1G04560.1 CDS AT1G04560 ID=AT1G04560.1; Parent=AT1G04560; Name=AT1G04560.1; Note=AWPM-19-like family protein; conf_class=2; computational_description=AWPM-19-like family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: AWPM-19-like (InterPro:IPR008390)%3B BEST Arabidopsis thaliana protein match is: AWPM-19-like family protein (TAIR:AT5G46530.1)%3B Has 177 Blast hits to 177 proteins in 19 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 177%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16146321, PMID:16412086, PMID:20736450, locus:2197823; locus_type=protein_coding
AT1G04570.1	chr1:001246859	0.0	C/1246859-1248003,1248117-1248600	AT1G04570.1 CDS AT1G04570 ID=AT1G04570.1; Parent=AT1G04570; Name=AT1G04570.1; Note=Major facilitator superfamily protein; conf_class=1; computational_description=Major facilitator superfamily protein%3B FUNCTIONS IN: transporter activity%3B INVOLVED IN: transport%3B LOCATED IN: chloroplast%2C membrane%3B CONTAINS InterPro DOMAIN/s: Biopterin transport-related protein BT1 (InterPro:IPR004324)%2C Major facilitator superfamily%2C general substrate transporter (InterPro:IPR016196)%3B BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT2G33280.1)%3B Has 816 Blast hits to 814 proteins in 271 species: Archae - 6%3B Bacteria - 387%3B Metazoa - 0%3B Fungi - 18%3B Plants - 232%3B Viruses - 0%3B Other Eukaryotes - 173 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14576160, PMID:14996221, PMID:15341633, PMID:16055441, PMID:16162503, PMID:16463051, PMID:17919328, PMID:20736450, locus:2197803; locus_type=protein_coding
AT1G04570.2	chr1:001246859	0.0	C/1246859-1247992,1248117-1248167	AT1G04570.2 CDS AT1G04570 ID=AT1G04570.2; Parent=AT1G04570; Name=AT1G04570.2; Note=Major facilitator superfamily protein; computational_description=Major facilitator superfamily protein%3B FUNCTIONS IN: transporter activity%3B INVOLVED IN: transport%3B LOCATED IN: chloroplast%2C membrane%3B CONTAINS InterPro DOMAIN/s: Biopterin transport-related protein BT1 (InterPro:IPR004324)%2C Major facilitator superfamily%2C general substrate transporter (InterPro:IPR016196)%3B BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT2G33280.1)%3B Has 816 Blast hits to 814 proteins in 271 species: Archae - 6%3B Bacteria - 387%3B Metazoa - 0%3B Fungi - 18%3B Plants - 232%3B Viruses - 0%3B Other Eukaryotes - 173 (source: NCBI BLink).; Dbxref=PMID:14576160, PMID:14996221, PMID:15341633, PMID:16055441, PMID:16162503, PMID:16463051, PMID:17919328, PMID:20736450, locus:2197803; locus_type=protein_coding
AT1G08855.1	chr1:001249571	0.0	C/1249571-1251648	AT1G08855.1 transcript_region AT1G08855 ID=AT1G08855.1; Parent=AT1G08855; computational_description=novel transcribed region; Name=AT1G08855.1; locus_type=novel_transcribed_region
AT1G08855.2	chr1:001251045	0.0	C/1251045-1251697	AT1G08855.2 transcript_region AT1G08855 ID=AT1G08855.2; Parent=AT1G08855; computational_description=novel transcribed region; Name=AT1G08855.2; locus_type=novel_transcribed_region
AT1TE04080	chr1:001251630	0.0	C/1251630-1251772	AT1TE04080 transposable_element AT1TE04080 ID=AT1TE04080; Name=AT1TE04080; Alias=ATREP12
AT1G04580.1	chr1:001252212	0.0	C/1252212-1252441,1252542-1252731,1252827-1252925,1253012-1253107,1253182-1254147,1254220-1254438,1254541-1254750,1254866-1255125,1255277-1256884,1257375-1257510	AT1G04580.1 CDS AT1G04580 ID=AT1G04580.1; Parent=AT1G04580; Name=AT1G04580.1; Note=aldehyde oxidase 4; curator_summary=Encodes aldehyde oxidase AAO4 preferentially expressed in developing seeds.; conf_class=2; symbol=AO4; Alias=AAO4, aldehyde oxidase 4, ATAO-4, arabdopsis thaliana aldehyde oxidase 4, ATAO2, ALDEHYDE OXIDASE 2; full_name=aldehyde oxidase 4; computational_description=aldehyde oxidase 4 (AO4)%3B CONTAINS InterPro DOMAIN/s: Aldehyde oxidase/xanthine dehydrogenase (InterPro:IPR016208)%2C Ferredoxin (InterPro:IPR001041)%2C Molybdopterin dehydrogenase%2C FAD-binding (InterPro:IPR002346)%2C Beta-grasp fold%2C ferredoxin-type (InterPro:IPR012675)%2C [2Fe-2S]-binding (InterPro:IPR002888)%2C FAD-binding%2C type 2 (InterPro:IPR016166)%2C CO dehydrogenase flavoprotein%2C C-terminal (InterPro:IPR005107)%2C 2Fe-2S ferredoxin%2C iron-sulphur binding site (InterPro:IPR006058)%2C CO dehydrogenase flavoprotein-like%2C FAD-binding%2C subdomain 2 (InterPro:IPR016169)%2C Aldehyde oxidase/xanthine dehydrogenase%2C a/b hammerhead (InterPro:IPR000674)%2C Aldehyde oxidase/xanthine dehydrogenase%2C molybdopterin binding (InterPro:IPR008274)%3B BEST Arabidopsis thaliana protein match is: abscisic aldehyde oxidase 3 (TAIR:AT2G27150.2)%3B Has 17858 Blast hits to 17128 proteins in 1274 species: Archae - 410%3B Bacteria - 10596%3B Metazoa - 1017%3B Fungi - 119%3B Plants - 281%3B Viruses - 0%3B Other Eukaryotes - 5435 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9655945, PMID:9615466, PMID:11841660, PMID:14996221, PMID:15574845, PMID:19297586, PMID:20736450, locus:2197798; locus_type=protein_coding
AT1G04590.1	chr1:001258760	0.0	C/1258760-1258899,1259027-1259219,1259358-1259570,1259728-1259871,1260012-1260125,1260525-1260626,1260746-1260806,1260942-1260978,1261270-1261411	AT1G04590.1 CDS AT1G04590 ID=AT1G04590.1; Parent=AT1G04590; Name=AT1G04590.1; Note=PPR containing-like protein; conf_class=2; computational_description=BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G21190.1)%3B Has 111 Blast hits to 111 proteins in 15 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 109%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15266054, PMID:16531467, PMID:22589469, locus:2197783; locus_type=protein_coding
AT1G04590.2	chr1:001258760	0.0	C/1258760-1258899,1259027-1259228,1259358-1259570,1259728-1259871,1260012-1260125,1260525-1260626,1260746-1260806,1260942-1260978,1261270-1261411	AT1G04590.2 CDS AT1G04590 ID=AT1G04590.2; Parent=AT1G04590; Name=AT1G04590.2; Note=PPR containing-like protein; conf_class=2; computational_description=BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G21190.1)%3B Has 111 Blast hits to 111 proteins in 15 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 109%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15266054, PMID:16531467, PMID:22589469, locus:2197783; locus_type=protein_coding
AT1G04600.1	chr1:001262123	0.0	W/1262123-1262125,1262556-1262681,1262897-1263040,1263175-1263320,1263412-1263568,1263681-1263739,1263833-1263992,1264094-1264243,1264310-1264446,1264533-1264679,1264760-1264861,1265159-1265216,1265291-1265392,1265492-1265529,1265614-1265740,1265823-1265993,1266077-1266208,1266314-1266423,1266552-1266612,1266815-1266992,1267076-1267281,1267395-1267514,1267771-1267869,1267996-1268283,1268406-1268558,1268673-1268822,1268940-1269104,1269192-1269331,1269452-1269566,1269645-1269665,1269771-1269848,1269937-1270107,1270272-1270424,1270572-1270748,1270841-1271131,1271199-1271269,1271367-1271466,1271543-1271599,1271678-1271734,1271941-1272021,1272101-1272177,1272262-1272376	AT1G04600.1 CDS AT1G04600 ID=AT1G04600.1; Parent=AT1G04600; Name=AT1G04600.1; Note=myosin XI A; curator_summary=member of Myosin-like proteins; conf_class=6; symbol=XIA; Alias=ATXIA; full_name=myosin XI A; computational_description=myosin XI A (XIA)%3B FUNCTIONS IN: motor activity%3B INVOLVED IN: actin filament-based movement%3B LOCATED IN: myosin complex%3B EXPRESSED IN: 18 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444)%2C Dilute (InterPro:IPR002710)%2C Prefoldin (InterPro:IPR009053)%2C Myosin%2C N-terminal%2C SH3-like (InterPro:IPR004009)%2C Myosin head%2C motor domain (InterPro:IPR001609)%2C IQ calmodulin-binding region (InterPro:IPR000048)%3B BEST Arabidopsis thaliana protein match is: myosin XI D (TAIR:AT2G33240.1)%3B Has 140144 Blast hits to 79260 proteins in 3527 species: Archae - 2295%3B Bacteria - 25176%3B Metazoa - 58445%3B Fungi - 12073%3B Plants - 6566%3B Viruses - 744%3B Other Eukaryotes - 34845 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:11516337, PMID:15792961, PMID:18178669, PMID:18598361, PMID:18775970, PMID:18772308, PMID:20736450, locus:2197773; locus_type=protein_coding
AT1TE04160	chr1:001275327	0.0	C/1275327-1275794	AT1TE04160 transposable_element AT1TE04160 ID=AT1TE04160; Name=AT1TE04160; Alias=ATREP7
AT1TE04165	chr1:001275795	0.0	C/1275795-1276621	AT1TE04165 transposable_element AT1TE04165 ID=AT1TE04165; Name=AT1TE04165; Alias=ATREP7
AT1TE04170	chr1:001276623	0.0	C/1276623-1276966	AT1TE04170 transposable_element AT1TE04170 ID=AT1TE04170; Name=AT1TE04170; Alias=ATREP6
AT1G04610.1	chr1:001279524	0.0	W/1279524-1280237,1280400-1280771,1281104-1281331	AT1G04610.1 CDS AT1G04610 ID=AT1G04610.1; Parent=AT1G04610; Name=AT1G04610.1; Note=YUCCA 3; conf_class=1; symbol=YUC3; full_name=YUCCA 3; computational_description=YUCCA 3 (YUC3)%3B FUNCTIONS IN: NADP or NADPH binding%2C oxidoreductase activity%2C FAD binding%2C flavin-containing monooxygenase activity%3B INVOLVED IN: auxin biosynthetic process%3B EXPRESSED IN: 11 plant structures%3B EXPRESSED DURING: 4 anthesis%2C C globular stage%2C petal differentiation and expansion stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: Pyridine nucleotide-disulphide oxidoreductase%2C class-II (InterPro:IPR000103)%2C FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027)%2C Flavin-containing monooxygenase-like (InterPro:IPR020946)%3B BEST Arabidopsis thaliana protein match is: YUCCA 7 (TAIR:AT2G33230.1)%3B Has 9657 Blast hits to 9637 proteins in 1196 species: Archae - 33%3B Bacteria - 4899%3B Metazoa - 784%3B Fungi - 1494%3B Plants - 670%3B Viruses - 0%3B Other Eukaryotes - 1777 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11209081, PMID:12119417, PMID:12007405, PMID:14576160, PMID:16126863, PMID:18775970, PMID:20736450, PMID:21450938, PMID:24562917, locus:2197863; locus_type=protein_coding
AT1G04620.1	chr1:001282869	0.0	C/1282869-1282959,1283068-1283162,1283258-1283322,1283483-1283540,1283639-1283708,1283794-1283873,1283969-1283996,1284101-1284162,1284243-1284278,1284356-1284453,1284628-1284690,1284790-1284841,1284926-1285004,1285139-1285180,1285285-1285369,1285516-1285627,1285719-1285803,1285896-1286001,1286411-1286492	AT1G04620.1 CDS AT1G04620 ID=AT1G04620.1; Parent=AT1G04620; Name=AT1G04620.1; Note=coenzyme F420 hydrogenase family / dehydrogenase%2C beta subunit family; curator_summary=Encodes a 7-hydroxymethyl chlorophyll a reductase%2C an enzyme of the chlorophyll cycle that converts 7-hydroxymethyl chlorophyll a to chlorophyll a.; conf_class=2; symbol=HCAR; full_name=7-hydroxymethyl chlorophyll a (HMChl) reductase; computational_description=coenzyme F420 hydrogenase family / dehydrogenase%2C beta subunit family%3B FUNCTIONS IN: coenzyme F420 hydrogenase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Coenzyme F420 hydrogenase/dehydrogenase beta subunit%2C C-terminal (InterPro:IPR007525)%2C Coenzyme F420 hydrogenase/dehydrogenase beta subunit%2C N-terminal (InterPro:IPR007516)%3B Has 499 Blast hits to 498 proteins in 165 species: Archae - 202%3B Bacteria - 188%3B Metazoa - 0%3B Fungi - 0%3B Plants - 41%3B Viruses - 0%3B Other Eukaryotes - 68 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:21934147, PMID:23200839, locus:2197848; locus_type=protein_coding
AT1TE04200	chr1:001286382	0.0	C/1286382-1286558	AT1TE04200 transposable_element AT1TE04200 ID=AT1TE04200; Name=AT1TE04200; Alias=ATENSPM1A
AT1TE04205	chr1:001286663	0.0	W/1286663-1287069	AT1TE04205 transposable_element AT1TE04205 ID=AT1TE04205; Name=AT1TE04205; Alias=ATREP5
AT1G04625.1	chr1:001287831	0.0	C/1287831-1287920,1288232-1288788,1289694-1289820	AT1G04625.1 CDS AT1G04625 ID=AT1G04625.1; Parent=AT1G04625; Name=AT1G04625.1; Note=Polynucleotidyl transferase%2C ribonuclease H-like superfamily protein; conf_class=4; computational_description=Polynucleotidyl transferase%2C ribonuclease H-like superfamily protein%3B FUNCTIONS IN: nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase%2C ribonuclease H fold (InterPro:IPR012337)%3B BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase%2C ribonuclease H-like superfamily protein (TAIR:AT2G46460.1)%3B Has 296 Blast hits to 296 proteins in 17 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 0%3B Fungi - 0%3B Plants - 291%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; conf_rating=***; Dbxref=locus:1006230762; locus_type=protein_coding
AT1G04630.1	chr1:001289921	0.0	C/1289921-1290065,1290152-1290223,1290772-1290986	AT1G04630.1 CDS AT1G04630 ID=AT1G04630.1; Parent=AT1G04630; Name=AT1G04630.1; Note=GRIM-19 protein; conf_class=2; symbol=MEE4; full_name=maternal effect embryo arrest 4; computational_description=maternal effect embryo arrest 4 (MEE4)%3B CONTAINS InterPro DOMAIN/s: GRIM-19 (InterPro:IPR009346)%3B BEST Arabidopsis thaliana protein match is: GRIM-19 protein (TAIR:AT2G33220.1)%3B Has 332 Blast hits to 332 proteins in 145 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 162%3B Fungi - 83%3B Plants - 65%3B Viruses - 0%3B Other Eukaryotes - 22 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11115874, PMID:14671022, PMID:15634699, PMID:16407270, PMID:17660356, PMID:18189341, PMID:20736450, PMID:21167537, PMID:22378782, locus:2197833; locus_type=protein_coding
AT1G04635.1	chr1:001291350	0.0	W/1291350-1291805	AT1G04635.1 CDS AT1G04635 ID=AT1G04635.1; Parent=AT1G04635; Name=AT1G04635.1; Note=ribonuclease P family protein / Rpp14 family protein; conf_class=1; symbol=EMB1687; Alias=AtPOP5, POP5, A. thaliana homolog of yeast POP5; full_name=EMBRYO DEFECTIVE 1687; computational_description=EMBRYO DEFECTIVE 1687 (EMB1687)%3B FUNCTIONS IN: ribonuclease activity%2C ribonuclease P activity%3B INVOLVED IN: tRNA processing%2C embryo development ending in seed dormancy%3B LOCATED IN: vacuole%3B CONTAINS InterPro DOMAIN/s: Ribonuclease P-related (InterPro:IPR002759)%3B Has 266 Blast hits to 266 proteins in 135 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 85%3B Fungi - 108%3B Plants - 56%3B Viruses - 0%3B Other Eukaryotes - 17 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:22509260, locus:504956160; locus_type=protein_coding
AT1G04640.1	chr1:001292541	0.0	W/1292541-1293248	AT1G04640.1 CDS AT1G04640 ID=AT1G04640.1; Parent=AT1G04640; Name=AT1G04640.1; Note=lipoyltransferase 2; curator_summary=Lipoyltransferase%2C located in mitochondria but not found in chloroplasts; conf_class=2; symbol=LIP2; full_name=lipoyltransferase 2; computational_description=lipoyltransferase 2 (LIP2)%3B CONTAINS InterPro DOMAIN/s: Octanoyltransferase (InterPro:IPR000544)%2C Octanoyltransferase%2C conserved site (InterPro:IPR020605)%2C Biotin/lipoate A/B protein ligase (InterPro:IPR004143)%3B BEST Arabidopsis thaliana protein match is: Biotin/lipoate A/B protein ligase family (TAIR:AT4G31050.1)%3B Has 5700 Blast hits to 5697 proteins in 1675 species: Archae - 17%3B Bacteria - 3180%3B Metazoa - 102%3B Fungi - 137%3B Plants - 98%3B Viruses - 0%3B Other Eukaryotes - 2166 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11427685, PMID:15923325, PMID:23505340, locus:2197818; locus_type=protein_coding
AT1G04640.2	chr1:001292541	0.0	W/1292541-1293248	AT1G04640.2 CDS AT1G04640 ID=AT1G04640.2; Parent=AT1G04640; Name=AT1G04640.2; Note=lipoyltransferase 2; curator_summary=Lipoyltransferase%2C located in mitochondria but not found in chloroplasts; conf_class=1; symbol=LIP2; full_name=lipoyltransferase 2; computational_description=lipoyltransferase 2 (LIP2)%3B CONTAINS InterPro DOMAIN/s: Octanoyltransferase (InterPro:IPR000544)%2C Octanoyltransferase%2C conserved site (InterPro:IPR020605)%2C Biotin/lipoate A/B protein ligase (InterPro:IPR004143)%3B BEST Arabidopsis thaliana protein match is: Biotin/lipoate A/B protein ligase family (TAIR:AT4G31050.1)%3B Has 5700 Blast hits to 5697 proteins in 1675 species: Archae - 17%3B Bacteria - 3180%3B Metazoa - 102%3B Fungi - 137%3B Plants - 98%3B Viruses - 0%3B Other Eukaryotes - 2166 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11427685, PMID:15923325, PMID:23505340, locus:2197818; locus_type=protein_coding
AT1TE04220	chr1:001293504	0.0	W/1293504-1293596	AT1TE04220 transposable_element AT1TE04220 ID=AT1TE04220; Name=AT1TE04220; Alias=SIMPLEHAT2
AT1G04645.1	chr1:001293853	0.0	C/1293853-1294239	AT1G04645.1 CDS AT1G04645 ID=AT1G04645.1; Parent=AT1G04645; Name=AT1G04645.1; Note=Plant self-incompatibility protein S1 family; conf_class=1; computational_description=Plant self-incompatibility protein S1 family%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 6 plant structures%3B EXPRESSED DURING: 4 anthesis%2C C globular stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%3B CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264)%3B BEST Arabidopsis thaliana protein match is: Plant self-incompatibility protein S1 family (TAIR:AT4G24974.1)%3B Has 360 Blast hits to 349 proteins in 15 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 360%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16299181, locus:505006099; locus_type=protein_coding
AT1G04650.1	chr1:001294893	0.0	C/1294893-1295775,1295941-1297535,1297706-1297855,1297945-1298034,1298122-1298256,1298471-1298563,1298856-1298903	AT1G04650.1 CDS AT1G04650 ID=AT1G04650.1; Parent=AT1G04650; Name=AT1G04650.1; Note=holliday junction resolvase; conf_class=2; computational_description=unknown protein%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11115874, PMID:16951057, PMID:20736450, locus:2197858; locus_type=protein_coding
AT1G04650.2	chr1:001294893	0.0	C/1294893-1295775,1295941-1297535,1297706-1297855,1297945-1298004	AT1G04650.2 CDS AT1G04650 ID=AT1G04650.2; Parent=AT1G04650; Name=AT1G04650.2; Note=holliday junction resolvase; computational_description=unknown protein%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=PMID:11115874, PMID:16951057, PMID:20736450, locus:2197858; locus_type=protein_coding
AT1G04283.1	chr1:001299553	0.0	W/1299553-1299796	AT1G04283.1 lnc_RNA AT1G04283 ID=AT1G04283.1; Parent=AT1G04283; Name=AT1G04283.1; locus_type=long_noncoding_rna
AT1G04660.1	chr1:001300668	0.0	C/1300668-1301306	AT1G04660.1 CDS AT1G04660 ID=AT1G04660.1; Parent=AT1G04660; Name=AT1G04660.1; Note=glycine-rich protein; conf_class=1; computational_description=glycine-rich protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 8 plant structures%3B EXPRESSED DURING: 4 anthesis%2C F mature embryo stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%2C D bilateral stage%3B Has 360 Blast hits to 349 proteins in 15 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 360%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15805490, PMID:20736450, locus:2197843; locus_type=protein_coding
AT1G04670.1	chr1:001301985	0.0	W/1301985-1302089,1302161-1302286,1302383-1302532	AT1G04670.1 CDS AT1G04670 ID=AT1G04670.1; Parent=AT1G04670; Name=AT1G04670.1; Note=hypothetical protein; conf_class=2; computational_description=unknown protein%3B Has 40 Blast hits to 40 proteins in 14 species: Archae - 2%3B Bacteria - 5%3B Metazoa - 1%3B Fungi - 2%3B Plants - 30%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, locus:2197828; locus_type=protein_coding
AT1G04680.1	chr1:001304052	0.0	C/1304052-1304279,1304373-1304511,1304621-1304724,1304823-1305465,1306792-1306872,1307680-1307780	AT1G04680.1 CDS AT1G04680 ID=AT1G04680.1; Parent=AT1G04680; Name=AT1G04680.1; Note=Pectin lyase-like superfamily protein; conf_class=2; computational_description=Pectin lyase-like superfamily protein%3B FUNCTIONS IN: lyase activity%2C pectate lyase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050)%2C AmbAllergen (InterPro:IPR018082)%2C Pectate lyase/Amb allergen (InterPro:IPR002022)%2C Pectin lyase fold (InterPro:IPR012334)%3B BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT4G13710.1)%3B Has 1635 Blast hits to 1625 proteins in 268 species: Archae - 0%3B Bacteria - 682%3B Metazoa - 0%3B Fungi - 239%3B Plants - 706%3B Viruses - 0%3B Other Eukaryotes - 8 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12169696, PMID:12805628, PMID:14759260, PMID:15047898, PMID:16553896, PMID:16621846, PMID:17497164, PMID:17496105, PMID:18650403, PMID:18805951, PMID:20649977, PMID:20736450, PMID:23148892, locus:2197808; locus_type=protein_coding
AT1G04690.1	chr1:001313662	0.0	W/1313662-1314029,1314464-1314659,1314780-1314923,1315041-1315205,1315307-1315420	AT1G04690.1 CDS AT1G04690 ID=AT1G04690.1; Parent=AT1G04690; Name=AT1G04690.1; Note=potassium channel beta subunit 1; conf_class=2; symbol=KAB1; Alias=KV-BETA1; full_name=potassium channel beta subunit 1; computational_description=potassium channel beta subunit 1 (KAB1)%3B FUNCTIONS IN: oxidoreductase activity%2C potassium channel activity%3B INVOLVED IN: oxidation reduction%2C potassium ion transport%2C transmembrane transport%3B LOCATED IN: plasma membrane%2C membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395)%2C Potassium channel%2C voltage-dependent%2C beta subunit%2C KCNAB-related (InterPro:IPR005399)%3B BEST Arabidopsis thaliana protein match is: NAD(P)-linked oxidoreductase superfamily protein (TAIR:AT1G60690.1)%3B Has 29181 Blast hits to 29146 proteins in 2493 species: Archae - 642%3B Bacteria - 19972%3B Metazoa - 899%3B Fungi - 1968%3B Plants - 978%3B Viruses - 0%3B Other Eukaryotes - 4722 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9687064, PMID:8837508, PMID:7480329, PMID:12169696, PMID:16460505, PMID:20118269, locus:2197793; locus_type=protein_coding
AT1G04700.1	chr1:001316919	0.0	W/1316919-1318787,1318867-1319187,1319285-1319524,1319605-1319768,1319852-1319999,1320088-1320210,1320286-1320373,1320478-1320653	AT1G04700.1 CDS AT1G04700 ID=AT1G04700.1; Parent=AT1G04700; Name=AT1G04700.1; Note=PB1 domain-containing protein tyrosine kinase; conf_class=4; computational_description=PB1 domain-containing protein tyrosine kinase%3B FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity%2C protein kinase activity%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: cytosol%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270)%2C Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (TAIR:AT3G24715.1)%3B Has 117644 Blast hits to 116217 proteins in 4946 species: Archae - 115%3B Bacteria - 12372%3B Metazoa - 45570%3B Fungi - 9947%3B Plants - 31841%3B Viruses - 450%3B Other Eukaryotes - 17349 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:12119167, PMID:14500793, PMID:16291648, PMID:16429265, PMID:18433157, PMID:18775970, PMID:20736450, PMID:21838868, PMID:22253603, locus:2197788; locus_type=protein_coding
AT1G04700.2	chr1:001316919	0.0	W/1316919-1318787,1318867-1319187,1319285-1319524,1319605-1319768,1319852-1319999,1320088-1320210,1320286-1320373,1320478-1320653	AT1G04700.2 CDS AT1G04700 ID=AT1G04700.2; Parent=AT1G04700; Name=AT1G04700.2; Note=PB1 domain-containing protein tyrosine kinase; Dbxref=PMID:12119167, PMID:14500793, PMID:16291648, PMID:16429265, PMID:18433157, PMID:18775970, PMID:20736450, PMID:21838868, PMID:22253603, locus:2197788; computational_description=PB1 domain-containing protein tyrosine kinase%3B FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity%2C protein kinase activity%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: cytosol%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270)%2C Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (TAIR:AT3G24715.1)%3B Has 117644 Blast hits to 116217 proteins in 4946 species: Archae - 115%3B Bacteria - 12372%3B Metazoa - 45570%3B Fungi - 9947%3B Plants - 31841%3B Viruses - 450%3B Other Eukaryotes - 17349 (source: NCBI BLink).; locus_type=protein_coding
AT1G04700.3	chr1:001316919	0.0	W/1316919-1318787,1318867-1319187,1319285-1319524,1319605-1319768,1319852-1320026	AT1G04700.3 CDS AT1G04700 ID=AT1G04700.3; Parent=AT1G04700; Name=AT1G04700.3; Note=PB1 domain-containing protein tyrosine kinase; computational_description=PB1 domain-containing protein tyrosine kinase%3B FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity%2C protein kinase activity%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: cytosol%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270)%2C Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (TAIR:AT3G24715.1)%3B Has 117644 Blast hits to 116217 proteins in 4946 species: Archae - 115%3B Bacteria - 12372%3B Metazoa - 45570%3B Fungi - 9947%3B Plants - 31841%3B Viruses - 450%3B Other Eukaryotes - 17349 (source: NCBI BLink).; Dbxref=PMID:12119167, PMID:14500793, PMID:16291648, PMID:16429265, PMID:18433157, PMID:18775970, PMID:20736450, PMID:21838868, PMID:22253603, locus:2197788; locus_type=protein_coding
AT1G04710.1	chr1:001321941	0.0	W/1321941-1322018,1322257-1322321,1322407-1322491,1322573-1322699,1322788-1322886,1322967-1323034,1323132-1323239,1323323-1323400,1323506-1323638,1323732-1323828,1323905-1324028,1324134-1324242,1324308-1324391,1324480-1324556	AT1G04710.1 CDS AT1G04710 ID=AT1G04710.1; Parent=AT1G04710; Name=AT1G04710.1; Note=peroxisomal 3-ketoacyl-CoA thiolase 4; curator_summary=EC2.3.1.16 thiolase. Its transcript levels change after inducing MUTE expression in a mute background.; conf_class=2; symbol=PKT4; Alias=KAT1, 3-KETO-ACYL-COA THIOLASE 1; full_name=peroxisomal 3-ketoacyl-CoA thiolase 4; computational_description=peroxisomal 3-ketoacyl-CoA thiolase 4 (PKT4)%3B FUNCTIONS IN: transferase activity%2C transferring acyl groups other than amino-acyl groups%2C catalytic activity%2C acetyl-CoA C-acyltransferase activity%3B INVOLVED IN: catechol catabolic process%2C ortho-cleavage%2C protocatechuate catabolic process%2C ortho-cleavage%2C metabolic process%2C fatty acid oxidation%3B LOCATED IN: peroxisome%2C vacuole%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Thiolase (InterPro:IPR002155)%2C Thiolase%2C active site (InterPro:IPR020610)%2C Thiolase%2C N-terminal (InterPro:IPR020616)%2C Thiolase%2C conserved site (InterPro:IPR020613)%2C Thiolase%2C C-terminal (InterPro:IPR020617)%2C Thiolase-like%2C subgroup (InterPro:IPR016038)%2C Thiolase-like (InterPro:IPR016039)%2C Thiolase%2C acyl-enzyme intermediate active site (InterPro:IPR020615)%3B BEST Arabidopsis thaliana protein match is: peroxisomal 3-ketoacyl-CoA thiolase 3 (TAIR:AT2G33150.1)%3B Has 22406 Blast hits to 22392 proteins in 2262 species: Archae - 405%3B Bacteria - 14105%3B Metazoa - 1004%3B Fungi - 662%3B Plants - 281%3B Viruses - 0%3B Other Eukaryotes - 5949 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12644654, PMID:17951448, PMID:19043666, PMID:20736450, PMID:22115780, PMID:23066143, PMID:23505340, PMID:23662679, PMID:25297549, locus:2197778; locus_type=protein_coding
AT1G04720.1	chr1:001324923	0.0	W/1324923-1325007	AT1G04720.1 tRNA AT1G04720 ID=AT1G04720.1; Parent=AT1G04720; Note=tRNA-Met; computational_description=tRNA-Met (anticodon: CAT); Dbxref=PMID:8980477, PMID:23066098, PMID:8980477, locus:3692162; Name=AT1G04720.1; locus_type=pre_trna
AT1G04730.1	chr1:001325385	0.0	C/1325385-1325438,1325590-1325689,1325855-1326093,1326194-1326253,1326340-1326531,1326637-1326790,1326880-1326967,1327044-1327122,1327225-1327306,1327394-1327491,1327572-1327640,1327837-1327904,1328034-1328107,1328457-1328501,1328722-1328882,1329148-1329213,1329319-1329420,1329559-1329645,1329764-1330036,1330147-1330346,1330474-1330607,1330680-1331086	AT1G04730.1 CDS AT1G04730 ID=AT1G04730.1; Parent=AT1G04730; Name=AT1G04730.1; Note=P-loop containing nucleoside triphosphate hydrolases superfamily protein; curator_summary=Necessary for sister chromatid cohesion. Acts in synergy with ETG1.; conf_class=3; symbol=CTF18; full_name=CHROMOSOME TRANSMISSION FIDELITY 18; computational_description=CHROMOSOME TRANSMISSION FIDELITY 18 (CTF18)%3B FUNCTIONS IN: nucleoside-triphosphatase activity%2C ATPase activity%2C nucleotide binding%2C ATP binding%3B INVOLVED IN: sister chromatid cohesion%3B LOCATED IN: replication fork%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C ATPase%2C AAA-type%2C core (InterPro:IPR003959)%3B BEST Arabidopsis thaliana protein match is: replication factor C1 (TAIR:AT5G22010.1)%3B Has 4018 Blast hits to 4006 proteins in 709 species: Archae - 400%3B Bacteria - 666%3B Metazoa - 673%3B Fungi - 766%3B Plants - 379%3B Viruses - 21%3B Other Eukaryotes - 1113 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16126853, PMID:17675552, PMID:20090939, PMID:20736450, locus:2197853; locus_type=protein_coding
AT1G04730.2	chr1:001325385	0.0	C/1325385-1325438,1325590-1325689,1325855-1326093,1326194-1326253,1326340-1326531,1326637-1326790,1326880-1326967,1327044-1327122,1327225-1327306,1327394-1327491,1327572-1327640,1327837-1327904,1328034-1328107,1328457-1328501,1328722-1328882,1329148-1329213,1329319-1329420,1329559-1329645,1329764-1330036,1330147-1330227	AT1G04730.2 CDS AT1G04730 ID=AT1G04730.2; Parent=AT1G04730; Name=AT1G04730.2; Note=P-loop containing nucleoside triphosphate hydrolases superfamily protein; symbol=CTF18; full_name=CHROMOSOME TRANSMISSION FIDELITY 18; curator_summary=Necessary for sister chromatid cohesion. Acts in synergy with ETG1.; computational_description=CHROMOSOME TRANSMISSION FIDELITY 18 (CTF18)%3B FUNCTIONS IN: nucleoside-triphosphatase activity%2C ATPase activity%2C nucleotide binding%2C ATP binding%3B INVOLVED IN: sister chromatid cohesion%3B LOCATED IN: replication fork%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C ATPase%2C AAA-type%2C core (InterPro:IPR003959)%3B BEST Arabidopsis thaliana protein match is: replication factor C1 (TAIR:AT5G22010.1)%3B Has 4018 Blast hits to 4006 proteins in 709 species: Archae - 400%3B Bacteria - 666%3B Metazoa - 673%3B Fungi - 766%3B Plants - 379%3B Viruses - 21%3B Other Eukaryotes - 1113 (source: NCBI BLink).; Dbxref=PMID:16126853, PMID:17675552, PMID:20090939, PMID:20736450, locus:2197853; locus_type=protein_coding
AT1G04730.3	chr1:001325385	0.0	C/1325385-1325438,1325590-1325689,1325855-1326093,1326194-1326253,1326340-1326531,1326637-1326790,1326880-1326967,1327044-1327122,1327225-1327306,1327394-1327491,1327572-1327640,1327837-1327904,1328034-1328107,1328457-1328501,1328722-1328882,1329148-1329213,1329319-1329420,1329559-1329645,1329764-1330036,1330147-1330227	AT1G04730.3 CDS AT1G04730 ID=AT1G04730.3; Parent=AT1G04730; Name=AT1G04730.3; Note=P-loop containing nucleoside triphosphate hydrolases superfamily protein; symbol=CTF18; full_name=CHROMOSOME TRANSMISSION FIDELITY 18; curator_summary=Necessary for sister chromatid cohesion. Acts in synergy with ETG1.; computational_description=CHROMOSOME TRANSMISSION FIDELITY 18 (CTF18)%3B FUNCTIONS IN: nucleoside-triphosphatase activity%2C ATPase activity%2C nucleotide binding%2C ATP binding%3B INVOLVED IN: sister chromatid cohesion%3B LOCATED IN: replication fork%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C ATPase%2C AAA-type%2C core (InterPro:IPR003959)%3B BEST Arabidopsis thaliana protein match is: replication factor C1 (TAIR:AT5G22010.1)%3B Has 4018 Blast hits to 4006 proteins in 709 species: Archae - 400%3B Bacteria - 666%3B Metazoa - 673%3B Fungi - 766%3B Plants - 379%3B Viruses - 21%3B Other Eukaryotes - 1113 (source: NCBI BLink).; Dbxref=PMID:16126853, PMID:17675552, PMID:20090939, PMID:20736450, locus:2197853; locus_type=protein_coding
AT1G04730.4	chr1:001325385	0.0	C/1325385-1325438,1325590-1325689,1325855-1326093,1326194-1326253,1326340-1326531,1326637-1326790,1326880-1326967,1327044-1327122,1327225-1327306,1327394-1327491,1327572-1327640,1327837-1327904,1328034-1328107,1328457-1328501,1328722-1328882,1329148-1329213,1329319-1329420,1329559-1329645,1329764-1330036,1330147-1330227	AT1G04730.4 CDS AT1G04730 ID=AT1G04730.4; Parent=AT1G04730; Name=AT1G04730.4; Note=P-loop containing nucleoside triphosphate hydrolases superfamily protein; symbol=CTF18; full_name=CHROMOSOME TRANSMISSION FIDELITY 18; curator_summary=Necessary for sister chromatid cohesion. Acts in synergy with ETG1.; computational_description=CHROMOSOME TRANSMISSION FIDELITY 18 (CTF18)%3B FUNCTIONS IN: nucleoside-triphosphatase activity%2C ATPase activity%2C nucleotide binding%2C ATP binding%3B INVOLVED IN: sister chromatid cohesion%3B LOCATED IN: replication fork%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C ATPase%2C AAA-type%2C core (InterPro:IPR003959)%3B BEST Arabidopsis thaliana protein match is: replication factor C1 (TAIR:AT5G22010.1)%3B Has 4018 Blast hits to 4006 proteins in 709 species: Archae - 400%3B Bacteria - 666%3B Metazoa - 673%3B Fungi - 766%3B Plants - 379%3B Viruses - 21%3B Other Eukaryotes - 1113 (source: NCBI BLink).; Dbxref=PMID:16126853, PMID:17675552, PMID:20090939, PMID:20736450, locus:2197853; locus_type=protein_coding
AT1G04750.1	chr1:001331857	0.0	C/1331857-1332000,1332137-1332199,1332389-1332509,1332589-1332730,1333237-1333426	AT1G04750.1 CDS AT1G04750 ID=AT1G04750.1; Parent=AT1G04750; Name=AT1G04750.1; Note=vesicle-associated membrane protein 721; curator_summary=Encodes vesicle-associated membrane protein 7B (VAMP7B%2C or VAMP721). Required for cell plate formation.; conf_class=2; symbol=VAMP721; Alias=AT VAMP7B, ATVAMP721, VAMP7B, VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B; full_name=vesicle-associated membrane protein 721; computational_description=vesicle-associated membrane protein 721 (VAMP721)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: transport%2C vesicle-mediated transport%3B LOCATED IN: endosome%2C plasma membrane%2C membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908)%2C Longin-like (InterPro:IPR011012)%2C Synaptobrevin (InterPro:IPR001388)%3B BEST Arabidopsis thaliana protein match is: synaptobrevin-related protein 1 (TAIR:AT2G33120.1)%3B Has 2472 Blast hits to 2471 proteins in 261 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 997%3B Fungi - 453%3B Plants - 611%3B Viruses - 0%3B Other Eukaryotes - 411 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15342965, PMID:15876431, PMID:17660356, PMID:18678865, PMID:18775970, PMID:18273019, PMID:20736450, PMID:21098265, PMID:21051940, PMID:22022536, PMID:22974509, PMID:23218542, PMID:23283982, PMID:23515225, PMID:23572542, PMID:23661365, PMID:24642714, locus:2010642; locus_type=protein_coding
AT1G04750.2	chr1:001331857	0.0	C/1331857-1332000,1332137-1332199,1332389-1332509,1332589-1332686	AT1G04750.2 CDS AT1G04750 ID=AT1G04750.2; Parent=AT1G04750; Name=AT1G04750.2; Note=vesicle-associated membrane protein 721; curator_summary=Encodes vesicle-associated membrane protein 7B (VAMP7B%2C or VAMP721). Required for cell plate formation.; conf_class=2; symbol=VAMP721; Alias=AT VAMP7B, ATVAMP721, VAMP7B, VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B; full_name=vesicle-associated membrane protein 721; computational_description=vesicle-associated membrane protein 721 (VAMP721)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: transport%2C vesicle-mediated transport%3B LOCATED IN: endosome%2C plasma membrane%2C membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908)%2C Longin-like (InterPro:IPR011012)%2C Synaptobrevin (InterPro:IPR001388)%3B BEST Arabidopsis thaliana protein match is: synaptobrevin-related protein 1 (TAIR:AT2G33120.1)%3B Has 2472 Blast hits to 2471 proteins in 261 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 997%3B Fungi - 453%3B Plants - 611%3B Viruses - 0%3B Other Eukaryotes - 411 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15342965, PMID:15876431, PMID:17660356, PMID:18678865, PMID:18775970, PMID:18273019, PMID:20736450, PMID:21098265, PMID:21051940, PMID:22022536, PMID:22974509, PMID:23218542, PMID:23283982, PMID:23515225, PMID:23572542, PMID:23661365, PMID:24642714, locus:2010642; locus_type=protein_coding
AT1G04750.3	chr1:001331857	0.0	C/1331857-1332000,1332137-1332199,1332389-1332509,1332589-1332686	AT1G04750.3 CDS AT1G04750 ID=AT1G04750.3; Parent=AT1G04750; Name=AT1G04750.3; Note=vesicle-associated membrane protein 721; symbol=VAMP721; Alias=AT VAMP7B, ATVAMP721, VAMP7B, VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B; full_name=vesicle-associated membrane protein 721; curator_summary=Encodes vesicle-associated membrane protein 7B (VAMP7B%2C or VAMP721). Required for cell plate formation.; computational_description=vesicle-associated membrane protein 721 (VAMP721)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: transport%2C vesicle-mediated transport%3B LOCATED IN: endosome%2C plasma membrane%2C membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908)%2C Longin-like (InterPro:IPR011012)%2C Synaptobrevin (InterPro:IPR001388)%3B BEST Arabidopsis thaliana protein match is: synaptobrevin-related protein 1 (TAIR:AT2G33120.1)%3B Has 2472 Blast hits to 2471 proteins in 261 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 997%3B Fungi - 453%3B Plants - 611%3B Viruses - 0%3B Other Eukaryotes - 411 (source: NCBI BLink).; Dbxref=PMID:15342965, PMID:15876431, PMID:17660356, PMID:18678865, PMID:18775970, PMID:18273019, PMID:20736450, PMID:21098265, PMID:21051940, PMID:22022536, PMID:22974509, PMID:23218542, PMID:23283982, PMID:23515225, PMID:23572542, PMID:23661365, PMID:24642714, locus:2010642; locus_type=protein_coding
AT1G04750.4	chr1:001331857	0.0	C/1331857-1332000,1332137-1332199,1332389-1332509,1332589-1332686	AT1G04750.4 CDS AT1G04750 ID=AT1G04750.4; Parent=AT1G04750; Name=AT1G04750.4; Note=vesicle-associated membrane protein 721; symbol=VAMP721; Alias=AT VAMP7B, ATVAMP721, VAMP7B, VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B; full_name=vesicle-associated membrane protein 721; curator_summary=Encodes vesicle-associated membrane protein 7B (VAMP7B%2C or VAMP721). Required for cell plate formation.; computational_description=vesicle-associated membrane protein 721 (VAMP721)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: transport%2C vesicle-mediated transport%3B LOCATED IN: endosome%2C plasma membrane%2C membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908)%2C Longin-like (InterPro:IPR011012)%2C Synaptobrevin (InterPro:IPR001388)%3B BEST Arabidopsis thaliana protein match is: synaptobrevin-related protein 1 (TAIR:AT2G33120.1)%3B Has 2472 Blast hits to 2471 proteins in 261 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 997%3B Fungi - 453%3B Plants - 611%3B Viruses - 0%3B Other Eukaryotes - 411 (source: NCBI BLink).; Dbxref=PMID:15342965, PMID:15876431, PMID:17660356, PMID:18678865, PMID:18775970, PMID:18273019, PMID:20736450, PMID:21098265, PMID:21051940, PMID:22022536, PMID:22974509, PMID:23218542, PMID:23283982, PMID:23515225, PMID:23572542, PMID:23661365, PMID:24642714, locus:2010642; locus_type=protein_coding
AT1G04287.1	chr1:001333696	0.0	W/1333696-1334012	AT1G04287.1 lnc_RNA AT1G04287 ID=AT1G04287.1; Parent=AT1G04287; Name=AT1G04287.1; locus_type=long_noncoding_rna
AT1G04760.1	chr1:001334760	0.0	W/1334760-1334949,1335332-1335473,1335563-1335683,1335768-1335830,1335924-1336070	AT1G04760.1 CDS AT1G04760 ID=AT1G04760.1; Parent=AT1G04760; Name=AT1G04760.1; Note=vesicle-associated membrane protein 726; curator_summary=member of Synaptobrevin -like protein family; conf_class=1; symbol=VAMP726; Alias=ATVAMP726, vesicle-associated membrane protein 726; full_name=vesicle-associated membrane protein 726; computational_description=vesicle-associated membrane protein 726 (VAMP726)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: transport%2C vesicle-mediated transport%3B LOCATED IN: endosome%2C plasma membrane%2C chloroplast%2C membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908)%2C Longin-like (InterPro:IPR011012)%2C Synaptobrevin (InterPro:IPR001388)%3B BEST Arabidopsis thaliana protein match is: vesicle-associated membrane protein 725 (TAIR:AT2G32670.1)%3B Has 2469 Blast hits to 2468 proteins in 263 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 990%3B Fungi - 448%3B Plants - 610%3B Viruses - 0%3B Other Eukaryotes - 421 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15342965, PMID:15876431, PMID:18775970, PMID:20736450, locus:2010627; locus_type=protein_coding
AT1G04760.2	chr1:001334760	0.0	W/1334760-1334949,1335332-1335473,1335563-1335683,1335768-1335830,1335924-1336070	AT1G04760.2 CDS AT1G04760 ID=AT1G04760.2; Parent=AT1G04760; Name=AT1G04760.2; Note=vesicle-associated membrane protein 726; symbol=VAMP726; Alias=ATVAMP726, vesicle-associated membrane protein 726; full_name=vesicle-associated membrane protein 726; Dbxref=PMID:15342965, PMID:15876431, PMID:18775970, PMID:20736450, locus:2010627; curator_summary=member of Synaptobrevin -like protein family; computational_description=vesicle-associated membrane protein 726 (VAMP726)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: transport%2C vesicle-mediated transport%3B LOCATED IN: endosome%2C plasma membrane%2C chloroplast%2C membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908)%2C Longin-like (InterPro:IPR011012)%2C Synaptobrevin (InterPro:IPR001388)%3B BEST Arabidopsis thaliana protein match is: vesicle-associated membrane protein 725 (TAIR:AT2G32670.1)%3B Has 2469 Blast hits to 2468 proteins in 263 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 990%3B Fungi - 448%3B Plants - 610%3B Viruses - 0%3B Other Eukaryotes - 421 (source: NCBI BLink).; locus_type=protein_coding
AT1G04770.1	chr1:001336564	0.0	C/1336564-1336986,1337087-1337242,1337344-1337556,1337648-1337767	AT1G04770.1 CDS AT1G04770 ID=AT1G04770.1; Parent=AT1G04770; Name=AT1G04770.1; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; conf_class=2; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B FUNCTIONS IN: binding%3B INVOLVED IN: biological_process unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440)%2C Tetratricopeptide-like helical (InterPro:IPR011990)%2C Tetratricopeptide repeat-containing (InterPro:IPR013026)%2C Tetratricopeptide repeat (InterPro:IPR019734)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G48850.1)%3B Has 226 Blast hits to 224 proteins in 29 species: Archae - 0%3B Bacteria - 22%3B Metazoa - 1%3B Fungi - 0%3B Plants - 173%3B Viruses - 0%3B Other Eukaryotes - 30 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15842617, PMID:17114350, PMID:18775970, PMID:18854047, PMID:20736450, PMID:22383539, locus:2010612; locus_type=protein_coding
AT1G04778.1	chr1:001339947	0.0	W/1339947-1340117	AT1G04778.1 CDS AT1G04778 ID=AT1G04778.1; Parent=AT1G04778; Name=AT1G04778.1; Note=hypothetical protein; conf_class=1; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:4010713412; locus_type=protein_coding
AT1G04780.1	chr1:001340891	0.0	C/1340891-1341259,1341340-1342965	AT1G04780.1 CDS AT1G04780 ID=AT1G04780.1; Parent=AT1G04780; Name=AT1G04780.1; Note=Ankyrin repeat family protein; conf_class=2; computational_description=Ankyrin repeat family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683)%2C Protein of unknown function DUF3424 (InterPro:IPR021832)%2C Ankyrin repeat (InterPro:IPR002110)%3B BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT3G24210.1)%3B Has 1138 Blast hits to 827 proteins in 107 species: Archae - 2%3B Bacteria - 12%3B Metazoa - 639%3B Fungi - 18%3B Plants - 352%3B Viruses - 2%3B Other Eukaryotes - 113 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18650403, locus:2010597; locus_type=protein_coding
AT1G04790.1	chr1:001345469	0.0	W/1345469-1346241,1346359-1346839,1346942-1347040,1347238-1347438,1347527-1347615,1347705-1347804,1347899-1347997,1348081-1348143	AT1G04790.1 CDS AT1G04790 ID=AT1G04790.1; Parent=AT1G04790; Name=AT1G04790.1; Note=RING/U-box superfamily protein; conf_class=2; computational_description=RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G55530.1)%3B Has 9425 Blast hits to 9403 proteins in 278 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2591%3B Fungi - 765%3B Plants - 4746%3B Viruses - 72%3B Other Eukaryotes - 1251 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11983057, PMID:18775970, locus:2010582; locus_type=protein_coding
AT1G04800.1	chr1:001348635	0.0	C/1348635-1349237	AT1G04800.1 CDS AT1G04800 ID=AT1G04800.1; Parent=AT1G04800; Name=AT1G04800.1; Note=glycine-rich protein; conf_class=1; computational_description=glycine-rich protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: N-terminal protein myristoylation%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 12 growth stages%3B Has 109132 Blast hits to 26905 proteins in 1855 species: Archae - 173%3B Bacteria - 37969%3B Metazoa - 32319%3B Fungi - 6881%3B Plants - 10265%3B Viruses - 1569%3B Other Eukaryotes - 19956 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12912986, PMID:17142483, PMID:18650403, locus:2010682; locus_type=protein_coding
AT1G04810.1	chr1:001350304	0.0	W/1350304-1350449,1350833-1350902,1351107-1351212,1351526-1351634,1351713-1351881,1352071-1352531,1352638-1352773,1352876-1353124,1353224-1353444,1353541-1353799,1353921-1354153,1354240-1354738,1354914-1355261	AT1G04810.1 CDS AT1G04810 ID=AT1G04810.1; Parent=AT1G04810; Name=AT1G04810.1; Note=26S proteasome regulatory complex%2C non-ATPase subcomplex%2C Rpn2/Psmd1 subunit; conf_class=1; computational_description=26S proteasome regulatory complex%2C non-ATPase subcomplex%2C Rpn2/Psmd1 subunit%3B FUNCTIONS IN: enzyme regulator activity%2C binding%3B INVOLVED IN: protein catabolic process%2C ubiquitin-dependent protein catabolic process%3B LOCATED IN: proteasome regulatory particle%2C base subcomplex%2C proteasome complex%2C nucleus%2C plasma membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989)%2C Proteasome/cyclosome%2C regulatory subunit (InterPro:IPR002015)%2C Armadillo-type fold (InterPro:IPR016024)%2C 26S proteasome regulatory complex%2C non-ATPase subcomplex%2C Rpn2/Psmd1 subunit (InterPro:IPR016642)%3B BEST Arabidopsis thaliana protein match is: 26S proteasome regulatory complex%2C non-ATPase subcomplex%2C Rpn2/Psmd1 subunit (TAIR:AT2G32730.1)%3B Has 1171 Blast hits to 1071 proteins in 297 species: Archae - 14%3B Bacteria - 33%3B Metazoa - 390%3B Fungi - 382%3B Plants - 143%3B Viruses - 0%3B Other Eukaryotes - 209 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:10363660, PMID:11742986, PMID:9741626, PMID:12942173, PMID:14623884, PMID:15449379, PMID:18650403, PMID:20516081, PMID:20736450, locus:2010672; locus_type=protein_coding
AT1G04820.1	chr1:001356421	0.0	C/1356421-1357074,1357158-1357763,1358174-1358266	AT1G04820.1 CDS AT1G04820 ID=AT1G04820.1; Parent=AT1G04820; Name=AT1G04820.1; Note=tubulin alpha-4 chain; curator_summary=Encodes an alpha tubulin isoform that is expressed in roots%2C leaves and flowers.; conf_class=2; symbol=TUA4; Alias=TOR2, TORTIFOLIA 2; full_name=tubulin alpha-4 chain; computational_description=tubulin alpha-4 chain (TUA4)%3B FUNCTIONS IN: structural constituent of cytoskeleton%3B INVOLVED IN: response to cadmium ion%2C microtubule-based process%2C cellular response to gravity%3B LOCATED IN: tubulin complex%2C cytosol%2C cell wall%2C plasma membrane%2C chloroplast%3B EXPRESSED IN: 29 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Alpha tubulin (InterPro:IPR002452)%2C Tubulin (InterPro:IPR000217)%2C Tubulin/FtsZ%2C GTPase domain (InterPro:IPR003008)%2C Tubulin/FtsZ%2C N-terminal (InterPro:IPR019746)%2C Tubulin/FtsZ%2C C-terminal (InterPro:IPR008280)%2C Tubulin%2C conserved site (InterPro:IPR017975)%2C Tubulin/FtsZ%2C 2-layer sandwich domain (InterPro:IPR018316)%3B BEST Arabidopsis thaliana protein match is: tubulin alpha-2 chain (TAIR:AT1G50010.1)%3B Has 22626 Blast hits to 22529 proteins in 4679 species: Archae - 4%3B Bacteria - 25%3B Metazoa - 4391%3B Fungi - 13400%3B Plants - 1532%3B Viruses - 0%3B Other Eukaryotes - 3274 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:1498608, PMID:12662315, PMID:12969430, PMID:14551330, PMID:15010618, PMID:15060130, PMID:15276459, PMID:15971193, PMID:16055689, PMID:16247729, PMID:16377752, PMID:16502469, PMID:16679420, PMID:16920880, PMID:16998091, PMID:17040561, PMID:17189330, PMID:17404219, PMID:17672910, PMID:18160300, PMID:18053238, PMID:18359847, PMID:18433157, PMID:18539749, PMID:18650403, PMID:18633119, PMID:18775970, PMID:18854335, PMID:19626137, PMID:19638477, PMID:20018592, PMID:20736450, PMID:20729381, PMID:21558543, PMID:22582100, PMID:22995285, PMID:24714762, PMID:25133612, locus:2010677; locus_type=protein_coding
AT1G04830.2	chr1:001358782	0.0	C/1358782-1358854,1359127-1359251,1359381-1359497,1359720-1359899,1360225-1360353,1360438-1360536,1360680-1360832,1361075-1361179,1361318-1361410,1361539-1361844	AT1G04830.2 CDS AT1G04830 ID=AT1G04830.2; Parent=AT1G04830; Name=AT1G04830.2; Note=Ypt/Rab-GAP domain of gyp1p superfamily protein; conf_class=4; computational_description=Ypt/Rab-GAP domain of gyp1p superfamily protein%3B FUNCTIONS IN: RAB GTPase activator activity%3B INVOLVED IN: regulation of Rab GTPase activity%3B LOCATED IN: intracellular%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195)%3B BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT4G13730.1)%3B Has 3724 Blast hits to 3613 proteins in 228 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 1821%3B Fungi - 641%3B Plants - 593%3B Viruses - 0%3B Other Eukaryotes - 667 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:18775970, locus:2010662; locus_type=protein_coding
AT1G04830.1	chr1:001359087	0.0	C/1359087-1359251,1359381-1359497,1359720-1359899,1360225-1360353,1360438-1360536,1360680-1360832,1361075-1361179,1361318-1361410,1361539-1361844	AT1G04830.1 CDS AT1G04830 ID=AT1G04830.1; Parent=AT1G04830; Name=AT1G04830.1; Note=Ypt/Rab-GAP domain of gyp1p superfamily protein; conf_class=2; computational_description=Ypt/Rab-GAP domain of gyp1p superfamily protein%3B FUNCTIONS IN: RAB GTPase activator activity%3B INVOLVED IN: regulation of Rab GTPase activity%3B LOCATED IN: intracellular%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195)%3B BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT4G13730.1)%3B Has 3724 Blast hits to 3613 proteins in 228 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 1821%3B Fungi - 641%3B Plants - 593%3B Viruses - 0%3B Other Eukaryotes - 667 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, locus:2010662; locus_type=protein_coding
AT1G04830.3	chr1:001359087	0.0	C/1359087-1359251,1359381-1359497,1359720-1359899,1360438-1360536,1360680-1360832,1361075-1361179,1361318-1361410,1361539-1361844	AT1G04830.3 CDS AT1G04830 ID=AT1G04830.3; Parent=AT1G04830; Name=AT1G04830.3; Note=Ypt/Rab-GAP domain of gyp1p superfamily protein; computational_description=Ypt/Rab-GAP domain of gyp1p superfamily protein%3B FUNCTIONS IN: RAB GTPase activator activity%3B INVOLVED IN: regulation of Rab GTPase activity%3B LOCATED IN: intracellular%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195)%3B BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT4G13730.1)%3B Has 3724 Blast hits to 3613 proteins in 228 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 1821%3B Fungi - 641%3B Plants - 593%3B Viruses - 0%3B Other Eukaryotes - 667 (source: NCBI BLink).; Dbxref=PMID:18775970, locus:2010662; locus_type=protein_coding
AT1G04840.1	chr1:001362867	0.0	C/1362867-1363699,1363798-1364962	AT1G04840.1 CDS AT1G04840 ID=AT1G04840.1; Parent=AT1G04840; Name=AT1G04840.1; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; conf_class=4; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G74630.1)%3B Has 39151 Blast hits to 14409 proteins in 285 species: Archae - 0%3B Bacteria - 8%3B Metazoa - 167%3B Fungi - 139%3B Plants - 38292%3B Viruses - 0%3B Other Eukaryotes - 545 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:20736450, locus:2010652; locus_type=protein_coding
AT1G04850.1	chr1:001365311	0.0	C/1365311-1365487,1365612-1365731,1365873-1365950,1366039-1366128,1366218-1366299,1366391-1366458,1366601-1366661,1366807-1366886,1367147-1367223,1367613-1367708,1367790-1367934,1368539-1368706	AT1G04850.1 CDS AT1G04850 ID=AT1G04850.1; Parent=AT1G04850; Name=AT1G04850.1; Note=ubiquitin-associated (UBA)/TS-N domain-containing protein; conf_class=2; computational_description=ubiquitin-associated (UBA)/TS-N domain-containing protein%3B FUNCTIONS IN: zinc ion binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: intracellular%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C C2H2-like (InterPro:IPR015880)%2C Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal (InterPro:IPR000449)%2C Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal%2C eukaryote (InterPro:IPR015940)%2C PUB domain (InterPro:IPR018997)%2C PUG domain (InterPro:IPR006567)%2C Zinc finger%2C C2H2-type (InterPro:IPR007087)%2C UBA-like (InterPro:IPR009060)%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48690.1)%3B Has 9425 Blast hits to 9403 proteins in 278 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2591%3B Fungi - 765%3B Plants - 4746%3B Viruses - 72%3B Other Eukaryotes - 1251 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11587532, PMID:15659098, PMID:18650403, locus:2010637; locus_type=protein_coding
AT1G04850.2	chr1:001365311	0.0	C/1365311-1365487,1365612-1365731,1365873-1365950,1366039-1366128,1366218-1366299,1366391-1366458,1366601-1366661,1366807-1366886,1367147-1367223,1367613-1367708,1367790-1367835	AT1G04850.2 CDS AT1G04850 ID=AT1G04850.2; Parent=AT1G04850; Name=AT1G04850.2; Note=ubiquitin-associated (UBA)/TS-N domain-containing protein; computational_description=ubiquitin-associated (UBA)/TS-N domain-containing protein%3B FUNCTIONS IN: zinc ion binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: intracellular%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C C2H2-like (InterPro:IPR015880)%2C Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal (InterPro:IPR000449)%2C Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal%2C eukaryote (InterPro:IPR015940)%2C PUB domain (InterPro:IPR018997)%2C PUG domain (InterPro:IPR006567)%2C Zinc finger%2C C2H2-type (InterPro:IPR007087)%2C UBA-like (InterPro:IPR009060)%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48690.1)%3B Has 9425 Blast hits to 9403 proteins in 278 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2591%3B Fungi - 765%3B Plants - 4746%3B Viruses - 72%3B Other Eukaryotes - 1251 (source: NCBI BLink).; Dbxref=PMID:11587532, PMID:15659098, PMID:18650403, locus:2010637; locus_type=protein_coding
AT1G04860.1	chr1:001369306	0.0	C/1369306-1369546,1369646-1372290	AT1G04860.1 CDS AT1G04860 ID=AT1G04860.1; Parent=AT1G04860; Name=AT1G04860.1; Note=ubiquitin-specific protease 2; curator_summary=Encodes a ubiquitin-specific protease.; conf_class=2; symbol=UBP2; Alias=ATUBP2; full_name=ubiquitin-specific protease 2; computational_description=ubiquitin-specific protease 2 (UBP2)%3B FUNCTIONS IN: ubiquitin-specific protease activity%3B INVOLVED IN: ubiquitin-dependent protein catabolic process%3B LOCATED IN: proteasome complex%2C chloroplast%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C UBP-type (InterPro:IPR001607)%2C Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2%2C conserved site (InterPro:IPR018200)%2C Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394)%3B BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 1 (TAIR:AT2G32780.1)%3B Has 10400 Blast hits to 6714 proteins in 274 species: Archae - 0%3B Bacteria - 50%3B Metazoa - 5279%3B Fungi - 1927%3B Plants - 1459%3B Viruses - 5%3B Other Eukaryotes - 1680 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11115897, PMID:12663224, PMID:15923322, PMID:18485060, PMID:18515112, locus:2010622; locus_type=protein_coding
AT1G04870.1	chr1:001373485	0.0	C/1373485-1373661,1373751-1373834,1373917-1374102,1374248-1374437,1374742-1374847,1375029-1375128	AT1G04870.1 CDS AT1G04870 ID=AT1G04870.1; Parent=AT1G04870; Name=AT1G04870.1; Note=protein arginine methyltransferase 10; curator_summary=Encodes a type I protein arginine methyltransferase based on the At1g04870.2 gene model. PRMT10 can catalyze the asymmetric dimethylation of arginine 3 on histone 4 and can also methylate myelin basic protein in vitro. Mutants lacking PRMT10 flower late due to defects in the autonomous pathway and they have elevated levels of FLC transcripts.; conf_class=2; symbol=PRMT10; Alias=ATPRMT10; full_name=protein arginine methyltransferase 10; computational_description=protein arginine methyltransferase 10 (PRMT10)%3B FUNCTIONS IN: methyltransferase activity%3B INVOLVED IN: vegetative to reproductive phase transition of meristem%3B LOCATED IN: cytoplasm%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Skb1 methyltransferase (InterPro:IPR007857)%3B BEST Arabidopsis thaliana protein match is: protein arginine methyltransferase 6 (TAIR:AT3G20020.1)%3B Has 1641 Blast hits to 1634 proteins in 326 species: Archae - 0%3B Bacteria - 17%3B Metazoa - 883%3B Fungi - 244%3B Plants - 262%3B Viruses - 0%3B Other Eukaryotes - 235 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12872006, PMID:18007657, PMID:18660432, PMID:20736450, PMID:21986201, PMID:22729397, locus:2010607; locus_type=protein_coding
AT1G04870.2	chr1:001373485	0.0	C/1373485-1373661,1373751-1373834,1373917-1374102,1374248-1374437,1374742-1374847,1375029-1375221,1375383-1375598	AT1G04870.2 CDS AT1G04870 ID=AT1G04870.2; Parent=AT1G04870; Name=AT1G04870.2; Note=protein arginine methyltransferase 10; curator_summary=Encodes a type I protein arginine methyltransferase based on the At1g04870.2 gene model. PRMT10 can catalyze the asymmetric dimethylation of arginine 3 on histone 4 and can also methylate myelin basic protein in vitro. Mutants lacking PRMT10 flower late due to defects in the autonomous pathway and they have elevated levels of FLC transcripts.; conf_class=2; symbol=PRMT10; Alias=ATPRMT10; full_name=protein arginine methyltransferase 10; computational_description=protein arginine methyltransferase 10 (PRMT10)%3B FUNCTIONS IN: methyltransferase activity%3B INVOLVED IN: vegetative to reproductive phase transition of meristem%3B LOCATED IN: cytoplasm%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Skb1 methyltransferase (InterPro:IPR007857)%3B BEST Arabidopsis thaliana protein match is: protein arginine methyltransferase 6 (TAIR:AT3G20020.1)%3B Has 1641 Blast hits to 1634 proteins in 326 species: Archae - 0%3B Bacteria - 17%3B Metazoa - 883%3B Fungi - 244%3B Plants - 262%3B Viruses - 0%3B Other Eukaryotes - 235 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12872006, PMID:18007657, PMID:18660432, PMID:20736450, PMID:21986201, PMID:22729397, locus:2010607; locus_type=protein_coding
AT1G04880.1	chr1:001376106	0.0	C/1376106-1376525,1376620-1377035,1377139-1377261,1377354-1377510,1377665-1377743,1378113-1378264	AT1G04880.1 CDS AT1G04880 ID=AT1G04880.1; Parent=AT1G04880; Name=AT1G04880.1; Note=HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein; conf_class=1; computational_description=HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: intracellular%2C nucleus%3B EXPRESSED IN: 10 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: High mobility group%2C superfamily (InterPro:IPR009071)%2C High mobility group%2C HMG1/HMG2 (InterPro:IPR000910)%2C ARID/BRIGHT DNA-binding domain (InterPro:IPR001606)%3B BEST Arabidopsis thaliana protein match is: HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (TAIR:AT1G76110.1)%3B Has 3445 Blast hits to 3110 proteins in 301 species: Archae - 0%3B Bacteria - 5%3B Metazoa - 2269%3B Fungi - 308%3B Plants - 431%3B Viruses - 3%3B Other Eukaryotes - 429 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11118137, PMID:18775970, PMID:19291320, PMID:22037706, locus:2010587; locus_type=protein_coding
AT1TE04500	chr1:001379290	0.0	W/1379290-1380001	AT1TE04500 transposable_element AT1TE04500 ID=AT1TE04500; Name=AT1TE04500; Alias=ATREP5
AT1G04890.1	chr1:001381116	0.0	C/1381116-1381181,1381276-1382249,1382351-1382546	AT1G04890.1 CDS AT1G04890 ID=AT1G04890.1; Parent=AT1G04890; Name=AT1G04890.1; Note=zein-binding protein (Protein of unknown function%2C DUF593); conf_class=1; computational_description=CONTAINS InterPro DOMAIN/s: Intermediate filament protein%2C conserved site (InterPro:IPR018039)%2C Protein of unknown function DUF593 (InterPro:IPR007656)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function%2C DUF593 (TAIR:AT4G13630.2)%3B Has 7701 Blast hits to 5611 proteins in 507 species: Archae - 60%3B Bacteria - 425%3B Metazoa - 4500%3B Fungi - 427%3B Plants - 586%3B Viruses - 7%3B Other Eukaryotes - 1696 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:20736450, locus:2010572; locus_type=protein_coding
AT1G04293.1	chr1:001382790	0.0	C/1382790-1383059	AT1G04293.1 lnc_RNA AT1G04293 ID=AT1G04293.1; Parent=AT1G04293; Name=AT1G04293.1; locus_type=long_noncoding_rna
AT1G04895.1	chr1:001383008	0.0	C/1383008-1383046,1383067-1383108,1383258-1383422	AT1G04895.1 CDS AT1G04895 ID=AT1G04895.1; Parent=AT1G04895; Name=AT1G04895.1; Note=hypothetical protein; locus_type=protein_coding
AT1TE04510	chr1:001383410	0.0	W/1383410-1383734	AT1TE04510 transposable_element AT1TE04510 ID=AT1TE04510; Name=AT1TE04510; Alias=ATREP1
AT1G04900.1	chr1:001383912	0.0	W/1383912-1384040,1384340-1384451,1384659-1384741,1384837-1384902,1385401-1385501,1385647-1385765,1386109-1386149,1386250-1386338,1386410-1386569,1386641-1386757,1387024-1387068,1387203-1387334,1387427-1387561	AT1G04900.1 CDS AT1G04900 ID=AT1G04900.1; Parent=AT1G04900; Name=AT1G04900.1; Note=NADH dehydrogenase ubiquinone complex I%2C assembly factor-like protein (DUF185); conf_class=1; computational_description=Protein of unknown function (DUF185)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF185 (InterPro:IPR003788)%3B Has 316 Blast hits to 314 proteins in 164 species: Archae - 0%3B Bacteria - 117%3B Metazoa - 2%3B Fungi - 113%3B Plants - 44%3B Viruses - 0%3B Other Eukaryotes - 40 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:21908688, locus:2010567; locus_type=protein_coding
AT1G04297.1	chr1:001385478	0.0	C/1385478-1386132	AT1G04297.1 antisense_lncRNA AT1G04297 ID=AT1G04297.1; Parent=AT1G04297; Name=AT1G04297.1; description=Natural antisense transcript overlaps with AT1G04900; Note=Natural antisense transcript overlaps with AT1G04900; locus_type=antisense_long_noncoding_rna
AT1G04910.1	chr1:001388101	0.0	C/1388101-1388715,1388881-1389010,1389204-1389487,1389581-1389704,1389993-1390081,1390264-1390334,1390451-1390529,1390777-1390936,1391067-1391074	AT1G04910.1 CDS AT1G04910 ID=AT1G04910.1; Parent=AT1G04910; Name=AT1G04910.1; Note=O-fucosyltransferase family protein; conf_class=2; computational_description=O-fucosyltransferase family protein%3B CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378)%3B BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT1G22460.1)%3B Has 861 Blast hits to 824 proteins in 30 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 861%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16618929, PMID:16973304, PMID:23272088, locus:2010657; locus_type=protein_coding
AT1G04303.1	chr1:001388988	0.0	W/1388988-1389225	AT1G04303.1 antisense_lncRNA AT1G04303 ID=AT1G04303.1; Parent=AT1G04303; Name=AT1G04303.1; description=Natural antisense transcript overlaps with AT1G04910; Note=Natural antisense transcript overlaps with AT1G04910; locus_type=antisense_long_noncoding_rna
AT1G04920.1	chr1:001391674	0.0	C/1391674-1391950,1392056-1392183,1392257-1393192,1393269-1393331,1393480-1393710,1393796-1393927,1394014-1394148,1394231-1394926,1395008-1395071,1395145-1395377,1395463-1395756	AT1G04920.1 CDS AT1G04920 ID=AT1G04920.1; Parent=AT1G04920; Name=AT1G04920.1; Note=sucrose phosphate synthase 3F; curator_summary=Encodes a protein with putative sucrose-phosphate synthase activity.; conf_class=1; symbol=SPS3F; Alias=ATSPS3F, sucrose phosphate synthase 3F; full_name=sucrose phosphate synthase 3F; computational_description=sucrose phosphate synthase 3F (SPS3F)%3B FUNCTIONS IN: sucrose-phosphate synthase activity%2C transferase activity%2C transferring glycosyl groups%3B INVOLVED IN: biosynthetic process%2C sucrose metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 9 plant structures%3B EXPRESSED DURING: LP.04 four leaves visible%2C 4 anthesis%2C C globular stage%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Sucrose-phosphate synthase (InterPro:IPR006380)%2C Sucrose synthase (InterPro:IPR000368)%2C Sucrose phosphate synthase%2C plant (InterPro:IPR012819)%2C Glycosyl transferase%2C group 1 (InterPro:IPR001296)%3B BEST Arabidopsis thaliana protein match is: sucrose phosphate synthase 1F (TAIR:AT5G20280.1)%3B Has 8635 Blast hits to 8489 proteins in 1558 species: Archae - 393%3B Bacteria - 5603%3B Metazoa - 16%3B Fungi - 85%3B Plants - 793%3B Viruses - 0%3B Other Eukaryotes - 1745 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12845583, PMID:15052571, PMID:16287031, PMID:16553903, PMID:16553896, PMID:16876912, PMID:20736450, PMID:21309792, PMID:24994761, locus:2010647; locus_type=protein_coding
AT1G04930.1	chr1:001396546	0.0	C/1396546-1396627,1396786-1396865,1397011-1397124,1397497-1397577,1397668-1397707,1397830-1397882,1398440-1398988	AT1G04930.1 CDS AT1G04930 ID=AT1G04930.1; Parent=AT1G04930; Name=AT1G04930.1; Note=hydroxyproline-rich glycoprotein family protein; conf_class=1; computational_description=hydroxyproline-rich glycoprotein family protein%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 14 plant structures%3B EXPRESSED DURING: 4 anthesis%2C F mature embryo stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%2C D bilateral stage%3B BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT2G32840.1)%3B Has 1624 Blast hits to 1330 proteins in 201 species: Archae - 0%3B Bacteria - 140%3B Metazoa - 517%3B Fungi - 162%3B Plants - 364%3B Viruses - 182%3B Other Eukaryotes - 259 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14576160, locus:2010632; locus_type=protein_coding
AT1G04930.2	chr1:001396546	0.0	C/1396546-1396627,1396786-1396865,1397011-1397124,1397497-1397577,1397668-1397707,1397830-1397882,1398281-1398370,1398440-1398988	AT1G04930.2 CDS AT1G04930 ID=AT1G04930.2; Parent=AT1G04930; Name=AT1G04930.2; Note=hydroxyproline-rich glycoprotein family protein; conf_class=6; computational_description=hydroxyproline-rich glycoprotein family protein%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 14 plant structures%3B EXPRESSED DURING: 4 anthesis%2C F mature embryo stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%2C D bilateral stage%3B BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT2G32840.1)%3B Has 1624 Blast hits to 1330 proteins in 201 species: Archae - 0%3B Bacteria - 140%3B Metazoa - 517%3B Fungi - 162%3B Plants - 364%3B Viruses - 182%3B Other Eukaryotes - 259 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:14576160, locus:2010632; locus_type=protein_coding
AT1G04930.3	chr1:001397128	0.0	C/1397128-1397139,1397497-1397577,1397668-1397707,1397830-1397882,1398440-1398988	AT1G04930.3 CDS AT1G04930 ID=AT1G04930.3; Parent=AT1G04930; Name=AT1G04930.3; Note=hydroxyproline-rich glycoprotein family protein; computational_description=hydroxyproline-rich glycoprotein family protein%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 14 plant structures%3B EXPRESSED DURING: 4 anthesis%2C F mature embryo stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%2C D bilateral stage%3B BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT2G32840.1)%3B Has 1624 Blast hits to 1330 proteins in 201 species: Archae - 0%3B Bacteria - 140%3B Metazoa - 517%3B Fungi - 162%3B Plants - 364%3B Viruses - 182%3B Other Eukaryotes - 259 (source: NCBI BLink).; Dbxref=PMID:14576160, locus:2010632; locus_type=protein_coding
AT1G04940.1	chr1:001399588	0.0	W/1399588-1399774,1399979-1400616	AT1G04940.1 CDS AT1G04940 ID=AT1G04940.1; Parent=AT1G04940; Name=AT1G04940.1; Note=translocon at the inner envelope membrane of chloroplasts 20; curator_summary=Tic20 is believed to function as a component of the protein-conducting channel at the inner envelope membrane. Genes AT1G04940 and AT1G04945 were switched for the TAIR7 genome release to give consistency with MIPs annotation. The Arabidopsis genome encodes four Tic20 homologous proteins%2C AT1G04940(Tic20-I)%2C AT2G47840(Tic20-II)%2C AT4G03320(Tic20-IV) and AT5G55710(Tic20-V).; conf_class=2; symbol=Tic20-I; Alias=AtTic20-I, translocon at the inner envelope membrane of chloroplasts 20-I, TIC20, translocon at the inner envelope membrane of chloroplasts 20, atTIC20, translocon at the inner envelope membrane of chloroplasts 20; full_name=translocon at the inner envelope membrane of chloroplasts 20-I; computational_description=translocon at the inner envelope membrane of chloroplasts 20 (TIC20)%3B CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein ycf60 (InterPro:IPR019109)%2C Chloroplast protein import component Tic20 (InterPro:IPR005691)%3B BEST Arabidopsis thaliana protein match is: HIT-type Zinc finger family protein (TAIR:AT1G04945.3)%3B Has 279 Blast hits to 278 proteins in 76 species: Archae - 0%3B Bacteria - 100%3B Metazoa - 0%3B Fungi - 0%3B Plants - 114%3B Viruses - 0%3B Other Eukaryotes - 65 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11910011, PMID:12383089, PMID:12376647, PMID:12897258, PMID:14576160, PMID:15356332, PMID:11152613, PMID:16891400, PMID:19086173, PMID:19531596, PMID:20040542, PMID:21266460, PMID:21395885, PMID:21874592, PMID:23372012, PMID:25551276, locus:2010617; locus_type=protein_coding
AT1G04945.3	chr1:001399588	0.0	W/1399588-1399774,1399979-1400554,1400976-1401155,1401303-1401507,1401676-1401744,1401846-1401978,1402067-1402651	AT1G04945.3 CDS AT1G04945 ID=AT1G04945.3; Parent=AT1G04945; Name=AT1G04945.3; Note=HIT-type Zinc finger family protein; conf_class=4; computational_description=HIT-type Zinc finger family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B EXPRESSED IN: 14 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C HIT-type (InterPro:IPR007529)%3B Has 408 Blast hits to 406 proteins in 188 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 130%3B Fungi - 151%3B Plants - 52%3B Viruses - 0%3B Other Eukaryotes - 75 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:16891400, locus:4010713413; locus_type=protein_coding
AT1G04945.1	chr1:001400969	0.0	W/1400969-1401155,1401303-1401507,1401676-1401744,1401846-1401978,1402067-1402520,1402596-1402651	AT1G04945.1 CDS AT1G04945 ID=AT1G04945.1; Parent=AT1G04945; Name=AT1G04945.1; Note=HIT-type Zinc finger family protein; conf_class=2; computational_description=HIT-type Zinc finger family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B EXPRESSED IN: 14 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C HIT-type (InterPro:IPR007529)%3B Has 408 Blast hits to 406 proteins in 188 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 130%3B Fungi - 151%3B Plants - 52%3B Viruses - 0%3B Other Eukaryotes - 75 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16891400, locus:4010713413; locus_type=protein_coding
AT1G04945.2	chr1:001400969	0.0	W/1400969-1401155,1401303-1401507,1401676-1401744,1401846-1401978,1402067-1402651	AT1G04945.2 CDS AT1G04945 ID=AT1G04945.2; Parent=AT1G04945; Name=AT1G04945.2; Note=HIT-type Zinc finger family protein; conf_class=1; computational_description=HIT-type Zinc finger family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B EXPRESSED IN: 14 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C HIT-type (InterPro:IPR007529)%3B Has 408 Blast hits to 406 proteins in 188 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 130%3B Fungi - 151%3B Plants - 52%3B Viruses - 0%3B Other Eukaryotes - 75 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16891400, locus:4010713413; locus_type=protein_coding
AT1G04945.4	chr1:001400969	0.0	W/1400969-1401155,1401303-1401507,1401676-1401744,1401846-1401978,1402067-1402520,1402623-1402651	AT1G04945.4 CDS AT1G04945 ID=AT1G04945.4; Parent=AT1G04945; Name=AT1G04945.4; Note=HIT-type Zinc finger family protein; computational_description=HIT-type Zinc finger family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B EXPRESSED IN: 14 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C HIT-type (InterPro:IPR007529)%3B Has 408 Blast hits to 406 proteins in 188 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 130%3B Fungi - 151%3B Plants - 52%3B Viruses - 0%3B Other Eukaryotes - 75 (source: NCBI BLink).; Dbxref=PMID:16891400, locus:4010713413; locus_type=protein_coding
AT1G04950.1	chr1:001403606	0.0	C/1403606-1404112,1404201-1404326,1404617-1404749,1405110-1405234,1405560-1405655,1405743-1405880,1405957-1406057,1406339-1406447,1406541-1406642,1406872-1406958,1407059-1407184	AT1G04950.1 CDS AT1G04950 ID=AT1G04950.1; Parent=AT1G04950; Name=AT1G04950.1; Note=TATA BOX ASSOCIATED FACTOR II 59; curator_summary=Encodes one of two Arabidopsis proteins with significant similarity to the histone fold TBP-associated factor TAF6. Mutants are embryo lethal and transmission of the mutant allele through the male gametophyte is significantly reduced. This is due to reduced pollen tube growth of the mutant.; conf_class=2; symbol=TAFII59; Alias=ATTAF6, EMB2781, EMBRYO DEFECTIVE 2781, TAF6, TBP-associated factor 6; full_name=TATA BOX ASSOCIATED FACTOR II 59; computational_description=TATA BOX ASSOCIATED FACTOR II 59 (TAFII59)%3B FUNCTIONS IN: RNA polymerase II transcription factor activity%2C transcription initiation factor activity%2C DNA binding%3B INVOLVED IN: pollen tube growth%2C transcription initiation%3B LOCATED IN: nucleus%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1546 (InterPro:IPR011442)%2C Histone-fold (InterPro:IPR009072)%2C TATA box binding protein associated factor (TAF) (InterPro:IPR004823)%3B BEST Arabidopsis thaliana protein match is: TBP-ASSOCIATED FACTOR 6B (TAIR:AT1G54360.1)%3B Has 496 Blast hits to 490 proteins in 183 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 209%3B Fungi - 144%3B Plants - 74%3B Viruses - 0%3B Other Eukaryotes - 69 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16039640, PMID:17340043, PMID:17526916, PMID:18315867, PMID:15527982, locus:2010667; locus_type=protein_coding
AT1G04950.2	chr1:001403606	0.0	C/1403606-1404112,1404201-1404326,1404617-1404749,1405110-1405234,1405560-1405655,1405743-1405880,1405957-1406057,1406339-1406447,1406541-1406642,1406872-1406958,1407059-1407184	AT1G04950.2 CDS AT1G04950 ID=AT1G04950.2; Parent=AT1G04950; Name=AT1G04950.2; Note=TATA BOX ASSOCIATED FACTOR II 59; curator_summary=Encodes one of two Arabidopsis proteins with significant similarity to the histone fold TBP-associated factor TAF6. Mutants are embryo lethal and transmission of the mutant allele through the male gametophyte is significantly reduced. This is due to reduced pollen tube growth of the mutant.; conf_class=2; symbol=TAFII59; Alias=ATTAF6, EMB2781, EMBRYO DEFECTIVE 2781, TAF6, TBP-associated factor 6; full_name=TATA BOX ASSOCIATED FACTOR II 59; computational_description=TATA BOX ASSOCIATED FACTOR II 59 (TAFII59)%3B FUNCTIONS IN: RNA polymerase II transcription factor activity%2C transcription initiation factor activity%2C DNA binding%3B INVOLVED IN: pollen tube growth%2C transcription initiation%3B LOCATED IN: nucleus%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1546 (InterPro:IPR011442)%2C Histone-fold (InterPro:IPR009072)%2C TATA box binding protein associated factor (TAF) (InterPro:IPR004823)%3B BEST Arabidopsis thaliana protein match is: TBP-ASSOCIATED FACTOR 6B (TAIR:AT1G54360.1)%3B Has 496 Blast hits to 490 proteins in 183 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 209%3B Fungi - 144%3B Plants - 74%3B Viruses - 0%3B Other Eukaryotes - 69 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16039640, PMID:17340043, PMID:17526916, PMID:18315867, PMID:15527982, locus:2010667; locus_type=protein_coding
AT1G04950.3	chr1:001403606	0.0	C/1403606-1404112,1404201-1404326,1404617-1404749,1405110-1405234,1405560-1405655,1405743-1405880,1405957-1406057,1406339-1406447,1406541-1406642,1406872-1406958,1407059-1407184	AT1G04950.3 CDS AT1G04950 ID=AT1G04950.3; Parent=AT1G04950; Name=AT1G04950.3; Note=TATA BOX ASSOCIATED FACTOR II 59; curator_summary=Encodes one of two Arabidopsis proteins with significant similarity to the histone fold TBP-associated factor TAF6. Mutants are embryo lethal and transmission of the mutant allele through the male gametophyte is significantly reduced. This is due to reduced pollen tube growth of the mutant.; conf_class=2; symbol=TAFII59; Alias=ATTAF6, EMB2781, EMBRYO DEFECTIVE 2781, TAF6, TBP-associated factor 6; full_name=TATA BOX ASSOCIATED FACTOR II 59; computational_description=TATA BOX ASSOCIATED FACTOR II 59 (TAFII59)%3B FUNCTIONS IN: RNA polymerase II transcription factor activity%2C transcription initiation factor activity%2C DNA binding%3B INVOLVED IN: pollen tube growth%2C transcription initiation%3B LOCATED IN: nucleus%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1546 (InterPro:IPR011442)%2C Histone-fold (InterPro:IPR009072)%2C TATA box binding protein associated factor (TAF) (InterPro:IPR004823)%3B BEST Arabidopsis thaliana protein match is: TBP-ASSOCIATED FACTOR 6B (TAIR:AT1G54360.1)%3B Has 496 Blast hits to 490 proteins in 183 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 209%3B Fungi - 144%3B Plants - 74%3B Viruses - 0%3B Other Eukaryotes - 69 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16039640, PMID:17340043, PMID:17526916, PMID:18315867, PMID:15527982, locus:2010667; locus_type=protein_coding
AT1G04960.1	chr1:001408021	0.0	C/1408021-1408200,1408458-1408514,1408617-1408694,1408797-1408829,1408931-1409005,1409352-1409441,1409528-1409629,1409756-1409823,1409952-1410033,1410185-1410318,1410619-1410673	AT1G04960.1 CDS AT1G04960 ID=AT1G04960.1; Parent=AT1G04960; Name=AT1G04960.1; Note=golgin family A protein (DUF1664); conf_class=2; computational_description=Protein of unknown function (DUF1664)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1664 (InterPro:IPR012458)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1664) (TAIR:AT1G27000.1)%3B Has 160 Blast hits to 159 proteins in 23 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 0%3B Fungi - 0%3B Plants - 152%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18650403, locus:2010602; locus_type=protein_coding
AT1G04960.2	chr1:001408021	0.0	C/1408021-1408200,1408458-1408514,1408617-1408694,1408797-1408829,1408931-1409005,1409352-1409441,1409528-1409629,1409756-1409823,1409952-1410033,1410185-1410424	AT1G04960.2 CDS AT1G04960 ID=AT1G04960.2; Parent=AT1G04960; Name=AT1G04960.2; Note=golgin family A protein (DUF1664); conf_class=3; computational_description=Protein of unknown function (DUF1664)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1664 (InterPro:IPR012458)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1664) (TAIR:AT1G27000.1)%3B Has 160 Blast hits to 159 proteins in 23 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 0%3B Fungi - 0%3B Plants - 152%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18650403, locus:2010602; locus_type=protein_coding
AT1G04970.1	chr1:001411216	0.0	W/1411216-1411623,1411915-1412054,1412160-1412511,1412656-1412904,1413017-1413142,1413240-1413431	AT1G04970.1 CDS AT1G04970 ID=AT1G04970.1; Parent=AT1G04970; Name=AT1G04970.1; Note=lipid-binding serum glycoprotein family protein; conf_class=2; computational_description=lipid-binding serum glycoprotein family protein%3B FUNCTIONS IN: lipid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%2C vacuole%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Bactericidal permeability-increasing protein%2C alpha/beta domain (InterPro:IPR017943)%2C Lipid-binding serum glycoprotein%2C N-terminal (InterPro:IPR017942)%2C Lipid-binding serum glycoprotein%2C C-terminal (InterPro:IPR001124)%3B BEST Arabidopsis thaliana protein match is: lipid-binding serum glycoprotein family protein (TAIR:AT3G20270.2)%3B Has 476 Blast hits to 472 proteins in 65 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 390%3B Fungi - 0%3B Plants - 59%3B Viruses - 0%3B Other Eukaryotes - 27 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15215502, PMID:18650403, PMID:18775970, PMID:20736450, locus:2010592; locus_type=protein_coding
AT1G04970.2	chr1:001411885	0.0	W/1411885-1412054,1412160-1412511,1412656-1412904,1413017-1413142,1413240-1413431	AT1G04970.2 CDS AT1G04970 ID=AT1G04970.2; Parent=AT1G04970; Name=AT1G04970.2; Note=lipid-binding serum glycoprotein family protein; conf_class=2; computational_description=lipid-binding serum glycoprotein family protein%3B FUNCTIONS IN: lipid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%2C vacuole%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Bactericidal permeability-increasing protein%2C alpha/beta domain (InterPro:IPR017943)%2C Lipid-binding serum glycoprotein%2C N-terminal (InterPro:IPR017942)%2C Lipid-binding serum glycoprotein%2C C-terminal (InterPro:IPR001124)%3B BEST Arabidopsis thaliana protein match is: lipid-binding serum glycoprotein family protein (TAIR:AT3G20270.2)%3B Has 476 Blast hits to 472 proteins in 65 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 390%3B Fungi - 0%3B Plants - 59%3B Viruses - 0%3B Other Eukaryotes - 27 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15215502, PMID:18650403, PMID:18775970, PMID:20736450, locus:2010592; locus_type=protein_coding
AT1G04970.3	chr1:001411885	0.0	W/1411885-1412054,1412160-1412511,1412656-1412904,1413017-1413142,1413240-1413431	AT1G04970.3 CDS AT1G04970 ID=AT1G04970.3; Parent=AT1G04970; Name=AT1G04970.3; Note=lipid-binding serum glycoprotein family protein; computational_description=lipid-binding serum glycoprotein family protein%3B FUNCTIONS IN: lipid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%2C vacuole%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Bactericidal permeability-increasing protein%2C alpha/beta domain (InterPro:IPR017943)%2C Lipid-binding serum glycoprotein%2C N-terminal (InterPro:IPR017942)%2C Lipid-binding serum glycoprotein%2C C-terminal (InterPro:IPR001124)%3B BEST Arabidopsis thaliana protein match is: lipid-binding serum glycoprotein family protein (TAIR:AT3G20270.2)%3B Has 476 Blast hits to 472 proteins in 65 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 390%3B Fungi - 0%3B Plants - 59%3B Viruses - 0%3B Other Eukaryotes - 27 (source: NCBI BLink).; Dbxref=PMID:15215502, PMID:18650403, PMID:18775970, PMID:20736450, locus:2010592; locus_type=protein_coding
AT1G04980.1	chr1:001413869	0.0	C/1413869-1414055,1414156-1414302,1414417-1414562,1414646-1414822,1414993-1415092,1415197-1415375,1415450-1415563,1415675-1415833,1415986-1416120	AT1G04980.1 CDS AT1G04980 ID=AT1G04980.1; Parent=AT1G04980; Name=AT1G04980.1; Note=PDI-like 2-2; curator_summary=Encodes a protein disulfide isomerase-like (PDIL) protein%2C a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol%2C beta-mercaptoethanol%2C and tunicamycin). AtIRE1-2 does not appear to be required for this response%2C but the atbzip60 mutant has a diminished response.; conf_class=2; symbol=PDIL2-2; Alias=ATPDI10, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, ATPDIL2-2, PDI-like 2-2, PDI10, PROTEIN DISULFIDE ISOMERASE; full_name=PDI-like 2-2; computational_description=PDI-like 2-2 (PDIL2-2)%3B CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335)%2C Disulphide isomerase (InterPro:IPR005788)%2C Thioredoxin domain (InterPro:IPR013766)%2C Thioredoxin%2C conserved site (InterPro:IPR017937)%2C Thioredoxin-like subdomain (InterPro:IPR006662)%2C Thioredoxin-like (InterPro:IPR017936)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B BEST Arabidopsis thaliana protein match is: PDI-like 2-3 (TAIR:AT2G32920.1)%3B Has 36254 Blast hits to 18629 proteins in 2906 species: Archae - 392%3B Bacteria - 18066%3B Metazoa - 5792%3B Fungi - 2053%3B Plants - 2624%3B Viruses - 46%3B Other Eukaryotes - 7281 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15047901, PMID:15684019, PMID:16287169, PMID:18574595, PMID:18650403, PMID:20736450, PMID:21277284, PMID:21909944, locus:2010577; locus_type=protein_coding
AT1G04985.1	chr1:001416563	0.0	C/1416563-1416779,1416869-1416978,1417326-1417390,1417974-1418046,1418175-1418291	AT1G04985.1 CDS AT1G04985 ID=AT1G04985.1; Parent=AT1G04985; Name=AT1G04985.1; Note=triacylglycerol lipase-like protein; conf_class=2; computational_description=unknown protein%3B Has 37 Blast hits to 37 proteins in 11 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 37%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, locus:2824357; locus_type=protein_coding
AT1G04985.2	chr1:001416563	0.0	C/1416563-1416779,1416869-1416978,1417326-1417406	AT1G04985.2 CDS AT1G04985 ID=AT1G04985.2; Parent=AT1G04985; Name=AT1G04985.2; Note=triacylglycerol lipase-like protein; computational_description=unknown protein%3B Has 37 Blast hits to 37 proteins in 11 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 37%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=PMID:18775970, locus:2824357; locus_type=protein_coding
AT1TE04620	chr1:001417569	0.0	W/1417569-1417699	AT1TE04620 transposable_element AT1TE04620 ID=AT1TE04620; Name=AT1TE04620; Alias=ATDNA1T9A
AT1G04990.1	chr1:001419368	0.0	C/1419368-1419658,1419787-1420032,1420104-1420373,1420448-1420564,1420825-1420881,1420973-1421130,1421379-1421454	AT1G04990.1 CDS AT1G04990 ID=AT1G04990.1; Parent=AT1G04990; Name=AT1G04990.1; Note=Zinc finger C-x8-C-x5-C-x3-H type family protein; conf_class=2; computational_description=Zinc finger C-x8-C-x5-C-x3-H type family protein%3B FUNCTIONS IN: zinc ion binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C CCCH-type (InterPro:IPR000571)%3B BEST Arabidopsis thaliana protein match is: zinc finger nuclease 2 (TAIR:AT2G32930.1)%3B Has 1789 Blast hits to 1100 proteins in 186 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 576%3B Fungi - 244%3B Plants - 789%3B Viruses - 0%3B Other Eukaryotes - 180 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16500995, PMID:18221561, PMID:18650403, PMID:18775970, locus:2010562; locus_type=protein_coding
AT1G04990.2	chr1:001419368	0.0	C/1419368-1419658,1419787-1420032,1420104-1420373,1420448-1420564,1420825-1420881,1420973-1421130,1421379-1421454	AT1G04990.2 CDS AT1G04990 ID=AT1G04990.2; Parent=AT1G04990; Name=AT1G04990.2; Note=Zinc finger C-x8-C-x5-C-x3-H type family protein; conf_class=6; computational_description=Zinc finger C-x8-C-x5-C-x3-H type family protein%3B FUNCTIONS IN: zinc ion binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C CCCH-type (InterPro:IPR000571)%3B BEST Arabidopsis thaliana protein match is: zinc finger nuclease 2 (TAIR:AT2G32930.1)%3B Has 1789 Blast hits to 1100 proteins in 186 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 576%3B Fungi - 244%3B Plants - 789%3B Viruses - 0%3B Other Eukaryotes - 180 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:16500995, PMID:18221561, PMID:18650403, PMID:18775970, locus:2010562; locus_type=protein_coding
AT1G04990.3	chr1:001419368	0.0	C/1419368-1419658,1419787-1420032,1420104-1420373,1420448-1420612	AT1G04990.3 CDS AT1G04990 ID=AT1G04990.3; Parent=AT1G04990; Name=AT1G04990.3; Note=Zinc finger C-x8-C-x5-C-x3-H type family protein; computational_description=Zinc finger C-x8-C-x5-C-x3-H type family protein%3B FUNCTIONS IN: zinc ion binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C CCCH-type (InterPro:IPR000571)%3B BEST Arabidopsis thaliana protein match is: zinc finger nuclease 2 (TAIR:AT2G32930.1)%3B Has 1789 Blast hits to 1100 proteins in 186 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 576%3B Fungi - 244%3B Plants - 789%3B Viruses - 0%3B Other Eukaryotes - 180 (source: NCBI BLink).; Dbxref=PMID:16500995, PMID:18221561, PMID:18650403, PMID:18775970, locus:2010562; locus_type=protein_coding
AT1G04990.4	chr1:001419368	0.0	C/1419368-1419658,1419847-1420032,1420104-1420373,1420448-1420612	AT1G04990.4 CDS AT1G04990 ID=AT1G04990.4; Parent=AT1G04990; Name=AT1G04990.4; Note=Zinc finger C-x8-C-x5-C-x3-H type family protein; computational_description=Zinc finger C-x8-C-x5-C-x3-H type family protein%3B FUNCTIONS IN: zinc ion binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C CCCH-type (InterPro:IPR000571)%3B BEST Arabidopsis thaliana protein match is: zinc finger nuclease 2 (TAIR:AT2G32930.1)%3B Has 1789 Blast hits to 1100 proteins in 186 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 576%3B Fungi - 244%3B Plants - 789%3B Viruses - 0%3B Other Eukaryotes - 180 (source: NCBI BLink).; Dbxref=PMID:16500995, PMID:18221561, PMID:18650403, PMID:18775970, locus:2010562; locus_type=protein_coding
AT1G04990.5	chr1:001419368	0.0	C/1419368-1419658,1419847-1420032,1420104-1420373,1420448-1420564,1420825-1420881,1420973-1421130,1421379-1421454	AT1G04990.5 CDS AT1G04990 ID=AT1G04990.5; Parent=AT1G04990; Name=AT1G04990.5; Note=Zinc finger C-x8-C-x5-C-x3-H type family protein; computational_description=Zinc finger C-x8-C-x5-C-x3-H type family protein%3B FUNCTIONS IN: zinc ion binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C CCCH-type (InterPro:IPR000571)%3B BEST Arabidopsis thaliana protein match is: zinc finger nuclease 2 (TAIR:AT2G32930.1)%3B Has 1789 Blast hits to 1100 proteins in 186 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 576%3B Fungi - 244%3B Plants - 789%3B Viruses - 0%3B Other Eukaryotes - 180 (source: NCBI BLink).; Dbxref=PMID:16500995, PMID:18221561, PMID:18650403, PMID:18775970, locus:2010562; locus_type=protein_coding
AT1G04990.6	chr1:001419368	0.0	C/1419368-1419658,1419787-1420032,1420104-1420373,1420448-1420564,1420825-1420881,1420973-1421130,1421379-1421454	AT1G04990.6 CDS AT1G04990 ID=AT1G04990.6; Parent=AT1G04990; Name=AT1G04990.6; Note=Zinc finger C-x8-C-x5-C-x3-H type family protein; Dbxref=PMID:16500995, PMID:18221561, PMID:18650403, PMID:18775970, locus:2010562; computational_description=Zinc finger C-x8-C-x5-C-x3-H type family protein%3B FUNCTIONS IN: zinc ion binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C CCCH-type (InterPro:IPR000571)%3B BEST Arabidopsis thaliana protein match is: zinc finger nuclease 2 (TAIR:AT2G32930.1)%3B Has 1789 Blast hits to 1100 proteins in 186 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 576%3B Fungi - 244%3B Plants - 789%3B Viruses - 0%3B Other Eukaryotes - 180 (source: NCBI BLink).; locus_type=protein_coding
AT1G05000.1	chr1:001425660	0.0	W/1425660-1425925,1426016-1426109,1427899-1427956,1428071-1428114,1428208-1428393	AT1G05000.1 CDS AT1G05000 ID=AT1G05000.1; Parent=AT1G05000; Name=AT1G05000.1; Note=Phosphotyrosine protein phosphatases superfamily protein; curator_summary=Encodes an atypical dual-speci%26#64257%3Bcity phosphatase.; conf_class=1; symbol=PFA-DSP1; Alias=AtPFA-DSP1; full_name=plant and fungi atypical dual-speci%26#64257%3Bcity phosphatase 1; computational_description=Phosphotyrosine protein phosphatases superfamily protein%3B FUNCTIONS IN: phosphatase activity%2C protein tyrosine phosphatase activity%2C phosphoprotein phosphatase activity%3B INVOLVED IN: dephosphorylation%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase%2C active site (InterPro:IPR016130)%2C Protein-tyrosine phosphatase%2C dual specificity phosphatase%2C eukaryotic (InterPro:IPR020428)%2C Protein-tyrosine phosphatase%2C SIW14-like (InterPro:IPR004861)%3B BEST Arabidopsis thaliana protein match is: Phosphotyrosine protein phosphatases superfamily protein (TAIR:AT2G32960.1)%3B Has 669 Blast hits to 655 proteins in 149 species: Archae - 0%3B Bacteria - 50%3B Metazoa - 4%3B Fungi - 355%3B Plants - 145%3B Viruses - 0%3B Other Eukaryotes - 115 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12068129, PMID:17085508, PMID:18156295, PMID:18650403, PMID:21333657, PMID:21409566, locus:2205513; locus_type=protein_coding
AT1G05000.2	chr1:001425660	0.0	W/1425660-1425925,1426016-1426109,1426235-1426330,1427899-1427956,1428071-1428114,1428208-1428393	AT1G05000.2 CDS AT1G05000 ID=AT1G05000.2; Parent=AT1G05000; Name=AT1G05000.2; Note=Phosphotyrosine protein phosphatases superfamily protein; curator_summary=Encodes an atypical dual-speci%26#64257%3Bcity phosphatase.; conf_class=2; symbol=PFA-DSP1; Alias=AtPFA-DSP1; full_name=plant and fungi atypical dual-speci%26#64257%3Bcity phosphatase 1; computational_description=Phosphotyrosine protein phosphatases superfamily protein%3B FUNCTIONS IN: phosphatase activity%2C protein tyrosine phosphatase activity%2C phosphoprotein phosphatase activity%3B INVOLVED IN: dephosphorylation%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase%2C active site (InterPro:IPR016130)%2C Protein-tyrosine phosphatase%2C dual specificity phosphatase%2C eukaryotic (InterPro:IPR020428)%2C Protein-tyrosine phosphatase%2C SIW14-like (InterPro:IPR004861)%3B BEST Arabidopsis thaliana protein match is: Phosphotyrosine protein phosphatases superfamily protein (TAIR:AT2G32960.1)%3B Has 669 Blast hits to 655 proteins in 149 species: Archae - 0%3B Bacteria - 50%3B Metazoa - 4%3B Fungi - 355%3B Plants - 145%3B Viruses - 0%3B Other Eukaryotes - 115 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12068129, PMID:17085508, PMID:18156295, PMID:18650403, PMID:21333657, PMID:21409566, locus:2205513; locus_type=protein_coding
AT1G05000.3	chr1:001425660	0.0	W/1425660-1425925,1426016-1426109,1426235-1426399	AT1G05000.3 CDS AT1G05000 ID=AT1G05000.3; Parent=AT1G05000; Name=AT1G05000.3; Note=Phosphotyrosine protein phosphatases superfamily protein; symbol=PFA-DSP1; Alias=AtPFA-DSP1; full_name=plant and fungi atypical dual-speci%26#64257%3Bcity phosphatase 1; curator_summary=Encodes an atypical dual-speci%26#64257%3Bcity phosphatase.; computational_description=Phosphotyrosine protein phosphatases superfamily protein%3B FUNCTIONS IN: phosphatase activity%2C protein tyrosine phosphatase activity%2C phosphoprotein phosphatase activity%3B INVOLVED IN: dephosphorylation%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase%2C active site (InterPro:IPR016130)%2C Protein-tyrosine phosphatase%2C dual specificity phosphatase%2C eukaryotic (InterPro:IPR020428)%2C Protein-tyrosine phosphatase%2C SIW14-like (InterPro:IPR004861)%3B BEST Arabidopsis thaliana protein match is: Phosphotyrosine protein phosphatases superfamily protein (TAIR:AT2G32960.1)%3B Has 669 Blast hits to 655 proteins in 149 species: Archae - 0%3B Bacteria - 50%3B Metazoa - 4%3B Fungi - 355%3B Plants - 145%3B Viruses - 0%3B Other Eukaryotes - 115 (source: NCBI BLink).; Dbxref=PMID:12068129, PMID:17085508, PMID:18156295, PMID:18650403, PMID:21333657, PMID:21409566, locus:2205513; locus_type=protein_coding
AT1G05005.1	chr1:001429048	0.0	W/1429048-1429261,1429413-1429870,1430045-1430056	AT1G05005.1 CDS AT1G05005 ID=AT1G05005.1; Parent=AT1G05005; Name=AT1G05005.1; Note=PPR containing protein; locus_type=protein_coding
AT1G04307.1	chr1:001429442	0.0	C/1429442-1429889	AT1G04307.1 lnc_RNA AT1G04307 ID=AT1G04307.1; Parent=AT1G04307; Name=AT1G04307.1; locus_type=long_noncoding_rna
AT1TE04660	chr1:001430272	0.0	C/1430272-1430424	AT1TE04660 transposable_element AT1TE04660 ID=AT1TE04660; Name=AT1TE04660; Alias=TAG2
AT1TE04665	chr1:001430437	0.0	W/1430437-1430836	AT1TE04665 transposable_element AT1TE04665 ID=AT1TE04665; Name=AT1TE04665; Alias=SIMPLEGUY1
AT1TE04670	chr1:001430837	0.0	W/1430837-1430859	AT1TE04670 transposable_element AT1TE04670 ID=AT1TE04670; Name=AT1TE04670; Alias=SIMPLEGUY1
AT1TE04675	chr1:001430869	0.0	C/1430869-1431028	AT1TE04675 transposable_element AT1TE04675 ID=AT1TE04675; Name=AT1TE04675; Alias=TAG2
AT1G05010.1	chr1:001431419	0.0	C/1431419-1431724,1431807-1432140,1432292-1432518,1432591-1432695	AT1G05010.1 CDS AT1G05010 ID=AT1G05010.1; Parent=AT1G05010; Name=AT1G05010.1; Note=ethylene-forming enzyme; curator_summary=Encodes 1-aminocyclopropane-1-carboxylate oxidase; conf_class=2; symbol=EFE; Alias=ACO4, ethylene forming enzyme, EAT1; full_name=ethylene-forming enzyme; computational_description=ethylene-forming enzyme (EFE)%3B FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate oxidase activity%3B INVOLVED IN: response to fungus%2C ethylene biosynthetic process%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123)%3B BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G12010.1)%3B Has 8587 Blast hits to 8552 proteins in 1009 species: Archae - 0%3B Bacteria - 1142%3B Metazoa - 103%3B Fungi - 1035%3B Plants - 4924%3B Viruses - 0%3B Other Eukaryotes - 1383 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:8262380, PMID:12368493, PMID:16311726, PMID:17993622, PMID:18650403, PMID:19220788, PMID:19560230, PMID:20234049, PMID:20736450, PMID:25082369, locus:2205568; locus_type=protein_coding
AT1G05020.1	chr1:001435384	0.0	C/1435384-1437345	AT1G05020.1 CDS AT1G05020 ID=AT1G05020.1; Parent=AT1G05020; Name=AT1G05020.1; Note=ENTH/ANTH/VHS superfamily protein; conf_class=1; computational_description=ENTH/ANTH/VHS superfamily protein%3B FUNCTIONS IN: phospholipid binding%2C clathrin binding%2C binding%2C phosphatidylinositol binding%3B INVOLVED IN: clathrin coat assembly%3B LOCATED IN: clathrin coat%3B EXPRESSED IN: 11 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%2C petal differentiation and expansion stage%2C LP.08 eight leaves visible%3B CONTAINS InterPro DOMAIN/s: Epsin-like%2C N-terminal (InterPro:IPR013809)%2C ANTH (InterPro:IPR011417)%2C ENTH/VHS (InterPro:IPR008942)%2C Clathrin adaptor%2C phosphoinositide-binding%2C GAT-like (InterPro:IPR014712)%3B BEST Arabidopsis thaliana protein match is: ENTH/ANTH/VHS superfamily protein (TAIR:AT4G32285.2)%3B Has 663 Blast hits to 661 proteins in 84 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 204%3B Fungi - 47%3B Plants - 394%3B Viruses - 0%3B Other Eukaryotes - 16 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14500793, PMID:15054111, PMID:18775970, locus:2205558; locus_type=protein_coding
AT1G05030.1	chr1:001438324	0.0	C/1438324-1438515,1438596-1438710,1438811-1438899,1438985-1439058,1439158-1439304,1439502-1439658,1439735-1439828,1439898-1440010,1440234-1440333,1440446-1440646,1441003-1441126,1441217-1441385	AT1G05030.1 CDS AT1G05030 ID=AT1G05030.1; Parent=AT1G05030; Name=AT1G05030.1; Note=Major facilitator superfamily protein; conf_class=1; computational_description=Major facilitator superfamily protein%3B FUNCTIONS IN: carbohydrate transmembrane transporter activity%2C sugar:hydrogen symporter activity%3B INVOLVED IN: transport%2C transmembrane transport%3B LOCATED IN: mitochondrion%2C integral to membrane%2C membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Sugar transporter%2C conserved site (InterPro:IPR005829)%2C Major facilitator superfamily (InterPro:IPR020846)%2C Sugar/inositol transporter (InterPro:IPR003663)%2C General substrate transporter (InterPro:IPR005828)%2C Major facilitator superfamily%2C general substrate transporter (InterPro:IPR016196)%3B BEST Arabidopsis thaliana protein match is: plastidic GLC translocator (TAIR:AT5G16150.3)%3B Has 32095 Blast hits to 31550 proteins in 2260 species: Archae - 588%3B Bacteria - 15264%3B Metazoa - 5199%3B Fungi - 6752%3B Plants - 2455%3B Viruses - 0%3B Other Eukaryotes - 1837 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12913156, PMID:14576160, PMID:23383346, locus:2205548; locus_type=protein_coding
AT1G05030.2	chr1:001438324	0.0	C/1438324-1438515,1438596-1438710,1438811-1438899,1438985-1439058,1439158-1439304,1439502-1439658,1439735-1439828,1439898-1440010,1440234-1440333,1440446-1440659,1441003-1441126	AT1G05030.2 CDS AT1G05030 ID=AT1G05030.2; Parent=AT1G05030; Name=AT1G05030.2; Note=Major facilitator superfamily protein; computational_description=Major facilitator superfamily protein%3B FUNCTIONS IN: carbohydrate transmembrane transporter activity%2C sugar:hydrogen symporter activity%3B INVOLVED IN: transport%2C transmembrane transport%3B LOCATED IN: mitochondrion%2C integral to membrane%2C membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Sugar transporter%2C conserved site (InterPro:IPR005829)%2C Major facilitator superfamily (InterPro:IPR020846)%2C Sugar/inositol transporter (InterPro:IPR003663)%2C General substrate transporter (InterPro:IPR005828)%2C Major facilitator superfamily%2C general substrate transporter (InterPro:IPR016196)%3B BEST Arabidopsis thaliana protein match is: plastidic GLC translocator (TAIR:AT5G16150.3)%3B Has 32095 Blast hits to 31550 proteins in 2260 species: Archae - 588%3B Bacteria - 15264%3B Metazoa - 5199%3B Fungi - 6752%3B Plants - 2455%3B Viruses - 0%3B Other Eukaryotes - 1837 (source: NCBI BLink).; Dbxref=PMID:12913156, PMID:14576160, PMID:23383346, locus:2205548; locus_type=protein_coding
AT1TE04700	chr1:001441515	0.0	W/1441515-1441645	AT1TE04700 transposable_element AT1TE04700 ID=AT1TE04700; Name=AT1TE04700; Alias=ATDNAI27T9A
AT1TE04705	chr1:001441646	0.0	W/1441646-1441670	AT1TE04705 transposable_element AT1TE04705 ID=AT1TE04705; Name=AT1TE04705; Alias=VANDAL5
AT1TE04710	chr1:001441741	0.0	W/1441741-1441910,1442484-1442976	AT1TE04710 transposable_element AT1TE04710 ID=AT1TE04710; Name=AT1TE04710; Alias=ATDNAI27T9B
AT1TE04715	chr1:001442977	0.0	W/1442977-1443007	AT1TE04715 transposable_element AT1TE04715 ID=AT1TE04715; Name=AT1TE04715; Alias=ATDNAI27T9B
AT1TE04720	chr1:001443562	0.0	W/1443562-1443971	AT1TE04720 transposable_element AT1TE04720 ID=AT1TE04720; Name=AT1TE04720; Alias=ATDNAI27T9C
AT1TE04725	chr1:001444364	0.0	W/1444364-1444532	AT1TE04725 transposable_element AT1TE04725 ID=AT1TE04725; Name=AT1TE04725; Alias=ATDNAI27T9B
AT1G04313.1	chr1:001444692	0.0	C/1444692-1445039	AT1G04313.1 lnc_RNA AT1G04313 ID=AT1G04313.1; Parent=AT1G04313; Name=AT1G04313.1; locus_type=long_noncoding_rna
AT1G05035.1	chr1:001444983	0.0	W/1444983-1445224,1445625-1445669,1445787-1445832,1446087-1446116	AT1G05035.1 CDS AT1G05035 ID=AT1G05035.1; Parent=AT1G05035; Name=AT1G05035.1; Note=hypothetical protein; locus_type=protein_coding
AT1G04317.1	chr1:001446155	0.0	W/1446155-1447314	AT1G04317.1 transcript_region AT1G04317 ID=AT1G04317.1; Parent=AT1G04317; computational_description=novel transcribed region%3B detected in carpel%2C leaf%2C light-grown seedling%2C flower%2C aerial%2C shoot apical meristem; Name=AT1G04317.1; locus_type=novel_transcribed_region
AT1G04317.2	chr1:001446234	0.0	W/1446234-1447133	AT1G04317.2 transcript_region AT1G04317 ID=AT1G04317.2; Parent=AT1G04317; computational_description=novel transcribed region%3B detected in carpel%2C leaf%2C light-grown seedling%2C flower%2C aerial%2C shoot apical meristem; Name=AT1G04317.2; locus_type=novel_transcribed_region
AT1G04323.1	chr1:001446835	0.0	W/1446835-1447073	AT1G04323.1 lnc_RNA AT1G04323 ID=AT1G04323.1; Parent=AT1G04323; Name=AT1G04323.1; locus_type=long_noncoding_rna
AT1G05040.1	chr1:001447758	0.0	C/1447758-1447847,1447954-1448056,1448141-1448448	AT1G05040.1 CDS AT1G05040 ID=AT1G05040.1; Parent=AT1G05040; Name=AT1G05040.1; Note=UBA-like domain protein; conf_class=4; computational_description=BEST Arabidopsis thaliana protein match is: Ubiquitin-associated (UBA) protein (TAIR:AT2G33010.1)%3B Has 14 Blast hits to 12 proteins in 3 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 14%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=***; Dbxref=locus:2205518; locus_type=protein_coding
AT1G05040.2	chr1:001447891	0.0	C/1447891-1448056,1448141-1448448	AT1G05040.2 CDS AT1G05040 ID=AT1G05040.2; Parent=AT1G05040; Name=AT1G05040.2; Note=UBA-like domain protein; conf_class=4; computational_description=BEST Arabidopsis thaliana protein match is: Ubiquitin-associated (UBA) protein (TAIR:AT2G33010.1)%3B Has 14 Blast hits to 12 proteins in 3 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 14%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=***; Dbxref=locus:2205518; locus_type=protein_coding
AT1G05055.1	chr1:001448913	0.0	C/1448913-1449061,1449237-1449615,1449713-1450174,1450577-1450852	AT1G05055.1 CDS AT1G05055 ID=AT1G05055.1; Parent=AT1G05055; Name=AT1G05055.1; Note=general transcription factor II H2; curator_summary=Member of transcription factor TFIIH complex. Involved in transcription and DNA repair and interacts with AtXPD.; conf_class=2; symbol=GTF2H2; Alias=ATGTF2H2; full_name=general transcription factor II H2; computational_description=general transcription factor II H2 (GTF2H2)%3B CONTAINS InterPro DOMAIN/s: Ssl1-like (InterPro:IPR007198)%2C TFIIH basal transcription factor complex%2C subunit SSL1 (InterPro:IPR012170)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C TFIIH C1-like%2C C-terminal (InterPro:IPR004595)%2C von Willebrand factor%2C type A (InterPro:IPR002035)%3B Has 470 Blast hits to 463 proteins in 203 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 183%3B Fungi - 160%3B Plants - 39%3B Viruses - 0%3B Other Eukaryotes - 88 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15645454, PMID:16623910, PMID:18315867, locus:504956103; locus_type=protein_coding
AT1G05060.1	chr1:001451255	0.0	C/1451255-1451362,1451451-1451537,1451665-1451756,1452295-1452419,1452509-1452858	AT1G05060.1 CDS AT1G05060 ID=AT1G05060.1; Parent=AT1G05060; Name=AT1G05060.1; Note=coiled-coil protein; conf_class=2; computational_description=unknown protein%3B Has 34 Blast hits to 34 proteins in 13 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 34%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12368499, PMID:16510518, PMID:18650403, PMID:18775970, PMID:20736450, locus:2205553; locus_type=protein_coding
AT1G05061.1	chr1:001453045	0.0	C/1453045-1454691	AT1G05061.1 pseudogenic_transcript AT1G05061 ID=AT1G05061.1; Parent=AT1G05061; Name=AT1G05061.1; curator_summary=Pseudogene of AT2G32630%3B pentatricopeptide (PPR) repeat-containing protein; Note=pseudogene; Dbxref=locus:5019474605; computational_description=pseudogene of Pentatricopeptide repeat (PPR-like) superfamily protein; locus_type=pseudogene
AT1G05065.1	chr1:001454969	0.0	C/1454969-1455220	AT1G05065.1 CDS AT1G05065 ID=AT1G05065.1; Parent=AT1G05065; Name=AT1G05065.1; Note=CLAVATA3/ESR-RELATED 20; curator_summary=Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon.; conf_class=1; symbol=CLE20; full_name=CLAVATA3/ESR-RELATED 20; computational_description=CLAVATA3/ESR-RELATED 20 (CLE20)%3B Has 7 Blast hits to 7 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 7%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11457943, PMID:12602871, PMID:16489133, PMID:20697738, PMID:20884811, PMID:21270538, locus:504956102; locus_type=protein_coding
AT1G05070.1	chr1:001457172	0.0	C/1457172-1457518,1457618-1457641,1458348-1458531	AT1G05070.1 CDS AT1G05070 ID=AT1G05070.1; Parent=AT1G05070; Name=AT1G05070.1; Note=transmembrane protein%2C putative (DUF1068); conf_class=2; computational_description=Protein of unknown function (DUF1068)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1068 (InterPro:IPR010471)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1068) (TAIR:AT2G32580.1)%3B Has 119 Blast hits to 119 proteins in 15 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 0%3B Fungi - 0%3B Plants - 116%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12093376, PMID:16618929, PMID:16829591, PMID:20736450, locus:2205543; locus_type=protein_coding
AT1G05080.1	chr1:001459091	0.0	W/1459091-1459978,1460063-1460197,1460283-1460579	AT1G05080.1 CDS AT1G05080 ID=AT1G05080.1; Parent=AT1G05080; Name=AT1G05080.1; Note=F-box/RNI-like/FBD-like domains-containing protein; conf_class=9; computational_description=F-box/RNI-like/FBD-like domains-containing protein%3B CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596)%2C F-box domain%2C cyclin-like (InterPro:IPR001810)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%2C FBD-like (InterPro:IPR006566)%2C Leucine-rich repeat 2 (InterPro:IPR013101)%3B BEST Arabidopsis thaliana protein match is: Protein with RNI-like/FBD-like domains (TAIR:AT5G44850.1)%3B Has 1798 Blast hits to 1750 proteins in 26 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1794%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=*; Dbxref=PMID:20736450, locus:2205533; locus_type=protein_coding
AT1G05085.1	chr1:001460988	0.0	W/1460988-1461125,1461215-1461264,1461395-1461552,1461642-1461670	AT1G05085.1 CDS AT1G05085 ID=AT1G05085.1; Parent=AT1G05085; Name=AT1G05085.1; Note=hypothetical protein; conf_class=7; computational_description=unknown protein%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).; conf_rating=**; Dbxref=locus:1006230781; locus_type=protein_coding
AT1G04327.1	chr1:001461934	0.0	W/1461934-1462157	AT1G04327.1 lnc_RNA AT1G04327 ID=AT1G04327.1; Parent=AT1G04327; Name=AT1G04327.1; locus_type=long_noncoding_rna
AT1G04333.1	chr1:001462043	0.0	C/1462043-1462340	AT1G04333.1 lnc_RNA AT1G04333 ID=AT1G04333.1; Parent=AT1G04333; Name=AT1G04333.1; locus_type=long_noncoding_rna
AT1G05087.1	chr1:001463202	0.0	W/1463202-1463528,1463649-1464119	AT1G05087.1 CDS AT1G05087 ID=AT1G05087.1; Parent=AT1G05087; Name=AT1G05087.1; Note=dentin sialophosphoprotein; locus_type=protein_coding
AT1G05087.2	chr1:001463652	0.0	W/1463652-1464119	AT1G05087.2 CDS AT1G05087 ID=AT1G05087.2; Parent=AT1G05087; Name=AT1G05087.2; Note=dentin sialophosphoprotein; locus_type=protein_coding
AT1G05090.1	chr1:001464288	0.0	W/1464288-1465324,1465448-1465622	AT1G05090.1 CDS AT1G05090 ID=AT1G05090.1; Parent=AT1G05090; Name=AT1G05090.1; Note=dentin sialophosphoprotein-like protein; conf_class=6; computational_description=dentin sialophosphoprotein-related%3B BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-related (TAIR:AT4G20720.1)%3B Has 3598 Blast hits to 1413 proteins in 251 species: Archae - 2%3B Bacteria - 2631%3B Metazoa - 338%3B Fungi - 185%3B Plants - 102%3B Viruses - 1%3B Other Eukaryotes - 339 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:14671323, PMID:16299182, PMID:17434984, PMID:23344714, locus:2205528; locus_type=protein_coding
AT1G05100.1	chr1:001469679	0.0	W/1469679-1470698	AT1G05100.1 CDS AT1G05100 ID=AT1G05100.1; Parent=AT1G05100; Name=AT1G05100.1; Note=mitogen-activated protein kinase kinase kinase 18; curator_summary=member of MEKK subfamily; conf_class=1; symbol=MAPKKK18; full_name=mitogen-activated protein kinase kinase kinase 18; computational_description=mitogen-activated protein kinase kinase kinase 18 (MAPKKK18)%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B EXPRESSED IN: 6 plant structures%3B EXPRESSED DURING: 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: mitogen-activated protein kinase kinase kinase 17 (TAIR:AT2G32510.1)%3B Has 120072 Blast hits to 118882 proteins in 4556 species: Archae - 119%3B Bacteria - 13343%3B Metazoa - 45257%3B Fungi - 11715%3B Plants - 30592%3B Viruses - 483%3B Other Eukaryotes - 18563 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12432076, PMID:14973164, PMID:15047901, PMID:16258017, PMID:17304219, PMID:18835996, PMID:21477822, PMID:25680457, locus:2205523; locus_type=protein_coding
AT1G05120.1	chr1:001471624	0.0	C/1471624-1471696,1471780-1471860,1471948-1472036,1472130-1472282,1472373-1472477,1472603-1472833,1473009-1473131,1473238-1473307,1473394-1473479,1473671-1473817,1473921-1473984,1474095-1474168,1474253-1474375,1474596-1475539,1475631-1475723,1476022-1476067	AT1G05120.1 CDS AT1G05120 ID=AT1G05120.1; Parent=AT1G05120; Name=AT1G05120.1; Note=Helicase protein with RING/U-box domain-containing protein; conf_class=2; computational_description=Helicase protein with RING/U-box domain%3B FUNCTIONS IN: helicase activity%2C DNA binding%2C zinc ion binding%2C ATP binding%2C nucleic acid binding%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type%2C conserved site (InterPro:IPR017907)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%2C DEAD-like helicase%2C N-terminal (InterPro:IPR014001)%2C DNA/RNA helicase%2C C-terminal (InterPro:IPR001650)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain (InterPro:IPR014021)%2C SNF2-related (InterPro:IPR000330)%3B BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G02670.1)%3B Has 29218 Blast hits to 14448 proteins in 1607 species: Archae - 124%3B Bacteria - 8622%3B Metazoa - 6656%3B Fungi - 6694%3B Plants - 2674%3B Viruses - 189%3B Other Eukaryotes - 4259 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11983057, PMID:12609051, PMID:15645454, PMID:16489130, PMID:18775970, locus:2207175; locus_type=protein_coding
AT1G05120.2	chr1:001471624	0.0	C/1471624-1471696,1471780-1471860,1471948-1472036,1472130-1472282,1472373-1472477,1472603-1472833,1473009-1473131,1473238-1473307,1473394-1473479,1473671-1473817,1473921-1473984,1474095-1474168,1474253-1474375,1474596-1475539,1475631-1475723,1476022-1476196	AT1G05120.2 CDS AT1G05120 ID=AT1G05120.2; Parent=AT1G05120; Name=AT1G05120.2; Note=Helicase protein with RING/U-box domain-containing protein; computational_description=Helicase protein with RING/U-box domain%3B FUNCTIONS IN: helicase activity%2C DNA binding%2C zinc ion binding%2C ATP binding%2C nucleic acid binding%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type%2C conserved site (InterPro:IPR017907)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%2C DEAD-like helicase%2C N-terminal (InterPro:IPR014001)%2C DNA/RNA helicase%2C C-terminal (InterPro:IPR001650)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain (InterPro:IPR014021)%2C SNF2-related (InterPro:IPR000330)%3B BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G02670.1)%3B Has 29218 Blast hits to 14448 proteins in 1607 species: Archae - 124%3B Bacteria - 8622%3B Metazoa - 6656%3B Fungi - 6694%3B Plants - 2674%3B Viruses - 189%3B Other Eukaryotes - 4259 (source: NCBI BLink).; Dbxref=PMID:11983057, PMID:12609051, PMID:15645454, PMID:16489130, PMID:18775970, locus:2207175; locus_type=protein_coding
AT1TE04830	chr1:001476478	0.0	W/1476478-1476716	AT1TE04830 transposable_element AT1TE04830 ID=AT1TE04830; Name=AT1TE04830; Alias=ATDNATA1
AT1G05135.1	chr1:001477487	0.0	C/1477487-1478900	AT1G05135.1 pseudogenic_transcript AT1G05135 ID=AT1G05135.1; Parent=AT1G05135; Name=AT1G05135.1; curator_summary=pseudogene of unknown protein; Note=pseudogene; computational_description=expressed protein%2C isoform contains a non-consensus TG acceptor site at intron.; Dbxref=PMID:16531467, PMID:16531467, locus:1005716660; locus_type=pseudogene
AT1TE04835	chr1:001477673	0.0	C/1477673-1478083	AT1TE04835 transposable_element AT1TE04835 ID=AT1TE04835; Name=AT1TE04835; Alias=ATGP1
AT1TE04840	chr1:001478084	0.0	C/1478084-1478455	AT1TE04840 transposable_element AT1TE04840 ID=AT1TE04840; Name=AT1TE04840; Alias=ATGP1
AT1G05136.1	chr1:001478923	0.0	W/1478923-1479063	AT1G05136.1 CDS AT1G05136 ID=AT1G05136.1; Parent=AT1G05136; Name=AT1G05136.1; Note=hypothetical protein; conf_class=9; computational_description=unknown protein%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=*; Dbxref=PMID:17395691, locus:4515102498; locus_type=protein_coding
AT1G08865.1	chr1:001480118	0.0	C/1480118-1480940	AT1G08865.1 transcript_region AT1G08865 ID=AT1G08865.1; Parent=AT1G08865; computational_description=novel transcribed region; Name=AT1G08865.1; locus_type=novel_transcribed_region
AT1G08865.2	chr1:001480157	0.0	C/1480157-1480777	AT1G08865.2 transcript_region AT1G08865 ID=AT1G08865.2; Parent=AT1G08865; computational_description=novel transcribed region; Name=AT1G08865.2; locus_type=novel_transcribed_region
AT1G05140.1	chr1:001482681	0.0	W/1482681-1484006	AT1G05140.1 CDS AT1G05140 ID=AT1G05140.1; Parent=AT1G05140; Name=AT1G05140.1; Note=Peptidase M50 family protein; conf_class=1; computational_description=Peptidase M50 family protein%3B FUNCTIONS IN: metalloendopeptidase activity%3B INVOLVED IN: proteolysis%3B LOCATED IN: chloroplast%2C plastid%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase M50 (InterPro:IPR008915)%2C PDZ/DHR/GLGF (InterPro:IPR001478)%2C Peptidase M50%2C putative membrane-associated zinc metallopeptidase (InterPro:IPR004387)%3B BEST Arabidopsis thaliana protein match is: ARABIDOPSIS SERIN PROTEASE (TAIR:AT2G32480.1)%3B Has 10190 Blast hits to 7652 proteins in 2240 species: Archae - 41%3B Bacteria - 6892%3B Metazoa - 13%3B Fungi - 4%3B Plants - 72%3B Viruses - 0%3B Other Eukaryotes - 3168 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:10891285, PMID:12185496, PMID:14576160, PMID:15659096, PMID:20736450, locus:2207145; locus_type=protein_coding
AT1G05150.1	chr1:001484280	0.0	C/1484280-1486706	AT1G05150.1 CDS AT1G05150 ID=AT1G05150.1; Parent=AT1G05150; Name=AT1G05150.1; Note=Calcium-binding tetratricopeptide family protein; conf_class=1; computational_description=Calcium-binding tetratricopeptide family protein%3B FUNCTIONS IN: binding%2C zinc ion binding%2C calcium ion binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440)%2C Tetratricopeptide-like helical (InterPro:IPR011990)%2C EF-HAND 2 (InterPro:IPR018249)%2C Zinc finger%2C ZZ-type (InterPro:IPR000433)%2C Tetratricopeptide repeat-containing (InterPro:IPR013026)%2C Tetratricopeptide repeat (InterPro:IPR019734)%3B BEST Arabidopsis thaliana protein match is: Calcium-binding tetratricopeptide family protein (TAIR:AT2G32450.1)%3B Has 35451 Blast hits to 16647 proteins in 1701 species: Archae - 1586%3B Bacteria - 18304%3B Metazoa - 4207%3B Fungi - 680%3B Plants - 951%3B Viruses - 0%3B Other Eukaryotes - 9723 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12372144, PMID:12644654, PMID:14576160, PMID:16635983, PMID:17586839, locus:2207255; locus_type=protein_coding
AT1G05160.1	chr1:001487640	0.0	C/1487640-1487730,1487812-1487936,1488019-1488125,1488220-1488298,1488390-1488479,1488561-1488824,1488909-1489386,1489590-1489828	AT1G05160.1 CDS AT1G05160 ID=AT1G05160.1; Parent=AT1G05160; Name=AT1G05160.1; Note=cytochrome P450%2C family 88%2C subfamily A%2C polypeptide 3; curator_summary=Encodes an ent-kaurenoic acid hydroxylase%2C a member of the CYP88A cytochrome p450 family.; conf_class=4; symbol=CYP88A3; Alias=ATKAO1, KAO1, ENT-KAURENOIC ACID OXYDASE 1; full_name=cytochrome P450%2C family 88%2C subfamily A%2C polypeptide 3; computational_description=cytochrome P450%2C family 88%2C subfamily A%2C polypeptide 3 (CYP88A3)%3B CONTAINS InterPro DOMAIN/s: Cytochrome P450%2C B-class (InterPro:IPR002397)%2C Cytochrome P450 (InterPro:IPR001128)%2C Cytochrome P450%2C conserved site (InterPro:IPR017972)%3B BEST Arabidopsis thaliana protein match is: ent-kaurenoic acid hydroxylase 2 (TAIR:AT2G32440.2)%3B Has 36129 Blast hits to 36053 proteins in 1833 species: Archae - 82%3B Bacteria - 8530%3B Metazoa - 11168%3B Fungi - 6175%3B Plants - 8031%3B Viruses - 6%3B Other Eukaryotes - 2137 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:11172076, PMID:11722763, PMID:12777052, PMID:12837949, PMID:14729916, PMID:15923331, PMID:16045477, PMID:16258015, PMID:16709196, PMID:20008096, PMID:25146977, locus:2207240; locus_type=protein_coding
AT1G05160.2	chr1:001487640	0.0	C/1487640-1487730,1487812-1487936,1488019-1488125,1488220-1488298,1488390-1488479,1488561-1488824,1488909-1489386,1489590-1489828	AT1G05160.2 CDS AT1G05160 ID=AT1G05160.2; Parent=AT1G05160; Name=AT1G05160.2; Note=cytochrome P450%2C family 88%2C subfamily A%2C polypeptide 3; symbol=CYP88A3; Alias=ATKAO1, KAO1, ENT-KAURENOIC ACID OXYDASE 1; full_name=cytochrome P450%2C family 88%2C subfamily A%2C polypeptide 3; Dbxref=PMID:11172076, PMID:11722763, PMID:12777052, PMID:12837949, PMID:14729916, PMID:15923331, PMID:16045477, PMID:16258015, PMID:16709196, PMID:20008096, PMID:25146977, locus:2207240; curator_summary=Encodes an ent-kaurenoic acid hydroxylase%2C a member of the CYP88A cytochrome p450 family.; computational_description=cytochrome P450%2C family 88%2C subfamily A%2C polypeptide 3 (CYP88A3)%3B CONTAINS InterPro DOMAIN/s: Cytochrome P450%2C B-class (InterPro:IPR002397)%2C Cytochrome P450 (InterPro:IPR001128)%2C Cytochrome P450%2C conserved site (InterPro:IPR017972)%3B BEST Arabidopsis thaliana protein match is: ent-kaurenoic acid hydroxylase 2 (TAIR:AT2G32440.2)%3B Has 36129 Blast hits to 36053 proteins in 1833 species: Archae - 82%3B Bacteria - 8530%3B Metazoa - 11168%3B Fungi - 6175%3B Plants - 8031%3B Viruses - 6%3B Other Eukaryotes - 2137 (source: NCBI BLink).; locus_type=protein_coding
AT1G05170.2	chr1:001491460	0.0	C/1491460-1491608,1491940-1492049,1492136-1492261,1492336-1492423,1492528-1492648,1492733-1492805,1492889-1492952,1493029-1493240,1493328-1493401,1493495-1493591,1493822-1493931	AT1G05170.2 CDS AT1G05170 ID=AT1G05170.2; Parent=AT1G05170; Name=AT1G05170.2; Note=Galactosyltransferase family protein; conf_class=2; computational_description=Galactosyltransferase family protein%3B FUNCTIONS IN: transferase activity%2C transferring hexosyl groups%2C transferase activity%2C transferring glycosyl groups%3B INVOLVED IN: protein amino acid glycosylation%3B LOCATED IN: membrane%3B EXPRESSED IN: 14 plant structures%3B EXPRESSED DURING: 4 anthesis%2C C globular stage%2C 4 leaf senescence stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%3B CONTAINS InterPro DOMAIN/s: Glycosyl transferase%2C family 31 (InterPro:IPR002659)%3B BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein (TAIR:AT2G32430.1)%3B Has 1301 Blast hits to 1292 proteins in 94 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 677%3B Fungi - 0%3B Plants - 603%3B Viruses - 0%3B Other Eukaryotes - 21 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12913156, PMID:15341633, PMID:16463051, PMID:18548197, PMID:18849477, locus:2207225; locus_type=protein_coding
AT1G05170.1	chr1:001491929	0.0	C/1491929-1492049,1492136-1492261,1492336-1492423,1492528-1492648,1492733-1492805,1492889-1492952,1493029-1493240,1493328-1493401,1493495-1493591,1493822-1493931	AT1G05170.1 CDS AT1G05170 ID=AT1G05170.1; Parent=AT1G05170; Name=AT1G05170.1; Note=Galactosyltransferase family protein; conf_class=2; computational_description=Galactosyltransferase family protein%3B FUNCTIONS IN: transferase activity%2C transferring hexosyl groups%2C transferase activity%2C transferring glycosyl groups%3B INVOLVED IN: protein amino acid glycosylation%3B LOCATED IN: membrane%3B EXPRESSED IN: 14 plant structures%3B EXPRESSED DURING: 4 anthesis%2C C globular stage%2C 4 leaf senescence stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%3B CONTAINS InterPro DOMAIN/s: Glycosyl transferase%2C family 31 (InterPro:IPR002659)%3B BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein (TAIR:AT2G32430.1)%3B Has 1301 Blast hits to 1292 proteins in 94 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 677%3B Fungi - 0%3B Plants - 603%3B Viruses - 0%3B Other Eukaryotes - 21 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12913156, PMID:15341633, PMID:16463051, PMID:18548197, PMID:18849477, locus:2207225; locus_type=protein_coding
AT1G04337.1	chr1:001496735	0.0	W/1496735-1497102	AT1G04337.1 lnc_RNA AT1G04337 ID=AT1G04337.1; Parent=AT1G04337; Name=AT1G04337.1; locus_type=long_noncoding_rna
AT1G05180.1	chr1:001498357	0.0	C/1498357-1498440,1498566-1498746,1498836-1498919,1499229-1499314,1499456-1499618,1499706-1499779,1499891-1499979,1500156-1500249,1500332-1500485,1500600-1500679,1500804-1500914,1501167-1501330,1501425-1501597,1501690-1501775	AT1G05180.1 CDS AT1G05180 ID=AT1G05180.1; Parent=AT1G05180; Name=AT1G05180.1; Note=NAD(P)-binding Rossmann-fold superfamily protein; curator_summary=Encodes a subunit of the RUB1 activating enzyme that regulates the protein degradation activity of Skp1-Cullin-Fbox complexes%2C primarily%2C but not exclusively%2C affecting auxin responses. Acts alongside AS1 to exclude BP expression from leaves.; conf_class=2; symbol=AXR1; full_name=AUXIN RESISTANT 1; computational_description=AUXIN RESISTANT 1 (AXR1)%3B CONTAINS InterPro DOMAIN/s: Molybdenum cofactor biosynthesis%2C MoeB (InterPro:IPR009036)%2C UBA/THIF-type NAD/FAD binding fold (InterPro:IPR000594)%2C NAD(P)-binding domain (InterPro:IPR016040)%3B BEST Arabidopsis thaliana protein match is: AXR1-like (TAIR:AT2G32410.1)%3B Has 6539 Blast hits to 5902 proteins in 1375 species: Archae - 158%3B Bacteria - 2625%3B Metazoa - 1326%3B Fungi - 867%3B Plants - 442%3B Viruses - 0%3B Other Eukaryotes - 1121 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10944157, PMID:10611386, PMID:10557232, PMID:10068632, PMID:10036773, PMID:9951732, PMID:9761792, PMID:9624055, PMID:9436980, PMID:9108374, PMID:9092625, PMID:8979397, PMID:7658471, PMID:7642574, PMID:7766890, PMID:7704045, PMID:8321287, PMID:8278539, PMID:1983791, PMID:11027706, PMID:10322542, PMID:11884684, PMID:11161055, PMID:11485992, PMID:11543173, PMID:12011355, PMID:12172031, PMID:12242367, PMID:12232124, PMID:12226665, PMID:12215511, PMID:12447533, PMID:12376653, PMID:12368504, PMID:12468727, PMID:12566587, PMID:12682009, PMID:12690101, PMID:12730136, PMID:12887580, PMID:12953103, PMID:14550541, PMID:14617065, PMID:14660546, PMID:15020435, PMID:15208392, PMID:15181201, PMID:15829603, PMID:16020787, PMID:16039901, PMID:16453133, PMID:16816406, PMID:16971475, PMID:17216481, PMID:17655650, PMID:18434413, PMID:18583350, PMID:18650403, PMID:18832358, PMID:19176721, PMID:16174328, PMID:19825556, PMID:20040541, PMID:20044451, PMID:20154098, PMID:20421456, PMID:20669021, PMID:20844890, PMID:20826955, PMID:21311953, PMID:21466556, PMID:21937677, PMID:22007024, PMID:22576848, PMID:22658222, PMID:22824128, PMID:23279608, PMID:23319550, PMID:23288076, PMID:11137012, PMID:24596172, PMID:25059707, PMID:25116939, locus:2207220; locus_type=protein_coding
AT1G05180.2	chr1:001498357	0.0	C/1498357-1498440,1498566-1498746,1498836-1498919,1499229-1499314,1499456-1499618,1499706-1499779,1499891-1499979,1500156-1500249,1500332-1500485,1500600-1500679,1500804-1500914,1501167-1501190,1501289-1501330,1501425-1501469	AT1G05180.2 CDS AT1G05180 ID=AT1G05180.2; Parent=AT1G05180; Name=AT1G05180.2; Note=NAD(P)-binding Rossmann-fold superfamily protein; curator_summary=Encodes a subunit of the RUB1 activating enzyme that regulates the protein degradation activity of Skp1-Cullin-Fbox complexes%2C primarily%2C but not exclusively%2C affecting auxin responses. Acts alongside AS1 to exclude BP expression from leaves.; conf_class=6; symbol=AXR1; full_name=AUXIN RESISTANT 1; computational_description=AUXIN RESISTANT 1 (AXR1)%3B CONTAINS InterPro DOMAIN/s: Molybdenum cofactor biosynthesis%2C MoeB (InterPro:IPR009036)%2C UBA/THIF-type NAD/FAD binding fold (InterPro:IPR000594)%2C NAD(P)-binding domain (InterPro:IPR016040)%3B BEST Arabidopsis thaliana protein match is: AXR1-like (TAIR:AT2G32410.1)%3B Has 6539 Blast hits to 5902 proteins in 1375 species: Archae - 158%3B Bacteria - 2625%3B Metazoa - 1326%3B Fungi - 867%3B Plants - 442%3B Viruses - 0%3B Other Eukaryotes - 1121 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:10944157, PMID:10611386, PMID:10557232, PMID:10068632, PMID:10036773, PMID:9951732, PMID:9761792, PMID:9624055, PMID:9436980, PMID:9108374, PMID:9092625, PMID:8979397, PMID:7658471, PMID:7642574, PMID:7766890, PMID:7704045, PMID:8321287, PMID:8278539, PMID:1983791, PMID:11027706, PMID:10322542, PMID:11884684, PMID:11161055, PMID:11485992, PMID:11543173, PMID:12011355, PMID:12172031, PMID:12242367, PMID:12232124, PMID:12226665, PMID:12215511, PMID:12447533, PMID:12376653, PMID:12368504, PMID:12468727, PMID:12566587, PMID:12682009, PMID:12690101, PMID:12730136, PMID:12887580, PMID:12953103, PMID:14550541, PMID:14617065, PMID:14660546, PMID:15020435, PMID:15208392, PMID:15181201, PMID:15829603, PMID:16020787, PMID:16039901, PMID:16453133, PMID:16816406, PMID:16971475, PMID:17216481, PMID:17655650, PMID:18434413, PMID:18583350, PMID:18650403, PMID:18832358, PMID:19176721, PMID:16174328, PMID:19825556, PMID:20040541, PMID:20044451, PMID:20154098, PMID:20421456, PMID:20669021, PMID:20844890, PMID:20826955, PMID:21311953, PMID:21466556, PMID:21937677, PMID:22007024, PMID:22576848, PMID:22658222, PMID:22824128, PMID:23279608, PMID:23319550, PMID:23288076, PMID:11137012, PMID:24596172, PMID:25059707, PMID:25116939, locus:2207220; locus_type=protein_coding
AT1G05180.3	chr1:001498524	0.0	C/1498524-1498746,1498836-1498919,1499229-1499314,1499456-1499618,1499706-1499779,1499891-1499979,1500156-1500249,1500332-1500485,1500600-1500679,1500804-1500914,1501167-1501190,1501289-1501330,1501425-1501469	AT1G05180.3 CDS AT1G05180 ID=AT1G05180.3; Parent=AT1G05180; Name=AT1G05180.3; Note=NAD(P)-binding Rossmann-fold superfamily protein; curator_summary=Encodes a subunit of the RUB1 activating enzyme that regulates the protein degradation activity of Skp1-Cullin-Fbox complexes%2C primarily%2C but not exclusively%2C affecting auxin responses. Acts alongside AS1 to exclude BP expression from leaves.; conf_class=6; symbol=AXR1; full_name=AUXIN RESISTANT 1; computational_description=AUXIN RESISTANT 1 (AXR1)%3B CONTAINS InterPro DOMAIN/s: Molybdenum cofactor biosynthesis%2C MoeB (InterPro:IPR009036)%2C UBA/THIF-type NAD/FAD binding fold (InterPro:IPR000594)%2C NAD(P)-binding domain (InterPro:IPR016040)%3B BEST Arabidopsis thaliana protein match is: AXR1-like (TAIR:AT2G32410.1)%3B Has 6539 Blast hits to 5902 proteins in 1375 species: Archae - 158%3B Bacteria - 2625%3B Metazoa - 1326%3B Fungi - 867%3B Plants - 442%3B Viruses - 0%3B Other Eukaryotes - 1121 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:10944157, PMID:10611386, PMID:10557232, PMID:10068632, PMID:10036773, PMID:9951732, PMID:9761792, PMID:9624055, PMID:9436980, PMID:9108374, PMID:9092625, PMID:8979397, PMID:7658471, PMID:7642574, PMID:7766890, PMID:7704045, PMID:8321287, PMID:8278539, PMID:1983791, PMID:11027706, PMID:10322542, PMID:11884684, PMID:11161055, PMID:11485992, PMID:11543173, PMID:12011355, PMID:12172031, PMID:12242367, PMID:12232124, PMID:12226665, PMID:12215511, PMID:12447533, PMID:12376653, PMID:12368504, PMID:12468727, PMID:12566587, PMID:12682009, PMID:12690101, PMID:12730136, PMID:12887580, PMID:12953103, PMID:14550541, PMID:14617065, PMID:14660546, PMID:15020435, PMID:15208392, PMID:15181201, PMID:15829603, PMID:16020787, PMID:16039901, PMID:16453133, PMID:16816406, PMID:16971475, PMID:17216481, PMID:17655650, PMID:18434413, PMID:18583350, PMID:18650403, PMID:18832358, PMID:19176721, PMID:16174328, PMID:19825556, PMID:20040541, PMID:20044451, PMID:20154098, PMID:20421456, PMID:20669021, PMID:20844890, PMID:20826955, PMID:21311953, PMID:21466556, PMID:21937677, PMID:22007024, PMID:22576848, PMID:22658222, PMID:22824128, PMID:23279608, PMID:23319550, PMID:23288076, PMID:11137012, PMID:24596172, PMID:25059707, PMID:25116939, locus:2207220; locus_type=protein_coding
AT1TE04920	chr1:001501823	0.0	C/1501823-1502307	AT1TE04920 transposable_element AT1TE04920 ID=AT1TE04920; Name=AT1TE04920; Alias=BRODYAGA2
AT1G05190.1	chr1:001502515	0.0	C/1502515-1502851,1502962-1503261,1503704-1503738	AT1G05190.1 CDS AT1G05190 ID=AT1G05190.1; Parent=AT1G05190; Name=AT1G05190.1; Note=Ribosomal protein L6 family; conf_class=2; symbol=emb2394; full_name=embryo defective 2394; computational_description=embryo defective 2394 (emb2394)%3B FUNCTIONS IN: structural constituent of ribosome%2C rRNA binding%3B INVOLVED IN: translation%2C embryo development ending in seed dormancy%3B LOCATED IN: chloroplast stroma%2C chloroplast%2C large ribosomal subunit%2C membrane%2C chloroplast envelope%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L6 (InterPro:IPR000702)%2C Ribosomal protein L6%2C bacterial-type (InterPro:IPR019906)%2C Ribosomal protein L6%2C alpha-beta domain (InterPro:IPR020040)%2C Ribosomal protein L6%2C conserved site (InterPro:IPR002358)%3B BEST Arabidopsis thaliana protein match is: ribosomal protein L6 family protein (TAIR:AT2G18400.1)%3B Has 8498 Blast hits to 8498 proteins in 2848 species: Archae - 226%3B Bacteria - 5468%3B Metazoa - 15%3B Fungi - 189%3B Plants - 125%3B Viruses - 0%3B Other Eukaryotes - 2475 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:15703057, PMID:16368778, PMID:17562352, PMID:18650403, PMID:24064926, locus:2207190; locus_type=protein_coding
AT1G05200.1	chr1:001505642	0.0	W/1505642-1505993,1506117-1507450,1507529-1507806,1507886-1507917,1508024-1508433,1508529-1509002	AT1G05200.1 CDS AT1G05200 ID=AT1G05200.1; Parent=AT1G05200; Name=AT1G05200.1; Note=glutamate receptor 3.4; curator_summary=Encodes a putative glutamate receptor GLR3 with dual localization in plastid and plasma membrane.; conf_class=2; symbol=GLR3.4; Alias=ATGLR3.4, glutamate receptor 3.4, GLUR3; full_name=glutamate receptor 3.4; computational_description=glutamate receptor 3.4 (GLR3.4)%3B FUNCTIONS IN: protein binding%2C intracellular ligand-gated ion channel activity%3B INVOLVED IN: cellular calcium ion homeostasis%2C response to light stimulus%3B LOCATED IN: integral to membrane%2C membrane%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Extracellular solute-binding protein%2C family 3 (InterPro:IPR001638)%2C Ionotropic glutamate receptor (InterPro:IPR001320)%2C Extracellular ligand-binding receptor (InterPro:IPR001828)%2C Glutamate receptor-related (InterPro:IPR015683)%2C GPCR%2C family 3%2C gamma-aminobutyric acid receptor%2C type B (InterPro:IPR002455)%2C Ionotropic glutamate-like receptor%2C plant (InterPro:IPR017103)%3B BEST Arabidopsis thaliana protein match is: glutamate receptor 3.5 (TAIR:AT2G32390.2)%3B Has 6705 Blast hits to 6546 proteins in 599 species: Archae - 47%3B Bacteria - 1309%3B Metazoa - 4441%3B Fungi - 0%3B Plants - 637%3B Viruses - 0%3B Other Eukaryotes - 271 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11379626, PMID:12753585, PMID:14576160, PMID:15864638, PMID:16460505, PMID:18162597, PMID:18650403, PMID:20736450, PMID:21110940, PMID:22447719, PMID:23590882, PMID:23757024, locus:2207165; locus_type=protein_coding
AT1G05200.2	chr1:001505642	0.0	W/1505642-1505993,1506117-1507450,1507529-1507806,1507886-1507917,1508024-1508433,1508529-1509002	AT1G05200.2 CDS AT1G05200 ID=AT1G05200.2; Parent=AT1G05200; Name=AT1G05200.2; Note=glutamate receptor 3.4; curator_summary=Encodes a putative glutamate receptor GLR3 with dual localization in plastid and plasma membrane.; conf_class=2; symbol=GLR3.4; Alias=ATGLR3.4, glutamate receptor 3.4, GLUR3; full_name=glutamate receptor 3.4; computational_description=glutamate receptor 3.4 (GLR3.4)%3B FUNCTIONS IN: protein binding%2C intracellular ligand-gated ion channel activity%3B INVOLVED IN: cellular calcium ion homeostasis%2C response to light stimulus%3B LOCATED IN: integral to membrane%2C membrane%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Extracellular solute-binding protein%2C family 3 (InterPro:IPR001638)%2C Ionotropic glutamate receptor (InterPro:IPR001320)%2C Extracellular ligand-binding receptor (InterPro:IPR001828)%2C Glutamate receptor-related (InterPro:IPR015683)%2C GPCR%2C family 3%2C gamma-aminobutyric acid receptor%2C type B (InterPro:IPR002455)%2C Ionotropic glutamate-like receptor%2C plant (InterPro:IPR017103)%3B BEST Arabidopsis thaliana protein match is: glutamate receptor 3.5 (TAIR:AT2G32390.2)%3B Has 6705 Blast hits to 6546 proteins in 599 species: Archae - 47%3B Bacteria - 1309%3B Metazoa - 4441%3B Fungi - 0%3B Plants - 637%3B Viruses - 0%3B Other Eukaryotes - 271 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11379626, PMID:12753585, PMID:14576160, PMID:15864638, PMID:16460505, PMID:18162597, PMID:18650403, PMID:20736450, PMID:21110940, PMID:22447719, PMID:23590882, PMID:23757024, locus:2207165; locus_type=protein_coding
AT1G05200.3	chr1:001505642	0.0	W/1505642-1505993,1506117-1507450,1507529-1507806,1507886-1507917,1508024-1508514	AT1G05200.3 CDS AT1G05200 ID=AT1G05200.3; Parent=AT1G05200; Name=AT1G05200.3; Note=glutamate receptor 3.4; symbol=GLR3.4; Alias=ATGLR3.4, glutamate receptor 3.4, GLUR3; full_name=glutamate receptor 3.4; curator_summary=Encodes a putative glutamate receptor GLR3 with dual localization in plastid and plasma membrane.; computational_description=glutamate receptor 3.4 (GLR3.4)%3B FUNCTIONS IN: protein binding%2C intracellular ligand-gated ion channel activity%3B INVOLVED IN: cellular calcium ion homeostasis%2C response to light stimulus%3B LOCATED IN: integral to membrane%2C membrane%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Extracellular solute-binding protein%2C family 3 (InterPro:IPR001638)%2C Ionotropic glutamate receptor (InterPro:IPR001320)%2C Extracellular ligand-binding receptor (InterPro:IPR001828)%2C Glutamate receptor-related (InterPro:IPR015683)%2C GPCR%2C family 3%2C gamma-aminobutyric acid receptor%2C type B (InterPro:IPR002455)%2C Ionotropic glutamate-like receptor%2C plant (InterPro:IPR017103)%3B BEST Arabidopsis thaliana protein match is: glutamate receptor 3.5 (TAIR:AT2G32390.2)%3B Has 6705 Blast hits to 6546 proteins in 599 species: Archae - 47%3B Bacteria - 1309%3B Metazoa - 4441%3B Fungi - 0%3B Plants - 637%3B Viruses - 0%3B Other Eukaryotes - 271 (source: NCBI BLink).; Dbxref=PMID:11379626, PMID:12753585, PMID:14576160, PMID:15864638, PMID:16460505, PMID:18162597, PMID:18650403, PMID:20736450, PMID:21110940, PMID:22447719, PMID:23590882, PMID:23757024, locus:2207165; locus_type=protein_coding
AT1G05200.4	chr1:001505642	0.0	W/1505642-1505993,1506117-1507450,1507529-1507806,1507886-1507949	AT1G05200.4 CDS AT1G05200 ID=AT1G05200.4; Parent=AT1G05200; Name=AT1G05200.4; Note=glutamate receptor 3.4; symbol=GLR3.4; Alias=ATGLR3.4, glutamate receptor 3.4, GLUR3; full_name=glutamate receptor 3.4; curator_summary=Encodes a putative glutamate receptor GLR3 with dual localization in plastid and plasma membrane.; computational_description=glutamate receptor 3.4 (GLR3.4)%3B FUNCTIONS IN: protein binding%2C intracellular ligand-gated ion channel activity%3B INVOLVED IN: cellular calcium ion homeostasis%2C response to light stimulus%3B LOCATED IN: integral to membrane%2C membrane%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Extracellular solute-binding protein%2C family 3 (InterPro:IPR001638)%2C Ionotropic glutamate receptor (InterPro:IPR001320)%2C Extracellular ligand-binding receptor (InterPro:IPR001828)%2C Glutamate receptor-related (InterPro:IPR015683)%2C GPCR%2C family 3%2C gamma-aminobutyric acid receptor%2C type B (InterPro:IPR002455)%2C Ionotropic glutamate-like receptor%2C plant (InterPro:IPR017103)%3B BEST Arabidopsis thaliana protein match is: glutamate receptor 3.5 (TAIR:AT2G32390.2)%3B Has 6705 Blast hits to 6546 proteins in 599 species: Archae - 47%3B Bacteria - 1309%3B Metazoa - 4441%3B Fungi - 0%3B Plants - 637%3B Viruses - 0%3B Other Eukaryotes - 271 (source: NCBI BLink).; Dbxref=PMID:11379626, PMID:12753585, PMID:14576160, PMID:15864638, PMID:16460505, PMID:18162597, PMID:18650403, PMID:20736450, PMID:21110940, PMID:22447719, PMID:23590882, PMID:23757024, locus:2207165; locus_type=protein_coding
AT1G05200.5	chr1:001505642	0.0	W/1505642-1505993,1506117-1507450,1507529-1507852	AT1G05200.5 CDS AT1G05200 ID=AT1G05200.5; Parent=AT1G05200; Name=AT1G05200.5; Note=glutamate receptor 3.4; symbol=GLR3.4; Alias=ATGLR3.4, glutamate receptor 3.4, GLUR3; full_name=glutamate receptor 3.4; Dbxref=PMID:11379626, PMID:12753585, PMID:14576160, PMID:15864638, PMID:16460505, PMID:18162597, PMID:18650403, PMID:20736450, PMID:21110940, PMID:22447719, PMID:23590882, PMID:23757024, locus:2207165; curator_summary=Encodes a putative glutamate receptor GLR3 with dual localization in plastid and plasma membrane.; computational_description=glutamate receptor 3.4 (GLR3.4)%3B FUNCTIONS IN: protein binding%2C intracellular ligand-gated ion channel activity%3B INVOLVED IN: cellular calcium ion homeostasis%2C response to light stimulus%3B LOCATED IN: integral to membrane%2C membrane%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Extracellular solute-binding protein%2C family 3 (InterPro:IPR001638)%2C Ionotropic glutamate receptor (InterPro:IPR001320)%2C Extracellular ligand-binding receptor (InterPro:IPR001828)%2C Glutamate receptor-related (InterPro:IPR015683)%2C GPCR%2C family 3%2C gamma-aminobutyric acid receptor%2C type B (InterPro:IPR002455)%2C Ionotropic glutamate-like receptor%2C plant (InterPro:IPR017103)%3B BEST Arabidopsis thaliana protein match is: glutamate receptor 3.5 (TAIR:AT2G32390.2)%3B Has 6705 Blast hits to 6546 proteins in 599 species: Archae - 47%3B Bacteria - 1309%3B Metazoa - 4441%3B Fungi - 0%3B Plants - 637%3B Viruses - 0%3B Other Eukaryotes - 271 (source: NCBI BLink).; locus_type=protein_coding
AT1G05200.6	chr1:001505642	0.0	W/1505642-1505993,1506117-1507450,1507529-1507806,1507886-1507917,1508024-1508433,1508529-1509002	AT1G05200.6 CDS AT1G05200 ID=AT1G05200.6; Parent=AT1G05200; Name=AT1G05200.6; Note=glutamate receptor 3.4; symbol=GLR3.4; Alias=ATGLR3.4, glutamate receptor 3.4, GLUR3; full_name=glutamate receptor 3.4; Dbxref=PMID:11379626, PMID:12753585, PMID:14576160, PMID:15864638, PMID:16460505, PMID:18162597, PMID:18650403, PMID:20736450, PMID:21110940, PMID:22447719, PMID:23590882, PMID:23757024, locus:2207165; curator_summary=Encodes a putative glutamate receptor GLR3 with dual localization in plastid and plasma membrane.; computational_description=glutamate receptor 3.4 (GLR3.4)%3B FUNCTIONS IN: protein binding%2C intracellular ligand-gated ion channel activity%3B INVOLVED IN: cellular calcium ion homeostasis%2C response to light stimulus%3B LOCATED IN: integral to membrane%2C membrane%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Extracellular solute-binding protein%2C family 3 (InterPro:IPR001638)%2C Ionotropic glutamate receptor (InterPro:IPR001320)%2C Extracellular ligand-binding receptor (InterPro:IPR001828)%2C Glutamate receptor-related (InterPro:IPR015683)%2C GPCR%2C family 3%2C gamma-aminobutyric acid receptor%2C type B (InterPro:IPR002455)%2C Ionotropic glutamate-like receptor%2C plant (InterPro:IPR017103)%3B BEST Arabidopsis thaliana protein match is: glutamate receptor 3.5 (TAIR:AT2G32390.2)%3B Has 6705 Blast hits to 6546 proteins in 599 species: Archae - 47%3B Bacteria - 1309%3B Metazoa - 4441%3B Fungi - 0%3B Plants - 637%3B Viruses - 0%3B Other Eukaryotes - 271 (source: NCBI BLink).; locus_type=protein_coding
AT1G05200.7	chr1:001505642	0.0	W/1505642-1505993,1506117-1507450,1507529-1507806,1507886-1507917,1508024-1508514	AT1G05200.7 CDS AT1G05200 ID=AT1G05200.7; Parent=AT1G05200; Name=AT1G05200.7; Note=glutamate receptor 3.4; symbol=GLR3.4; Alias=ATGLR3.4, glutamate receptor 3.4, GLUR3; full_name=glutamate receptor 3.4; curator_summary=Encodes a putative glutamate receptor GLR3 with dual localization in plastid and plasma membrane.; computational_description=glutamate receptor 3.4 (GLR3.4)%3B FUNCTIONS IN: protein binding%2C intracellular ligand-gated ion channel activity%3B INVOLVED IN: cellular calcium ion homeostasis%2C response to light stimulus%3B LOCATED IN: integral to membrane%2C membrane%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Extracellular solute-binding protein%2C family 3 (InterPro:IPR001638)%2C Ionotropic glutamate receptor (InterPro:IPR001320)%2C Extracellular ligand-binding receptor (InterPro:IPR001828)%2C Glutamate receptor-related (InterPro:IPR015683)%2C GPCR%2C family 3%2C gamma-aminobutyric acid receptor%2C type B (InterPro:IPR002455)%2C Ionotropic glutamate-like receptor%2C plant (InterPro:IPR017103)%3B BEST Arabidopsis thaliana protein match is: glutamate receptor 3.5 (TAIR:AT2G32390.2)%3B Has 6705 Blast hits to 6546 proteins in 599 species: Archae - 47%3B Bacteria - 1309%3B Metazoa - 4441%3B Fungi - 0%3B Plants - 637%3B Viruses - 0%3B Other Eukaryotes - 271 (source: NCBI BLink).; Dbxref=PMID:11379626, PMID:12753585, PMID:14576160, PMID:15864638, PMID:16460505, PMID:18162597, PMID:18650403, PMID:20736450, PMID:21110940, PMID:22447719, PMID:23590882, PMID:23757024, locus:2207165; locus_type=protein_coding
AT1G04343.1	chr1:001508646	0.0	C/1508646-1509015	AT1G04343.1 antisense_lncRNA AT1G04343 ID=AT1G04343.1; Parent=AT1G04343; Name=AT1G04343.1; description=Natural antisense transcript overlaps with AT1G05200; Note=Natural antisense transcript overlaps with AT1G05200; locus_type=antisense_long_noncoding_rna
AT1G05205.1	chr1:001509352	0.0	C/1509352-1509436,1509692-1509771,1510139-1510249	AT1G05205.1 CDS AT1G05205 ID=AT1G05205.1; Parent=AT1G05205; Name=AT1G05205.1; Note=hexokinase-1 protein; conf_class=2; computational_description=unknown protein%3B Has 44 Blast hits to 44 proteins in 16 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 44%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15295017, PMID:18315867, PMID:18650403, locus:505006100; locus_type=protein_coding
AT1G04347.1	chr1:001509751	0.0	W/1509751-1510161	AT1G04347.1 antisense_lncRNA AT1G04347 ID=AT1G04347.1; Parent=AT1G04347; Name=AT1G04347.1; description=Natural antisense transcript overlaps with AT1G05205; Note=Natural antisense transcript overlaps with AT1G05205; locus_type=antisense_long_noncoding_rna
AT1G05210.1	chr1:001510469	0.0	W/1510469-1510792,1511303-1511485	AT1G05210.1 CDS AT1G05210 ID=AT1G05210.1; Parent=AT1G05210; Name=AT1G05210.1; Note=Transmembrane protein 97%2C Putative; conf_class=2; computational_description=Transmembrane protein 97%2C predicted%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Transmembrane protein 97%2C predicted (InterPro:IPR016964)%3B BEST Arabidopsis thaliana protein match is: Transmembrane protein 97%2C predicted (TAIR:AT2G32380.1)%3B Has 151 Blast hits to 151 proteins in 50 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 54%3B Fungi - 14%3B Plants - 77%3B Viruses - 0%3B Other Eukaryotes - 6 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2207150; locus_type=protein_coding
AT1G05220.1	chr1:001511943	0.0	W/1511943-1512263,1512495-1512656	AT1G05220.1 CDS AT1G05220 ID=AT1G05220.1; Parent=AT1G05220; Name=AT1G05220.1; Note=Transmembrane protein 97%2C Putative; conf_class=1; computational_description=Transmembrane protein 97%2C predicted%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: Transmembrane protein 97%2C predicted (InterPro:IPR016964)%3B BEST Arabidopsis thaliana protein match is: Transmembrane protein 97%2C predicted (TAIR:AT1G05210.1)%3B Has 151 Blast hits to 151 proteins in 52 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 55%3B Fungi - 15%3B Plants - 75%3B Viruses - 0%3B Other Eukaryotes - 6 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:20736450, locus:2207250; locus_type=protein_coding
AT1G04353.1	chr1:001512618	0.0	W/1512618-1514562	AT1G04353.1 antisense_lncRNA AT1G04353 ID=AT1G04353.1; Parent=AT1G04353; Name=AT1G04353.1; description=Natural antisense transcript overlaps with AT1G05230; Note=Natural antisense transcript overlaps with AT1G05230; locus_type=antisense_long_noncoding_rna
AT1G05230.10	chr1:001513388	0.0	C/1513388-1513744,1513825-1513920,1513994-1514265,1514350-1514524,1514590-1514790,1514862-1514963,1515038-1515451,1515821-1516009,1516587-1516704,1516783-1517024	AT1G05230.10 CDS AT1G05230 ID=AT1G05230.10; Parent=AT1G05230; Name=AT1G05230.10; Note=homeodomain GLABROUS 2; symbol=HDG2; full_name=homeodomain GLABROUS 2; Dbxref=PMID:11118137, PMID:15186492, PMID:16778018, PMID:16920880, PMID:17329565, PMID:18650403, PMID:20736450, PMID:23515473, PMID:23590515, locus:2207235; curator_summary=Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Mutants have trichomes that appear glass-like under a dissecting microscope as compared to the wild-type trichomes. The mutations do not affect trichome growth or branch number.; computational_description=homeodomain GLABROUS 2 (HDG2)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%2C trichome morphogenesis%3B LOCATED IN: nucleus%3B EXPRESSED IN: 32 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Homeobox%2C conserved site (InterPro:IPR017970)%2C Homeobox (InterPro:IPR001356)%2C Homeodomain-like (InterPro:IPR009057)%2C Lipid-binding START (InterPro:IPR002913)%2C Homeodomain-related (InterPro:IPR012287)%3B BEST Arabidopsis thaliana protein match is: protodermal factor 2 (TAIR:AT4G04890.1)%3B Has 8730 Blast hits to 8651 proteins in 460 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 6110%3B Fungi - 222%3B Plants - 2153%3B Viruses - 0%3B Other Eukaryotes - 245 (source: NCBI BLink).; locus_type=protein_coding
AT1G05230.11	chr1:001513388	0.0	C/1513388-1513744,1513825-1513920,1513994-1514265,1514350-1514524,1514590-1514790,1514862-1514963,1515038-1515451,1515821-1516009,1516587-1516704,1516783-1517024	AT1G05230.11 CDS AT1G05230 ID=AT1G05230.11; Parent=AT1G05230; Name=AT1G05230.11; Note=homeodomain GLABROUS 2; symbol=HDG2; full_name=homeodomain GLABROUS 2; Dbxref=PMID:11118137, PMID:15186492, PMID:16778018, PMID:16920880, PMID:17329565, PMID:18650403, PMID:20736450, PMID:23515473, PMID:23590515, locus:2207235; curator_summary=Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Mutants have trichomes that appear glass-like under a dissecting microscope as compared to the wild-type trichomes. The mutations do not affect trichome growth or branch number.; computational_description=homeodomain GLABROUS 2 (HDG2)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%2C trichome morphogenesis%3B LOCATED IN: nucleus%3B EXPRESSED IN: 32 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Homeobox%2C conserved site (InterPro:IPR017970)%2C Homeobox (InterPro:IPR001356)%2C Homeodomain-like (InterPro:IPR009057)%2C Lipid-binding START (InterPro:IPR002913)%2C Homeodomain-related (InterPro:IPR012287)%3B BEST Arabidopsis thaliana protein match is: protodermal factor 2 (TAIR:AT4G04890.1)%3B Has 8730 Blast hits to 8651 proteins in 460 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 6110%3B Fungi - 222%3B Plants - 2153%3B Viruses - 0%3B Other Eukaryotes - 245 (source: NCBI BLink).; locus_type=protein_coding
AT1G05230.1	chr1:001513388	0.0	C/1513388-1513744,1513825-1513920,1513994-1514265,1514350-1514524,1514590-1514790,1514862-1514963,1515038-1515451,1515821-1516009,1516587-1516704,1516783-1517024	AT1G05230.1 CDS AT1G05230 ID=AT1G05230.1; Parent=AT1G05230; Name=AT1G05230.1; Note=homeodomain GLABROUS 2; curator_summary=Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Mutants have trichomes that appear glass-like under a dissecting microscope as compared to the wild-type trichomes. The mutations do not affect trichome growth or branch number.; conf_class=2; symbol=HDG2; full_name=homeodomain GLABROUS 2; computational_description=homeodomain GLABROUS 2 (HDG2)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%2C trichome morphogenesis%3B LOCATED IN: nucleus%3B EXPRESSED IN: 32 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Homeobox%2C conserved site (InterPro:IPR017970)%2C Homeobox (InterPro:IPR001356)%2C Homeodomain-like (InterPro:IPR009057)%2C Lipid-binding START (InterPro:IPR002913)%2C Homeodomain-related (InterPro:IPR012287)%3B BEST Arabidopsis thaliana protein match is: protodermal factor 2 (TAIR:AT4G04890.1)%3B Has 8730 Blast hits to 8651 proteins in 460 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 6110%3B Fungi - 222%3B Plants - 2153%3B Viruses - 0%3B Other Eukaryotes - 245 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:15186492, PMID:16778018, PMID:16920880, PMID:17329565, PMID:18650403, PMID:20736450, PMID:23515473, PMID:23590515, locus:2207235; locus_type=protein_coding
AT1G05230.2	chr1:001513388	0.0	C/1513388-1513744,1513825-1513920,1513994-1514265,1514350-1514524,1514590-1514790,1514862-1514963,1515038-1515451,1515821-1516009,1516587-1516704,1516783-1517024	AT1G05230.2 CDS AT1G05230 ID=AT1G05230.2; Parent=AT1G05230; Name=AT1G05230.2; Note=homeodomain GLABROUS 2; curator_summary=Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Mutants have trichomes that appear glass-like under a dissecting microscope as compared to the wild-type trichomes. The mutations do not affect trichome growth or branch number.; conf_class=1; symbol=HDG2; full_name=homeodomain GLABROUS 2; computational_description=homeodomain GLABROUS 2 (HDG2)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%2C trichome morphogenesis%3B LOCATED IN: nucleus%3B EXPRESSED IN: 32 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Homeobox%2C conserved site (InterPro:IPR017970)%2C Homeobox (InterPro:IPR001356)%2C Homeodomain-like (InterPro:IPR009057)%2C Lipid-binding START (InterPro:IPR002913)%2C Homeodomain-related (InterPro:IPR012287)%3B BEST Arabidopsis thaliana protein match is: protodermal factor 2 (TAIR:AT4G04890.1)%3B Has 8730 Blast hits to 8651 proteins in 460 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 6110%3B Fungi - 222%3B Plants - 2153%3B Viruses - 0%3B Other Eukaryotes - 245 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11118137, PMID:15186492, PMID:16778018, PMID:16920880, PMID:17329565, PMID:18650403, PMID:20736450, PMID:23515473, PMID:23590515, locus:2207235; locus_type=protein_coding
AT1G05230.3	chr1:001513388	0.0	C/1513388-1513744,1513831-1513920,1513994-1514265,1514350-1514524,1514590-1514790,1514862-1514963,1515038-1515451,1515821-1516009,1516587-1516704,1516783-1517024	AT1G05230.3 CDS AT1G05230 ID=AT1G05230.3; Parent=AT1G05230; Name=AT1G05230.3; Note=homeodomain GLABROUS 2; curator_summary=Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Mutants have trichomes that appear glass-like under a dissecting microscope as compared to the wild-type trichomes. The mutations do not affect trichome growth or branch number.; conf_class=2; symbol=HDG2; full_name=homeodomain GLABROUS 2; computational_description=homeodomain GLABROUS 2 (HDG2)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%2C trichome morphogenesis%3B LOCATED IN: nucleus%3B EXPRESSED IN: 32 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Homeobox%2C conserved site (InterPro:IPR017970)%2C Homeobox (InterPro:IPR001356)%2C Homeodomain-like (InterPro:IPR009057)%2C Lipid-binding START (InterPro:IPR002913)%2C Homeodomain-related (InterPro:IPR012287)%3B BEST Arabidopsis thaliana protein match is: protodermal factor 2 (TAIR:AT4G04890.1)%3B Has 8730 Blast hits to 8651 proteins in 460 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 6110%3B Fungi - 222%3B Plants - 2153%3B Viruses - 0%3B Other Eukaryotes - 245 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:15186492, PMID:16778018, PMID:16920880, PMID:17329565, PMID:18650403, PMID:20736450, PMID:23515473, PMID:23590515, locus:2207235; locus_type=protein_coding
AT1G05230.4	chr1:001513388	0.0	C/1513388-1513744,1513825-1513920,1513994-1514265,1514350-1514524,1514590-1514790,1514862-1514963,1515038-1515451,1515821-1516009,1516587-1516704,1516783-1517024	AT1G05230.4 CDS AT1G05230 ID=AT1G05230.4; Parent=AT1G05230; Name=AT1G05230.4; Note=homeodomain GLABROUS 2; curator_summary=Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Mutants have trichomes that appear glass-like under a dissecting microscope as compared to the wild-type trichomes. The mutations do not affect trichome growth or branch number.; conf_class=6; symbol=HDG2; full_name=homeodomain GLABROUS 2; computational_description=homeodomain GLABROUS 2 (HDG2)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%2C trichome morphogenesis%3B LOCATED IN: nucleus%3B EXPRESSED IN: 32 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Homeobox%2C conserved site (InterPro:IPR017970)%2C Homeobox (InterPro:IPR001356)%2C Homeodomain-like (InterPro:IPR009057)%2C Lipid-binding START (InterPro:IPR002913)%2C Homeodomain-related (InterPro:IPR012287)%3B BEST Arabidopsis thaliana protein match is: protodermal factor 2 (TAIR:AT4G04890.1)%3B Has 8730 Blast hits to 8651 proteins in 460 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 6110%3B Fungi - 222%3B Plants - 2153%3B Viruses - 0%3B Other Eukaryotes - 245 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:11118137, PMID:15186492, PMID:16778018, PMID:16920880, PMID:17329565, PMID:18650403, PMID:20736450, PMID:23515473, PMID:23590515, locus:2207235; locus_type=protein_coding
AT1G05230.5	chr1:001513388	0.0	C/1513388-1513744,1513825-1513920,1513994-1514265,1514350-1514524,1514590-1514790,1514862-1514963,1515038-1515451,1515821-1516009,1516587-1516704,1516783-1517024	AT1G05230.5 CDS AT1G05230 ID=AT1G05230.5; Parent=AT1G05230; Name=AT1G05230.5; Note=homeodomain GLABROUS 2; symbol=HDG2; full_name=homeodomain GLABROUS 2; Dbxref=PMID:11118137, PMID:15186492, PMID:16778018, PMID:16920880, PMID:17329565, PMID:18650403, PMID:20736450, PMID:23515473, PMID:23590515, locus:2207235; curator_summary=Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Mutants have trichomes that appear glass-like under a dissecting microscope as compared to the wild-type trichomes. The mutations do not affect trichome growth or branch number.; computational_description=homeodomain GLABROUS 2 (HDG2)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%2C trichome morphogenesis%3B LOCATED IN: nucleus%3B EXPRESSED IN: 32 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Homeobox%2C conserved site (InterPro:IPR017970)%2C Homeobox (InterPro:IPR001356)%2C Homeodomain-like (InterPro:IPR009057)%2C Lipid-binding START (InterPro:IPR002913)%2C Homeodomain-related (InterPro:IPR012287)%3B BEST Arabidopsis thaliana protein match is: protodermal factor 2 (TAIR:AT4G04890.1)%3B Has 8730 Blast hits to 8651 proteins in 460 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 6110%3B Fungi - 222%3B Plants - 2153%3B Viruses - 0%3B Other Eukaryotes - 245 (source: NCBI BLink).; locus_type=protein_coding
AT1G05230.6	chr1:001513388	0.0	C/1513388-1513744,1513825-1513920,1513994-1514265,1514350-1514524,1514590-1514790,1514862-1514963,1515038-1515451,1515821-1516009,1516587-1516704,1516783-1517024	AT1G05230.6 CDS AT1G05230 ID=AT1G05230.6; Parent=AT1G05230; Name=AT1G05230.6; Note=homeodomain GLABROUS 2; symbol=HDG2; full_name=homeodomain GLABROUS 2; Dbxref=PMID:11118137, PMID:15186492, PMID:16778018, PMID:16920880, PMID:17329565, PMID:18650403, PMID:20736450, PMID:23515473, PMID:23590515, locus:2207235; curator_summary=Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Mutants have trichomes that appear glass-like under a dissecting microscope as compared to the wild-type trichomes. The mutations do not affect trichome growth or branch number.; computational_description=homeodomain GLABROUS 2 (HDG2)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%2C trichome morphogenesis%3B LOCATED IN: nucleus%3B EXPRESSED IN: 32 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Homeobox%2C conserved site (InterPro:IPR017970)%2C Homeobox (InterPro:IPR001356)%2C Homeodomain-like (InterPro:IPR009057)%2C Lipid-binding START (InterPro:IPR002913)%2C Homeodomain-related (InterPro:IPR012287)%3B BEST Arabidopsis thaliana protein match is: protodermal factor 2 (TAIR:AT4G04890.1)%3B Has 8730 Blast hits to 8651 proteins in 460 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 6110%3B Fungi - 222%3B Plants - 2153%3B Viruses - 0%3B Other Eukaryotes - 245 (source: NCBI BLink).; locus_type=protein_coding
AT1G05230.7	chr1:001513388	0.0	C/1513388-1513744,1513825-1513920,1513994-1514265,1514350-1514524,1514590-1514790,1514862-1514963,1515038-1515451,1515821-1516009,1516587-1516704,1516783-1517024	AT1G05230.7 CDS AT1G05230 ID=AT1G05230.7; Parent=AT1G05230; Name=AT1G05230.7; Note=homeodomain GLABROUS 2; symbol=HDG2; full_name=homeodomain GLABROUS 2; Dbxref=PMID:11118137, PMID:15186492, PMID:16778018, PMID:16920880, PMID:17329565, PMID:18650403, PMID:20736450, PMID:23515473, PMID:23590515, locus:2207235; curator_summary=Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Mutants have trichomes that appear glass-like under a dissecting microscope as compared to the wild-type trichomes. The mutations do not affect trichome growth or branch number.; computational_description=homeodomain GLABROUS 2 (HDG2)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%2C trichome morphogenesis%3B LOCATED IN: nucleus%3B EXPRESSED IN: 32 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Homeobox%2C conserved site (InterPro:IPR017970)%2C Homeobox (InterPro:IPR001356)%2C Homeodomain-like (InterPro:IPR009057)%2C Lipid-binding START (InterPro:IPR002913)%2C Homeodomain-related (InterPro:IPR012287)%3B BEST Arabidopsis thaliana protein match is: protodermal factor 2 (TAIR:AT4G04890.1)%3B Has 8730 Blast hits to 8651 proteins in 460 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 6110%3B Fungi - 222%3B Plants - 2153%3B Viruses - 0%3B Other Eukaryotes - 245 (source: NCBI BLink).; locus_type=protein_coding
AT1G05230.8	chr1:001513388	0.0	C/1513388-1513744,1513825-1513920,1513994-1514265,1514350-1514524,1514590-1514790,1514862-1514963,1515038-1515451,1515821-1516009,1516587-1516704,1516783-1517024	AT1G05230.8 CDS AT1G05230 ID=AT1G05230.8; Parent=AT1G05230; Name=AT1G05230.8; Note=homeodomain GLABROUS 2; symbol=HDG2; full_name=homeodomain GLABROUS 2; Dbxref=PMID:11118137, PMID:15186492, PMID:16778018, PMID:16920880, PMID:17329565, PMID:18650403, PMID:20736450, PMID:23515473, PMID:23590515, locus:2207235; curator_summary=Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Mutants have trichomes that appear glass-like under a dissecting microscope as compared to the wild-type trichomes. The mutations do not affect trichome growth or branch number.; computational_description=homeodomain GLABROUS 2 (HDG2)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%2C trichome morphogenesis%3B LOCATED IN: nucleus%3B EXPRESSED IN: 32 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Homeobox%2C conserved site (InterPro:IPR017970)%2C Homeobox (InterPro:IPR001356)%2C Homeodomain-like (InterPro:IPR009057)%2C Lipid-binding START (InterPro:IPR002913)%2C Homeodomain-related (InterPro:IPR012287)%3B BEST Arabidopsis thaliana protein match is: protodermal factor 2 (TAIR:AT4G04890.1)%3B Has 8730 Blast hits to 8651 proteins in 460 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 6110%3B Fungi - 222%3B Plants - 2153%3B Viruses - 0%3B Other Eukaryotes - 245 (source: NCBI BLink).; locus_type=protein_coding
AT1G05230.9	chr1:001513388	0.0	C/1513388-1513744,1513825-1513920,1513994-1514265,1514350-1514524,1514590-1514790,1514862-1514963,1515038-1515451,1515821-1516009,1516587-1516704,1516783-1517024	AT1G05230.9 CDS AT1G05230 ID=AT1G05230.9; Parent=AT1G05230; Name=AT1G05230.9; Note=homeodomain GLABROUS 2; symbol=HDG2; full_name=homeodomain GLABROUS 2; Dbxref=PMID:11118137, PMID:15186492, PMID:16778018, PMID:16920880, PMID:17329565, PMID:18650403, PMID:20736450, PMID:23515473, PMID:23590515, locus:2207235; curator_summary=Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Mutants have trichomes that appear glass-like under a dissecting microscope as compared to the wild-type trichomes. The mutations do not affect trichome growth or branch number.; computational_description=homeodomain GLABROUS 2 (HDG2)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%2C trichome morphogenesis%3B LOCATED IN: nucleus%3B EXPRESSED IN: 32 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Homeobox%2C conserved site (InterPro:IPR017970)%2C Homeobox (InterPro:IPR001356)%2C Homeodomain-like (InterPro:IPR009057)%2C Lipid-binding START (InterPro:IPR002913)%2C Homeodomain-related (InterPro:IPR012287)%3B BEST Arabidopsis thaliana protein match is: protodermal factor 2 (TAIR:AT4G04890.1)%3B Has 8730 Blast hits to 8651 proteins in 460 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 6110%3B Fungi - 222%3B Plants - 2153%3B Viruses - 0%3B Other Eukaryotes - 245 (source: NCBI BLink).; locus_type=protein_coding
AT1G05230.12	chr1:001513804	0.0	C/1513804-1513920,1513994-1514265,1514350-1514524,1514590-1514790,1514862-1514963,1515038-1515451,1515821-1516009,1516587-1516704,1516783-1517024	AT1G05230.12 CDS AT1G05230 ID=AT1G05230.12; Parent=AT1G05230; Name=AT1G05230.12; Note=homeodomain GLABROUS 2; symbol=HDG2; full_name=homeodomain GLABROUS 2; curator_summary=Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Mutants have trichomes that appear glass-like under a dissecting microscope as compared to the wild-type trichomes. The mutations do not affect trichome growth or branch number.; computational_description=homeodomain GLABROUS 2 (HDG2)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%2C trichome morphogenesis%3B LOCATED IN: nucleus%3B EXPRESSED IN: 32 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Homeobox%2C conserved site (InterPro:IPR017970)%2C Homeobox (InterPro:IPR001356)%2C Homeodomain-like (InterPro:IPR009057)%2C Lipid-binding START (InterPro:IPR002913)%2C Homeodomain-related (InterPro:IPR012287)%3B BEST Arabidopsis thaliana protein match is: protodermal factor 2 (TAIR:AT4G04890.1)%3B Has 8730 Blast hits to 8651 proteins in 460 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 6110%3B Fungi - 222%3B Plants - 2153%3B Viruses - 0%3B Other Eukaryotes - 245 (source: NCBI BLink).; Dbxref=PMID:11118137, PMID:15186492, PMID:16778018, PMID:16920880, PMID:17329565, PMID:18650403, PMID:20736450, PMID:23515473, PMID:23590515, locus:2207235; locus_type=protein_coding
AT1TE04970	chr1:001518865	0.0	W/1518865-1519729	AT1TE04970 transposable_element AT1TE04970 ID=AT1TE04970; Name=AT1TE04970; Alias=ATREP10B
AT1TE04975	chr1:001519730	0.0	W/1519730-1519773	AT1TE04975 transposable_element AT1TE04975 ID=AT1TE04975; Name=AT1TE04975; Alias=HELITRONY3
AT1TE04980	chr1:001519774	0.0	C/1519774-1520005	AT1TE04980 transposable_element AT1TE04980 ID=AT1TE04980; Name=AT1TE04980; Alias=ATREP3
AT1TE04985	chr1:001520195	0.0	C/1520195-1520367	AT1TE04985 transposable_element AT1TE04985 ID=AT1TE04985; Name=AT1TE04985; Alias=ATHILA
AT1G05240.1	chr1:001521202	0.0	W/1521202-1521414,1521504-1521689,1521783-1521948,1522035-1522447	AT1G05240.1 CDS AT1G05240 ID=AT1G05240.1; Parent=AT1G05240; Name=AT1G05240.1; Note=Peroxidase superfamily protein; conf_class=1; computational_description=Peroxidase superfamily protein%3B FUNCTIONS IN: peroxidase activity%2C heme binding%3B INVOLVED IN: response to oxidative stress%2C oxidation reduction%3B LOCATED IN: plant-type cell wall%3B CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255)%2C Plant peroxidase (InterPro:IPR000823)%2C Peroxidases heam-ligand binding site (InterPro:IPR019793)%2C Peroxidase%2C active site (InterPro:IPR019794)%2C Haem peroxidase%2C plant/fungal/bacterial (InterPro:IPR002016)%3B BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT1G05250.1)%3B Has 4227 Blast hits to 4200 proteins in 227 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 3%3B Fungi - 50%3B Plants - 4133%3B Viruses - 0%3B Other Eukaryotes - 37 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12473102, PMID:15272873, PMID:15231406, PMID:16258017, PMID:16287169, PMID:18684332, PMID:23180292, locus:2817952; locus_type=protein_coding
AT1TE04990	chr1:001522504	0.0	C/1522504-1522667	AT1TE04990 transposable_element AT1TE04990 ID=AT1TE04990; Name=AT1TE04990; Alias=ATHAT10
AT1TE04995	chr1:001522668	0.0	C/1522668-1522770	AT1TE04995 transposable_element AT1TE04995 ID=AT1TE04995; Name=AT1TE04995; Alias=ATHATN10
AT1TE05000	chr1:001522771	0.0	C/1522771-1522971	AT1TE05000 transposable_element AT1TE05000 ID=AT1TE05000; Name=AT1TE05000; Alias=ATHATN10
AT1G04357.1	chr1:001523561	0.0	C/1523561-1524069	AT1G04357.1 lnc_RNA AT1G04357 ID=AT1G04357.1; Parent=AT1G04357; Name=AT1G04357.1; locus_type=long_noncoding_rna
AT1G04363.1	chr1:001523594	0.0	W/1523594-1523943	AT1G04363.1 lnc_RNA AT1G04363 ID=AT1G04363.1; Parent=AT1G04363; Name=AT1G04363.1; locus_type=long_noncoding_rna
AT1G04367.1	chr1:001524572	0.0	C/1524572-1525242	AT1G04367.1 lnc_RNA AT1G04367 ID=AT1G04367.1; Parent=AT1G04367; Name=AT1G04367.1; locus_type=long_noncoding_rna
AT1G05250.1	chr1:001525924	0.0	C/1525924-1526336,1526423-1526588,1526682-1526867,1526957-1527169	AT1G05250.1 CDS AT1G05250 ID=AT1G05250.1; Parent=AT1G05250; Name=AT1G05250.1; Note=Peroxidase superfamily protein; curator_summary=Encodes a cationic cell-wall-bound peroxidase homolog that is involved in the lignification of cell walls.; conf_class=4; Alias=AtPRX1, PRX2, peroxidase 2; computational_description=Peroxidase superfamily protein%3B FUNCTIONS IN: peroxidase activity%2C heme binding%3B INVOLVED IN: response to oxidative stress%2C oxidation reduction%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255)%2C Plant peroxidase (InterPro:IPR000823)%2C Peroxidases heam-ligand binding site (InterPro:IPR019793)%2C Peroxidase%2C active site (InterPro:IPR019794)%2C Haem peroxidase%2C plant/fungal/bacterial (InterPro:IPR002016)%3B BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT1G05240.1)%3B Has 4227 Blast hits to 4200 proteins in 227 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 3%3B Fungi - 50%3B Plants - 4133%3B Viruses - 0%3B Other Eukaryotes - 37 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:12481097, PMID:12473102, PMID:15047898, PMID:15231406, PMID:15287975, PMID:15516340, PMID:15824099, PMID:16648215, PMID:17408486, PMID:18684332, PMID:18820081, PMID:23551275, PMID:25137070, locus:2207215; locus_type=protein_coding
AT1G05260.1	chr1:001529827	0.0	W/1529827-1530039,1530148-1530336,1530430-1530592,1530856-1531271	AT1G05260.1 CDS AT1G05260 ID=AT1G05260.1; Parent=AT1G05260; Name=AT1G05260.1; Note=Peroxidase superfamily protein; curator_summary=Encodes a cold-inducible cationic peroxidase that is involved in the stress response. In response to low temperature%2C RCI3 transcripts accumulate in the aerial part and in roots of etiolated seedlings but only in roots of light-grown seedlings.; conf_class=2; symbol=RCI3; Alias=RCI3A; full_name=RARE COLD INDUCIBLE GENE 3; computational_description=RARE COLD INDUCIBLE GENE 3 (RCI3)%3B FUNCTIONS IN: peroxidase activity%3B INVOLVED IN: response to desiccation%2C response to cold%2C hyperosmotic salinity response%3B LOCATED IN: endoplasmic reticulum%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: 4 anthesis%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%3B CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255)%2C Plant peroxidase (InterPro:IPR000823)%2C Peroxidases heam-ligand binding site (InterPro:IPR019793)%2C Peroxidase%2C active site (InterPro:IPR019794)%2C Haem peroxidase%2C plant/fungal/bacterial (InterPro:IPR002016)%3B BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT3G21770.1)%3B Has 4433 Blast hits to 4402 proteins in 259 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 3%3B Fungi - 76%3B Plants - 4304%3B Viruses - 0%3B Other Eukaryotes - 46 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12366797, PMID:12473102, PMID:12753585, PMID:15047898, PMID:15231406, PMID:16648215, PMID:16920880, PMID:18650403, PMID:18682547, PMID:20139158, PMID:22995285, locus:2207210; locus_type=protein_coding
AT1G05270.1	chr1:001531806	0.0	C/1531806-1531934,1532019-1532130,1532264-1532364,1532484-1532597,1532730-1532834,1532917-1533000,1533352-1533411,1533503-1533550,1533943-1534305	AT1G05270.1 CDS AT1G05270 ID=AT1G05270.1; Parent=AT1G05270; Name=AT1G05270.1; Note=TraB family protein; conf_class=2; computational_description=TraB family protein%3B CONTAINS InterPro DOMAIN/s: Pheromone shutdown-related%2C TraB (InterPro:IPR002816)%3B BEST Arabidopsis thaliana protein match is: TraB family protein (TAIR:AT2G32340.1)%3B Has 779 Blast hits to 750 proteins in 262 species: Archae - 153%3B Bacteria - 256%3B Metazoa - 121%3B Fungi - 0%3B Plants - 106%3B Viruses - 0%3B Other Eukaryotes - 143 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:21896887, locus:2207205; locus_type=protein_coding
AT1G05280.1	chr1:001535079	0.0	C/1535079-1535198,1535585-1535887,1535975-1536211,1536297-1536708,1537011-1537414	AT1G05280.1 CDS AT1G05280 ID=AT1G05280.1; Parent=AT1G05280; Name=AT1G05280.1; Note=ERV-F (C)1 provirus ancestral Env polyprotein%2C putative (DUF604); conf_class=6; computational_description=Protein of unknown function (DUF604)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF604 (InterPro:IPR006740)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF604) (TAIR:AT4G15240.1)%3B Has 523 Blast hits to 513 proteins in 78 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 61%3B Fungi - 172%3B Plants - 273%3B Viruses - 0%3B Other Eukaryotes - 17 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:20736450, locus:2207170; locus_type=protein_coding
AT1G05280.2	chr1:001535540	0.0	C/1535540-1535887,1535975-1536211,1536297-1536708,1537011-1537414	AT1G05280.2 CDS AT1G05280 ID=AT1G05280.2; Parent=AT1G05280; Name=AT1G05280.2; Note=ERV-F (C)1 provirus ancestral Env polyprotein%2C putative (DUF604); computational_description=Protein of unknown function (DUF604)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF604 (InterPro:IPR006740)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF604) (TAIR:AT4G15240.1)%3B Has 523 Blast hits to 513 proteins in 78 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 61%3B Fungi - 172%3B Plants - 273%3B Viruses - 0%3B Other Eukaryotes - 17 (source: NCBI BLink).; Dbxref=PMID:20736450, locus:2207170; locus_type=protein_coding
AT1G04373.1	chr1:001538273	0.0	C/1538273-1538484	AT1G04373.1 lnc_RNA AT1G04373 ID=AT1G04373.1; Parent=AT1G04373; Name=AT1G04373.1; locus_type=long_noncoding_rna
AT1G05290.1	chr1:001539152	0.0	C/1539152-1539296,1539384-1539694,1539782-1539970,1540082-1540546	AT1G05290.1 CDS AT1G05290 ID=AT1G05290.1; Parent=AT1G05290; Name=AT1G05290.1; Note=CCT motif family protein; conf_class=2; computational_description=CCT motif family protein%3B CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402)%3B BEST Arabidopsis thaliana protein match is: B-box type zinc finger protein with CCT domain (TAIR:AT3G21880.1)%3B Has 1471 Blast hits to 1456 proteins in 101 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1426%3B Viruses - 0%3B Other Eukaryotes - 43 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:20736450, locus:2207155; locus_type=protein_coding
AT1G05291.1	chr1:001541348	0.0	C/1541348-1541627,1541912-1542114,1542192-1542323	AT1G05291.1 CDS AT1G05291 ID=AT1G05291.1; Parent=AT1G05291; Name=AT1G05291.1; Note=GPI inositol-deacylase C%2C putative (DUF1218); conf_class=4; computational_description=Protein of unknown function (DUF1218)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1218) (TAIR:AT2G32280.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=***; Dbxref=locus:4515102499; locus_type=protein_coding
AT1G04377.1	chr1:001542969	0.0	C/1542969-1543287	AT1G04377.1 lnc_RNA AT1G04377 ID=AT1G04377.1; Parent=AT1G04377; Name=AT1G04377.1; locus_type=long_noncoding_rna
AT1G04383.1	chr1:001543157	0.0	W/1543157-1543394	AT1G04383.1 lnc_RNA AT1G04383 ID=AT1G04383.1; Parent=AT1G04383; Name=AT1G04383.1; locus_type=long_noncoding_rna
AT1G04387.1	chr1:001543643	0.0	W/1543643-1544093	AT1G04387.1 lnc_RNA AT1G04387 ID=AT1G04387.1; Parent=AT1G04387; Name=AT1G04387.1; locus_type=long_noncoding_rna
AT1G05300.1	chr1:001545258	0.0	C/1545258-1545563,1546188-1546337,1547083-1547709	AT1G05300.1 CDS AT1G05300 ID=AT1G05300.1; Parent=AT1G05300; Name=AT1G05300.1; Note=zinc transporter 5 precursor; curator_summary=member of Fe(II) transporter isolog family; conf_class=2; symbol=ZIP5; full_name=zinc transporter 5 precursor; computational_description=zinc transporter 5 precursor (ZIP5)%3B FUNCTIONS IN: cation transmembrane transporter activity%2C metal ion transmembrane transporter activity%3B INVOLVED IN: response to zinc ion%2C cation transport%3B LOCATED IN: endomembrane system%2C integral to membrane%2C membrane%3B EXPRESSED IN: 10 plant structures%3B EXPRESSED DURING: LP.06 six leaves visible%2C LP.04 four leaves visible%2C 4 anthesis%2C C globular stage%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Zinc/iron permease%2C fungal/plant (InterPro:IPR004698)%2C Zinc/iron permease (InterPro:IPR003689)%3B BEST Arabidopsis thaliana protein match is: zinc transporter 3 precursor (TAIR:AT2G32270.1)%3B Has 1970 Blast hits to 1847 proteins in 292 species: Archae - 0%3B Bacteria - 139%3B Metazoa - 489%3B Fungi - 625%3B Plants - 507%3B Viruses - 0%3B Other Eukaryotes - 210 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11500563, PMID:13129917, PMID:14690510, PMID:14756312, PMID:15181204, PMID:15546358, PMID:16608451, PMID:16684236, PMID:16998091, PMID:19014467, PMID:18631293, PMID:19054361, PMID:20736450, locus:2207140; locus_type=protein_coding
AT1G05300.2	chr1:001546161	0.0	C/1546161-1546337,1547083-1547709	AT1G05300.2 CDS AT1G05300 ID=AT1G05300.2; Parent=AT1G05300; Name=AT1G05300.2; Note=zinc transporter 5 precursor; curator_summary=member of Fe(II) transporter isolog family; conf_class=1; symbol=ZIP5; full_name=zinc transporter 5 precursor; computational_description=zinc transporter 5 precursor (ZIP5)%3B FUNCTIONS IN: cation transmembrane transporter activity%2C metal ion transmembrane transporter activity%3B INVOLVED IN: response to zinc ion%2C cation transport%3B LOCATED IN: endomembrane system%2C integral to membrane%2C membrane%3B EXPRESSED IN: 10 plant structures%3B EXPRESSED DURING: LP.06 six leaves visible%2C LP.04 four leaves visible%2C 4 anthesis%2C C globular stage%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Zinc/iron permease%2C fungal/plant (InterPro:IPR004698)%2C Zinc/iron permease (InterPro:IPR003689)%3B BEST Arabidopsis thaliana protein match is: zinc transporter 3 precursor (TAIR:AT2G32270.1)%3B Has 1970 Blast hits to 1847 proteins in 292 species: Archae - 0%3B Bacteria - 139%3B Metazoa - 489%3B Fungi - 625%3B Plants - 507%3B Viruses - 0%3B Other Eukaryotes - 210 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11500563, PMID:13129917, PMID:14690510, PMID:14756312, PMID:15181204, PMID:15546358, PMID:16608451, PMID:16684236, PMID:16998091, PMID:19014467, PMID:18631293, PMID:19054361, PMID:20736450, locus:2207140; locus_type=protein_coding
AT1G05310.1	chr1:001550615	0.0	C/1550615-1550771,1550861-1551120,1551212-1551418,1551799-1551970,1552049-1552434	AT1G05310.1 CDS AT1G05310 ID=AT1G05310.1; Parent=AT1G05310; Name=AT1G05310.1; Note=Pectin lyase-like superfamily protein; conf_class=2; computational_description=Pectin lyase-like superfamily protein%3B FUNCTIONS IN: pectinesterase activity%3B INVOLVED IN: cell wall modification%3B LOCATED IN: endomembrane system%2C cell wall%2C plant-type cell wall%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Pectinesterase%2C active site (InterPro:IPR018040)%2C Pectin lyase fold/virulence factor (InterPro:IPR011050)%2C Pectinesterase%2C catalytic (InterPro:IPR000070)%3B BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT2G36710.1)%3B Has 4576 Blast hits to 3466 proteins in 439 species: Archae - 11%3B Bacteria - 724%3B Metazoa - 994%3B Fungi - 355%3B Plants - 1773%3B Viruses - 6%3B Other Eukaryotes - 713 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14585825, PMID:16622707, locus:2207245; locus_type=protein_coding
AT1G05320.1	chr1:001554856	0.0	W/1554856-1554900,1554991-1556586,1556658-1556867,1556945-1557079,1557176-1557328,1557425-1557658	AT1G05320.1 CDS AT1G05320 ID=AT1G05320.1; Parent=AT1G05320; Name=AT1G05320.1; Note=myosin heavy chain%2C embryonic smooth protein; conf_class=2; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: fruit%2C egg cell%3B CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053)%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32240.1)%3B Has 267650 Blast hits to 119772 proteins in 3899 species: Archae - 3706%3B Bacteria - 62589%3B Metazoa - 106546%3B Fungi - 19914%3B Plants - 13918%3B Viruses - 1287%3B Other Eukaryotes - 59690 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15546358, PMID:20226671, locus:2207230; locus_type=protein_coding
AT1G05320.2	chr1:001554856	0.0	W/1554856-1554900,1554991-1556586,1556658-1556867,1556945-1557079,1557176-1557328,1557425-1557658	AT1G05320.2 CDS AT1G05320 ID=AT1G05320.2; Parent=AT1G05320; Name=AT1G05320.2; Note=myosin heavy chain%2C embryonic smooth protein; conf_class=2; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: fruit%2C egg cell%3B CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053)%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32240.1)%3B Has 267650 Blast hits to 119772 proteins in 3899 species: Archae - 3706%3B Bacteria - 62589%3B Metazoa - 106546%3B Fungi - 19914%3B Plants - 13918%3B Viruses - 1287%3B Other Eukaryotes - 59690 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15546358, PMID:20226671, locus:2207230; locus_type=protein_coding
AT1G05320.3	chr1:001554856	0.0	W/1554856-1554900,1554991-1556586,1556658-1556867,1556945-1557079,1557176-1557328,1557425-1557658	AT1G05320.3 CDS AT1G05320 ID=AT1G05320.3; Parent=AT1G05320; Name=AT1G05320.3; Note=myosin heavy chain%2C embryonic smooth protein; conf_class=3; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: fruit%2C egg cell%3B CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053)%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32240.1)%3B Has 267650 Blast hits to 119772 proteins in 3899 species: Archae - 3706%3B Bacteria - 62589%3B Metazoa - 106546%3B Fungi - 19914%3B Plants - 13918%3B Viruses - 1287%3B Other Eukaryotes - 59690 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15546358, PMID:20226671, locus:2207230; locus_type=protein_coding
AT1G05320.4	chr1:001554856	0.0	W/1554856-1554900,1554991-1556586,1556658-1556867,1556945-1557079,1557176-1557328,1557425-1557658	AT1G05320.4 CDS AT1G05320 ID=AT1G05320.4; Parent=AT1G05320; Name=AT1G05320.4; Note=myosin heavy chain%2C embryonic smooth protein; Dbxref=PMID:15546358, PMID:20226671, locus:2207230; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: fruit%2C egg cell%3B CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053)%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32240.1)%3B Has 267650 Blast hits to 119772 proteins in 3899 species: Archae - 3706%3B Bacteria - 62589%3B Metazoa - 106546%3B Fungi - 19914%3B Plants - 13918%3B Viruses - 1287%3B Other Eukaryotes - 59690 (source: NCBI BLink).; locus_type=protein_coding
AT1G05320.5	chr1:001554856	0.0	W/1554856-1554900,1554991-1556586,1556658-1556867,1556945-1557109	AT1G05320.5 CDS AT1G05320 ID=AT1G05320.5; Parent=AT1G05320; Name=AT1G05320.5; Note=myosin heavy chain%2C embryonic smooth protein; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: fruit%2C egg cell%3B CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053)%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32240.1)%3B Has 267650 Blast hits to 119772 proteins in 3899 species: Archae - 3706%3B Bacteria - 62589%3B Metazoa - 106546%3B Fungi - 19914%3B Plants - 13918%3B Viruses - 1287%3B Other Eukaryotes - 59690 (source: NCBI BLink).; Dbxref=PMID:15546358, PMID:20226671, locus:2207230; locus_type=protein_coding
AT1G05320.6	chr1:001554856	0.0	W/1554856-1554900,1554991-1556586,1556658-1556867,1556945-1557109	AT1G05320.6 CDS AT1G05320 ID=AT1G05320.6; Parent=AT1G05320; Name=AT1G05320.6; Note=myosin heavy chain%2C embryonic smooth protein; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: fruit%2C egg cell%3B CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053)%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32240.1)%3B Has 267650 Blast hits to 119772 proteins in 3899 species: Archae - 3706%3B Bacteria - 62589%3B Metazoa - 106546%3B Fungi - 19914%3B Plants - 13918%3B Viruses - 1287%3B Other Eukaryotes - 59690 (source: NCBI BLink).; Dbxref=PMID:15546358, PMID:20226671, locus:2207230; locus_type=protein_coding
AT1G05320.7	chr1:001554856	0.0	W/1554856-1554900,1554991-1556586,1556658-1556867,1556945-1557079,1557176-1557328,1557425-1557658	AT1G05320.7 CDS AT1G05320 ID=AT1G05320.7; Parent=AT1G05320; Name=AT1G05320.7; Note=myosin heavy chain%2C embryonic smooth protein; Dbxref=PMID:15546358, PMID:20226671, locus:2207230; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: fruit%2C egg cell%3B CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053)%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32240.1)%3B Has 267650 Blast hits to 119772 proteins in 3899 species: Archae - 3706%3B Bacteria - 62589%3B Metazoa - 106546%3B Fungi - 19914%3B Plants - 13918%3B Viruses - 1287%3B Other Eukaryotes - 59690 (source: NCBI BLink).; locus_type=protein_coding
AT1G05320.8	chr1:001554856	0.0	W/1554856-1554900,1554991-1556586,1556658-1556867,1556945-1557079,1557176-1557328,1557425-1557658	AT1G05320.8 CDS AT1G05320 ID=AT1G05320.8; Parent=AT1G05320; Name=AT1G05320.8; Note=myosin heavy chain%2C embryonic smooth protein; Dbxref=PMID:15546358, PMID:20226671, locus:2207230; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: fruit%2C egg cell%3B CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053)%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32240.1)%3B Has 267650 Blast hits to 119772 proteins in 3899 species: Archae - 3706%3B Bacteria - 62589%3B Metazoa - 106546%3B Fungi - 19914%3B Plants - 13918%3B Viruses - 1287%3B Other Eukaryotes - 59690 (source: NCBI BLink).; locus_type=protein_coding
AT1G05320.9	chr1:001554856	0.0	W/1554856-1554900,1554991-1556586,1556658-1556867,1556945-1557079,1557176-1557328,1557425-1557658	AT1G05320.9 CDS AT1G05320 ID=AT1G05320.9; Parent=AT1G05320; Name=AT1G05320.9; Note=myosin heavy chain%2C embryonic smooth protein; Dbxref=PMID:15546358, PMID:20226671, locus:2207230; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: fruit%2C egg cell%3B CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053)%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32240.1)%3B Has 267650 Blast hits to 119772 proteins in 3899 species: Archae - 3706%3B Bacteria - 62589%3B Metazoa - 106546%3B Fungi - 19914%3B Plants - 13918%3B Viruses - 1287%3B Other Eukaryotes - 59690 (source: NCBI BLink).; locus_type=protein_coding
AT1G05330.1	chr1:001558170	0.0	W/1558170-1558583	AT1G05330.1 CDS AT1G05330 ID=AT1G05330.1; Parent=AT1G05330; Name=AT1G05330.1; Note=hypothetical protein; conf_class=8; computational_description=unknown protein%3B Has 6 Blast hits to 6 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 6%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*; Dbxref=locus:2207200; locus_type=protein_coding
AT1G05340.1	chr1:001559079	0.0	C/1559079-1559124,1559376-1559517,1559616-1559646	AT1G05340.1 CDS AT1G05340 ID=AT1G05340.1; Parent=AT1G05340; Name=AT1G05340.1; Note=cysteine-rich TM module stress tolerance protein; conf_class=2; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 14 plant structures%3B EXPRESSED DURING: 7 growth stages%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32210.1)%3B Has 189 Blast hits to 189 proteins in 27 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 21%3B Plants - 168%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12481097, PMID:12805622, PMID:14576160, PMID:14617064, PMID:14614626, PMID:14966217, PMID:15144383, PMID:15200641, PMID:15448178, PMID:15634198, PMID:16307366, PMID:16603662, PMID:18424626, PMID:18650403, PMID:20736450, PMID:21443605, locus:2207195; locus_type=protein_coding
AT1G05350.1	chr1:001560891	0.0	C/1560891-1561039,1561143-1561195,1561313-1561431,1561537-1561623,1561744-1561818,1561953-1562027,1562205-1562287,1562369-1562405,1562578-1562733,1563012-1563080,1563165-1563293,1563390-1563503,1563582-1563650,1563925-1564005	AT1G05350.1 CDS AT1G05350 ID=AT1G05350.1; Parent=AT1G05350; Name=AT1G05350.1; Note=NAD(P)-binding Rossmann-fold superfamily protein; conf_class=3; computational_description=NAD(P)-binding Rossmann-fold superfamily protein%3B FUNCTIONS IN: binding%2C oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor%2C catalytic activity%2C cofactor binding%3B INVOLVED IN: metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD-binding (InterPro:IPR006140)%2C UBA/THIF-type NAD/FAD binding fold (InterPro:IPR000594)%2C Molybdenum cofactor biosynthesis%2C MoeB (InterPro:IPR009036)%2C NAD(P)-binding domain (InterPro:IPR016040)%3B BEST Arabidopsis thaliana protein match is: SUMO-activating enzyme 2 (TAIR:AT2G21470.1)%3B Has 12729 Blast hits to 12531 proteins in 2437 species: Archae - 211%3B Bacteria - 8204%3B Metazoa - 1010%3B Fungi - 713%3B Plants - 367%3B Viruses - 0%3B Other Eukaryotes - 2224 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12169696, PMID:15531708, PMID:18775970, locus:2207185; locus_type=protein_coding
AT1G05360.1	chr1:001564816	0.0	W/1564816-1564861,1565152-1565363,1565622-1565700,1565818-1566105,1566342-1566490,1566612-1566728,1566826-1567005,1567099-1567278	AT1G05360.1 CDS AT1G05360 ID=AT1G05360.1; Parent=AT1G05360; Name=AT1G05360.1; Note=vacuole membrane-like protein; curator_summary=KMS2 encode a endoplasmic reticulum protein involved in the early secretory pathway.; conf_class=2; symbol=KMS2; full_name=Killing Me Slowly 2; computational_description=BEST Arabidopsis thaliana protein match is: SNARE associated Golgi protein family (TAIR:AT4G14950.1)%3B Has 332 Blast hits to 326 proteins in 115 species: Archae - 0%3B Bacteria - 11%3B Metazoa - 174%3B Fungi - 0%3B Plants - 74%3B Viruses - 0%3B Other Eukaryotes - 73 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, PMID:21294794, locus:2207180; locus_type=protein_coding
AT1G05360.2	chr1:001565580	0.0	W/1565580-1565700,1565818-1566105,1566342-1566490,1566612-1566728,1566826-1567005,1567099-1567278	AT1G05360.2 CDS AT1G05360 ID=AT1G05360.2; Parent=AT1G05360; Name=AT1G05360.2; Note=vacuole membrane-like protein; symbol=KMS2; full_name=Killing Me Slowly 2; curator_summary=KMS2 encode a endoplasmic reticulum protein involved in the early secretory pathway.; computational_description=BEST Arabidopsis thaliana protein match is: SNARE associated Golgi protein family (TAIR:AT4G14950.1)%3B Has 332 Blast hits to 326 proteins in 115 species: Archae - 0%3B Bacteria - 11%3B Metazoa - 174%3B Fungi - 0%3B Plants - 74%3B Viruses - 0%3B Other Eukaryotes - 73 (source: NCBI BLink).; Dbxref=PMID:18775970, PMID:21294794, locus:2207180; locus_type=protein_coding
AT1G05360.3	chr1:001565580	0.0	W/1565580-1565700,1565818-1566105,1566342-1566490,1566612-1566728,1566826-1567005,1567099-1567278	AT1G05360.3 CDS AT1G05360 ID=AT1G05360.3; Parent=AT1G05360; Name=AT1G05360.3; Note=vacuole membrane-like protein; symbol=KMS2; full_name=Killing Me Slowly 2; curator_summary=KMS2 encode a endoplasmic reticulum protein involved in the early secretory pathway.; computational_description=BEST Arabidopsis thaliana protein match is: SNARE associated Golgi protein family (TAIR:AT4G14950.1)%3B Has 332 Blast hits to 326 proteins in 115 species: Archae - 0%3B Bacteria - 11%3B Metazoa - 174%3B Fungi - 0%3B Plants - 74%3B Viruses - 0%3B Other Eukaryotes - 73 (source: NCBI BLink).; Dbxref=PMID:18775970, PMID:21294794, locus:2207180; locus_type=protein_coding
AT1G05370.1	chr1:001569418	0.0	C/1569418-1570086,1570246-1570379,1570988-1571076,1571158-1571204,1571296-1571384,1571949-1572066,1572173-1572280	AT1G05370.1 CDS AT1G05370 ID=AT1G05370.1; Parent=AT1G05370; Name=AT1G05370.1; Note=Sec14p-like phosphatidylinositol transfer family protein; conf_class=2; computational_description=Sec14p-like phosphatidylinositol transfer family protein%3B CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function%2C C-terminal (InterPro:IPR001251)%2C Phosphatidylinositol transfer protein-like%2C N-terminal (InterPro:IPR011074)%3B BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT3G22410.1)%3B Has 487 Blast hits to 487 proteins in 112 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 20%3B Fungi - 189%3B Plants - 251%3B Viruses - 0%3B Other Eukaryotes - 27 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2201061; locus_type=protein_coding
AT1TE05170	chr1:001573302	0.0	W/1573302-1573550	AT1TE05170 transposable_element AT1TE05170 ID=AT1TE05170; Name=AT1TE05170; Alias=HELITRONY1A
AT1G05380.1	chr1:001577231	0.0	W/1577231-1579195,1579314-1579440,1579534-1579619,1580030-1580268,1580625-1580711,1581184-1581283,1581378-1582190	AT1G05380.1 CDS AT1G05380 ID=AT1G05380.1; Parent=AT1G05380; Name=AT1G05380.1; Note=Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein; conf_class=2; computational_description=Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C PHD-type (InterPro:IPR001965)%2C Zinc finger%2C FYVE/PHD-type (InterPro:IPR011011)%2C Acyl-CoA N-acyltransferase (InterPro:IPR016181)%2C Zinc finger%2C PHD-finger (InterPro:IPR019787)%3B BEST Arabidopsis thaliana protein match is: Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (TAIR:AT4G14920.1)%3B Has 4682 Blast hits to 3960 proteins in 222 species: Archae - 3%3B Bacteria - 7%3B Metazoa - 2969%3B Fungi - 456%3B Plants - 787%3B Viruses - 0%3B Other Eukaryotes - 460 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:9836641, PMID:16359384, PMID:18775970, locus:2201021; locus_type=protein_coding
AT1G05380.2	chr1:001577231	0.0	W/1577231-1579195,1579314-1579440,1579534-1579619,1580030-1580268,1580625-1580711,1581184-1581283,1581378-1582190	AT1G05380.2 CDS AT1G05380 ID=AT1G05380.2; Parent=AT1G05380; Name=AT1G05380.2; Note=Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein; conf_class=3; computational_description=Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C PHD-type (InterPro:IPR001965)%2C Zinc finger%2C FYVE/PHD-type (InterPro:IPR011011)%2C Acyl-CoA N-acyltransferase (InterPro:IPR016181)%2C Zinc finger%2C PHD-finger (InterPro:IPR019787)%3B BEST Arabidopsis thaliana protein match is: Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (TAIR:AT4G14920.1)%3B Has 4682 Blast hits to 3960 proteins in 222 species: Archae - 3%3B Bacteria - 7%3B Metazoa - 2969%3B Fungi - 456%3B Plants - 787%3B Viruses - 0%3B Other Eukaryotes - 460 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:9836641, PMID:16359384, PMID:18775970, locus:2201021; locus_type=protein_coding
AT1G05380.3	chr1:001577231	0.0	W/1577231-1579195,1579314-1579440,1579534-1579619,1580030-1580268,1580625-1580711,1581184-1581283,1581378-1582190	AT1G05380.3 CDS AT1G05380 ID=AT1G05380.3; Parent=AT1G05380; Name=AT1G05380.3; Note=Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein; Dbxref=PMID:14576160, PMID:9836641, PMID:16359384, PMID:18775970, locus:2201021; computational_description=Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C PHD-type (InterPro:IPR001965)%2C Zinc finger%2C FYVE/PHD-type (InterPro:IPR011011)%2C Acyl-CoA N-acyltransferase (InterPro:IPR016181)%2C Zinc finger%2C PHD-finger (InterPro:IPR019787)%3B BEST Arabidopsis thaliana protein match is: Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (TAIR:AT4G14920.1)%3B Has 4682 Blast hits to 3960 proteins in 222 species: Archae - 3%3B Bacteria - 7%3B Metazoa - 2969%3B Fungi - 456%3B Plants - 787%3B Viruses - 0%3B Other Eukaryotes - 460 (source: NCBI BLink).; locus_type=protein_coding
AT1G05385.1	chr1:001582747	0.0	C/1582747-1582884,1582965-1583347,1583570-1583648	AT1G05385.1 CDS AT1G05385 ID=AT1G05385.1; Parent=AT1G05385; Name=AT1G05385.1; Note=photosystem II 11 kDa protein-like protein; curator_summary=Encodes a Psb27 homolog involved in photosystem II biogenesis.; conf_class=2; symbol=LPA19; Alias=Psb27-H1; full_name=LOW PSII ACCUMULATION 19; computational_description=LOW PSII ACCUMULATION 19 (LPA19)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: photosystem II assembly%3B LOCATED IN: chloroplast thylakoid lumen%2C chloroplast%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B Has 214 Blast hits to 214 proteins in 55 species: Archae - 0%3B Bacteria - 73%3B Metazoa - 0%3B Fungi - 0%3B Plants - 72%3B Viruses - 0%3B Other Eukaryotes - 69 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:15659098, PMID:18431481, PMID:18650403, PMID:18775970, PMID:20444695, locus:505006101; locus_type=protein_coding
AT1G05385.2	chr1:001582747	0.0	C/1582747-1582884,1582965-1583264	AT1G05385.2 CDS AT1G05385 ID=AT1G05385.2; Parent=AT1G05385; Name=AT1G05385.2; Note=photosystem II 11 kDa protein-like protein; symbol=LPA19; Alias=Psb27-H1; full_name=LOW PSII ACCUMULATION 19; curator_summary=Encodes a Psb27 homolog involved in photosystem II biogenesis.; computational_description=LOW PSII ACCUMULATION 19 (LPA19)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: photosystem II assembly%3B LOCATED IN: chloroplast thylakoid lumen%2C chloroplast%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B Has 214 Blast hits to 214 proteins in 55 species: Archae - 0%3B Bacteria - 73%3B Metazoa - 0%3B Fungi - 0%3B Plants - 72%3B Viruses - 0%3B Other Eukaryotes - 69 (source: NCBI BLink).; Dbxref=PMID:14576160, PMID:15659098, PMID:18431481, PMID:18650403, PMID:18775970, PMID:20444695, locus:505006101; locus_type=protein_coding
AT1G05390.1	chr1:001583772	0.0	C/1583772-1583845	AT1G05390.1 tRNA AT1G05390 ID=AT1G05390.1; Parent=AT1G05390; Note=tRNA-Asn; computational_description=tRNA-Asn (anticodon: GTT); Dbxref=PMID:8980477, PMID:23066098, PMID:8980477, locus:3692725; Name=AT1G05390.1; locus_type=pre_trna
AT1G05400.1	chr1:001584746	0.0	W/1584746-1585060,1585161-1585244	AT1G05400.1 CDS AT1G05400 ID=AT1G05400.1; Parent=AT1G05400; Name=AT1G05400.1; Note=hypothetical protein; conf_class=2; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06810.1)%3B Has 31 Blast hits to 31 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 31%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17028338, locus:2201001; locus_type=protein_coding
AT1G05400.2	chr1:001584746	0.0	W/1584746-1585060,1585161-1585244	AT1G05400.2 CDS AT1G05400 ID=AT1G05400.2; Parent=AT1G05400; Name=AT1G05400.2; Note=hypothetical protein; conf_class=2; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06810.1)%3B Has 31 Blast hits to 31 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 31%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17028338, locus:2201001; locus_type=protein_coding
AT1G05410.1	chr1:001585504	0.0	C/1585504-1585931,1586030-1586090,1586158-1586723,1586908-1587268	AT1G05410.1 CDS AT1G05410 ID=AT1G05410.1; Parent=AT1G05410; Name=AT1G05410.1; Note=CDPK adapter%2C putative (DUF1423); conf_class=2; computational_description=Protein of unknown function (DUF1423)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1423%2C plant (InterPro:IPR004082)%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14840.1)%3B Has 192 Blast hits to 189 proteins in 31 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2%3B Fungi - 10%3B Plants - 173%3B Viruses - 0%3B Other Eukaryotes - 7 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16773372, locus:2201056; locus_type=protein_coding
AT1G05410.2	chr1:001585504	0.0	C/1585504-1585931,1586030-1586090,1586158-1586723,1586908-1587124,1587206-1587268	AT1G05410.2 CDS AT1G05410 ID=AT1G05410.2; Parent=AT1G05410; Name=AT1G05410.2; Note=CDPK adapter%2C putative (DUF1423); conf_class=3; computational_description=Protein of unknown function (DUF1423)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1423%2C plant (InterPro:IPR004082)%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14840.1)%3B Has 192 Blast hits to 189 proteins in 31 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2%3B Fungi - 10%3B Plants - 173%3B Viruses - 0%3B Other Eukaryotes - 7 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16773372, locus:2201056; locus_type=protein_coding
AT1TE05220	chr1:001589343	0.0	W/1589343-1589856	AT1TE05220 transposable_element AT1TE05220 ID=AT1TE05220; Name=AT1TE05220; Alias=ATREP11
AT1G05420.2	chr1:001590025	0.0	W/1590025-1590753	AT1G05420.2 CDS AT1G05420 ID=AT1G05420.2; Parent=AT1G05420; Name=AT1G05420.2; Note=ovate family protein 12; symbol=OFP12; Alias=ATOFP12, ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 12; full_name=ovate family protein 12; computational_description=ovate family protein 12 (OFP12)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF623 (InterPro:IPR006458)%3B BEST Arabidopsis thaliana protein match is: ovate family protein 16 (TAIR:AT2G32100.1)%3B Has 358 Blast hits to 358 proteins in 17 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 358%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=PMID:11826309, PMID:14576160, PMID:15781858, PMID:16258011, PMID:21886836, locus:2201011; locus_type=protein_coding
AT1G05420.1	chr1:001590073	0.0	W/1590073-1590753	AT1G05420.1 CDS AT1G05420 ID=AT1G05420.1; Parent=AT1G05420; Name=AT1G05420.1; Note=ovate family protein 12; conf_class=1; symbol=OFP12; Alias=ATOFP12, ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 12; full_name=ovate family protein 12; computational_description=ovate family protein 12 (OFP12)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF623 (InterPro:IPR006458)%3B BEST Arabidopsis thaliana protein match is: ovate family protein 16 (TAIR:AT2G32100.1)%3B Has 358 Blast hits to 358 proteins in 17 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 358%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11826309, PMID:14576160, PMID:15781858, PMID:16258011, PMID:21886836, locus:2201011; locus_type=protein_coding
AT1TE05225	chr1:001592656	0.0	W/1592656-1593745	AT1TE05225 transposable_element AT1TE05225 ID=AT1TE05225; Name=AT1TE05225; Alias=HELITRONY3
AT1G05430.1	chr1:001594227	0.0	C/1594227-1594430,1594540-1594807,1594923-1595043,1595133-1595186,1595321-1595426,1595675-1595731	AT1G05430.1 CDS AT1G05430 ID=AT1G05430.1; Parent=AT1G05430; Name=AT1G05430.1; Note=hypothetical protein; conf_class=2; computational_description=unknown protein%3B Has 31 Blast hits to 31 proteins in 9 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 31%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12805622, PMID:18650403, locus:2201076; locus_type=protein_coding
AT1G05440.1	chr1:001596374	0.0	C/1596374-1596667,1596903-1597052,1597133-1597870	AT1G05440.1 CDS AT1G05440 ID=AT1G05440.1; Parent=AT1G05440; Name=AT1G05440.1; Note=C-8 sterol isomerase; conf_class=1; computational_description=C-8 sterol isomerases%3B FUNCTIONS IN: C-8 sterol isomerase activity%3B INVOLVED IN: ergosterol biosynthetic process%3B LOCATED IN: endoplasmic reticulum%3B EXPRESSED IN: 14 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: ERG2/sigma1 receptor-like (InterPro:IPR006716)%3B Has 118 Blast hits to 118 proteins in 39 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 73%3B Fungi - 4%3B Plants - 21%3B Viruses - 1%3B Other Eukaryotes - 19 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:20736450, locus:2201086; locus_type=protein_coding
AT1G05450.2	chr1:001600004	0.0	W/1600004-1600334,1600507-1600533,1600642-1600701,1600809-1600862,1600941-1601086	AT1G05450.2 CDS AT1G05450 ID=AT1G05450.2; Parent=AT1G05450; Name=AT1G05450.2; Note=Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; curator_summary=Encodes a Protease inhibitor/seed storage/LTP family protein; conf_class=2; computational_description=Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein%3B Has 3 Blast hits to 3 proteins in 1 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 3%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12068095, PMID:12805588, PMID:14576160, PMID:14682612, PMID:15894741, PMID:17028338, locus:2201046; locus_type=protein_coding
AT1G05450.1	chr1:001600860	0.0	W/1600860-1600862,1600941-1601090	AT1G05450.1 CDS AT1G05450 ID=AT1G05450.1; Parent=AT1G05450; Name=AT1G05450.1; Note=Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; curator_summary=Encodes a Protease inhibitor/seed storage/LTP family protein; conf_class=1; computational_description=Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein%3B Has 3 Blast hits to 3 proteins in 1 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 3%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12068095, PMID:12805588, PMID:14576160, PMID:14682612, PMID:15894741, PMID:17028338, locus:2201046; locus_type=protein_coding
AT1G05460.1	chr1:001601357	0.0	C/1601357-1601962,1602053-1603507,1603623-1603787,1603876-1604658	AT1G05460.1 CDS AT1G05460 ID=AT1G05460.1; Parent=AT1G05460; Name=AT1G05460.1; Note=P-loop containing nucleoside triphosphate hydrolases superfamily protein; curator_summary=Encodes a protein with similarity to RNA helicases. Mutants are defective in post-transcriptional gene silencing.; conf_class=1; symbol=SDE3; full_name=SILENCING DEFECTIVE; computational_description=SILENCING DEFECTIVE (SDE3)%3B FUNCTIONS IN: RNA helicase activity%3B INVOLVED IN: virus induced gene silencing%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 19 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: Restriction endonuclease%2C type I%2C R subunit/Type III%2C Res subunit (InterPro:IPR006935)%2C DNA helicase%2C UvrD/REP type (InterPro:IPR000212)%3B BEST Arabidopsis thaliana protein match is: RNA helicase%2C putative (TAIR:AT5G47010.1)%3B Has 8827 Blast hits to 7137 proteins in 1206 species: Archae - 219%3B Bacteria - 2402%3B Metazoa - 1784%3B Fungi - 1431%3B Plants - 666%3B Viruses - 219%3B Other Eukaryotes - 2106 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11296239, PMID:11495769, PMID:15908605, PMID:16684236, PMID:17551672, PMID:20338883, PMID:20798330, PMID:22102828, PMID:22940249, PMID:23313553, locus:2200996; locus_type=protein_coding
AT1G05460.2	chr1:001601357	0.0	C/1601357-1601522,1601763-1601962,1602053-1603507,1603623-1603787,1603876-1604658	AT1G05460.2 CDS AT1G05460 ID=AT1G05460.2; Parent=AT1G05460; Name=AT1G05460.2; Note=P-loop containing nucleoside triphosphate hydrolases superfamily protein; symbol=SDE3; full_name=SILENCING DEFECTIVE; curator_summary=Encodes a protein with similarity to RNA helicases. Mutants are defective in post-transcriptional gene silencing.; computational_description=SILENCING DEFECTIVE (SDE3)%3B FUNCTIONS IN: RNA helicase activity%3B INVOLVED IN: virus induced gene silencing%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 19 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: Restriction endonuclease%2C type I%2C R subunit/Type III%2C Res subunit (InterPro:IPR006935)%2C DNA helicase%2C UvrD/REP type (InterPro:IPR000212)%3B BEST Arabidopsis thaliana protein match is: RNA helicase%2C putative (TAIR:AT5G47010.1)%3B Has 8827 Blast hits to 7137 proteins in 1206 species: Archae - 219%3B Bacteria - 2402%3B Metazoa - 1784%3B Fungi - 1431%3B Plants - 666%3B Viruses - 219%3B Other Eukaryotes - 2106 (source: NCBI BLink).; Dbxref=PMID:11296239, PMID:11495769, PMID:15908605, PMID:16684236, PMID:17551672, PMID:20338883, PMID:20798330, PMID:22102828, PMID:22940249, PMID:23313553, locus:2200996; locus_type=protein_coding
AT1G05470.1	chr1:001608558	0.0	C/1608558-1608780,1608868-1609016,1609099-1609207,1609316-1609509,1609602-1610397,1610486-1610590,1610674-1610761,1610854-1610925,1611074-1611161,1611262-1611291	AT1G05470.1 CDS AT1G05470 ID=AT1G05470.1; Parent=AT1G05470; Name=AT1G05470.1; Note=DNAse I-like superfamily protein; curator_summary=Encodes an inositol polyphosphate 5' phosphatase (5PTase) that is required for the proper recruitment of cells into developing vascular tissue in leaves and cotyledons. It is most similar to Type I 5PTases that are known to cleave a phosphate from IP3 or IP4. cvp2 mutants have elevated levels of IP3 and are hypersensitive to ABA in seed germination assays.; conf_class=3; symbol=CVP2; full_name=COTYLEDON VASCULAR PATTERN 2; computational_description=COTYLEDON VASCULAR PATTERN 2 (CVP2)%3B FUNCTIONS IN: hydrolase activity%2C inositol trisphosphate phosphatase activity%3B INVOLVED IN: in 8 processes%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Inositol polyphosphate related phosphatase (InterPro:IPR000300)%2C Endonuclease/exonuclease/phosphatase (InterPro:IPR005135)%3B BEST Arabidopsis thaliana protein match is: CVP2 like 1 (TAIR:AT2G32010.2)%3B Has 2640 Blast hits to 2079 proteins in 233 species: Archae - 0%3B Bacteria - 28%3B Metazoa - 855%3B Fungi - 611%3B Plants - 735%3B Viruses - 0%3B Other Eukaryotes - 411 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10559439, PMID:12169696, PMID:15100402, PMID:15539468, PMID:16684236, PMID:16943276, PMID:17237190, PMID:18931139, PMID:19473324, PMID:19363154, PMID:20044451, locus:2201016; locus_type=protein_coding
AT1G05470.2	chr1:001608558	0.0	C/1608558-1608780,1608868-1609016,1609099-1609207,1609316-1609509,1609602-1610397,1610486-1610590,1610674-1610761,1610854-1610925,1611074-1611161,1611262-1611291	AT1G05470.2 CDS AT1G05470 ID=AT1G05470.2; Parent=AT1G05470; Name=AT1G05470.2; Note=DNAse I-like superfamily protein; symbol=CVP2; full_name=COTYLEDON VASCULAR PATTERN 2; Dbxref=PMID:10559439, PMID:12169696, PMID:15100402, PMID:15539468, PMID:16684236, PMID:16943276, PMID:17237190, PMID:18931139, PMID:19473324, PMID:19363154, PMID:20044451, locus:2201016; curator_summary=Encodes an inositol polyphosphate 5' phosphatase (5PTase) that is required for the proper recruitment of cells into developing vascular tissue in leaves and cotyledons. It is most similar to Type I 5PTases that are known to cleave a phosphate from IP3 or IP4. cvp2 mutants have elevated levels of IP3 and are hypersensitive to ABA in seed germination assays.; computational_description=COTYLEDON VASCULAR PATTERN 2 (CVP2)%3B FUNCTIONS IN: hydrolase activity%2C inositol trisphosphate phosphatase activity%3B INVOLVED IN: in 8 processes%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Inositol polyphosphate related phosphatase (InterPro:IPR000300)%2C Endonuclease/exonuclease/phosphatase (InterPro:IPR005135)%3B BEST Arabidopsis thaliana protein match is: CVP2 like 1 (TAIR:AT2G32010.2)%3B Has 2640 Blast hits to 2079 proteins in 233 species: Archae - 0%3B Bacteria - 28%3B Metazoa - 855%3B Fungi - 611%3B Plants - 735%3B Viruses - 0%3B Other Eukaryotes - 411 (source: NCBI BLink).; locus_type=protein_coding
AT1TE05280	chr1:001613272	0.0	C/1613272-1614662	AT1TE05280 transposable_element AT1TE05280 ID=AT1TE05280; Name=AT1TE05280; Alias=ATREP16
AT1G05490.1	chr1:001618795	0.0	C/1618795-1620729,1620817-1620966,1621048-1623195	AT1G05490.1 CDS AT1G05490 ID=AT1G05490.1; Parent=AT1G05490; Name=AT1G05490.1; Note=chromatin remodeling 31; conf_class=1; symbol=chr31; full_name=chromatin remodeling 31; computational_description=chromatin remodeling 31 (chr31)%3B FUNCTIONS IN: helicase activity%2C DNA binding%2C ATP binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B EXPRESSED IN: 13 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: DEAD-like helicase%2C N-terminal (InterPro:IPR014001)%2C DNA/RNA helicase%2C C-terminal (InterPro:IPR001650)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain (InterPro:IPR014021)%2C SNF2-related (InterPro:IPR000330)%3B BEST Arabidopsis thaliana protein match is: chromatin remodeling 40 (TAIR:AT3G24340.1)%3B Has 38115 Blast hits to 26256 proteins in 2107 species: Archae - 207%3B Bacteria - 10267%3B Metazoa - 11226%3B Fungi - 5719%3B Plants - 1929%3B Viruses - 244%3B Other Eukaryotes - 8523 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16489130, PMID:16547115, PMID:18650403, locus:2201006; locus_type=protein_coding
AT1G05500.1	chr1:001625098	0.0	W/1625098-1625202,1625285-1625389,1625527-1625577,1625698-1625818,1626231-1626352,1626510-1626611,1626842-1626916,1627329-1627408,1627604-1627754,1627828-1628058,1628160-1628438,1628529-1628642,1628794-1628940	AT1G05500.1 CDS AT1G05500 ID=AT1G05500.1; Parent=AT1G05500; Name=AT1G05500.1; Note=Calcium-dependent lipid-binding (CaLB domain) family protein; curator_summary=Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells.; conf_class=2; symbol=NTMC2T2.1; computational_description=NTMC2T2.1%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%2C plasma membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029)%2C C2 calcium/lipid-binding domain%2C CaLB (InterPro:IPR008973)%2C C2 region (InterPro:IPR020477)%2C C2 calcium-dependent membrane targeting (InterPro:IPR000008)%3B BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT5G11100.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11543631, PMID:15295017, PMID:18775970, PMID:20498364, locus:2201036; locus_type=protein_coding
AT1G05500.2	chr1:001626281	0.0	W/1626281-1626352,1626510-1626611,1626842-1626916,1627329-1627408,1627604-1627754,1627828-1628058,1628160-1628438,1628529-1628642,1628794-1628940	AT1G05500.2 CDS AT1G05500 ID=AT1G05500.2; Parent=AT1G05500; Name=AT1G05500.2; Note=Calcium-dependent lipid-binding (CaLB domain) family protein; symbol=NTMC2T2.1; curator_summary=Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells.; computational_description=NTMC2T2.1%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%2C plasma membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029)%2C C2 calcium/lipid-binding domain%2C CaLB (InterPro:IPR008973)%2C C2 region (InterPro:IPR020477)%2C C2 calcium-dependent membrane targeting (InterPro:IPR000008)%3B BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT5G11100.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=PMID:11543631, PMID:15295017, PMID:18775970, PMID:20498364, locus:2201036; locus_type=protein_coding
AT1G05510.1	chr1:001629527	0.0	W/1629527-1629672,1630016-1630419,1630515-1630690	AT1G05510.1 CDS AT1G05510 ID=AT1G05510.1; Parent=AT1G05510; Name=AT1G05510.1; Note=naphthalene 1%2C2-dioxygenase subunit alpha (DUF1264); curator_summary=Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.; conf_class=1; Alias=OBAP1a, Oil Body-Associated Protein 1a; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: response to abscisic acid stimulus%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: seed%3B EXPRESSED DURING: seedling growth%2C seed development stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1264 (InterPro:IPR010686)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1264) (TAIR:AT2G31985.1)%3B Has 295 Blast hits to 295 proteins in 126 species: Archae - 0%3B Bacteria - 124%3B Metazoa - 0%3B Fungi - 67%3B Plants - 102%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15908592, PMID:16679420, PMID:18539592, PMID:18768909, PMID:20118269, PMID:24406791, locus:2201041; locus_type=protein_coding
AT1G05520.1	chr1:001631126	0.0	C/1631126-1631272,1631390-1631494,1631579-1631842,1631916-1632077,1632344-1632421,1632972-1633053,1633132-1633304,1633400-1633475,1633619-1633761,1633934-1634095,1634604-1634777,1634918-1635703	AT1G05520.1 CDS AT1G05520 ID=AT1G05520.1; Parent=AT1G05520; Name=AT1G05520.1; Note=Sec23/Sec24 protein transport family protein; conf_class=1; computational_description=Sec23/Sec24 protein transport family protein%3B FUNCTIONS IN: transporter activity%2C zinc ion binding%3B INVOLVED IN: response to salt stress%2C transport%3B LOCATED IN: COPII vesicle coat%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Sec23/Sec24%2C helical domain (InterPro:IPR006900)%2C Sec23/Sec24 beta-sandwich (InterPro:IPR012990)%2C Sec23/Sec24%2C trunk domain (InterPro:IPR006896)%2C Zinc finger%2C Sec23/Sec24-type (InterPro:IPR006895)%2C Gelsolin domain (InterPro:IPR007123)%3B BEST Arabidopsis thaliana protein match is: Sec23/Sec24 protein transport family protein (TAIR:AT3G23660.1)%3B Has 1391 Blast hits to 1379 proteins in 245 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 486%3B Fungi - 398%3B Plants - 318%3B Viruses - 0%3B Other Eukaryotes - 189 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11351099, PMID:12169696, PMID:15236667, PMID:18650403, PMID:24587212, locus:2201051; locus_type=protein_coding
AT1G05530.1	chr1:001636496	0.0	C/1636496-1637863	AT1G05530.1 CDS AT1G05530 ID=AT1G05530.1; Parent=AT1G05530; Name=AT1G05530.1; Note=UDP-glucosyl transferase 75B2; curator_summary=Encodes a protein with glucosyltransferase activity with high sequence homology to UGT1 (AT1G05560). It belongs to an UGT subfamily that binds UDP-glucose but not UDP-glucuronate%2C UDP-galactose%2C or UDP-rhamnose as the glycosyl donor. UGT2 was shown to be able to use abscisic acid as glycosylation substrate in the presence of UDP-glucose.; conf_class=1; symbol=UGT75B2; Alias=UGT2, UDP-GLUCOSYL TRANSFERASE 2; full_name=UDP-glucosyl transferase 75B2; computational_description=UDP-glucosyl transferase 75B2 (UGT75B2)%3B FUNCTIONS IN: UDP-glycosyltransferase activity%2C UDP-glucosyltransferase activity%2C transferase activity%2C transferring glycosyl groups%2C abscisic acid glucosyltransferase activity%3B INVOLVED IN: metabolic process%3B EXPRESSED IN: sperm cell%2C root%3B CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213)%3B BEST Arabidopsis thaliana protein match is: UDP-glucosyltransferase 75B1 (TAIR:AT1G05560.1)%3B Has 7198 Blast hits to 7135 proteins in 463 species: Archae - 0%3B Bacteria - 427%3B Metazoa - 1573%3B Fungi - 32%3B Plants - 5007%3B Viruses - 111%3B Other Eukaryotes - 48 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11641410, PMID:11283335, PMID:14576160, PMID:15539473, PMID:20736450, locus:2201066; locus_type=protein_coding
AT1G05540.1	chr1:001639348	0.0	W/1639348-1639401,1639587-1640314,1640386-1640707	AT1G05540.1 CDS AT1G05540 ID=AT1G05540.1; Parent=AT1G05540; Name=AT1G05540.1; Note=hypothetical protein (DUF295); conf_class=2; computational_description=Protein of unknown function (DUF295)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT1G30160.2)%3B Has 218 Blast hits to 208 proteins in 3 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 218%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:20736450, locus:2201071; locus_type=protein_coding
AT1G05540.2	chr1:001639348	0.0	W/1639348-1639401,1639587-1640318	AT1G05540.2 CDS AT1G05540 ID=AT1G05540.2; Parent=AT1G05540; Name=AT1G05540.2; Note=hypothetical protein (DUF295); computational_description=Protein of unknown function (DUF295)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT1G30160.2)%3B Has 218 Blast hits to 208 proteins in 3 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 218%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=PMID:20736450, locus:2201071; locus_type=protein_coding
AT1G05550.3	chr1:001641229	0.0	C/1641229-1641559,1641650-1641791,1641875-1642373,1643141-1643174,1643469-1643510,1643639-1643748	AT1G05550.3 CDS AT1G05550 ID=AT1G05550.3; Parent=AT1G05550; Name=AT1G05550.3; Note=hypothetical protein (DUF295); conf_class=6; computational_description=Protein of unknown function (DUF295)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT1G05540.1)%3B Has 175 Blast hits to 175 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 175%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:18426585, PMID:18650403, PMID:20736450, locus:2201081; locus_type=protein_coding
AT1G05550.1	chr1:001641717	0.0	C/1641717-1642373,1642586-1642639	AT1G05550.1 CDS AT1G05550 ID=AT1G05550.1; Parent=AT1G05550; Name=AT1G05550.1; Note=hypothetical protein (DUF295); conf_class=2; computational_description=Protein of unknown function (DUF295)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT1G05540.1)%3B Has 175 Blast hits to 175 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 175%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18426585, PMID:18650403, PMID:20736450, locus:2201081; locus_type=protein_coding
AT1G05550.2	chr1:001641717	0.0	C/1641717-1642373,1642582-1642593	AT1G05550.2 CDS AT1G05550 ID=AT1G05550.2; Parent=AT1G05550; Name=AT1G05550.2; Note=hypothetical protein (DUF295); conf_class=2; computational_description=Protein of unknown function (DUF295)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT1G05540.1)%3B Has 175 Blast hits to 175 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 175%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18426585, PMID:18650403, PMID:20736450, locus:2201081; locus_type=protein_coding
AT1G05550.4	chr1:001641717	0.0	C/1641717-1642373,1642586-1642639	AT1G05550.4 CDS AT1G05550 ID=AT1G05550.4; Parent=AT1G05550; Name=AT1G05550.4; Note=hypothetical protein (DUF295); Dbxref=PMID:18426585, PMID:18650403, PMID:20736450, locus:2201081; computational_description=Protein of unknown function (DUF295)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT1G05540.1)%3B Has 175 Blast hits to 175 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 175%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; locus_type=protein_coding
AT1G05562.1	chr1:001645300	0.0	W/1645300-1647435	AT1G05562.1 antisense_lncRNA AT1G05562 ID=AT1G05562.1; Parent=AT1G05562; curator_summary=Potential natural antisense gene%2C locus overlaps with AT1G05560; Dbxref=locus:6530298130; Name=AT1G05562.1; description=Natural antisense transcript overlaps with AT1G05560; Note=Natural antisense transcript overlaps with AT1G05560; locus_type=antisense_long_noncoding_rna
AT1G05560.1	chr1:001645674	0.0	C/1645674-1647083	AT1G05560.1 CDS AT1G05560 ID=AT1G05560.1; Parent=AT1G05560; Name=AT1G05560.1; Note=UDP-glucosyltransferase 75B1; curator_summary=A UDP-glucose transferase localized in the phragmoplast. It has been co-purified with the callose synthase complex and may transfer UDP-glucose from sucrose synthase to the callose synthase and thus help form a substrate channel for the synthesis of callose at the forming cell plate. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid. UGT1 encodes a protein with glucosyltransferase activity with high sequence homology to UGT2 (AT1G05530). It belongs to an UGT subfamily that binds UDP-glucose but not UDP-glucuronate%2C UDP-galactose%2C or UDP-rhamnose as the glycosyl donor. UGT1 was shown to be able to use abscisic acid as glycosylation substrate in the presence of UDP-glucose. UGT1/UGT75B1 catalyzes the formation of the p-aminobenzoate-glucose ester in vitro and in vivo. It appears to be the enzyme predominantly responsible for pABA-Glc formation in Arabidopsis based on assays in leaves%2C flowers%2C and siliques.; conf_class=1; symbol=UGT75B1; Alias=UGT1, UDP-GLUCOSE TRANSFERASE 1; full_name=UDP-glucosyltransferase 75B1; computational_description=UDP-glucosyltransferase 75B1 (UGT75B1)%3B CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213)%3B BEST Arabidopsis thaliana protein match is: UDP-glucosyl transferase 75B2 (TAIR:AT1G05530.1)%3B Has 7961 Blast hits to 7890 proteins in 509 species: Archae - 0%3B Bacteria - 579%3B Metazoa - 2125%3B Fungi - 39%3B Plants - 5043%3B Viruses - 112%3B Other Eukaryotes - 63 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11042207, PMID:11641410, PMID:11283335, PMID:12721858, PMID:15082927, PMID:15319476, PMID:15824099, PMID:16307367, PMID:17304219, PMID:17369372, PMID:18252844, PMID:18334669, PMID:18385129, PMID:18539778, PMID:18702669, PMID:18775970, PMID:20687615, locus:2201031; locus_type=protein_coding
AT1G05560.2	chr1:001645674	0.0	C/1645674-1647233	AT1G05560.2 CDS AT1G05560 ID=AT1G05560.2; Parent=AT1G05560; Name=AT1G05560.2; Note=UDP-glucosyltransferase 75B1; symbol=UGT75B1; Alias=UGT1, UDP-GLUCOSE TRANSFERASE 1; full_name=UDP-glucosyltransferase 75B1; curator_summary=A UDP-glucose transferase localized in the phragmoplast. It has been co-purified with the callose synthase complex and may transfer UDP-glucose from sucrose synthase to the callose synthase and thus help form a substrate channel for the synthesis of callose at the forming cell plate. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid. UGT1 encodes a protein with glucosyltransferase activity with high sequence homology to UGT2 (AT1G05530). It belongs to an UGT subfamily that binds UDP-glucose but not UDP-glucuronate%2C UDP-galactose%2C or UDP-rhamnose as the glycosyl donor. UGT1 was shown to be able to use abscisic acid as glycosylation substrate in the presence of UDP-glucose. UGT1/UGT75B1 catalyzes the formation of the p-aminobenzoate-glucose ester in vitro and in vivo. It appears to be the enzyme predominantly responsible for pABA-Glc formation in Arabidopsis based on assays in leaves%2C flowers%2C and siliques.; computational_description=UDP-glucosyltransferase 75B1 (UGT75B1)%3B CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213)%3B BEST Arabidopsis thaliana protein match is: UDP-glucosyl transferase 75B2 (TAIR:AT1G05530.1)%3B Has 7961 Blast hits to 7890 proteins in 509 species: Archae - 0%3B Bacteria - 579%3B Metazoa - 2125%3B Fungi - 39%3B Plants - 5043%3B Viruses - 112%3B Other Eukaryotes - 63 (source: NCBI BLink).; Dbxref=PMID:11042207, PMID:11641410, PMID:11283335, PMID:12721858, PMID:15082927, PMID:15319476, PMID:15824099, PMID:16307367, PMID:17304219, PMID:17369372, PMID:18252844, PMID:18334669, PMID:18385129, PMID:18539778, PMID:18702669, PMID:18775970, PMID:20687615, locus:2201031; locus_type=protein_coding
AT1G05570.1	chr1:001647880	0.0	C/1647880-1648128,1648227-1648412,1648499-1648549,1648626-1649426,1649531-1649760,1649850-1649962,1650044-1650127,1650216-1650334,1650457-1650576,1650728-1650887,1650982-1651171,1651256-1651324,1651437-1651562,1651648-1651757,1651833-1651984,1652114-1652243,1652327-1652424,1652514-1652637,1652719-1652879,1652967-1653051,1653823-1653917,1654019-1654156,1654282-1654368,1654451-1654500,1654588-1654669,1654832-1654892,1654976-1655028,1655120-1655457,1655631-1655748,1655830-1655949,1656201-1656294,1656391-1656467,1656555-1656692,1656795-1656921,1657067-1657158,1657263-1657355,1657440-1657556,1657641-1657751,1657888-1657981,1658084-1658205,1658299-1658399,1658491-1658677	AT1G05570.1 CDS AT1G05570 ID=AT1G05570.1; Parent=AT1G05570; Name=AT1G05570.1; Note=callose synthase 1; curator_summary=Encodes a callose synthase 1 catalytic subunit . Member of Glycosyltransferase Family- 48.; conf_class=4; symbol=CALS1; Alias=ATGSL06, ATGSL6, GSL06, GSL6, GLUCAN SYNTHASE-LIKE 6; full_name=callose synthase 1; computational_description=callose synthase 1 (CALS1)%3B FUNCTIONS IN: transferase activity%2C transferring glycosyl groups%2C 1%2C3-beta-glucan synthase activity%3B INVOLVED IN: 1%2C3-beta-glucan biosynthetic process%3B LOCATED IN: 1%2C3-beta-glucan synthase complex%2C plasma membrane%2C cell plate%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Glycosyl transferase%2C family 48 (InterPro:IPR003440)%2C Protein of unknown function DUF605 (InterPro:IPR006745)%3B BEST Arabidopsis thaliana protein match is: glucan synthase-like 3 (TAIR:AT2G31960.2)%3B Has 1391 Blast hits to 1051 proteins in 182 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 73%3B Fungi - 706%3B Plants - 540%3B Viruses - 0%3B Other Eukaryotes - 72 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:11785931, PMID:11283335, PMID:11283334, PMID:14555698, PMID:15047898, PMID:15235117, PMID:14742872, PMID:16258012, PMID:17142483, PMID:17189325, PMID:17149585, PMID:17329565, PMID:18650403, PMID:18807070, PMID:18805951, PMID:18796151, PMID:18831797, PMID:19269997, PMID:21451254, PMID:21116665, PMID:22195570, locus:2031938; locus_type=protein_coding
AT1G05570.2	chr1:001647880	0.0	C/1647880-1648128,1648227-1648412,1648499-1648549,1648626-1649426,1649531-1649760,1649850-1649962,1650044-1650127,1650216-1650334,1650457-1650576,1650728-1650887,1650982-1651171,1651256-1651324,1651437-1651562,1651648-1651757,1651833-1651984,1652114-1652243,1652327-1652424,1652514-1652637,1652719-1652879,1652967-1653051,1653823-1653917,1654019-1654156,1654282-1654368,1654451-1654500,1654588-1654669,1654832-1654892,1654976-1655028,1655120-1655162,1655286-1655457,1655631-1655748,1655830-1655949,1656201-1656294,1656391-1656467,1656555-1656692,1656795-1656921,1657067-1657158,1657263-1657355,1657440-1657556,1657641-1657751,1657888-1657981,1658084-1658205,1658299-1658399,1658491-1658677	AT1G05570.2 CDS AT1G05570 ID=AT1G05570.2; Parent=AT1G05570; Name=AT1G05570.2; Note=callose synthase 1; curator_summary=Encodes a callose synthase 1 catalytic subunit . Member of Glycosyltransferase Family- 48.; conf_class=4; symbol=CALS1; Alias=ATGSL06, ATGSL6, GSL06, GSL6, GLUCAN SYNTHASE-LIKE 6; full_name=callose synthase 1; computational_description=callose synthase 1 (CALS1)%3B FUNCTIONS IN: transferase activity%2C transferring glycosyl groups%2C 1%2C3-beta-glucan synthase activity%3B INVOLVED IN: 1%2C3-beta-glucan biosynthetic process%3B LOCATED IN: 1%2C3-beta-glucan synthase complex%2C plasma membrane%2C cell plate%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Glycosyl transferase%2C family 48 (InterPro:IPR003440)%2C Protein of unknown function DUF605 (InterPro:IPR006745)%3B BEST Arabidopsis thaliana protein match is: glucan synthase-like 3 (TAIR:AT2G31960.2)%3B Has 1391 Blast hits to 1051 proteins in 182 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 73%3B Fungi - 706%3B Plants - 540%3B Viruses - 0%3B Other Eukaryotes - 72 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:11785931, PMID:11283335, PMID:11283334, PMID:14555698, PMID:15047898, PMID:15235117, PMID:14742872, PMID:16258012, PMID:17142483, PMID:17189325, PMID:17149585, PMID:17329565, PMID:18650403, PMID:18807070, PMID:18805951, PMID:18796151, PMID:18831797, PMID:19269997, PMID:21451254, PMID:21116665, PMID:22195570, locus:2031938; locus_type=protein_coding
AT1G05570.3	chr1:001647880	0.0	C/1647880-1648128,1648227-1648412,1648499-1648549,1648626-1649426,1649531-1649760,1649850-1649962,1650044-1650127,1650216-1650334,1650457-1650576,1650728-1650887,1650982-1651171,1651256-1651324,1651437-1651562,1651648-1651757,1651833-1651984,1652114-1652243,1652327-1652424,1652514-1652637,1652719-1652879,1652967-1653051,1653823-1653917,1654019-1654156,1654282-1654368,1654451-1654500,1654588-1654669,1654832-1654892,1654976-1655028,1655120-1655457,1655631-1655748,1655830-1655949,1656201-1656294,1656391-1656467,1656555-1656692,1656795-1656921,1657067-1657158,1657263-1657355,1657440-1657556,1657641-1657751,1657888-1657981,1658084-1658205,1658299-1658399,1658491-1658677	AT1G05570.3 CDS AT1G05570 ID=AT1G05570.3; Parent=AT1G05570; Name=AT1G05570.3; Note=callose synthase 1; symbol=CALS1; Alias=ATGSL06, ATGSL6, GSL06, GSL6, GLUCAN SYNTHASE-LIKE 6; full_name=callose synthase 1; Dbxref=PMID:11785931, PMID:11283335, PMID:11283334, PMID:14555698, PMID:15047898, PMID:15235117, PMID:14742872, PMID:16258012, PMID:17142483, PMID:17189325, PMID:17149585, PMID:17329565, PMID:18650403, PMID:18807070, PMID:18805951, PMID:18796151, PMID:18831797, PMID:19269997, PMID:21451254, PMID:21116665, PMID:22195570, locus:2031938; curator_summary=Encodes a callose synthase 1 catalytic subunit . Member of Glycosyltransferase Family- 48.; computational_description=callose synthase 1 (CALS1)%3B FUNCTIONS IN: transferase activity%2C transferring glycosyl groups%2C 1%2C3-beta-glucan synthase activity%3B INVOLVED IN: 1%2C3-beta-glucan biosynthetic process%3B LOCATED IN: 1%2C3-beta-glucan synthase complex%2C plasma membrane%2C cell plate%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Glycosyl transferase%2C family 48 (InterPro:IPR003440)%2C Protein of unknown function DUF605 (InterPro:IPR006745)%3B BEST Arabidopsis thaliana protein match is: glucan synthase-like 3 (TAIR:AT2G31960.2)%3B Has 1391 Blast hits to 1051 proteins in 182 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 73%3B Fungi - 706%3B Plants - 540%3B Viruses - 0%3B Other Eukaryotes - 72 (source: NCBI BLink).; locus_type=protein_coding
AT1G05570.4	chr1:001647880	0.0	C/1647880-1648128,1648227-1648412,1648499-1648549,1648626-1649426,1649531-1649760,1649850-1649962,1650044-1650127,1650216-1650334,1650457-1650576,1650728-1650887,1650982-1651171,1651256-1651324,1651437-1651562,1651648-1651757,1651833-1651984,1652114-1652243,1652327-1652424,1652514-1652637,1652719-1652879,1652967-1653051,1653823-1653917,1654019-1654156,1654282-1654368,1654451-1654500,1654588-1654669,1654832-1654892,1654976-1655028,1655120-1655457,1655631-1655748,1655830-1655949,1656201-1656294,1656391-1656467,1656555-1656692,1656795-1656921,1657067-1657158,1657263-1657355,1657440-1657556,1657641-1657751,1657888-1657981,1658084-1658205,1658299-1658399,1658491-1658677	AT1G05570.4 CDS AT1G05570 ID=AT1G05570.4; Parent=AT1G05570; Name=AT1G05570.4; Note=callose synthase 1; symbol=CALS1; Alias=ATGSL06, ATGSL6, GSL06, GSL6, GLUCAN SYNTHASE-LIKE 6; full_name=callose synthase 1; Dbxref=PMID:11785931, PMID:11283335, PMID:11283334, PMID:14555698, PMID:15047898, PMID:15235117, PMID:14742872, PMID:16258012, PMID:17142483, PMID:17189325, PMID:17149585, PMID:17329565, PMID:18650403, PMID:18807070, PMID:18805951, PMID:18796151, PMID:18831797, PMID:19269997, PMID:21451254, PMID:21116665, PMID:22195570, locus:2031938; curator_summary=Encodes a callose synthase 1 catalytic subunit . Member of Glycosyltransferase Family- 48.; computational_description=callose synthase 1 (CALS1)%3B FUNCTIONS IN: transferase activity%2C transferring glycosyl groups%2C 1%2C3-beta-glucan synthase activity%3B INVOLVED IN: 1%2C3-beta-glucan biosynthetic process%3B LOCATED IN: 1%2C3-beta-glucan synthase complex%2C plasma membrane%2C cell plate%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Glycosyl transferase%2C family 48 (InterPro:IPR003440)%2C Protein of unknown function DUF605 (InterPro:IPR006745)%3B BEST Arabidopsis thaliana protein match is: glucan synthase-like 3 (TAIR:AT2G31960.2)%3B Has 1391 Blast hits to 1051 proteins in 182 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 73%3B Fungi - 706%3B Plants - 540%3B Viruses - 0%3B Other Eukaryotes - 72 (source: NCBI BLink).; locus_type=protein_coding
AT1G04393.1	chr1:001653221	0.0	C/1653221-1653624	AT1G04393.1 miRNA_primary_transcript AT1G04393 ID=AT1G04393.1; Parent=AT1G04393; Alias=MI0019213; Name=ath-MIR5640; symbol=ath-MIR5640; Note=microRNA ath-MIR5640 precursor; locus_type=mirna
ath-miR5640	chr1:001653539	0.0	C/1653539-1653559	ath-miR5640 miRNA ath-miR5640 ID=ath-miR5640; Alias=MIMAT0022401; Name=ath-miR5640; Derives_from=AT1G04393.1; Note=microRNA ath-miR5640; computational_description=mature miRNA accession:MIMAT0022401
AT1G04397.1	chr1:001661408	0.0	W/1661408-1661614	AT1G04397.1 lnc_RNA AT1G04397 ID=AT1G04397.1; Parent=AT1G04397; Name=AT1G04397.1; locus_type=long_noncoding_rna
AT1G05575.1	chr1:001661829	0.0	C/1661829-1662098	AT1G05575.1 CDS AT1G05575 ID=AT1G05575.1; Parent=AT1G05575; Name=AT1G05575.1; Note=transmembrane protein; conf_class=1; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: anaerobic respiration%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 9 growth stages%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31945.1)%3B Has 63 Blast hits to 63 proteins in 10 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 63%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15720654, PMID:16258012, PMID:18305208, PMID:18650403, PMID:20097791, PMID:21443605, locus:505006102; locus_type=protein_coding
AT1G05577.1	chr1:001662643	0.0	C/1662643-1662838,1662914-1663018,1663236-1663734,1663807-1663922,1664000-1664069,1664156-1664288	AT1G05577.1 CDS AT1G05577 ID=AT1G05577.1; Parent=AT1G05577; Name=AT1G05577.1; Note=UPSTREAM OF FLC protein (DUF966); conf_class=2; computational_description=CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF966 (InterPro:IPR010369)%2C Uncharacterised conserved protein UCP031043 (InterPro:IPR021182)%3B BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF966) (TAIR:AT5G59790.1)%3B Has 167 Blast hits to 166 proteins in 16 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 166%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:504956226; locus_type=protein_coding
AT1G05580.1	chr1:001665594	0.0	C/1665594-1666943,1667237-1667778,1667999-1668455,1668540-1668794	AT1G05580.1 CDS AT1G05580 ID=AT1G05580.1; Parent=AT1G05580; Name=AT1G05580.1; Note=cation/H+ exchanger 23; curator_summary=member of Putative Na+/H+ antiporter family; conf_class=2; symbol=CHX23; Alias=ATCHX23, cation/H+ exchanger 23; full_name=cation/H+ exchanger 23; computational_description=cation/H+ exchanger 23 (CHX23)%3B FUNCTIONS IN: monovalent cation:hydrogen antiporter activity%2C sodium:hydrogen antiporter activity%3B INVOLVED IN: cation transport%3B LOCATED IN: integral to membrane%3B EXPRESSED IN: male gametophyte%2C leaf%3B CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153)%3B BEST Arabidopsis thaliana protein match is: cation/H+ exchanger 21 (TAIR:AT2G31910.1)%3B Has 6204 Blast hits to 6178 proteins in 1654 species: Archae - 257%3B Bacteria - 4841%3B Metazoa - 0%3B Fungi - 132%3B Plants - 575%3B Viruses - 0%3B Other Eukaryotes - 399 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11500563, PMID:15347787, PMID:15341627, PMID:17919328, PMID:18676662, PMID:20736450, PMID:21239645, PMID:21976771, locus:2031968; locus_type=protein_coding
AT1G05580.2	chr1:001665594	0.0	C/1665594-1666943,1667237-1667778,1667999-1668377	AT1G05580.2 CDS AT1G05580 ID=AT1G05580.2; Parent=AT1G05580; Name=AT1G05580.2; Note=cation/H+ exchanger 23; curator_summary=member of Putative Na+/H+ antiporter family; conf_class=3; symbol=CHX23; Alias=ATCHX23, cation/H+ exchanger 23; full_name=cation/H+ exchanger 23; computational_description=cation/H+ exchanger 23 (CHX23)%3B FUNCTIONS IN: monovalent cation:hydrogen antiporter activity%2C sodium:hydrogen antiporter activity%3B INVOLVED IN: cation transport%3B LOCATED IN: integral to membrane%3B EXPRESSED IN: male gametophyte%2C leaf%3B CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153)%3B BEST Arabidopsis thaliana protein match is: cation/H+ exchanger 21 (TAIR:AT2G31910.1)%3B Has 6204 Blast hits to 6178 proteins in 1654 species: Archae - 257%3B Bacteria - 4841%3B Metazoa - 0%3B Fungi - 132%3B Plants - 575%3B Viruses - 0%3B Other Eukaryotes - 399 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11500563, PMID:15347787, PMID:15341627, PMID:17919328, PMID:18676662, PMID:20736450, PMID:21239645, PMID:21976771, locus:2031968; locus_type=protein_coding
AT1G05590.1	chr1:001669871	0.0	W/1669871-1670660,1670734-1671686	AT1G05590.1 CDS AT1G05590 ID=AT1G05590.1; Parent=AT1G05590; Name=AT1G05590.1; Note=beta-hexosaminidase 2; curator_summary=Encodes a protein with %26#946%3B-hexosaminidase activity (the enzyme is active with p-nitrophenyl-%26#946%3B-N-acetylglucosaminide as substrate but displayed only a minor activity toward p-nitrophenyl-%26#946%3B-N-acetylgalactosaminide). Chitotriose-PA was digested almost completely overnight by a 50%25 ammonium sulfate fraction of a supernatant yeast expressing AtHEX3.; conf_class=1; symbol=HEXO2; Alias=ATHEX3, BETA-HEXOSAMINIDASE 3; full_name=beta-hexosaminidase 2; computational_description=beta-hexosaminidase 2 (HEXO2)%3B FUNCTIONS IN: UDP-glucosyltransferase activity%2C hexosaminidase activity%2C beta-N-acetylhexosaminidase activity%2C hydrolase activity%2C hydrolyzing O-glycosyl compounds%3B INVOLVED IN: carbohydrate metabolic process%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Glycoside hydrolase%2C family 20%2C catalytic core (InterPro:IPR015883)%2C Beta-N-acetylhexosaminidase%2C subunit a/b (InterPro:IPR015882)%2C Glycoside hydrolase%2C catalytic core (InterPro:IPR017853)%2C Glycoside hydrolase%2C family 20 (InterPro:IPR001540)%2C Glycoside hydrolase%2C subgroup%2C catalytic core (InterPro:IPR013781)%3B BEST Arabidopsis thaliana protein match is: beta-hexosaminidase 1 (TAIR:AT3G55260.1)%3B Has 3806 Blast hits to 3725 proteins in 709 species: Archae - 2%3B Bacteria - 2403%3B Metazoa - 477%3B Fungi - 234%3B Plants - 128%3B Viruses - 0%3B Other Eukaryotes - 562 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11641410, PMID:17254327, PMID:17644627, PMID:17636254, PMID:20736450, PMID:21252225, locus:2031988; locus_type=protein_coding
AT1G05590.2	chr1:001669871	0.0	W/1669871-1670660,1670734-1671686	AT1G05590.2 CDS AT1G05590 ID=AT1G05590.2; Parent=AT1G05590; Name=AT1G05590.2; Note=beta-hexosaminidase 2; symbol=HEXO2; Alias=ATHEX3, BETA-HEXOSAMINIDASE 3; full_name=beta-hexosaminidase 2; Dbxref=PMID:11641410, PMID:17254327, PMID:17644627, PMID:17636254, PMID:20736450, PMID:21252225, locus:2031988; curator_summary=Encodes a protein with %26#946%3B-hexosaminidase activity (the enzyme is active with p-nitrophenyl-%26#946%3B-N-acetylglucosaminide as substrate but displayed only a minor activity toward p-nitrophenyl-%26#946%3B-N-acetylgalactosaminide). Chitotriose-PA was digested almost completely overnight by a 50%25 ammonium sulfate fraction of a supernatant yeast expressing AtHEX3.; computational_description=beta-hexosaminidase 2 (HEXO2)%3B FUNCTIONS IN: UDP-glucosyltransferase activity%2C hexosaminidase activity%2C beta-N-acetylhexosaminidase activity%2C hydrolase activity%2C hydrolyzing O-glycosyl compounds%3B INVOLVED IN: carbohydrate metabolic process%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Glycoside hydrolase%2C family 20%2C catalytic core (InterPro:IPR015883)%2C Beta-N-acetylhexosaminidase%2C subunit a/b (InterPro:IPR015882)%2C Glycoside hydrolase%2C catalytic core (InterPro:IPR017853)%2C Glycoside hydrolase%2C family 20 (InterPro:IPR001540)%2C Glycoside hydrolase%2C subgroup%2C catalytic core (InterPro:IPR013781)%3B BEST Arabidopsis thaliana protein match is: beta-hexosaminidase 1 (TAIR:AT3G55260.1)%3B Has 3806 Blast hits to 3725 proteins in 709 species: Archae - 2%3B Bacteria - 2403%3B Metazoa - 477%3B Fungi - 234%3B Plants - 128%3B Viruses - 0%3B Other Eukaryotes - 562 (source: NCBI BLink).; locus_type=protein_coding
AT1G05590.3	chr1:001669871	0.0	W/1669871-1670660,1670734-1671686	AT1G05590.3 CDS AT1G05590 ID=AT1G05590.3; Parent=AT1G05590; Name=AT1G05590.3; Note=beta-hexosaminidase 2; symbol=HEXO2; Alias=ATHEX3, BETA-HEXOSAMINIDASE 3; full_name=beta-hexosaminidase 2; Dbxref=PMID:11641410, PMID:17254327, PMID:17644627, PMID:17636254, PMID:20736450, PMID:21252225, locus:2031988; curator_summary=Encodes a protein with %26#946%3B-hexosaminidase activity (the enzyme is active with p-nitrophenyl-%26#946%3B-N-acetylglucosaminide as substrate but displayed only a minor activity toward p-nitrophenyl-%26#946%3B-N-acetylgalactosaminide). Chitotriose-PA was digested almost completely overnight by a 50%25 ammonium sulfate fraction of a supernatant yeast expressing AtHEX3.; computational_description=beta-hexosaminidase 2 (HEXO2)%3B FUNCTIONS IN: UDP-glucosyltransferase activity%2C hexosaminidase activity%2C beta-N-acetylhexosaminidase activity%2C hydrolase activity%2C hydrolyzing O-glycosyl compounds%3B INVOLVED IN: carbohydrate metabolic process%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Glycoside hydrolase%2C family 20%2C catalytic core (InterPro:IPR015883)%2C Beta-N-acetylhexosaminidase%2C subunit a/b (InterPro:IPR015882)%2C Glycoside hydrolase%2C catalytic core (InterPro:IPR017853)%2C Glycoside hydrolase%2C family 20 (InterPro:IPR001540)%2C Glycoside hydrolase%2C subgroup%2C catalytic core (InterPro:IPR013781)%3B BEST Arabidopsis thaliana protein match is: beta-hexosaminidase 1 (TAIR:AT3G55260.1)%3B Has 3806 Blast hits to 3725 proteins in 709 species: Archae - 2%3B Bacteria - 2403%3B Metazoa - 477%3B Fungi - 234%3B Plants - 128%3B Viruses - 0%3B Other Eukaryotes - 562 (source: NCBI BLink).; locus_type=protein_coding
AT1G05600.1	chr1:001672161	0.0	W/1672161-1673675	AT1G05600.1 CDS AT1G05600 ID=AT1G05600.1; Parent=AT1G05600; Name=AT1G05600.1; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; conf_class=4; symbol=EMB3101; full_name=EMBRYO DEFECTIVE 3101; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G46100.1)%3B Has 22742 Blast hits to 7544 proteins in 214 species: Archae - 0%3B Bacteria - 12%3B Metazoa - 114%3B Fungi - 111%3B Plants - 22140%3B Viruses - 0%3B Other Eukaryotes - 365 (source: NCBI BLink).; conf_rating=***; Dbxref=locus:2031998; locus_type=protein_coding
AT1G05600.2	chr1:001672161	0.0	W/1672161-1673675	AT1G05600.2 CDS AT1G05600 ID=AT1G05600.2; Parent=AT1G05600; Name=AT1G05600.2; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; conf_class=4; symbol=EMB3101; full_name=EMBRYO DEFECTIVE 3101; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G46100.1)%3B Has 22742 Blast hits to 7544 proteins in 214 species: Archae - 0%3B Bacteria - 12%3B Metazoa - 114%3B Fungi - 111%3B Plants - 22140%3B Viruses - 0%3B Other Eukaryotes - 365 (source: NCBI BLink).; conf_rating=***; Dbxref=locus:2031998; locus_type=protein_coding
AT1G05600.3	chr1:001672161	0.0	W/1672161-1673675	AT1G05600.3 CDS AT1G05600 ID=AT1G05600.3; Parent=AT1G05600; Name=AT1G05600.3; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; symbol=EMB3101; full_name=EMBRYO DEFECTIVE 3101; Dbxref=locus:2031998; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G46100.1)%3B Has 22742 Blast hits to 7544 proteins in 214 species: Archae - 0%3B Bacteria - 12%3B Metazoa - 114%3B Fungi - 111%3B Plants - 22140%3B Viruses - 0%3B Other Eukaryotes - 365 (source: NCBI BLink).; locus_type=protein_coding
AT1G05610.1	chr1:001673895	0.0	C/1673895-1674011,1674104-1674229,1674324-1674422,1674517-1674634,1674732-1674817,1674890-1675063,1675132-1675392,1675485-1675934	AT1G05610.1 CDS AT1G05610 ID=AT1G05610.1; Parent=AT1G05610; Name=AT1G05610.1; Note=ADP-glucose pyrophosphorylase small subunit 2; curator_summary=Encodes the small subunit of ADP-glucose pyrophosphorylase. The small subunit is the catalytic isoform responsible for ADP-glucose pyrophosphorylase activity. The presence of the small subunit is required for large subunit stability. Two isoforms of the small subunit (ApS1 and ApS2) have been described. ApS2 is a minor small subunit isoform present in all plant tissues tested.; conf_class=1; symbol=APS2; full_name=ADP-glucose pyrophosphorylase small subunit 2; computational_description=ADP-glucose pyrophosphorylase small subunit 2 (APS2)%3B FUNCTIONS IN: transferase activity%2C glucose-1-phosphate adenylyltransferase activity%2C nucleotidyltransferase activity%3B INVOLVED IN: biosynthetic process%3B EXPRESSED IN: 10 plant structures%3B EXPRESSED DURING: 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: ADP-glucose pyrophosphorylase%2C conserved site (InterPro:IPR005836)%2C Trimeric LpxA-like (InterPro:IPR011004)%2C Nucleotidyl transferase (InterPro:IPR005835)%3B BEST Arabidopsis thaliana protein match is: ADP glucose pyrophosphorylase 1 (TAIR:AT5G48300.1)%3B Has 7131 Blast hits to 7129 proteins in 1626 species: Archae - 269%3B Bacteria - 4720%3B Metazoa - 15%3B Fungi - 23%3B Plants - 1553%3B Viruses - 0%3B Other Eukaryotes - 551 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12783326, PMID:12972664, PMID:14576160, PMID:15347792, PMID:15598655, PMID:16214899, PMID:18710526, PMID:23393426, PMID:25663508, locus:2032003; locus_type=protein_coding
AT1G05610.2	chr1:001673895	0.0	C/1673895-1674011,1674104-1674229,1674324-1674422,1674517-1674634,1674714-1674817,1674890-1675063,1675132-1675392,1675485-1675934	AT1G05610.2 CDS AT1G05610 ID=AT1G05610.2; Parent=AT1G05610; Name=AT1G05610.2; Note=ADP-glucose pyrophosphorylase small subunit 2; symbol=APS2; full_name=ADP-glucose pyrophosphorylase small subunit 2; curator_summary=Encodes the small subunit of ADP-glucose pyrophosphorylase. The small subunit is the catalytic isoform responsible for ADP-glucose pyrophosphorylase activity. The presence of the small subunit is required for large subunit stability. Two isoforms of the small subunit (ApS1 and ApS2) have been described. ApS2 is a minor small subunit isoform present in all plant tissues tested.; computational_description=ADP-glucose pyrophosphorylase small subunit 2 (APS2)%3B FUNCTIONS IN: transferase activity%2C glucose-1-phosphate adenylyltransferase activity%2C nucleotidyltransferase activity%3B INVOLVED IN: biosynthetic process%3B EXPRESSED IN: 10 plant structures%3B EXPRESSED DURING: 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: ADP-glucose pyrophosphorylase%2C conserved site (InterPro:IPR005836)%2C Trimeric LpxA-like (InterPro:IPR011004)%2C Nucleotidyl transferase (InterPro:IPR005835)%3B BEST Arabidopsis thaliana protein match is: ADP glucose pyrophosphorylase 1 (TAIR:AT5G48300.1)%3B Has 7131 Blast hits to 7129 proteins in 1626 species: Archae - 269%3B Bacteria - 4720%3B Metazoa - 15%3B Fungi - 23%3B Plants - 1553%3B Viruses - 0%3B Other Eukaryotes - 551 (source: NCBI BLink).; Dbxref=PMID:12783326, PMID:12972664, PMID:14576160, PMID:15347792, PMID:15598655, PMID:16214899, PMID:18710526, PMID:23393426, PMID:25663508, locus:2032003; locus_type=protein_coding
AT1TE05480	chr1:001676342	0.0	W/1676342-1676363	AT1TE05480 transposable_element AT1TE05480 ID=AT1TE05480; Name=AT1TE05480; Alias=HELITRONY1D
AT1TE05485	chr1:001676364	0.0	W/1676364-1677158	AT1TE05485 transposable_element AT1TE05485 ID=AT1TE05485; Name=AT1TE05485; Alias=ARNOLDY2
AT1TE05490	chr1:001677159	0.0	W/1677159-1677359	AT1TE05490 transposable_element AT1TE05490 ID=AT1TE05490; Name=AT1TE05490; Alias=ATREP11
AT1G05615.1	chr1:001677507	0.0	C/1677507-1677806,1677901-1677964,1678116-1678270	AT1G05615.1 CDS AT1G05615 ID=AT1G05615.1; Parent=AT1G05615; Name=AT1G05615.1; Note=B3 domain protein (DUF313); conf_class=8; computational_description=Domain of unknown function (DUF313) %3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF313 (InterPro:IPR005508)%3B BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF313) (TAIR:AT2G24670.1)%3B Has 82 Blast hits to 82 proteins in 3 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 82%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*; Dbxref=locus:504956227; locus_type=protein_coding
AT1G05620.1	chr1:001679286	0.0	W/1679286-1679337,1679601-1679716,1679824-1679883,1680121-1680306,1680401-1680505,1680623-1680719,1680914-1681021,1681162-1681297,1681419-1681527	AT1G05620.1 CDS AT1G05620 ID=AT1G05620.1; Parent=AT1G05620; Name=AT1G05620.1; Note=uridine-ribohydrolase 2; curator_summary=Encodes a cytosolic inosine nucleoside hydrolase. Transcript levels for this gene are elevated in older leaves suggesting that it may play a role in purine catabolism during senescence.; conf_class=2; symbol=URH2; Alias=NSH2, nucleoside hydrolase 2; full_name=uridine-ribohydrolase 2; computational_description=uridine-ribohydrolase 2 (URH2)%3B CONTAINS InterPro DOMAIN/s: Inosine/uridine-preferring nucleoside hydrolase (InterPro:IPR001910)%3B BEST Arabidopsis thaliana protein match is: uridine-ribohydrolase 1 (TAIR:AT2G36310.1)%3B Has 6369 Blast hits to 6297 proteins in 1349 species: Archae - 75%3B Bacteria - 4652%3B Metazoa - 179%3B Fungi - 246%3B Plants - 186%3B Viruses - 0%3B Other Eukaryotes - 1031 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11641410, PMID:19293370, PMID:20736450, PMID:21235647, PMID:21599668, locus:2032008; locus_type=protein_coding
AT1G05620.2	chr1:001679609	0.0	W/1679609-1679716,1679824-1679883,1680121-1680306,1680401-1680505,1680623-1680719,1680914-1681021,1681162-1681297,1681419-1681527	AT1G05620.2 CDS AT1G05620 ID=AT1G05620.2; Parent=AT1G05620; Name=AT1G05620.2; Note=uridine-ribohydrolase 2; curator_summary=Encodes a cytosolic inosine nucleoside hydrolase. Transcript levels for this gene are elevated in older leaves suggesting that it may play a role in purine catabolism during senescence.; conf_class=2; symbol=URH2; Alias=NSH2, nucleoside hydrolase 2; full_name=uridine-ribohydrolase 2; computational_description=uridine-ribohydrolase 2 (URH2)%3B CONTAINS InterPro DOMAIN/s: Inosine/uridine-preferring nucleoside hydrolase (InterPro:IPR001910)%3B BEST Arabidopsis thaliana protein match is: uridine-ribohydrolase 1 (TAIR:AT2G36310.1)%3B Has 6369 Blast hits to 6297 proteins in 1349 species: Archae - 75%3B Bacteria - 4652%3B Metazoa - 179%3B Fungi - 246%3B Plants - 186%3B Viruses - 0%3B Other Eukaryotes - 1031 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11641410, PMID:19293370, PMID:20736450, PMID:21235647, PMID:21599668, locus:2032008; locus_type=protein_coding
AT1G05630.1	chr1:001682483	0.0	W/1682483-1683299,1683389-1683641,1683734-1684541,1684645-1684769,1684903-1684987,1685319-1685627,1685714-1685981,1686127-1686250,1686348-1686708,1686791-1687153	AT1G05630.1 CDS AT1G05630 ID=AT1G05630.1; Parent=AT1G05630; Name=AT1G05630.1; Note=Endonuclease/exonuclease/phosphatase family protein; curator_summary=Encodes an inositol polyphosphate 5-phosphatase with phosphatase activity toward only Ins(1%2C4%2C5)P3. Induced in response to ABA and wounding treatments. Expressed in young seedlings and flowers%2C while no transcripts were detectable in maturated roots%2C stems%2C and rosette leaves Modulates the development of cotyledon veins through its regulation of auxin homeostasis. Involved in blue light light%E2%80%93stimulated increase in cytosolic calcium ion.; conf_class=4; symbol=5PTASE13; Alias=AT5PTASE13, Arabidopsis thaliana inositol-polyphosphate 5-phosphatase 13; full_name=inositol-polyphosphate 5-phosphatase 13; computational_description=5PTASE13%3B CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046)%2C Inositol polyphosphate related phosphatase (InterPro:IPR000300)%2C WD40 repeat (InterPro:IPR001680)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C Endonuclease/exonuclease/phosphatase (InterPro:IPR005135)%3B BEST Arabidopsis thaliana protein match is: endonuclease/exonuclease/phosphatase family protein (TAIR:AT2G31830.1)%3B Has 2865 Blast hits to 2115 proteins in 235 species: Archae - 0%3B Bacteria - 18%3B Metazoa - 1064%3B Fungi - 695%3B Plants - 755%3B Viruses - 0%3B Other Eukaryotes - 333 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:15040888, PMID:16299182, PMID:16299169, PMID:15574849, PMID:18775970, PMID:18931139, PMID:20736450, PMID:21677096, PMID:22253603, PMID:22573619, PMID:23505340, locus:2031933; locus_type=protein_coding
AT1G05630.2	chr1:001682483	0.0	W/1682483-1683299,1683389-1683641,1683734-1684541,1684645-1684769,1684903-1684987,1685319-1685484,1685587-1685627,1685714-1685981,1686127-1686250,1686348-1686708,1686791-1687153	AT1G05630.2 CDS AT1G05630 ID=AT1G05630.2; Parent=AT1G05630; Name=AT1G05630.2; Note=Endonuclease/exonuclease/phosphatase family protein; curator_summary=Encodes an inositol polyphosphate 5-phosphatase with phosphatase activity toward only Ins(1%2C4%2C5)P3. Induced in response to ABA and wounding treatments. Expressed in young seedlings and flowers%2C while no transcripts were detectable in maturated roots%2C stems%2C and rosette leaves Modulates the development of cotyledon veins through its regulation of auxin homeostasis. Involved in blue light light%E2%80%93stimulated increase in cytosolic calcium ion.; conf_class=2; symbol=5PTASE13; Alias=AT5PTASE13, Arabidopsis thaliana inositol-polyphosphate 5-phosphatase 13; full_name=inositol-polyphosphate 5-phosphatase 13; computational_description=5PTASE13%3B CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046)%2C Inositol polyphosphate related phosphatase (InterPro:IPR000300)%2C WD40 repeat (InterPro:IPR001680)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C Endonuclease/exonuclease/phosphatase (InterPro:IPR005135)%3B BEST Arabidopsis thaliana protein match is: endonuclease/exonuclease/phosphatase family protein (TAIR:AT2G31830.1)%3B Has 2865 Blast hits to 2115 proteins in 235 species: Archae - 0%3B Bacteria - 18%3B Metazoa - 1064%3B Fungi - 695%3B Plants - 755%3B Viruses - 0%3B Other Eukaryotes - 333 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15040888, PMID:16299182, PMID:16299169, PMID:15574849, PMID:18775970, PMID:18931139, PMID:20736450, PMID:21677096, PMID:22253603, PMID:22573619, PMID:23505340, locus:2031933; locus_type=protein_coding
AT1G05630.3	chr1:001682483	0.0	W/1682483-1683299,1683389-1683641,1683734-1684541,1684645-1684769,1684903-1684987,1685319-1685484,1685587-1685627,1685714-1685981,1686127-1686323	AT1G05630.3 CDS AT1G05630 ID=AT1G05630.3; Parent=AT1G05630; Name=AT1G05630.3; Note=Endonuclease/exonuclease/phosphatase family protein; symbol=5PTASE13; Alias=AT5PTASE13, Arabidopsis thaliana inositol-polyphosphate 5-phosphatase 13; full_name=inositol-polyphosphate 5-phosphatase 13; curator_summary=Encodes an inositol polyphosphate 5-phosphatase with phosphatase activity toward only Ins(1%2C4%2C5)P3. Induced in response to ABA and wounding treatments. Expressed in young seedlings and flowers%2C while no transcripts were detectable in maturated roots%2C stems%2C and rosette leaves Modulates the development of cotyledon veins through its regulation of auxin homeostasis. Involved in blue light light%E2%80%93stimulated increase in cytosolic calcium ion.; computational_description=5PTASE13%3B CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046)%2C Inositol polyphosphate related phosphatase (InterPro:IPR000300)%2C WD40 repeat (InterPro:IPR001680)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C Endonuclease/exonuclease/phosphatase (InterPro:IPR005135)%3B BEST Arabidopsis thaliana protein match is: endonuclease/exonuclease/phosphatase family protein (TAIR:AT2G31830.1)%3B Has 2865 Blast hits to 2115 proteins in 235 species: Archae - 0%3B Bacteria - 18%3B Metazoa - 1064%3B Fungi - 695%3B Plants - 755%3B Viruses - 0%3B Other Eukaryotes - 333 (source: NCBI BLink).; Dbxref=PMID:15040888, PMID:16299182, PMID:16299169, PMID:15574849, PMID:18775970, PMID:18931139, PMID:20736450, PMID:21677096, PMID:22253603, PMID:22573619, PMID:23505340, locus:2031933; locus_type=protein_coding
AT1G05640.1	chr1:001687436	0.0	C/1687436-1688305,1688389-1688798,1688898-1689501	AT1G05640.1 CDS AT1G05640 ID=AT1G05640.1; Parent=AT1G05640; Name=AT1G05640.1; Note=Ankyrin repeat family protein; conf_class=2; computational_description=Ankyrin repeat family protein%3B CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683)%2C Ankyrin repeat (InterPro:IPR002110)%3B BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT2G31820.1)%3B Has 67578 Blast hits to 27690 proteins in 1106 species: Archae - 88%3B Bacteria - 6425%3B Metazoa - 32117%3B Fungi - 6903%3B Plants - 5434%3B Viruses - 485%3B Other Eukaryotes - 16126 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16776300, PMID:20032078, PMID:20736450, locus:2031948; locus_type=protein_coding
AT1G05650.1	chr1:001690264	0.0	C/1690264-1690491,1690602-1690830,1690979-1691268,1691689-1692126	AT1G05650.1 CDS AT1G05650 ID=AT1G05650.1; Parent=AT1G05650; Name=AT1G05650.1; Note=Pectin lyase-like superfamily protein; conf_class=6; computational_description=Pectin lyase-like superfamily protein%3B FUNCTIONS IN: polygalacturonase activity%3B INVOLVED IN: carbohydrate metabolic process%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050)%2C Pectin lyase fold (InterPro:IPR012334)%2C Glycoside hydrolase%2C family 28 (InterPro:IPR000743)%2C Parallel beta-helix repeat (InterPro:IPR006626)%3B BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G05660.1)%3B Has 4025 Blast hits to 4009 proteins in 482 species: Archae - 4%3B Bacteria - 1133%3B Metazoa - 14%3B Fungi - 1282%3B Plants - 1474%3B Viruses - 2%3B Other Eukaryotes - 116 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:14576160, PMID:14535885, PMID:15086809, PMID:17061125, PMID:17010199, PMID:17220200, PMID:20736450, PMID:23056537, locus:2031953; locus_type=protein_coding
AT1G04403.1	chr1:001693476	0.0	C/1693476-1693804	AT1G04403.1 lnc_RNA AT1G04403 ID=AT1G04403.1; Parent=AT1G04403; Name=AT1G04403.1; locus_type=long_noncoding_rna
AT1G05660.1	chr1:001694286	0.0	C/1694286-1694513,1694620-1694848,1694996-1695285,1695621-1696058	AT1G05660.1 CDS AT1G05660 ID=AT1G05660.1; Parent=AT1G05660; Name=AT1G05660.1; Note=Pectin lyase-like superfamily protein; conf_class=3; computational_description=Pectin lyase-like superfamily protein%3B FUNCTIONS IN: polygalacturonase activity%3B INVOLVED IN: carbohydrate metabolic process%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050)%2C Pectin lyase fold (InterPro:IPR012334)%2C Glycoside hydrolase%2C family 28 (InterPro:IPR000743)%2C Parallel beta-helix repeat (InterPro:IPR006626)%3B BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G05650.1)%3B Has 4025 Blast hits to 4004 proteins in 488 species: Archae - 4%3B Bacteria - 1122%3B Metazoa - 14%3B Fungi - 1275%3B Plants - 1489%3B Viruses - 2%3B Other Eukaryotes - 119 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15086809, PMID:15047898, PMID:17010199, PMID:23056537, locus:2031963; locus_type=protein_coding
AT1G05670.1	chr1:001698574	0.0	C/1698574-1700799	AT1G05670.1 CDS AT1G05670 ID=AT1G05670.1; Parent=AT1G05670; Name=AT1G05670.1; Note=Pentatricopeptide repeat (PPR-like) superfamily protein; conf_class=1; computational_description=Pentatricopeptide repeat (PPR-like) superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G01110.1)%3B Has 76919 Blast hits to 23782 proteins in 722 species: Archae - 3%3B Bacteria - 657%3B Metazoa - 3612%3B Fungi - 1352%3B Plants - 68766%3B Viruses - 129%3B Other Eukaryotes - 2400 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15282545, PMID:16510518, PMID:20736450, locus:2031973; locus_type=protein_coding
AT1G05670.2	chr1:001698574	0.0	C/1698574-1700799	AT1G05670.2 CDS AT1G05670 ID=AT1G05670.2; Parent=AT1G05670; Name=AT1G05670.2; Note=Pentatricopeptide repeat (PPR-like) superfamily protein; conf_class=3; computational_description=Pentatricopeptide repeat (PPR-like) superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G01110.1)%3B Has 76919 Blast hits to 23782 proteins in 722 species: Archae - 3%3B Bacteria - 657%3B Metazoa - 3612%3B Fungi - 1352%3B Plants - 68766%3B Viruses - 129%3B Other Eukaryotes - 2400 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15282545, PMID:16510518, PMID:20736450, locus:2031973; locus_type=protein_coding
AT1G05670.3	chr1:001698574	0.0	C/1698574-1700799	AT1G05670.3 CDS AT1G05670 ID=AT1G05670.3; Parent=AT1G05670; Name=AT1G05670.3; Note=Pentatricopeptide repeat (PPR-like) superfamily protein; Dbxref=PMID:15282545, PMID:16510518, PMID:20736450, locus:2031973; computational_description=Pentatricopeptide repeat (PPR-like) superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G01110.1)%3B Has 76919 Blast hits to 23782 proteins in 722 species: Archae - 3%3B Bacteria - 657%3B Metazoa - 3612%3B Fungi - 1352%3B Plants - 68766%3B Viruses - 129%3B Other Eukaryotes - 2400 (source: NCBI BLink).; locus_type=protein_coding
AT1G05675.1	chr1:001701213	0.0	C/1701213-1701929,1702071-1702715	AT1G05675.1 CDS AT1G05675 ID=AT1G05675.1; Parent=AT1G05675; Name=AT1G05675.1; Note=UDP-Glycosyltransferase superfamily protein; conf_class=2; computational_description=UDP-Glycosyltransferase superfamily protein%3B FUNCTIONS IN: transferase activity%2C transferring hexosyl groups%3B INVOLVED IN: metabolic process%3B CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213)%3B BEST Arabidopsis thaliana protein match is: Uridine diphosphate glycosyltransferase 74E2 (TAIR:AT1G05680.1).; conf_rating=****; Dbxref=locus:6530298131; locus_type=protein_coding
AT1G05680.1	chr1:001703196	0.0	C/1703196-1703912,1703995-1704639	AT1G05680.1 CDS AT1G05680 ID=AT1G05680.1; Parent=AT1G05680; Name=AT1G05680.1; Note=Uridine diphosphate glycosyltransferase 74E2; curator_summary=Encodes a UDP-glucosyltransferase%2C UGT74E2%2C that acts on IBA (indole-3-butyric acid) and affects auxin homeostasis. The transcript and protein levels of this enzyme are strongly induced by H2O2 and may allow integration of ROS (reactive oxygen species) and auxin signaling. This enzyme can also transfer glycosyl groups to several compounds related to the explosive TNT when this synthetic compound is taken up from the environment.; conf_class=2; symbol=UGT74E2; full_name=Uridine diphosphate glycosyltransferase 74E2; computational_description=Uridine diphosphate glycosyltransferase 74E2 (UGT74E2)%3B CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213)%3B BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT1G05675.1)%3B Has 8397 Blast hits to 8309 proteins in 513 species: Archae - 0%3B Bacteria - 605%3B Metazoa - 2499%3B Fungi - 31%3B Plants - 5061%3B Viruses - 123%3B Other Eukaryotes - 78 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11182895, PMID:12509522, PMID:14551330, PMID:15082927, PMID:15047898, PMID:15516340, PMID:12893885, PMID:15824099, PMID:16262716, PMID:16514558, PMID:17028338, PMID:17233795, PMID:18055587, PMID:18702669, PMID:20351290, PMID:20798329, PMID:23682113, locus:2031983; locus_type=protein_coding
AT1TE05580	chr1:001705285	0.0	W/1705285-1705374	AT1TE05580 transposable_element AT1TE05580 ID=AT1TE05580; Name=AT1TE05580; Alias=HELITRONY1D
AT1TE05585	chr1:001705375	0.0	W/1705375-1706660	AT1TE05585 transposable_element AT1TE05585 ID=AT1TE05585; Name=AT1TE05585; Alias=ATREP11
AT1TE05590	chr1:001706661	0.0	C/1706661-1706725	AT1TE05590 transposable_element AT1TE05590 ID=AT1TE05590; Name=AT1TE05590; Alias=ATREP15
AT1G05690.1	chr1:001707809	0.0	W/1707809-1708027,1708105-1708235,1708312-1708926,1709003-1709132	AT1G05690.1 CDS AT1G05690 ID=AT1G05690.1; Parent=AT1G05690; Name=AT1G05690.1; Note=BTB and TAZ domain protein 3; curator_summary=BTB and TAZ domain protein. Acts redunantly with BT1 and BT2 during female gametophyte development. Acts with BT2 during male gametophyte development.; conf_class=2; symbol=BT3; full_name=BTB and TAZ domain protein 3; computational_description=BTB and TAZ domain protein 3 (BT3)%3B FUNCTIONS IN: transcription regulator activity%3B INVOLVED IN: embryo sac development%2C pollen development%3B LOCATED IN: nucleus%2C chloroplast%3B EXPRESSED IN: 15 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069)%2C Zinc finger%2C TAZ-type (InterPro:IPR000197)%2C BTB/POZ fold (InterPro:IPR011333)%2C Kelch related (InterPro:IPR013089)%2C BTB/POZ-like (InterPro:IPR000210)%3B BEST Arabidopsis thaliana protein match is: BTB and TAZ domain protein 4 (TAIR:AT5G67480.2)%3B Has 1903 Blast hits to 1903 proteins in 101 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1048%3B Fungi - 0%3B Plants - 775%3B Viruses - 0%3B Other Eukaryotes - 80 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10748221, PMID:14576160, PMID:15316289, PMID:15772280, PMID:15749712, PMID:16934950, PMID:17220202, PMID:19054356, locus:2031993; locus_type=protein_coding
AT1G05700.1	chr1:001709796	0.0	W/1709796-1709883,1709983-1710520,1710647-1711122,1711202-1711340,1711429-1711500,1711596-1711667,1711739-1711977,1712071-1712285,1712362-1712551,1712638-1712827,1712906-1713245	AT1G05700.1 CDS AT1G05700 ID=AT1G05700.1; Parent=AT1G05700; Name=AT1G05700.1; Note=Leucine-rich repeat transmembrane protein kinase protein; conf_class=4; computational_description=Leucine-rich repeat transmembrane protein kinase protein%3B FUNCTIONS IN: kinase activity%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: shoot%2C stem%2C hypocotyl%2C root%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Leucine-rich repeat (InterPro:IPR001611)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase protein (TAIR:AT4G29990.1)%3B Has 163331 Blast hits to 124125 proteins in 4749 species: Archae - 121%3B Bacteria - 14440%3B Metazoa - 44652%3B Fungi - 9862%3B Plants - 74464%3B Viruses - 498%3B Other Eukaryotes - 19294 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:12481097, PMID:15539473, PMID:20736450, locus:2031923; locus_type=protein_coding
AT1G05700.2	chr1:001709796	0.0	W/1709796-1709883,1709983-1710520,1710647-1711122,1711202-1711340,1711429-1711500,1711596-1711667,1711739-1712285,1712362-1712551,1712638-1712827,1712906-1713245	AT1G05700.2 CDS AT1G05700 ID=AT1G05700.2; Parent=AT1G05700; Name=AT1G05700.2; Note=Leucine-rich repeat transmembrane protein kinase protein; computational_description=Leucine-rich repeat transmembrane protein kinase protein%3B FUNCTIONS IN: kinase activity%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: shoot%2C stem%2C hypocotyl%2C root%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Leucine-rich repeat (InterPro:IPR001611)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase protein (TAIR:AT4G29990.1)%3B Has 163331 Blast hits to 124125 proteins in 4749 species: Archae - 121%3B Bacteria - 14440%3B Metazoa - 44652%3B Fungi - 9862%3B Plants - 74464%3B Viruses - 498%3B Other Eukaryotes - 19294 (source: NCBI BLink).; Dbxref=PMID:12481097, PMID:15539473, PMID:20736450, locus:2031923; locus_type=protein_coding
AT1G04407.1	chr1:001713479	0.0	C/1713479-1713740	AT1G04407.1 lnc_RNA AT1G04407 ID=AT1G04407.1; Parent=AT1G04407; Name=AT1G04407.1; locus_type=long_noncoding_rna
AT1G05710.10	chr1:001716198	0.0	W/1716198-1716308,1716419-1716484,1716559-1716735,1716862-1717023	AT1G05710.10 CDS AT1G05710 ID=AT1G05710.10; Parent=AT1G05710; Name=AT1G05710.10; Note=basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Dbxref=PMID:12679534, PMID:14600211, PMID:15194820, PMID:17194768, PMID:17227549, PMID:17587374, PMID:18192438, PMID:18650403, PMID:24377444, locus:2031978; computational_description=basic helix-loop-helix (bHLH) DNA-binding superfamily protein%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: response to ethylene stimulus%2C regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G31730.1)%3B Has 1005 Blast hits to 1005 proteins in 35 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1005%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; locus_type=protein_coding
AT1G05710.11	chr1:001716198	0.0	W/1716198-1716308,1716419-1716484,1716559-1716624,1716691-1716735,1716862-1717023	AT1G05710.11 CDS AT1G05710 ID=AT1G05710.11; Parent=AT1G05710; Name=AT1G05710.11; Note=basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Dbxref=PMID:12679534, PMID:14600211, PMID:15194820, PMID:17194768, PMID:17227549, PMID:17587374, PMID:18192438, PMID:18650403, PMID:24377444, locus:2031978; computational_description=basic helix-loop-helix (bHLH) DNA-binding superfamily protein%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: response to ethylene stimulus%2C regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G31730.1)%3B Has 1005 Blast hits to 1005 proteins in 35 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1005%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; locus_type=protein_coding
AT1G05710.12	chr1:001716198	0.0	W/1716198-1716308,1716419-1716484,1716559-1716624,1716691-1716735,1716862-1717023	AT1G05710.12 CDS AT1G05710 ID=AT1G05710.12; Parent=AT1G05710; Name=AT1G05710.12; Note=basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Dbxref=PMID:12679534, PMID:14600211, PMID:15194820, PMID:17194768, PMID:17227549, PMID:17587374, PMID:18192438, PMID:18650403, PMID:24377444, locus:2031978; computational_description=basic helix-loop-helix (bHLH) DNA-binding superfamily protein%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: response to ethylene stimulus%2C regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G31730.1)%3B Has 1005 Blast hits to 1005 proteins in 35 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1005%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; locus_type=protein_coding
AT1G05710.13	chr1:001716198	0.0	W/1716198-1716308,1716419-1716484,1716559-1716735,1716862-1717023	AT1G05710.13 CDS AT1G05710 ID=AT1G05710.13; Parent=AT1G05710; Name=AT1G05710.13; Note=basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Dbxref=PMID:12679534, PMID:14600211, PMID:15194820, PMID:17194768, PMID:17227549, PMID:17587374, PMID:18192438, PMID:18650403, PMID:24377444, locus:2031978; computational_description=basic helix-loop-helix (bHLH) DNA-binding superfamily protein%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: response to ethylene stimulus%2C regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G31730.1)%3B Has 1005 Blast hits to 1005 proteins in 35 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1005%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; locus_type=protein_coding
AT1G05710.14	chr1:001716198	0.0	W/1716198-1716308,1716419-1716484,1716559-1716624,1716691-1716735,1716862-1717023	AT1G05710.14 CDS AT1G05710 ID=AT1G05710.14; Parent=AT1G05710; Name=AT1G05710.14; Note=basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Dbxref=PMID:12679534, PMID:14600211, PMID:15194820, PMID:17194768, PMID:17227549, PMID:17587374, PMID:18192438, PMID:18650403, PMID:24377444, locus:2031978; computational_description=basic helix-loop-helix (bHLH) DNA-binding superfamily protein%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: response to ethylene stimulus%2C regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G31730.1)%3B Has 1005 Blast hits to 1005 proteins in 35 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1005%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; locus_type=protein_coding
AT1G05710.1	chr1:001716198	0.0	W/1716198-1716308,1716419-1716484,1716559-1716624,1716691-1716735,1716862-1717023	AT1G05710.1 CDS AT1G05710 ID=AT1G05710.1; Parent=AT1G05710; Name=AT1G05710.1; Note=basic helix-loop-helix (bHLH) DNA-binding superfamily protein; conf_class=2; computational_description=basic helix-loop-helix (bHLH) DNA-binding superfamily protein%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: response to ethylene stimulus%2C regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G31730.1)%3B Has 1005 Blast hits to 1005 proteins in 35 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1005%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12679534, PMID:14600211, PMID:15194820, PMID:17194768, PMID:17227549, PMID:17587374, PMID:18192438, PMID:18650403, PMID:24377444, locus:2031978; locus_type=protein_coding
AT1G05710.2	chr1:001716198	0.0	W/1716198-1716308,1716419-1716484,1716559-1716735,1716862-1717023	AT1G05710.2 CDS AT1G05710 ID=AT1G05710.2; Parent=AT1G05710; Name=AT1G05710.2; Note=basic helix-loop-helix (bHLH) DNA-binding superfamily protein; conf_class=2; computational_description=basic helix-loop-helix (bHLH) DNA-binding superfamily protein%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: response to ethylene stimulus%2C regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G31730.1)%3B Has 1005 Blast hits to 1005 proteins in 35 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1005%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12679534, PMID:14600211, PMID:15194820, PMID:17194768, PMID:17227549, PMID:17587374, PMID:18192438, PMID:18650403, PMID:24377444, locus:2031978; locus_type=protein_coding
AT1G05710.3	chr1:001716198	0.0	W/1716198-1716308,1716419-1716484,1716559-1716624,1716691-1716735,1716862-1717023	AT1G05710.3 CDS AT1G05710 ID=AT1G05710.3; Parent=AT1G05710; Name=AT1G05710.3; Note=basic helix-loop-helix (bHLH) DNA-binding superfamily protein; conf_class=2; computational_description=basic helix-loop-helix (bHLH) DNA-binding superfamily protein%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: response to ethylene stimulus%2C regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G31730.1)%3B Has 1005 Blast hits to 1005 proteins in 35 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1005%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12679534, PMID:14600211, PMID:15194820, PMID:17194768, PMID:17227549, PMID:17587374, PMID:18192438, PMID:18650403, PMID:24377444, locus:2031978; locus_type=protein_coding
AT1G05710.4	chr1:001716198	0.0	W/1716198-1716308,1716419-1716484,1716559-1716624,1716691-1716735,1716862-1717023	AT1G05710.4 CDS AT1G05710 ID=AT1G05710.4; Parent=AT1G05710; Name=AT1G05710.4; Note=basic helix-loop-helix (bHLH) DNA-binding superfamily protein; conf_class=2; computational_description=basic helix-loop-helix (bHLH) DNA-binding superfamily protein%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: response to ethylene stimulus%2C regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G31730.1)%3B Has 1005 Blast hits to 1005 proteins in 35 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1005%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12679534, PMID:14600211, PMID:15194820, PMID:17194768, PMID:17227549, PMID:17587374, PMID:18192438, PMID:18650403, PMID:24377444, locus:2031978; locus_type=protein_coding
AT1G05710.5	chr1:001716198	0.0	W/1716198-1716308,1716419-1716484,1716559-1716624,1716691-1716735,1716862-1717023	AT1G05710.5 CDS AT1G05710 ID=AT1G05710.5; Parent=AT1G05710; Name=AT1G05710.5; Note=basic helix-loop-helix (bHLH) DNA-binding superfamily protein; conf_class=6; computational_description=basic helix-loop-helix (bHLH) DNA-binding superfamily protein%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: response to ethylene stimulus%2C regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G31730.1)%3B Has 1005 Blast hits to 1005 proteins in 35 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1005%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:12679534, PMID:14600211, PMID:15194820, PMID:17194768, PMID:17227549, PMID:17587374, PMID:18192438, PMID:18650403, PMID:24377444, locus:2031978; locus_type=protein_coding
AT1G05710.7	chr1:001716198	0.0	W/1716198-1716308,1716419-1716484,1716559-1716735,1716862-1717023	AT1G05710.7 CDS AT1G05710 ID=AT1G05710.7; Parent=AT1G05710; Name=AT1G05710.7; Note=basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Dbxref=PMID:12679534, PMID:14600211, PMID:15194820, PMID:17194768, PMID:17227549, PMID:17587374, PMID:18192438, PMID:18650403, PMID:24377444, locus:2031978; computational_description=basic helix-loop-helix (bHLH) DNA-binding superfamily protein%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: response to ethylene stimulus%2C regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G31730.1)%3B Has 1005 Blast hits to 1005 proteins in 35 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1005%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; locus_type=protein_coding
AT1G05710.6	chr1:001716222	0.0	W/1716222-1716308,1716419-1716484,1716559-1716624,1716691-1716735,1716862-1717023	AT1G05710.6 CDS AT1G05710 ID=AT1G05710.6; Parent=AT1G05710; Name=AT1G05710.6; Note=basic helix-loop-helix (bHLH) DNA-binding superfamily protein; computational_description=basic helix-loop-helix (bHLH) DNA-binding superfamily protein%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: response to ethylene stimulus%2C regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G31730.1)%3B Has 1005 Blast hits to 1005 proteins in 35 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1005%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=PMID:12679534, PMID:14600211, PMID:15194820, PMID:17194768, PMID:17227549, PMID:17587374, PMID:18192438, PMID:18650403, PMID:24377444, locus:2031978; locus_type=protein_coding
AT1G05710.8	chr1:001716222	0.0	W/1716222-1716308,1716419-1716484,1716559-1716735,1716862-1717023	AT1G05710.8 CDS AT1G05710 ID=AT1G05710.8; Parent=AT1G05710; Name=AT1G05710.8; Note=basic helix-loop-helix (bHLH) DNA-binding superfamily protein; computational_description=basic helix-loop-helix (bHLH) DNA-binding superfamily protein%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: response to ethylene stimulus%2C regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G31730.1)%3B Has 1005 Blast hits to 1005 proteins in 35 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1005%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=PMID:12679534, PMID:14600211, PMID:15194820, PMID:17194768, PMID:17227549, PMID:17587374, PMID:18192438, PMID:18650403, PMID:24377444, locus:2031978; locus_type=protein_coding
AT1G05710.9	chr1:001716222	0.0	W/1716222-1716308,1716419-1716484,1716559-1716735,1716862-1717023	AT1G05710.9 CDS AT1G05710 ID=AT1G05710.9; Parent=AT1G05710; Name=AT1G05710.9; Note=basic helix-loop-helix (bHLH) DNA-binding superfamily protein; computational_description=basic helix-loop-helix (bHLH) DNA-binding superfamily protein%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: response to ethylene stimulus%2C regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G31730.1)%3B Has 1005 Blast hits to 1005 proteins in 35 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1005%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=PMID:12679534, PMID:14600211, PMID:15194820, PMID:17194768, PMID:17227549, PMID:17587374, PMID:18192438, PMID:18650403, PMID:24377444, locus:2031978; locus_type=protein_coding
AT1G05720.1	chr1:001717677	0.0	C/1717677-1717749,1718120-1718301,1718430-1718488,1718672-1718849	AT1G05720.1 CDS AT1G05720 ID=AT1G05720.1; Parent=AT1G05720; Name=AT1G05720.1; Note=selenoprotein family protein; conf_class=2; computational_description=selenoprotein family protein%3B FUNCTIONS IN: selenium binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Sep15/SelM redox (InterPro:IPR014912)%3B Has 200 Blast hits to 200 proteins in 73 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 137%3B Fungi - 0%3B Plants - 49%3B Viruses - 0%3B Other Eukaryotes - 14 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18178671, PMID:18315867, PMID:18650403, locus:2031928; locus_type=protein_coding
AT1G04413.1	chr1:001717730	0.0	W/1717730-1718089	AT1G04413.1 antisense_lncRNA AT1G04413 ID=AT1G04413.1; Parent=AT1G04413; Name=AT1G04413.1; description=Natural antisense transcript overlaps with AT1G05720; Note=Natural antisense transcript overlaps with AT1G05720; locus_type=antisense_long_noncoding_rna
AT1G05730.1	chr1:001719107	0.0	W/1719107-1719235,1719760-1719897,1719977-1720159	AT1G05730.1 CDS AT1G05730 ID=AT1G05730.1; Parent=AT1G05730; Name=AT1G05730.1; Note=FAM136A-like protein (DUF842); conf_class=1; computational_description=Eukaryotic protein of unknown function (DUF842)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF842%2C eukaryotic (InterPro:IPR008560)%3B BEST Arabidopsis thaliana protein match is: Eukaryotic protein of unknown function (DUF842) (TAIR:AT2G31725.1)%3B Has 245 Blast hits to 245 proteins in 78 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 169%3B Fungi - 0%3B Plants - 65%3B Viruses - 0%3B Other Eukaryotes - 11 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:17122067, locus:2031943; locus_type=protein_coding
AT1G04417.1	chr1:001719300	0.0	C/1719300-1719659	AT1G04417.1 antisense_lncRNA AT1G04417 ID=AT1G04417.1; Parent=AT1G04417; Name=AT1G04417.1; description=Natural antisense transcript overlaps with AT1G05730; Note=Natural antisense transcript overlaps with AT1G05730; locus_type=antisense_long_noncoding_rna
AT1G05730.2	chr1:001719727	0.0	W/1719727-1719897,1719977-1720159	AT1G05730.2 CDS AT1G05730 ID=AT1G05730.2; Parent=AT1G05730; Name=AT1G05730.2; Note=FAM136A-like protein (DUF842); computational_description=Eukaryotic protein of unknown function (DUF842)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF842%2C eukaryotic (InterPro:IPR008560)%3B BEST Arabidopsis thaliana protein match is: Eukaryotic protein of unknown function (DUF842) (TAIR:AT2G31725.1)%3B Has 245 Blast hits to 245 proteins in 78 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 169%3B Fungi - 0%3B Plants - 65%3B Viruses - 0%3B Other Eukaryotes - 11 (source: NCBI BLink).; Dbxref=PMID:17122067, locus:2031943; locus_type=protein_coding
AT1G05740.1	chr1:001720674	0.0	W/1720674-1720802,1720923-1721093,1721172-1721309	AT1G05740.1 CDS AT1G05740 ID=AT1G05740.1; Parent=AT1G05740; Name=AT1G05740.1; Note=FAM136A-like protein (DUF842); conf_class=6; computational_description=Eukaryotic protein of unknown function (DUF842)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF842%2C eukaryotic (InterPro:IPR008560)%3B BEST Arabidopsis thaliana protein match is: Eukaryotic protein of unknown function (DUF842) (TAIR:AT1G05730.1)%3B Has 144 Blast hits to 144 proteins in 44 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 83%3B Fungi - 0%3B Plants - 58%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).; conf_rating=**; Dbxref=locus:2031958; locus_type=protein_coding
AT1G05750.1	chr1:001721523	0.0	W/1721523-1723025	AT1G05750.1 CDS AT1G05750 ID=AT1G05750.1; Parent=AT1G05750; Name=AT1G05750.1; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; curator_summary=Encodes a pentatricopeptide repeat protein required for editing of rpoA and clpP chloroplast transcripts.; conf_class=1; symbol=PDE247; Alias=CLB19; full_name=pigment defective 247; computational_description=pigment defective 247 (PDE247)%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: mitochondrial editing factor 21 (TAIR:AT2G20540.1)%3B Has 41993 Blast hits to 13871 proteins in 254 species: Archae - 1%3B Bacteria - 18%3B Metazoa - 75%3B Fungi - 77%3B Plants - 41230%3B Viruses - 0%3B Other Eukaryotes - 592 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14576160, PMID:14657372, PMID:15272878, PMID:15565108, PMID:17726051, PMID:19395655, PMID:18657233, PMID:19934379, PMID:25154054, PMID:25649437, locus:2198678; locus_type=protein_coding
AT1G05750.2	chr1:001721523	0.0	W/1721523-1723025	AT1G05750.2 CDS AT1G05750 ID=AT1G05750.2; Parent=AT1G05750; Name=AT1G05750.2; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; symbol=PDE247; Alias=CLB19; full_name=pigment defective 247; Dbxref=PMID:14576160, PMID:14657372, PMID:15272878, PMID:15565108, PMID:17726051, PMID:19395655, PMID:18657233, PMID:19934379, PMID:25154054, PMID:25649437, locus:2198678; curator_summary=Encodes a pentatricopeptide repeat protein required for editing of rpoA and clpP chloroplast transcripts.; computational_description=pigment defective 247 (PDE247)%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: mitochondrial editing factor 21 (TAIR:AT2G20540.1)%3B Has 41993 Blast hits to 13871 proteins in 254 species: Archae - 1%3B Bacteria - 18%3B Metazoa - 75%3B Fungi - 77%3B Plants - 41230%3B Viruses - 0%3B Other Eukaryotes - 592 (source: NCBI BLink).; locus_type=protein_coding
AT1G05760.1	chr1:001723797	0.0	C/1723797-1724114,1724234-1724440	AT1G05760.1 CDS AT1G05760 ID=AT1G05760.1; Parent=AT1G05760; Name=AT1G05760.1; Note=Mannose-binding lectin superfamily protein; curator_summary=Specifically restrict the long-distance movement of tobacco etch potyvirus (TEV) without involving either hypersensitive cell death or systemic acquired resistance; conf_class=1; symbol=RTM1; full_name=restricted tev movement 1; computational_description=restricted tev movement 1 (RTM1)%3B FUNCTIONS IN: sugar binding%3B INVOLVED IN: response to virus%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229)%3B BEST Arabidopsis thaliana protein match is: Mannose-binding lectin superfamily protein (TAIR:AT1G05770.1)%3B Has 829 Blast hits to 525 proteins in 30 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 828%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:10760245, PMID:10618445, PMID:9628015, PMID:11743111, PMID:15282545, PMID:15923329, PMID:19737103, PMID:20736450, PMID:20930558, PMID:25714357, locus:2198683; locus_type=protein_coding
AT1G05760.2	chr1:001723797	0.0	C/1723797-1724114,1724234-1724512	AT1G05760.2 CDS AT1G05760 ID=AT1G05760.2; Parent=AT1G05760; Name=AT1G05760.2; Note=Mannose-binding lectin superfamily protein; symbol=RTM1; full_name=restricted tev movement 1; curator_summary=Specifically restrict the long-distance movement of tobacco etch potyvirus (TEV) without involving either hypersensitive cell death or systemic acquired resistance; computational_description=restricted tev movement 1 (RTM1)%3B FUNCTIONS IN: sugar binding%3B INVOLVED IN: response to virus%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229)%3B BEST Arabidopsis thaliana protein match is: Mannose-binding lectin superfamily protein (TAIR:AT1G05770.1)%3B Has 829 Blast hits to 525 proteins in 30 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 828%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; Dbxref=PMID:10760245, PMID:10618445, PMID:9628015, PMID:11743111, PMID:15282545, PMID:15923329, PMID:19737103, PMID:20736450, PMID:20930558, PMID:25714357, locus:2198683; locus_type=protein_coding
AT1G05770.1	chr1:001725547	0.0	C/1725547-1725882,1726032-1726250	AT1G05770.1 CDS AT1G05770 ID=AT1G05770.1; Parent=AT1G05770; Name=AT1G05770.1; Note=Mannose-binding lectin superfamily protein; conf_class=2; computational_description=Mannose-binding lectin superfamily protein%3B CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229)%3B BEST Arabidopsis thaliana protein match is: Mannose-binding lectin superfamily protein (TAIR:AT1G05760.1)%3B Has 502 Blast hits to 381 proteins in 24 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 502%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:20736450, locus:2198693; locus_type=protein_coding
AT1G05780.1	chr1:001726761	0.0	W/1726761-1726857,1727957-1728180	AT1G05780.1 CDS AT1G05780 ID=AT1G05780.1; Parent=AT1G05780; Name=AT1G05780.1; Note=Vacuolar ATPase assembly integral membrane protein VMA21-like domain-containing protein; conf_class=2; computational_description=Vacuolar ATPase assembly integral membrane protein VMA21-like domain%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: Vacuolar ATPase assembly integral membrane protein VMA21-like domain (InterPro:IPR019013)%3B BEST Arabidopsis thaliana protein match is: Vacuolar ATPase assembly integral membrane protein VMA21-like domain (TAIR:AT2G31710.1)%3B Has 33 Blast hits to 33 proteins in 9 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 33%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:20736450, locus:2198703; locus_type=protein_coding
AT1G04423.1	chr1:001727263	0.0	W/1727263-1727415	AT1G04423.1 miRNA_primary_transcript AT1G04423 ID=AT1G04423.1; Parent=AT1G04423; Alias=MI0019240; Name=ath-MIR5656; symbol=ath-MIR5656; Note=microRNA ath-MIR5656 precursor; locus_type=mirna
ath-miR5656	chr1:001727351	0.0	W/1727351-1727371	ath-miR5656 miRNA ath-miR5656 ID=ath-miR5656; Alias=MIMAT0022429; Name=ath-miR5656; Derives_from=AT1G04423.1; Note=microRNA ath-miR5656; computational_description=mature miRNA accession:MIMAT0022429
AT1G05783.1	chr1:001728658	0.0	C/1728658-1728663,1728758-1728803,1728864-1728883,1729104-1729149,1729358-1729575	AT1G05783.1 CDS AT1G05783 ID=AT1G05783.1; Parent=AT1G05783; Name=AT1G05783.1; Note=hypothetical protein; locus_type=protein_coding
AT1G04427.1	chr1:001729587	0.0	W/1729587-1729890	AT1G04427.1 lnc_RNA AT1G04427 ID=AT1G04427.1; Parent=AT1G04427; Name=AT1G04427.1; locus_type=long_noncoding_rna
AT1G05785.1	chr1:001730981	0.0	W/1730981-1731008,1731294-1731385,1731467-1731547,1731631-1731728,1732014-1732089,1732374-1732406	AT1G05785.1 CDS AT1G05785 ID=AT1G05785.1; Parent=AT1G05785; Name=AT1G05785.1; Note=Got1/Sft2-like vescicle transport protein family; conf_class=1; computational_description=Got1/Sft2-like vescicle transport protein family%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: vesicle-mediated transport%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Vesicle transport protein%2C Got1/SFT2-like (InterPro:IPR007305)%3B BEST Arabidopsis thaliana protein match is: Got1/Sft2-like vescicle transport protein family (TAIR:AT5G01430.2)%3B Has 450 Blast hits to 450 proteins in 186 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 165%3B Fungi - 111%3B Plants - 97%3B Viruses - 0%3B Other Eukaryotes - 77 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:504956158; locus_type=protein_coding
AT1G05785.2	chr1:001730981	0.0	W/1730981-1731008,1731294-1731385,1731467-1731547,1731631-1731728,1732014-1732089,1732374-1732406	AT1G05785.2 CDS AT1G05785 ID=AT1G05785.2; Parent=AT1G05785; Name=AT1G05785.2; Note=Got1/Sft2-like vescicle transport protein family; conf_class=2; computational_description=Got1/Sft2-like vescicle transport protein family%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: vesicle-mediated transport%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Vesicle transport protein%2C Got1/SFT2-like (InterPro:IPR007305)%3B BEST Arabidopsis thaliana protein match is: Got1/Sft2-like vescicle transport protein family (TAIR:AT5G01430.2)%3B Has 450 Blast hits to 450 proteins in 186 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 165%3B Fungi - 111%3B Plants - 97%3B Viruses - 0%3B Other Eukaryotes - 77 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:504956158; locus_type=protein_coding
AT1G05785.4	chr1:001730981	0.0	W/1730981-1731008,1731294-1731385,1731467-1731547,1731631-1731728,1732014-1732089,1732158-1732184	AT1G05785.4 CDS AT1G05785 ID=AT1G05785.4; Parent=AT1G05785; Name=AT1G05785.4; Note=Got1/Sft2-like vescicle transport protein family; computational_description=Got1/Sft2-like vescicle transport protein family%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: vesicle-mediated transport%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Vesicle transport protein%2C Got1/SFT2-like (InterPro:IPR007305)%3B BEST Arabidopsis thaliana protein match is: Got1/Sft2-like vescicle transport protein family (TAIR:AT5G01430.2)%3B Has 450 Blast hits to 450 proteins in 186 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 165%3B Fungi - 111%3B Plants - 97%3B Viruses - 0%3B Other Eukaryotes - 77 (source: NCBI BLink).; Dbxref=locus:504956158; locus_type=protein_coding
AT1G05785.5	chr1:001730981	0.0	W/1730981-1731008,1731294-1731385,1731467-1731547,1731631-1731728,1732014-1732089,1732374-1732406	AT1G05785.5 CDS AT1G05785 ID=AT1G05785.5; Parent=AT1G05785; Name=AT1G05785.5; Note=Got1/Sft2-like vescicle transport protein family; Dbxref=locus:504956158; computational_description=Got1/Sft2-like vescicle transport protein family%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: vesicle-mediated transport%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Vesicle transport protein%2C Got1/SFT2-like (InterPro:IPR007305)%3B BEST Arabidopsis thaliana protein match is: Got1/Sft2-like vescicle transport protein family (TAIR:AT5G01430.2)%3B Has 450 Blast hits to 450 proteins in 186 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 165%3B Fungi - 111%3B Plants - 97%3B Viruses - 0%3B Other Eukaryotes - 77 (source: NCBI BLink).; locus_type=protein_coding
AT1G05785.6	chr1:001730981	0.0	W/1730981-1731008,1731294-1731385,1731467-1731547,1731631-1731728,1732014-1732236	AT1G05785.6 CDS AT1G05785 ID=AT1G05785.6; Parent=AT1G05785; Name=AT1G05785.6; Note=Got1/Sft2-like vescicle transport protein family; computational_description=Got1/Sft2-like vescicle transport protein family%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: vesicle-mediated transport%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Vesicle transport protein%2C Got1/SFT2-like (InterPro:IPR007305)%3B BEST Arabidopsis thaliana protein match is: Got1/Sft2-like vescicle transport protein family (TAIR:AT5G01430.2)%3B Has 450 Blast hits to 450 proteins in 186 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 165%3B Fungi - 111%3B Plants - 97%3B Viruses - 0%3B Other Eukaryotes - 77 (source: NCBI BLink).; Dbxref=locus:504956158; locus_type=protein_coding
AT1G05785.7	chr1:001730981	0.0	W/1730981-1731008,1731294-1731385,1731467-1731547,1731631-1731728,1732014-1732236	AT1G05785.7 CDS AT1G05785 ID=AT1G05785.7; Parent=AT1G05785; Name=AT1G05785.7; Note=Got1/Sft2-like vescicle transport protein family; computational_description=Got1/Sft2-like vescicle transport protein family%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: vesicle-mediated transport%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Vesicle transport protein%2C Got1/SFT2-like (InterPro:IPR007305)%3B BEST Arabidopsis thaliana protein match is: Got1/Sft2-like vescicle transport protein family (TAIR:AT5G01430.2)%3B Has 450 Blast hits to 450 proteins in 186 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 165%3B Fungi - 111%3B Plants - 97%3B Viruses - 0%3B Other Eukaryotes - 77 (source: NCBI BLink).; Dbxref=locus:504956158; locus_type=protein_coding
AT1G05785.3	chr1:001731284	0.0	W/1731284-1731385,1731467-1731547,1731631-1731728,1732014-1732089,1732374-1732406	AT1G05785.3 CDS AT1G05785 ID=AT1G05785.3; Parent=AT1G05785; Name=AT1G05785.3; Note=Got1/Sft2-like vescicle transport protein family; computational_description=Got1/Sft2-like vescicle transport protein family%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: vesicle-mediated transport%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Vesicle transport protein%2C Got1/SFT2-like (InterPro:IPR007305)%3B BEST Arabidopsis thaliana protein match is: Got1/Sft2-like vescicle transport protein family (TAIR:AT5G01430.2)%3B Has 450 Blast hits to 450 proteins in 186 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 165%3B Fungi - 111%3B Plants - 97%3B Viruses - 0%3B Other Eukaryotes - 77 (source: NCBI BLink).; Dbxref=locus:504956158; locus_type=protein_coding
AT1G05790.1	chr1:001733039	0.0	W/1733039-1733299,1733478-1733616,1733778-1733892,1734114-1734214,1734671-1734792,1734866-1734957,1735112-1735217,1735496-1735650,1735938-1736044,1736152-1736273,1736355-1736452,1736532-1736731,1736835-1737201,1737287-1737365	AT1G05790.1 CDS AT1G05790 ID=AT1G05790.1; Parent=AT1G05790; Name=AT1G05790.1; Note=lipase class 3 family protein; conf_class=6; computational_description=lipase class 3 family protein%3B FUNCTIONS IN: triglyceride lipase activity%3B INVOLVED IN: lipid metabolic process%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Lipase%2C class 3 (InterPro:IPR002921)%3B BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G42450.1)%3B Has 496 Blast hits to 490 proteins in 107 species: Archae - 0%3B Bacteria - 1%3B Metazoa - 175%3B Fungi - 34%3B Plants - 194%3B Viruses - 0%3B Other Eukaryotes - 92 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:16081527, PMID:16434153, PMID:18375658, PMID:18775970, locus:2198713; locus_type=protein_coding
AT1G05790.3	chr1:001733039	0.0	W/1733039-1733299,1733478-1733616,1733778-1733997,1734114-1734214,1734671-1734792,1734866-1734957,1735112-1735217,1735496-1735650,1735938-1736044,1736152-1736273,1736355-1736452,1736532-1736731,1736835-1737201,1737287-1737365	AT1G05790.3 CDS AT1G05790 ID=AT1G05790.3; Parent=AT1G05790; Name=AT1G05790.3; Note=lipase class 3 family protein; computational_description=lipase class 3 family protein%3B FUNCTIONS IN: triglyceride lipase activity%3B INVOLVED IN: lipid metabolic process%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Lipase%2C class 3 (InterPro:IPR002921)%3B BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G42450.1)%3B Has 496 Blast hits to 490 proteins in 107 species: Archae - 0%3B Bacteria - 1%3B Metazoa - 175%3B Fungi - 34%3B Plants - 194%3B Viruses - 0%3B Other Eukaryotes - 92 (source: NCBI BLink).; Dbxref=PMID:16081527, PMID:16434153, PMID:18375658, PMID:18775970, locus:2198713; locus_type=protein_coding
AT1G05790.4	chr1:001733039	0.0	W/1733039-1733299,1733478-1733616,1733778-1733997,1734114-1734214,1734671-1734792,1734866-1734957,1735112-1735217,1735496-1735650,1735938-1736044,1736152-1736273,1736413-1736452,1736532-1736596	AT1G05790.4 CDS AT1G05790 ID=AT1G05790.4; Parent=AT1G05790; Name=AT1G05790.4; Note=lipase class 3 family protein; computational_description=lipase class 3 family protein%3B FUNCTIONS IN: triglyceride lipase activity%3B INVOLVED IN: lipid metabolic process%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Lipase%2C class 3 (InterPro:IPR002921)%3B BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G42450.1)%3B Has 496 Blast hits to 490 proteins in 107 species: Archae - 0%3B Bacteria - 1%3B Metazoa - 175%3B Fungi - 34%3B Plants - 194%3B Viruses - 0%3B Other Eukaryotes - 92 (source: NCBI BLink).; Dbxref=PMID:16081527, PMID:16434153, PMID:18375658, PMID:18775970, locus:2198713; locus_type=protein_coding
AT1G05790.2	chr1:001733996	0.0	W/1733996-1733997,1734114-1734214,1734671-1734792,1734866-1734957,1735112-1735217,1735496-1735650,1735938-1736044,1736152-1736273,1736355-1736452,1736532-1736731,1736835-1737201,1737287-1737365	AT1G05790.2 CDS AT1G05790 ID=AT1G05790.2; Parent=AT1G05790; Name=AT1G05790.2; Note=lipase class 3 family protein; conf_class=4; computational_description=lipase class 3 family protein%3B FUNCTIONS IN: triglyceride lipase activity%3B INVOLVED IN: lipid metabolic process%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Lipase%2C class 3 (InterPro:IPR002921)%3B BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G42450.1)%3B Has 496 Blast hits to 490 proteins in 107 species: Archae - 0%3B Bacteria - 1%3B Metazoa - 175%3B Fungi - 34%3B Plants - 194%3B Viruses - 0%3B Other Eukaryotes - 92 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:16081527, PMID:16434153, PMID:18375658, PMID:18775970, locus:2198713; locus_type=protein_coding
AT1TE05700	chr1:001738944	0.0	W/1738944-1739205	AT1TE05700 transposable_element AT1TE05700 ID=AT1TE05700; Name=AT1TE05700; Alias=TA11
AT1G05800.1	chr1:001741204	0.0	W/1741204-1742619	AT1G05800.1 CDS AT1G05800 ID=AT1G05800.1; Parent=AT1G05800; Name=AT1G05800.1; Note=alpha/beta-Hydrolases superfamily protein; curator_summary=Encodes a galactolipase. Located in the chloroplast. Involved in the initial step of jasmonic acid biosynthesis. Expressed in vegetative tissues and is necessary for the biosynthesis of basal-level JAs in vegetative tissues.; conf_class=4; symbol=DGL; full_name=DONGLE; computational_description=DONGLE (DGL)%3B CONTAINS InterPro DOMAIN/s: Lipase%2C class 3 (InterPro:IPR002921)%3B BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G31690.1)%3B Has 1183 Blast hits to 1177 proteins in 252 species: Archae - 0%3B Bacteria - 234%3B Metazoa - 21%3B Fungi - 238%3B Plants - 544%3B Viruses - 3%3B Other Eukaryotes - 143 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:14576160, PMID:15130548, PMID:18375658, PMID:18667720, PMID:18267087, PMID:19527719, PMID:19704561, PMID:20348210, PMID:20855949, PMID:23505340, PMID:24430866, locus:2198728; locus_type=protein_coding
AT1G05805.1	chr1:001744843	0.0	W/1744843-1745317,1746210-1746502,1746761-1746889,1747036-1747101,1747193-1747261,1747371-1747427	AT1G05805.1 CDS AT1G05805 ID=AT1G05805.1; Parent=AT1G05805; Name=AT1G05805.1; Note=basic helix-loop-helix (bHLH) DNA-binding superfamily protein; conf_class=2; Alias=AKS2, ABA-responsive kinase substrate 2; computational_description=basic helix-loop-helix (bHLH) DNA-binding superfamily protein%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: cytosol%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G43140.2)%3B Has 2662 Blast hits to 2007 proteins in 137 species: Archae - 2%3B Bacteria - 54%3B Metazoa - 424%3B Fungi - 144%3B Plants - 1472%3B Viruses - 0%3B Other Eukaryotes - 566 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:12679534, PMID:12897250, PMID:14600211, PMID:18433157, PMID:18776641, PMID:20736450, PMID:22037706, PMID:23779086, locus:505006103; locus_type=protein_coding
AT1G05810.2	chr1:001748305	0.0	W/1748305-1748776,1749028-1749350	AT1G05810.2 CDS AT1G05810 ID=AT1G05810.2; Parent=AT1G05810; Name=AT1G05810.2; Note=Rab GTPase-like A5A protein; symbol=RABA5E; Alias=ARA, ARA-1, ATRAB11D, ATRABA5E, ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A5E; full_name=RAB GTPase homolog A5E; computational_description=RAB GTPase homolog A5E (RABA5E)%3B FUNCTIONS IN: GTP binding%3B INVOLVED IN: protein transport%2C small GTPase mediated signal transduction%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806)%2C Small GTP-binding protein (InterPro:IPR005225)%2C Small GTPase (InterPro:IPR020851)%2C Ras (InterPro:IPR013753)%2C Ras small GTPase%2C Rab type (InterPro:IPR003579)%2C Rab11-related (InterPro:IPR015595)%3B BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A5D (TAIR:AT2G31680.1)%3B Has 27587 Blast hits to 27548 proteins in 749 species: Archae - 23%3B Bacteria - 136%3B Metazoa - 14522%3B Fungi - 3761%3B Plants - 3260%3B Viruses - 20%3B Other Eukaryotes - 5865 (source: NCBI BLink).; Dbxref=PMID:2666259, PMID:12644670, PMID:20736450, PMID:24337800, locus:2198768; locus_type=protein_coding
AT1G05810.1	chr1:001748443	0.0	W/1748443-1748776,1749028-1749350	AT1G05810.1 CDS AT1G05810 ID=AT1G05810.1; Parent=AT1G05810; Name=AT1G05810.1; Note=Rab GTPase-like A5A protein; conf_class=2; symbol=RABA5E; Alias=ARA, ARA-1, ATRAB11D, ATRABA5E, ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A5E; full_name=RAB GTPase homolog A5E; computational_description=RAB GTPase homolog A5E (RABA5E)%3B FUNCTIONS IN: GTP binding%3B INVOLVED IN: protein transport%2C small GTPase mediated signal transduction%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806)%2C Small GTP-binding protein (InterPro:IPR005225)%2C Small GTPase (InterPro:IPR020851)%2C Ras (InterPro:IPR013753)%2C Ras small GTPase%2C Rab type (InterPro:IPR003579)%2C Rab11-related (InterPro:IPR015595)%3B BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A5D (TAIR:AT2G31680.1)%3B Has 27587 Blast hits to 27548 proteins in 749 species: Archae - 23%3B Bacteria - 136%3B Metazoa - 14522%3B Fungi - 3761%3B Plants - 3260%3B Viruses - 20%3B Other Eukaryotes - 5865 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:2666259, PMID:12644670, PMID:20736450, PMID:24337800, locus:2198768; locus_type=protein_coding
AT1G05820.1	chr1:001749776	0.0	W/1749776-1749913,1750362-1750520,1750628-1750739,1750856-1750975,1751115-1751272,1751527-1751706,1751931-1751965,1752074-1752230,1752503-1752556,1752638-1752730,1753098-1753240,1753393-1753547,1753661-1753767	AT1G05820.1 CDS AT1G05820 ID=AT1G05820.1; Parent=AT1G05820; Name=AT1G05820.1; Note=SIGNAL PEPTIDE PEPTIDASE-LIKE 5; conf_class=3; symbol=SPPL5; Alias=ATSPPL5, ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 5; full_name=SIGNAL PEPTIDE PEPTIDASE-LIKE 5; computational_description=SIGNAL PEPTIDE PEPTIDASE-LIKE 5 (SPPL5)%3B FUNCTIONS IN: peptidase activity%2C aspartic-type endopeptidase activity%3B INVOLVED IN: proteolysis%3B LOCATED IN: endomembrane system%2C integral to membrane%3B CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137)%2C Peptidase A22%2C presenilin signal peptide (InterPro:IPR006639)%2C Peptidase A22B%2C signal peptide peptidase (InterPro:IPR007369)%3B BEST Arabidopsis thaliana protein match is: SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (TAIR:AT2G43070.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18067581, locus:2198733; locus_type=protein_coding
AT1G05820.2	chr1:001749776	0.0	W/1749776-1749913,1750362-1750520,1750628-1750739,1750856-1750975,1751115-1751272,1751527-1751706,1751931-1751965,1752074-1752230,1752503-1752556,1752638-1752730,1753098-1753240,1753393-1753567	AT1G05820.2 CDS AT1G05820 ID=AT1G05820.2; Parent=AT1G05820; Name=AT1G05820.2; Note=SIGNAL PEPTIDE PEPTIDASE-LIKE 5; conf_class=3; symbol=SPPL5; Alias=ATSPPL5, ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 5; full_name=SIGNAL PEPTIDE PEPTIDASE-LIKE 5; computational_description=SIGNAL PEPTIDE PEPTIDASE-LIKE 5 (SPPL5)%3B FUNCTIONS IN: peptidase activity%2C aspartic-type endopeptidase activity%3B INVOLVED IN: proteolysis%3B LOCATED IN: endomembrane system%2C integral to membrane%3B CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137)%2C Peptidase A22%2C presenilin signal peptide (InterPro:IPR006639)%2C Peptidase A22B%2C signal peptide peptidase (InterPro:IPR007369)%3B BEST Arabidopsis thaliana protein match is: SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (TAIR:AT2G43070.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18067581, locus:2198733; locus_type=protein_coding
AT1G05820.3	chr1:001749776	0.0	W/1749776-1749913,1750362-1750520,1750628-1750739,1750856-1750975,1751115-1751272,1751527-1751706,1751931-1751965,1752074-1752230,1752503-1752556,1752638-1752790	AT1G05820.3 CDS AT1G05820 ID=AT1G05820.3; Parent=AT1G05820; Name=AT1G05820.3; Note=SIGNAL PEPTIDE PEPTIDASE-LIKE 5; symbol=SPPL5; Alias=ATSPPL5, ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 5; full_name=SIGNAL PEPTIDE PEPTIDASE-LIKE 5; computational_description=SIGNAL PEPTIDE PEPTIDASE-LIKE 5 (SPPL5)%3B FUNCTIONS IN: peptidase activity%2C aspartic-type endopeptidase activity%3B INVOLVED IN: proteolysis%3B LOCATED IN: endomembrane system%2C integral to membrane%3B CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137)%2C Peptidase A22%2C presenilin signal peptide (InterPro:IPR006639)%2C Peptidase A22B%2C signal peptide peptidase (InterPro:IPR007369)%3B BEST Arabidopsis thaliana protein match is: SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (TAIR:AT2G43070.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=PMID:18067581, locus:2198733; locus_type=protein_coding
AT1G05820.4	chr1:001750867	0.0	W/1750867-1750975,1751115-1751272,1751527-1751706,1751931-1751965,1752074-1752230,1752503-1752556,1752638-1752730,1753098-1753240,1753393-1753547,1753661-1753767	AT1G05820.4 CDS AT1G05820 ID=AT1G05820.4; Parent=AT1G05820; Name=AT1G05820.4; Note=SIGNAL PEPTIDE PEPTIDASE-LIKE 5; symbol=SPPL5; Alias=ATSPPL5, ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 5; full_name=SIGNAL PEPTIDE PEPTIDASE-LIKE 5; computational_description=SIGNAL PEPTIDE PEPTIDASE-LIKE 5 (SPPL5)%3B FUNCTIONS IN: peptidase activity%2C aspartic-type endopeptidase activity%3B INVOLVED IN: proteolysis%3B LOCATED IN: endomembrane system%2C integral to membrane%3B CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137)%2C Peptidase A22%2C presenilin signal peptide (InterPro:IPR006639)%2C Peptidase A22B%2C signal peptide peptidase (InterPro:IPR007369)%3B BEST Arabidopsis thaliana protein match is: SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (TAIR:AT2G43070.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=PMID:18067581, locus:2198733; locus_type=protein_coding
AT1G05830.1	chr1:001754452	0.0	W/1754452-1755077,1755262-1755313,1755408-1755482,1755563-1755782,1756068-1756194,1756311-1756415,1756562-1756767,1756865-1756957,1757047-1757144,1757227-1757388,1757734-1757877,1757974-1758021,1758146-1758263,1758341-1758406,1758523-1758584,1758737-1758793,1758924-1758992,1759115-1759310,1759618-1759863,1760191-1760252,1760335-1760412,1760717-1760812,1760902-1761005,1761084-1761225	AT1G05830.1 CDS AT1G05830 ID=AT1G05830.1; Parent=AT1G05830; Name=AT1G05830.1; Note=trithorax-like protein 2; curator_summary=Encodes a homolog of trithorax%2C a histone-lysine N-methyltransferase. Paralog of ATX1. Unlike ATX1 which is involved in trimethylating of histone H3-mysine 4%2C ATX2 is involved in dimethylating of histone H3-lysine 4. ATX1 and ATX2 influence the expression of largely nonoverlapping gene sets. The expression pattern of ATX2 is also different from that of ATX1.; conf_class=1; symbol=ATX2; Alias=SDG30, SET DOMAIN PROTEIN 30; full_name=trithorax-like protein 2; computational_description=trithorax-like protein 2 (ATX2)%3B FUNCTIONS IN: histone methyltransferase activity (H3-K4 specific)%2C DNA binding%3B INVOLVED IN: histone H3-K4 methylation%2C regulation of transcription%2C DNA-dependent%2C regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: stigma%2C rosette leaf%2C male gametophyte%2C root%3B CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214)%2C Zinc finger%2C PHD-type%2C conserved site (InterPro:IPR019786)%2C FY-rich%2C C-terminal (InterPro:IPR003889)%2C Zinc finger%2C PHD-type (InterPro:IPR001965)%2C FY-rich%2C N-terminal (InterPro:IPR003888)%2C Post-SET domain (InterPro:IPR003616)%2C FY-rich%2C C-terminal subgroup (InterPro:IPR018516)%2C PWWP (InterPro:IPR000313)%2C Zinc finger%2C FYVE/PHD-type (InterPro:IPR011011)%2C FY-rich%2C N-terminal subgroup (InterPro:IPR018518)%2C Zinc finger%2C PHD-finger (InterPro:IPR019787)%3B BEST Arabidopsis thaliana protein match is: homologue of trithorax (TAIR:AT2G31650.1)%3B Has 7263 Blast hits to 7069 proteins in 482 species: Archae - 2%3B Bacteria - 419%3B Metazoa - 3302%3B Fungi - 848%3B Plants - 1335%3B Viruses - 0%3B Other Eukaryotes - 1357 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12805620, PMID:16489130, PMID:18375658, PMID:18375656, PMID:19412892, PMID:22378382, PMID:24102415, locus:2198743; locus_type=protein_coding
AT1G05830.2	chr1:001754452	0.0	W/1754452-1755077,1755262-1755313,1755408-1755482,1755563-1755782,1756068-1756194,1756311-1756415,1756562-1756767,1756865-1756957,1757047-1757144,1757227-1757388,1757734-1757877,1757974-1758021,1758146-1758263,1758341-1758406,1758523-1758584,1758737-1758793,1758924-1758992,1759115-1759310,1759618-1759863,1760191-1760252,1760335-1760412,1760717-1760812,1760902-1761005,1761084-1761225	AT1G05830.2 CDS AT1G05830 ID=AT1G05830.2; Parent=AT1G05830; Name=AT1G05830.2; Note=trithorax-like protein 2; curator_summary=Encodes a homolog of trithorax%2C a histone-lysine N-methyltransferase. Paralog of ATX1. Unlike ATX1 which is involved in trimethylating of histone H3-mysine 4%2C ATX2 is involved in dimethylating of histone H3-lysine 4. ATX1 and ATX2 influence the expression of largely nonoverlapping gene sets. The expression pattern of ATX2 is also different from that of ATX1.; conf_class=3; symbol=ATX2; Alias=SDG30, SET DOMAIN PROTEIN 30; full_name=trithorax-like protein 2; computational_description=trithorax-like protein 2 (ATX2)%3B FUNCTIONS IN: histone methyltransferase activity (H3-K4 specific)%2C DNA binding%3B INVOLVED IN: histone H3-K4 methylation%2C regulation of transcription%2C DNA-dependent%2C regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: stigma%2C rosette leaf%2C male gametophyte%2C root%3B CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214)%2C Zinc finger%2C PHD-type%2C conserved site (InterPro:IPR019786)%2C FY-rich%2C C-terminal (InterPro:IPR003889)%2C Zinc finger%2C PHD-type (InterPro:IPR001965)%2C FY-rich%2C N-terminal (InterPro:IPR003888)%2C Post-SET domain (InterPro:IPR003616)%2C FY-rich%2C C-terminal subgroup (InterPro:IPR018516)%2C PWWP (InterPro:IPR000313)%2C Zinc finger%2C FYVE/PHD-type (InterPro:IPR011011)%2C FY-rich%2C N-terminal subgroup (InterPro:IPR018518)%2C Zinc finger%2C PHD-finger (InterPro:IPR019787)%3B BEST Arabidopsis thaliana protein match is: homologue of trithorax (TAIR:AT2G31650.1)%3B Has 7263 Blast hits to 7069 proteins in 482 species: Archae - 2%3B Bacteria - 419%3B Metazoa - 3302%3B Fungi - 848%3B Plants - 1335%3B Viruses - 0%3B Other Eukaryotes - 1357 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12805620, PMID:16489130, PMID:18375658, PMID:18375656, PMID:19412892, PMID:22378382, PMID:24102415, locus:2198743; locus_type=protein_coding
AT1G05830.3	chr1:001754452	0.0	W/1754452-1755077,1755262-1755313,1755408-1755482,1755563-1755782,1756068-1756194,1756311-1756415,1756562-1756767,1756865-1756957,1757047-1757144,1757227-1757388,1757734-1757877,1757974-1758021,1758146-1758263,1758341-1758406,1758523-1758584,1758737-1758793,1758924-1758992,1759115-1759310,1759618-1759863,1760191-1760252,1760335-1760412,1760717-1760812,1760902-1761005,1761084-1761225	AT1G05830.3 CDS AT1G05830 ID=AT1G05830.3; Parent=AT1G05830; Name=AT1G05830.3; Note=trithorax-like protein 2; symbol=ATX2; Alias=SDG30, SET DOMAIN PROTEIN 30; full_name=trithorax-like protein 2; Dbxref=PMID:12805620, PMID:16489130, PMID:18375658, PMID:18375656, PMID:19412892, PMID:22378382, PMID:24102415, locus:2198743; curator_summary=Encodes a homolog of trithorax%2C a histone-lysine N-methyltransferase. Paralog of ATX1. Unlike ATX1 which is involved in trimethylating of histone H3-mysine 4%2C ATX2 is involved in dimethylating of histone H3-lysine 4. ATX1 and ATX2 influence the expression of largely nonoverlapping gene sets. The expression pattern of ATX2 is also different from that of ATX1.; computational_description=trithorax-like protein 2 (ATX2)%3B FUNCTIONS IN: histone methyltransferase activity (H3-K4 specific)%2C DNA binding%3B INVOLVED IN: histone H3-K4 methylation%2C regulation of transcription%2C DNA-dependent%2C regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: stigma%2C rosette leaf%2C male gametophyte%2C root%3B CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214)%2C Zinc finger%2C PHD-type%2C conserved site (InterPro:IPR019786)%2C FY-rich%2C C-terminal (InterPro:IPR003889)%2C Zinc finger%2C PHD-type (InterPro:IPR001965)%2C FY-rich%2C N-terminal (InterPro:IPR003888)%2C Post-SET domain (InterPro:IPR003616)%2C FY-rich%2C C-terminal subgroup (InterPro:IPR018516)%2C PWWP (InterPro:IPR000313)%2C Zinc finger%2C FYVE/PHD-type (InterPro:IPR011011)%2C FY-rich%2C N-terminal subgroup (InterPro:IPR018518)%2C Zinc finger%2C PHD-finger (InterPro:IPR019787)%3B BEST Arabidopsis thaliana protein match is: homologue of trithorax (TAIR:AT2G31650.1)%3B Has 7263 Blast hits to 7069 proteins in 482 species: Archae - 2%3B Bacteria - 419%3B Metazoa - 3302%3B Fungi - 848%3B Plants - 1335%3B Viruses - 0%3B Other Eukaryotes - 1357 (source: NCBI BLink).; locus_type=protein_coding
AT1G05830.4	chr1:001754452	0.0	W/1754452-1755077,1755262-1755313,1755408-1755482,1755563-1755782,1756068-1756194,1756311-1756415,1756562-1756767,1756865-1756957,1757047-1757144,1757227-1757388,1757734-1757877,1757974-1758021,1758146-1758263,1758341-1758406,1758523-1758584,1758737-1758793,1758924-1758992,1759115-1759310,1759618-1759863,1760191-1760252,1760335-1760412,1760717-1760812,1760902-1761005,1761084-1761225	AT1G05830.4 CDS AT1G05830 ID=AT1G05830.4; Parent=AT1G05830; Name=AT1G05830.4; Note=trithorax-like protein 2; symbol=ATX2; Alias=SDG30, SET DOMAIN PROTEIN 30; full_name=trithorax-like protein 2; Dbxref=PMID:12805620, PMID:16489130, PMID:18375658, PMID:18375656, PMID:19412892, PMID:22378382, PMID:24102415, locus:2198743; curator_summary=Encodes a homolog of trithorax%2C a histone-lysine N-methyltransferase. Paralog of ATX1. Unlike ATX1 which is involved in trimethylating of histone H3-mysine 4%2C ATX2 is involved in dimethylating of histone H3-lysine 4. ATX1 and ATX2 influence the expression of largely nonoverlapping gene sets. The expression pattern of ATX2 is also different from that of ATX1.; computational_description=trithorax-like protein 2 (ATX2)%3B FUNCTIONS IN: histone methyltransferase activity (H3-K4 specific)%2C DNA binding%3B INVOLVED IN: histone H3-K4 methylation%2C regulation of transcription%2C DNA-dependent%2C regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: stigma%2C rosette leaf%2C male gametophyte%2C root%3B CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214)%2C Zinc finger%2C PHD-type%2C conserved site (InterPro:IPR019786)%2C FY-rich%2C C-terminal (InterPro:IPR003889)%2C Zinc finger%2C PHD-type (InterPro:IPR001965)%2C FY-rich%2C N-terminal (InterPro:IPR003888)%2C Post-SET domain (InterPro:IPR003616)%2C FY-rich%2C C-terminal subgroup (InterPro:IPR018516)%2C PWWP (InterPro:IPR000313)%2C Zinc finger%2C FYVE/PHD-type (InterPro:IPR011011)%2C FY-rich%2C N-terminal subgroup (InterPro:IPR018518)%2C Zinc finger%2C PHD-finger (InterPro:IPR019787)%3B BEST Arabidopsis thaliana protein match is: homologue of trithorax (TAIR:AT2G31650.1)%3B Has 7263 Blast hits to 7069 proteins in 482 species: Archae - 2%3B Bacteria - 419%3B Metazoa - 3302%3B Fungi - 848%3B Plants - 1335%3B Viruses - 0%3B Other Eukaryotes - 1357 (source: NCBI BLink).; locus_type=protein_coding
AT1G05835.1	chr1:001762248	0.0	W/1762248-1762308,1762380-1762702	AT1G05835.1 CDS AT1G05835 ID=AT1G05835.1; Parent=AT1G05835; Name=AT1G05835.1; Note=PHD finger protein; conf_class=2; computational_description=PHD finger protein%3B LOCATED IN: endomembrane system%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G32583.1)%3B Has 93 Blast hits to 91 proteins in 14 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 93%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16897475, locus:4010713414; locus_type=protein_coding
AT1G04433.1	chr1:001762363	0.0	C/1762363-1762693	AT1G04433.1 antisense_lncRNA AT1G04433 ID=AT1G04433.1; Parent=AT1G04433; Name=AT1G04433.1; description=Natural antisense transcript overlaps with AT1G05835; Note=Natural antisense transcript overlaps with AT1G05835; locus_type=antisense_long_noncoding_rna
AT1G05840.1	chr1:001762843	0.0	C/1762843-1762988,1763091-1763162,1763344-1763419,1763541-1763628,1763804-1763877,1763953-1764115,1764367-1764594,1765301-1765548,1765631-1765760,1765918-1766150	AT1G05840.1 CDS AT1G05840 ID=AT1G05840.1; Parent=AT1G05840; Name=AT1G05840.1; Note=Eukaryotic aspartyl protease family protein; conf_class=2; computational_description=Eukaryotic aspartyl protease family protein%3B FUNCTIONS IN: aspartic-type endopeptidase activity%3B INVOLVED IN: proteolysis%3B LOCATED IN: anchored to membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase aspartic%2C catalytic (InterPro:IPR009007)%2C Peptidase aspartic (InterPro:IPR021109)%2C Peptidase A1 (InterPro:IPR001461)%3B BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT3G02740.1)%3B Has 3016 Blast hits to 2994 proteins in 298 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 466%3B Fungi - 565%3B Plants - 1776%3B Viruses - 0%3B Other Eukaryotes - 209 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12068095, PMID:12805588, PMID:14697270, PMID:14671020, PMID:18650403, PMID:18775970, locus:2198753; locus_type=protein_coding
AT1G04437.1	chr1:001764573	0.0	W/1764573-1764829	AT1G04437.1 antisense_lncRNA AT1G04437 ID=AT1G04437.1; Parent=AT1G04437; Name=AT1G04437.1; description=Natural antisense transcript overlaps with AT1G05840; Note=Natural antisense transcript overlaps with AT1G05840; locus_type=antisense_long_noncoding_rna
AT1G05850.1	chr1:001766833	0.0	C/1766833-1767250,1767352-1767511,1767730-1768117	AT1G05850.1 CDS AT1G05850 ID=AT1G05850.1; Parent=AT1G05850; Name=AT1G05850.1; Note=Chitinase family protein; curator_summary=Encodes an endo chitinase-like protein AtCTL1. Essential for tolerance to heat%2C salt and drought stresses. Also involved in root hair development%2C cell expansion and response to cytokinin. Allelic to erh2. 11 alleles described in Hauser (1995). Mutant is defective in acquired thermotolerance%2C appears semidwarf throughout its life cycle and has extra lateral branches. There are two EMS alleles. Expression of AtHSP101 is not affected in the mutants.; conf_class=2; symbol=POM1; Alias=ATCTL1, CTL1, CHITINASE-LIKE PROTEIN 1, ELP1, ECTOPIC DEPOSITION OF LIGNIN IN PITH 1, ELP, ECTOPIC DEPOSITION OF LIGNIN IN PITH, ERH2, ECTOPIC ROOT HAIR 2, HOT2, SENSITIVE TO HOT TEMPERATURES 2; full_name=POM-POM1; computational_description=POM-POM1 (POM1)%3B FUNCTIONS IN: chitinase activity%3B INVOLVED IN: in 9 processes%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Glycoside hydrolase%2C family 19 (InterPro:IPR016283)%2C Glycoside hydrolase%2C family 19%2C catalytic (InterPro:IPR000726)%3B BEST Arabidopsis thaliana protein match is: chitinase-like protein 2 (TAIR:AT3G16920.1)%3B Has 1965 Blast hits to 1960 proteins in 417 species: Archae - 0%3B Bacteria - 470%3B Metazoa - 35%3B Fungi - 5%3B Plants - 1415%3B Viruses - 0%3B Other Eukaryotes - 40 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10806225, PMID:10760305, PMID:9165126, PMID:7743935, PMID:11826306, PMID:12215501, PMID:11678273, PMID:12805605, PMID:15908600, PMID:16159327, PMID:16415215, PMID:17156413, PMID:17540573, PMID:18650403, PMID:19500300, PMID:20007445, PMID:20056293, PMID:21949212, PMID:22327741, locus:2198688; locus_type=protein_coding
AT1G05850.2	chr1:001766833	0.0	C/1766833-1767250,1767352-1767511,1767730-1768117	AT1G05850.2 CDS AT1G05850 ID=AT1G05850.2; Parent=AT1G05850; Name=AT1G05850.2; Note=Chitinase family protein; symbol=POM1; Alias=ATCTL1, CTL1, CHITINASE-LIKE PROTEIN 1, ELP1, ECTOPIC DEPOSITION OF LIGNIN IN PITH 1, ELP, ECTOPIC DEPOSITION OF LIGNIN IN PITH, ERH2, ECTOPIC ROOT HAIR 2, HOT2, SENSITIVE TO HOT TEMPERATURES 2; full_name=POM-POM1; Dbxref=PMID:10806225, PMID:10760305, PMID:9165126, PMID:7743935, PMID:11826306, PMID:12215501, PMID:11678273, PMID:12805605, PMID:15908600, PMID:16159327, PMID:16415215, PMID:17156413, PMID:17540573, PMID:18650403, PMID:19500300, PMID:20007445, PMID:20056293, PMID:21949212, PMID:22327741, locus:2198688; curator_summary=Encodes an endo chitinase-like protein AtCTL1. Essential for tolerance to heat%2C salt and drought stresses. Also involved in root hair development%2C cell expansion and response to cytokinin. Allelic to erh2. 11 alleles described in Hauser (1995). Mutant is defective in acquired thermotolerance%2C appears semidwarf throughout its life cycle and has extra lateral branches. There are two EMS alleles. Expression of AtHSP101 is not affected in the mutants.; computational_description=POM-POM1 (POM1)%3B FUNCTIONS IN: chitinase activity%3B INVOLVED IN: in 9 processes%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Glycoside hydrolase%2C family 19 (InterPro:IPR016283)%2C Glycoside hydrolase%2C family 19%2C catalytic (InterPro:IPR000726)%3B BEST Arabidopsis thaliana protein match is: chitinase-like protein 2 (TAIR:AT3G16920.1)%3B Has 1965 Blast hits to 1960 proteins in 417 species: Archae - 0%3B Bacteria - 470%3B Metazoa - 35%3B Fungi - 5%3B Plants - 1415%3B Viruses - 0%3B Other Eukaryotes - 40 (source: NCBI BLink).; locus_type=protein_coding
AT1G05860.1	chr1:001769061	0.0	W/1769061-1769638,1770085-1770349	AT1G05860.1 CDS AT1G05860 ID=AT1G05860.1; Parent=AT1G05860; Name=AT1G05860.1; Note=INO80 complex subunit D-like protein; conf_class=1; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 11 growth stages%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31600.1)%3B Has 101 Blast hits to 100 proteins in 32 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 28%3B Fungi - 2%3B Plants - 66%3B Viruses - 0%3B Other Eukaryotes - 5 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14576160, locus:2198698; locus_type=protein_coding
AT1G05860.2	chr1:001769061	0.0	W/1769061-1769638,1770085-1770349	AT1G05860.2 CDS AT1G05860 ID=AT1G05860.2; Parent=AT1G05860; Name=AT1G05860.2; Note=INO80 complex subunit D-like protein; Dbxref=PMID:14576160, locus:2198698; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 11 growth stages%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31600.1)%3B Has 101 Blast hits to 100 proteins in 32 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 28%3B Fungi - 2%3B Plants - 66%3B Viruses - 0%3B Other Eukaryotes - 5 (source: NCBI BLink).; locus_type=protein_coding
AT1G05860.3	chr1:001769061	0.0	W/1769061-1769638,1769763-1769856	AT1G05860.3 CDS AT1G05860 ID=AT1G05860.3; Parent=AT1G05860; Name=AT1G05860.3; Note=INO80 complex subunit D-like protein; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 11 growth stages%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31600.1)%3B Has 101 Blast hits to 100 proteins in 32 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 28%3B Fungi - 2%3B Plants - 66%3B Viruses - 0%3B Other Eukaryotes - 5 (source: NCBI BLink).; Dbxref=PMID:14576160, locus:2198698; locus_type=protein_coding
AT1G05870.10	chr1:001772454	0.0	C/1772454-1772533,1772739-1773228	AT1G05870.10 CDS AT1G05870 ID=AT1G05870.10; Parent=AT1G05870; Name=AT1G05870.10; Note=hypothetical protein (DUF1685); Dbxref=PMID:12912986, PMID:12953064, locus:2198708; computational_description=Protein of unknown function (DUF1685)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: N-terminal protein myristoylation%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1685) (TAIR:AT2G31560.2)%3B Has 270 Blast hits to 270 proteins in 15 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 270%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; locus_type=protein_coding
AT1G05870.11	chr1:001772454	0.0	C/1772454-1772533,1772739-1773228	AT1G05870.11 CDS AT1G05870 ID=AT1G05870.11; Parent=AT1G05870; Name=AT1G05870.11; Note=hypothetical protein (DUF1685); Dbxref=PMID:12912986, PMID:12953064, locus:2198708; computational_description=Protein of unknown function (DUF1685)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: N-terminal protein myristoylation%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1685) (TAIR:AT2G31560.2)%3B Has 270 Blast hits to 270 proteins in 15 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 270%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; locus_type=protein_coding
AT1G05870.12	chr1:001772454	0.0	C/1772454-1772533,1772739-1773228	AT1G05870.12 CDS AT1G05870 ID=AT1G05870.12; Parent=AT1G05870; Name=AT1G05870.12; Note=hypothetical protein (DUF1685); Dbxref=PMID:12912986, PMID:12953064, locus:2198708; computational_description=Protein of unknown function (DUF1685)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: N-terminal protein myristoylation%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1685) (TAIR:AT2G31560.2)%3B Has 270 Blast hits to 270 proteins in 15 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 270%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; locus_type=protein_coding
AT1G05870.1	chr1:001772454	0.0	C/1772454-1772533,1772739-1773228	AT1G05870.1 CDS AT1G05870 ID=AT1G05870.1; Parent=AT1G05870; Name=AT1G05870.1; Note=hypothetical protein (DUF1685); conf_class=2; computational_description=Protein of unknown function (DUF1685)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: N-terminal protein myristoylation%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1685) (TAIR:AT2G31560.2)%3B Has 270 Blast hits to 270 proteins in 15 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 270%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12912986, PMID:12953064, locus:2198708; locus_type=protein_coding
AT1G05870.2	chr1:001772454	0.0	C/1772454-1772533,1772739-1773228	AT1G05870.2 CDS AT1G05870 ID=AT1G05870.2; Parent=AT1G05870; Name=AT1G05870.2; Note=hypothetical protein (DUF1685); conf_class=2; computational_description=Protein of unknown function (DUF1685)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: N-terminal protein myristoylation%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1685) (TAIR:AT2G31560.2)%3B Has 270 Blast hits to 270 proteins in 15 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 270%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12912986, PMID:12953064, locus:2198708; locus_type=protein_coding
AT1G05870.3	chr1:001772454	0.0	C/1772454-1772533,1772739-1773228	AT1G05870.3 CDS AT1G05870 ID=AT1G05870.3; Parent=AT1G05870; Name=AT1G05870.3; Note=hypothetical protein (DUF1685); conf_class=3; computational_description=Protein of unknown function (DUF1685)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: N-terminal protein myristoylation%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1685) (TAIR:AT2G31560.2)%3B Has 270 Blast hits to 270 proteins in 15 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 270%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12912986, PMID:12953064, locus:2198708; locus_type=protein_coding
AT1G05870.4	chr1:001772454	0.0	C/1772454-1772533,1772739-1773228	AT1G05870.4 CDS AT1G05870 ID=AT1G05870.4; Parent=AT1G05870; Name=AT1G05870.4; Note=hypothetical protein (DUF1685); conf_class=4; computational_description=Protein of unknown function (DUF1685)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: N-terminal protein myristoylation%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1685) (TAIR:AT2G31560.2)%3B Has 270 Blast hits to 270 proteins in 15 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 270%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:12912986, PMID:12953064, locus:2198708; locus_type=protein_coding
AT1G05870.5	chr1:001772454	0.0	C/1772454-1772533,1772739-1773228	AT1G05870.5 CDS AT1G05870 ID=AT1G05870.5; Parent=AT1G05870; Name=AT1G05870.5; Note=hypothetical protein (DUF1685); Dbxref=PMID:12912986, PMID:12953064, locus:2198708; computational_description=Protein of unknown function (DUF1685)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: N-terminal protein myristoylation%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1685) (TAIR:AT2G31560.2)%3B Has 270 Blast hits to 270 proteins in 15 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 270%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; locus_type=protein_coding
AT1G05870.6	chr1:001772454	0.0	C/1772454-1772533,1772739-1773228	AT1G05870.6 CDS AT1G05870 ID=AT1G05870.6; Parent=AT1G05870; Name=AT1G05870.6; Note=hypothetical protein (DUF1685); Dbxref=PMID:12912986, PMID:12953064, locus:2198708; computational_description=Protein of unknown function (DUF1685)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: N-terminal protein myristoylation%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1685) (TAIR:AT2G31560.2)%3B Has 270 Blast hits to 270 proteins in 15 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 270%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; locus_type=protein_coding
AT1G05870.7	chr1:001772454	0.0	C/1772454-1772533,1772739-1773228	AT1G05870.7 CDS AT1G05870 ID=AT1G05870.7; Parent=AT1G05870; Name=AT1G05870.7; Note=hypothetical protein (DUF1685); Dbxref=PMID:12912986, PMID:12953064, locus:2198708; computational_description=Protein of unknown function (DUF1685)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: N-terminal protein myristoylation%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1685) (TAIR:AT2G31560.2)%3B Has 270 Blast hits to 270 proteins in 15 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 270%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; locus_type=protein_coding
AT1G05870.8	chr1:001772454	0.0	C/1772454-1772533,1772739-1773228	AT1G05870.8 CDS AT1G05870 ID=AT1G05870.8; Parent=AT1G05870; Name=AT1G05870.8; Note=hypothetical protein (DUF1685); Dbxref=PMID:12912986, PMID:12953064, locus:2198708; computational_description=Protein of unknown function (DUF1685)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: N-terminal protein myristoylation%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1685) (TAIR:AT2G31560.2)%3B Has 270 Blast hits to 270 proteins in 15 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 270%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; locus_type=protein_coding
AT1G05870.9	chr1:001772454	0.0	C/1772454-1772533,1772739-1773228	AT1G05870.9 CDS AT1G05870 ID=AT1G05870.9; Parent=AT1G05870; Name=AT1G05870.9; Note=hypothetical protein (DUF1685); Dbxref=PMID:12912986, PMID:12953064, locus:2198708; computational_description=Protein of unknown function (DUF1685)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: N-terminal protein myristoylation%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1685) (TAIR:AT2G31560.2)%3B Has 270 Blast hits to 270 proteins in 15 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 270%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; locus_type=protein_coding
AT1G05880.1	chr1:001775655	0.0	W/1775655-1775887,1775985-1776084,1776185-1776275,1776357-1776553,1776687-1776770,1776845-1776894,1776988-1777095,1777195-1777273,1777358-1777438,1777525-1777569,1777653-1777724,1777824-1777923,1778000-1778126,1778228-1778330	AT1G05880.1 CDS AT1G05880 ID=AT1G05880.1; Parent=AT1G05880; Name=AT1G05880.1; Note=RING/U-box superfamily protein; curator_summary=Encodes ARI12 (ARIADNE 12). ARI12 belongs to a family of %E2%80%98RING between RING fingers' (RBR) domain proteins with E3 ligase activity. Expression of ARI12 is induced by UV-B exposure.; conf_class=3; symbol=ARI12; Alias=ATARI12, ARABIDOPSIS ARIADNE 12; full_name=ARIADNE 12; computational_description=ARIADNE 12 (ARI12)%3B FUNCTIONS IN: zinc ion binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B EXPRESSED IN: stem%2C root%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C6HC-type (InterPro:IPR002867)%2C Zinc finger%2C CCHC-type (InterPro:IPR001878)%3B BEST Arabidopsis thaliana protein match is: IBR domain-containing protein (TAIR:AT2G31510.1)%3B Has 1339 Blast hits to 1333 proteins in 206 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 646%3B Fungi - 141%3B Plants - 293%3B Viruses - 0%3B Other Eukaryotes - 259 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12529512, PMID:20736450, PMID:21398256, PMID:22188380, PMID:22990446, locus:2198718; locus_type=protein_coding
AT1G05880.2	chr1:001775655	0.0	W/1775655-1775887,1775985-1776084,1776185-1776275,1776357-1776553,1776666-1776770,1776845-1776894,1776988-1777095,1777195-1777273,1777358-1777438,1777525-1777569,1777653-1777724,1777824-1777923,1778000-1778126,1778228-1778330	AT1G05880.2 CDS AT1G05880 ID=AT1G05880.2; Parent=AT1G05880; Name=AT1G05880.2; Note=RING/U-box superfamily protein; curator_summary=Encodes ARI12 (ARIADNE 12). ARI12 belongs to a family of %E2%80%98RING between RING fingers' (RBR) domain proteins with E3 ligase activity. Expression of ARI12 is induced by UV-B exposure.; conf_class=3; symbol=ARI12; Alias=ATARI12, ARABIDOPSIS ARIADNE 12; full_name=ARIADNE 12; computational_description=ARIADNE 12 (ARI12)%3B FUNCTIONS IN: zinc ion binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B EXPRESSED IN: stem%2C root%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C6HC-type (InterPro:IPR002867)%2C Zinc finger%2C CCHC-type (InterPro:IPR001878)%3B BEST Arabidopsis thaliana protein match is: IBR domain-containing protein (TAIR:AT2G31510.1)%3B Has 1339 Blast hits to 1333 proteins in 206 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 646%3B Fungi - 141%3B Plants - 293%3B Viruses - 0%3B Other Eukaryotes - 259 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12529512, PMID:20736450, PMID:21398256, PMID:22188380, PMID:22990446, locus:2198718; locus_type=protein_coding
AT1G05880.3	chr1:001775655	0.0	W/1775655-1775887,1775985-1776084,1776185-1776275,1776357-1776553,1776666-1776770,1776845-1776894,1776988-1777095,1777195-1777273,1777358-1777438,1777525-1777569,1777653-1777724,1777824-1777923,1778000-1778175	AT1G05880.3 CDS AT1G05880 ID=AT1G05880.3; Parent=AT1G05880; Name=AT1G05880.3; Note=RING/U-box superfamily protein; symbol=ARI12; Alias=ATARI12, ARABIDOPSIS ARIADNE 12; full_name=ARIADNE 12; curator_summary=Encodes ARI12 (ARIADNE 12). ARI12 belongs to a family of %E2%80%98RING between RING fingers' (RBR) domain proteins with E3 ligase activity. Expression of ARI12 is induced by UV-B exposure.; computational_description=ARIADNE 12 (ARI12)%3B FUNCTIONS IN: zinc ion binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B EXPRESSED IN: stem%2C root%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C6HC-type (InterPro:IPR002867)%2C Zinc finger%2C CCHC-type (InterPro:IPR001878)%3B BEST Arabidopsis thaliana protein match is: IBR domain-containing protein (TAIR:AT2G31510.1)%3B Has 1339 Blast hits to 1333 proteins in 206 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 646%3B Fungi - 141%3B Plants - 293%3B Viruses - 0%3B Other Eukaryotes - 259 (source: NCBI BLink).; Dbxref=PMID:12529512, PMID:20736450, PMID:21398256, PMID:22188380, PMID:22990446, locus:2198718; locus_type=protein_coding
AT1G05890.1	chr1:001779631	0.0	W/1779631-1779786,1780174-1780298,1780526-1780631,1780720-1780810,1781087-1781259,1781695-1781799,1781927-1782015,1782191-1782298,1782454-1782544,1782650-1782739,1782821-1782868,1783162-1783233,1783319-1783412,1783502-1783628,1783983-1784166	AT1G05890.1 CDS AT1G05890 ID=AT1G05890.1; Parent=AT1G05890; Name=AT1G05890.1; Note=RING/U-box superfamily protein; conf_class=2; symbol=ARI5; Alias=ATARI5, ARABIDOPSIS ARIADNE 5; full_name=ARIADNE 5; computational_description=ARIADNE 5 (ARI5)%3B FUNCTIONS IN: zinc ion binding%2C nucleic acid binding%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C C6HC-type (InterPro:IPR002867)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C CCHC-type (InterPro:IPR001878)%3B BEST Arabidopsis thaliana protein match is: IBR domain-containing protein (TAIR:AT2G31510.1)%3B Has 3031 Blast hits to 3006 proteins in 232 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1283%3B Fungi - 592%3B Plants - 643%3B Viruses - 7%3B Other Eukaryotes - 506 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11983057, PMID:12529512, PMID:15923328, PMID:16626458, locus:2198723; locus_type=protein_coding
AT1G05890.2	chr1:001779631	0.0	W/1779631-1779869,1780023-1780065,1780174-1780298,1780526-1780631,1780720-1780810,1781087-1781259,1781695-1781799,1781927-1782015,1782191-1782298,1782454-1782544,1782650-1782739,1782821-1782868,1783162-1783233,1783319-1783412,1783502-1783628,1783983-1784166	AT1G05890.2 CDS AT1G05890 ID=AT1G05890.2; Parent=AT1G05890; Name=AT1G05890.2; Note=RING/U-box superfamily protein; conf_class=6; symbol=ARI5; Alias=ATARI5, ARABIDOPSIS ARIADNE 5; full_name=ARIADNE 5; computational_description=ARIADNE 5 (ARI5)%3B FUNCTIONS IN: zinc ion binding%2C nucleic acid binding%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C C6HC-type (InterPro:IPR002867)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C CCHC-type (InterPro:IPR001878)%3B BEST Arabidopsis thaliana protein match is: IBR domain-containing protein (TAIR:AT2G31510.1)%3B Has 3031 Blast hits to 3006 proteins in 232 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1283%3B Fungi - 592%3B Plants - 643%3B Viruses - 7%3B Other Eukaryotes - 506 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:11983057, PMID:12529512, PMID:15923328, PMID:16626458, locus:2198723; locus_type=protein_coding
AT1G05894.1	chr1:001784831	0.0	W/1784831-1786204	AT1G05894.1 CDS AT1G05894 ID=AT1G05894.1; Parent=AT1G05894; Name=AT1G05894.1; Note=hypothetical protein; conf_class=1; computational_description=unknown protein%3B LOCATED IN: chloroplast%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31480.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:1009023116; locus_type=protein_coding
AT1G05900.1	chr1:001786896	0.0	W/1786896-1787043,1787148-1787266,1787451-1787517,1787617-1787688,1787786-1787910,1788222-1788288,1788415-1788506,1788697-1788834,1788921-1789037	AT1G05900.1 CDS AT1G05900 ID=AT1G05900.1; Parent=AT1G05900; Name=AT1G05900.1; Note=endonuclease III 2; conf_class=2; symbol=NTH2; Alias=ATNTH2; full_name=endonuclease III 2; computational_description=endonuclease III 2 (NTH2)%3B CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257)%2C Helix-hairpin-helix DNA-binding motif%2C class 1 (InterPro:IPR003583)%2C Endonuclease III%2C conserved site-2 (InterPro:IPR004036)%2C Helix-hairpin-helix motif (InterPro:IPR000445)%2C HhH-GPD domain (InterPro:IPR003265)%3B BEST Arabidopsis thaliana protein match is: DNA glycosylase superfamily protein (TAIR:AT2G31450.1)%3B Has 11954 Blast hits to 11950 proteins in 2636 species: Archae - 340%3B Bacteria - 7920%3B Metazoa - 127%3B Fungi - 171%3B Plants - 73%3B Viruses - 0%3B Other Eukaryotes - 3323 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:16720694, PMID:19372224, locus:2198738; locus_type=protein_coding
AT1G05900.2	chr1:001786896	0.0	W/1786896-1787043,1787148-1787266,1787451-1787517,1787617-1787688,1787786-1787910,1788222-1788288,1788415-1788506,1788697-1788834,1788921-1789025,1789162-1789245,1789359-1789502	AT1G05900.2 CDS AT1G05900 ID=AT1G05900.2; Parent=AT1G05900; Name=AT1G05900.2; Note=endonuclease III 2; conf_class=2; symbol=NTH2; Alias=ATNTH2; full_name=endonuclease III 2; computational_description=endonuclease III 2 (NTH2)%3B CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257)%2C Helix-hairpin-helix DNA-binding motif%2C class 1 (InterPro:IPR003583)%2C Endonuclease III%2C conserved site-2 (InterPro:IPR004036)%2C Helix-hairpin-helix motif (InterPro:IPR000445)%2C HhH-GPD domain (InterPro:IPR003265)%3B BEST Arabidopsis thaliana protein match is: DNA glycosylase superfamily protein (TAIR:AT2G31450.1)%3B Has 11954 Blast hits to 11950 proteins in 2636 species: Archae - 340%3B Bacteria - 7920%3B Metazoa - 127%3B Fungi - 171%3B Plants - 73%3B Viruses - 0%3B Other Eukaryotes - 3323 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:16720694, PMID:19372224, locus:2198738; locus_type=protein_coding
AT1G05910.1	chr1:001790796	0.0	W/1790796-1791023,1791310-1791411,1791518-1793341,1793423-1793611,1793759-1793895,1794410-1794652,1795071-1795257,1795528-1795593,1795706-1795955,1796097-1796503	AT1G05910.1 CDS AT1G05910 ID=AT1G05910.1; Parent=AT1G05910; Name=AT1G05910.1; Note=cell division cycle protein 48-related / CDC48-like protein; conf_class=1; computational_description=cell division cycle protein 48-related / CDC48-related%3B FUNCTIONS IN: nucleoside-triphosphatase activity%2C nucleotide binding%2C ATP binding%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: ATPase%2C AAA-type%2C core (InterPro:IPR003959)%2C ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C ATPase%2C AAA-type%2C conserved site (InterPro:IPR003960)%2C Bromodomain (InterPro:IPR001487)%3B BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G15120.1)%3B Has 67654 Blast hits to 42823 proteins in 3246 species: Archae - 1526%3B Bacteria - 25275%3B Metazoa - 14857%3B Fungi - 7046%3B Plants - 4267%3B Viruses - 557%3B Other Eukaryotes - 14126 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12466527, PMID:18775970, locus:2198748; locus_type=protein_coding
AT1TE05870	chr1:001791742	0.0	W/1791742-1791914	AT1TE05870 transposable_element AT1TE05870 ID=AT1TE05870; Name=AT1TE05870; Alias=VANDAL1
AT1G05920.1	chr1:001797044	0.0	W/1797044-1797991	AT1G05920.1 CDS AT1G05920 ID=AT1G05920.1; Parent=AT1G05920; Name=AT1G05920.1; Note=B3 domain protein (DUF313); conf_class=1; computational_description=FUNCTIONS IN: DNA binding%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF313 (InterPro:IPR005508)%2C Transcriptional factor B3 (InterPro:IPR003340)%3B BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF313) (TAIR:AT3G24850.1)%3B Has 196 Blast hits to 185 proteins in 22 species: Archae - 0%3B Bacteria - 7%3B Metazoa - 15%3B Fungi - 10%3B Plants - 139%3B Viruses - 0%3B Other Eukaryotes - 25 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:2198758; locus_type=protein_coding
AT1G05930.1	chr1:001799418	0.0	W/1799418-1800289,1800849-1800933	AT1G05930.1 CDS AT1G05930 ID=AT1G05930.1; Parent=AT1G05930; Name=AT1G05930.1; Note=B3 domain protein (DUF313); conf_class=9; computational_description=FUNCTIONS IN: DNA binding%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF313 (InterPro:IPR005508)%2C Transcriptional factor B3 (InterPro:IPR003340)%3B BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF313) (TAIR:AT3G24850.1)%3B Has 119 Blast hits to 119 proteins in 5 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 119%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*; Dbxref=PMID:20736450, PMID:25002525, locus:2198763; locus_type=protein_coding
AT1G05940.1	chr1:001801365	0.0	C/1801365-1801502,1801579-1801674,1802024-1802260,1802357-1802533,1802646-1802870,1802942-1803118,1803198-1803607,1803693-1803942	AT1G05940.1 CDS AT1G05940 ID=AT1G05940.1; Parent=AT1G05940; Name=AT1G05940.1; Note=cationic amino acid transporter 9; curator_summary=Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters.; conf_class=2; symbol=CAT9; full_name=cationic amino acid transporter 9; computational_description=cationic amino acid transporter 9 (CAT9)%3B FUNCTIONS IN: cationic amino acid transmembrane transporter activity%3B INVOLVED IN: amino acid transport%2C transport%2C transmembrane transport%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Cationic amino acid transporter (InterPro:IPR015606)%2C Amino acid/polyamine transporter I (InterPro:IPR002293)%2C Amino acid permease domain (InterPro:IPR004841)%3B BEST Arabidopsis thaliana protein match is: cationic amino acid transporter 4 (TAIR:AT3G03720.1)%3B Has 34191 Blast hits to 33870 proteins in 2358 species: Archae - 527%3B Bacteria - 27519%3B Metazoa - 1917%3B Fungi - 2586%3B Plants - 410%3B Viruses - 0%3B Other Eukaryotes - 1232 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15377779, PMID:18775970, PMID:20736450, locus:2198861; locus_type=protein_coding
AT1G05940.2	chr1:001801365	0.0	C/1801365-1801502,1801579-1801674,1802024-1802260,1802357-1802533,1802646-1802870,1802942-1803118,1803198-1803503	AT1G05940.2 CDS AT1G05940 ID=AT1G05940.2; Parent=AT1G05940; Name=AT1G05940.2; Note=cationic amino acid transporter 9; symbol=CAT9; full_name=cationic amino acid transporter 9; curator_summary=Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters.; computational_description=cationic amino acid transporter 9 (CAT9)%3B FUNCTIONS IN: cationic amino acid transmembrane transporter activity%3B INVOLVED IN: amino acid transport%2C transport%2C transmembrane transport%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Cationic amino acid transporter (InterPro:IPR015606)%2C Amino acid/polyamine transporter I (InterPro:IPR002293)%2C Amino acid permease domain (InterPro:IPR004841)%3B BEST Arabidopsis thaliana protein match is: cationic amino acid transporter 4 (TAIR:AT3G03720.1)%3B Has 34191 Blast hits to 33870 proteins in 2358 species: Archae - 527%3B Bacteria - 27519%3B Metazoa - 1917%3B Fungi - 2586%3B Plants - 410%3B Viruses - 0%3B Other Eukaryotes - 1232 (source: NCBI BLink).; Dbxref=PMID:15377779, PMID:18775970, PMID:20736450, locus:2198861; locus_type=protein_coding
AT1G05940.3	chr1:001801561	0.0	C/1801561-1801674,1802024-1802260,1802357-1802533,1802646-1802870,1802942-1803118,1803198-1803607,1803693-1803942	AT1G05940.3 CDS AT1G05940 ID=AT1G05940.3; Parent=AT1G05940; Name=AT1G05940.3; Note=cationic amino acid transporter 9; symbol=CAT9; full_name=cationic amino acid transporter 9; curator_summary=Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters.; computational_description=cationic amino acid transporter 9 (CAT9)%3B FUNCTIONS IN: cationic amino acid transmembrane transporter activity%3B INVOLVED IN: amino acid transport%2C transport%2C transmembrane transport%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Cationic amino acid transporter (InterPro:IPR015606)%2C Amino acid/polyamine transporter I (InterPro:IPR002293)%2C Amino acid permease domain (InterPro:IPR004841)%3B BEST Arabidopsis thaliana protein match is: cationic amino acid transporter 4 (TAIR:AT3G03720.1)%3B Has 34191 Blast hits to 33870 proteins in 2358 species: Archae - 527%3B Bacteria - 27519%3B Metazoa - 1917%3B Fungi - 2586%3B Plants - 410%3B Viruses - 0%3B Other Eukaryotes - 1232 (source: NCBI BLink).; Dbxref=PMID:15377779, PMID:18775970, PMID:20736450, locus:2198861; locus_type=protein_coding
AT1G05940.4	chr1:001801997	0.0	C/1801997-1802260,1802357-1802533,1802646-1802870,1802942-1803118,1803198-1803607,1803693-1803942	AT1G05940.4 CDS AT1G05940 ID=AT1G05940.4; Parent=AT1G05940; Name=AT1G05940.4; Note=cationic amino acid transporter 9; symbol=CAT9; full_name=cationic amino acid transporter 9; curator_summary=Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters.; computational_description=cationic amino acid transporter 9 (CAT9)%3B FUNCTIONS IN: cationic amino acid transmembrane transporter activity%3B INVOLVED IN: amino acid transport%2C transport%2C transmembrane transport%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Cationic amino acid transporter (InterPro:IPR015606)%2C Amino acid/polyamine transporter I (InterPro:IPR002293)%2C Amino acid permease domain (InterPro:IPR004841)%3B BEST Arabidopsis thaliana protein match is: cationic amino acid transporter 4 (TAIR:AT3G03720.1)%3B Has 34191 Blast hits to 33870 proteins in 2358 species: Archae - 527%3B Bacteria - 27519%3B Metazoa - 1917%3B Fungi - 2586%3B Plants - 410%3B Viruses - 0%3B Other Eukaryotes - 1232 (source: NCBI BLink).; Dbxref=PMID:15377779, PMID:18775970, PMID:20736450, locus:2198861; locus_type=protein_coding
AT1G05950.1	chr1:001804573	0.0	C/1804573-1804724,1804816-1804882,1804952-1805106,1805187-1805253,1805369-1805584,1805667-1805879,1805964-1806117,1806233-1806343,1806538-1806685,1806763-1807198,1807307-1807471	AT1G05950.1 CDS AT1G05950 ID=AT1G05950.1; Parent=AT1G05950; Name=AT1G05950.1; Note=hypothetical protein; conf_class=4; computational_description=unknown protein%3B Has 50 Blast hits to 45 proteins in 14 species: Archae - 5%3B Bacteria - 0%3B Metazoa - 4%3B Fungi - 0%3B Plants - 34%3B Viruses - 0%3B Other Eukaryotes - 7 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:20736450, locus:2198871; locus_type=protein_coding
AT1G05950.3	chr1:001804715	0.0	C/1804715-1804882,1804952-1805106,1805187-1805253,1805369-1805584,1805667-1805879,1805964-1806117,1806233-1806343,1806538-1806685,1806763-1807198,1807307-1807471	AT1G05950.3 CDS AT1G05950 ID=AT1G05950.3; Parent=AT1G05950; Name=AT1G05950.3; Note=hypothetical protein; computational_description=unknown protein%3B Has 50 Blast hits to 45 proteins in 14 species: Archae - 5%3B Bacteria - 0%3B Metazoa - 4%3B Fungi - 0%3B Plants - 34%3B Viruses - 0%3B Other Eukaryotes - 7 (source: NCBI BLink).; Dbxref=PMID:20736450, locus:2198871; locus_type=protein_coding
AT1G05950.5	chr1:001804872	0.0	C/1804872-1804882,1804963-1805106,1805187-1805253,1805369-1805584,1805667-1805879,1805964-1806117,1806233-1806343,1806538-1806685,1806763-1807198,1807307-1807471	AT1G05950.5 CDS AT1G05950 ID=AT1G05950.5; Parent=AT1G05950; Name=AT1G05950.5; Note=hypothetical protein; computational_description=unknown protein%3B Has 50 Blast hits to 45 proteins in 14 species: Archae - 5%3B Bacteria - 0%3B Metazoa - 4%3B Fungi - 0%3B Plants - 34%3B Viruses - 0%3B Other Eukaryotes - 7 (source: NCBI BLink).; Dbxref=PMID:20736450, locus:2198871; locus_type=protein_coding
AT1G05950.2	chr1:001804931	0.0	C/1804931-1805106,1805187-1805253,1805369-1805584,1805667-1805879,1805964-1806117,1806233-1806343,1806538-1806685,1806763-1807198,1807307-1807471	AT1G05950.2 CDS AT1G05950 ID=AT1G05950.2; Parent=AT1G05950; Name=AT1G05950.2; Note=hypothetical protein; computational_description=unknown protein%3B Has 50 Blast hits to 45 proteins in 14 species: Archae - 5%3B Bacteria - 0%3B Metazoa - 4%3B Fungi - 0%3B Plants - 34%3B Viruses - 0%3B Other Eukaryotes - 7 (source: NCBI BLink).; Dbxref=PMID:20736450, locus:2198871; locus_type=protein_coding
AT1G05950.4	chr1:001804931	0.0	C/1804931-1805106,1805187-1805253,1805369-1805584,1805667-1805879,1805964-1806117,1806233-1806343,1806538-1806685,1806763-1807198,1807307-1807471	AT1G05950.4 CDS AT1G05950 ID=AT1G05950.4; Parent=AT1G05950; Name=AT1G05950.4; Note=hypothetical protein; computational_description=unknown protein%3B Has 50 Blast hits to 45 proteins in 14 species: Archae - 5%3B Bacteria - 0%3B Metazoa - 4%3B Fungi - 0%3B Plants - 34%3B Viruses - 0%3B Other Eukaryotes - 7 (source: NCBI BLink).; Dbxref=PMID:20736450, locus:2198871; locus_type=protein_coding
AT1G05960.1	chr1:001808478	0.0	C/1808478-1808636,1808736-1808936,1809019-1809153,1809222-1809362,1809506-1809700,1809813-1809940,1810506-1810581,1810872-1811021,1811163-1811516,1811608-1811757,1812450-1812739,1812833-1813029,1813134-1813288,1813386-1813433,1813927-1814055,1814144-1814258,1814447-1814562,1814659-1814733,1814926-1815060	AT1G05960.1 CDS AT1G05960 ID=AT1G05960.1; Parent=AT1G05960; Name=AT1G05960.1; Note=ARM repeat superfamily protein; conf_class=2; computational_description=ARM repeat superfamily protein%3B FUNCTIONS IN: binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024)%3B BEST Arabidopsis thaliana protein match is: Uncharacterized protein (TAIR:AT2G41830.1)%3B Has 401 Blast hits to 394 proteins in 143 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 142%3B Fungi - 117%3B Plants - 127%3B Viruses - 0%3B Other Eukaryotes - 9 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, locus:2198846; locus_type=protein_coding
AT1G05960.2	chr1:001808478	0.0	C/1808478-1808636,1808736-1808936,1809019-1809153,1809222-1809362,1809506-1809700,1809813-1809940,1810506-1810581,1810872-1811021,1811163-1811516,1811608-1811757,1812450-1812739,1812833-1813029,1813134-1813288,1813386-1813433,1813927-1814055,1814144-1814258,1814328-1814390,1814447-1814562,1814659-1814733,1814926-1815060	AT1G05960.2 CDS AT1G05960 ID=AT1G05960.2; Parent=AT1G05960; Name=AT1G05960.2; Note=ARM repeat superfamily protein; conf_class=6; computational_description=ARM repeat superfamily protein%3B FUNCTIONS IN: binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024)%3B BEST Arabidopsis thaliana protein match is: Uncharacterized protein (TAIR:AT2G41830.1)%3B Has 401 Blast hits to 394 proteins in 143 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 142%3B Fungi - 117%3B Plants - 127%3B Viruses - 0%3B Other Eukaryotes - 9 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:18775970, locus:2198846; locus_type=protein_coding
AT1G05960.3	chr1:001808478	0.0	C/1808478-1808636,1808736-1808936,1809019-1809153,1809222-1809362,1809506-1809700,1809813-1809940,1810506-1810581,1810872-1811021,1811163-1811516,1811608-1811757,1812450-1812739,1812833-1813029,1813134-1813288,1813386-1813433,1813927-1814055,1814144-1814258,1814447-1814562,1814659-1814733,1814926-1815060	AT1G05960.3 CDS AT1G05960 ID=AT1G05960.3; Parent=AT1G05960; Name=AT1G05960.3; Note=ARM repeat superfamily protein; Dbxref=PMID:18775970, locus:2198846; computational_description=ARM repeat superfamily protein%3B FUNCTIONS IN: binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024)%3B BEST Arabidopsis thaliana protein match is: Uncharacterized protein (TAIR:AT2G41830.1)%3B Has 401 Blast hits to 394 proteins in 143 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 142%3B Fungi - 117%3B Plants - 127%3B Viruses - 0%3B Other Eukaryotes - 9 (source: NCBI BLink).; locus_type=protein_coding
AT1G05960.4	chr1:001808478	0.0	C/1808478-1808636,1808736-1808936,1809019-1809153,1809222-1809362,1809506-1809700,1809813-1809940,1810506-1810581,1810872-1811021,1811163-1811516,1811608-1811757,1812450-1812739,1812833-1813029,1813134-1813288,1813386-1813433,1813927-1814055,1814144-1814258,1814447-1814562,1814659-1814733,1814926-1815060	AT1G05960.4 CDS AT1G05960 ID=AT1G05960.4; Parent=AT1G05960; Name=AT1G05960.4; Note=ARM repeat superfamily protein; Dbxref=PMID:18775970, locus:2198846; computational_description=ARM repeat superfamily protein%3B FUNCTIONS IN: binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024)%3B BEST Arabidopsis thaliana protein match is: Uncharacterized protein (TAIR:AT2G41830.1)%3B Has 401 Blast hits to 394 proteins in 143 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 142%3B Fungi - 117%3B Plants - 127%3B Viruses - 0%3B Other Eukaryotes - 9 (source: NCBI BLink).; locus_type=protein_coding
AT1G05970.1	chr1:001816253	0.0	C/1816253-1816402,1816545-1816991	AT1G05970.1 CDS AT1G05970 ID=AT1G05970.1; Parent=AT1G05970; Name=AT1G05970.1; Note=RNA-binding (RRM/RBD/RNP motifs) family protein; conf_class=2; computational_description=RNA-binding (RRM/RBD/RNP motifs) family protein%3B Has 58 Blast hits to 58 proteins in 17 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2%3B Fungi - 0%3B Plants - 56%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2198876; locus_type=protein_coding
AT1G05970.2	chr1:001816253	0.0	C/1816253-1816408,1816545-1816991	AT1G05970.2 CDS AT1G05970 ID=AT1G05970.2; Parent=AT1G05970; Name=AT1G05970.2; Note=RNA-binding (RRM/RBD/RNP motifs) family protein; conf_class=2; computational_description=RNA-binding (RRM/RBD/RNP motifs) family protein%3B Has 58 Blast hits to 58 proteins in 17 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2%3B Fungi - 0%3B Plants - 56%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2198876; locus_type=protein_coding
AT1G05980.1	chr1:001817400	0.0	W/1817400-1817471	AT1G05980.1 tRNA AT1G05980 ID=AT1G05980.1; Parent=AT1G05980; Note=tRNA-Thr; computational_description=tRNA-Thr (anticodon: TGT); Dbxref=PMID:8980477, PMID:23066098, PMID:8980477, locus:3692312; Name=AT1G05980.1; locus_type=pre_trna
AT1G05990.1	chr1:001818588	0.0	W/1818588-1819040	AT1G05990.1 CDS AT1G05990 ID=AT1G05990.1; Parent=AT1G05990; Name=AT1G05990.1; Note=EF hand calcium-binding protein family; conf_class=1; Alias=RHS1, ROOT HAIR SPECIFIC 1; computational_description=EF hand calcium-binding protein family%3B FUNCTIONS IN: calcium ion binding%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: root hair%3B CONTAINS InterPro DOMAIN/s: Parvalbumin (InterPro:IPR008080)%2C EF-Hand 1%2C calcium-binding site (InterPro:IPR018247)%2C EF-HAND 2 (InterPro:IPR018249)%2C EF-hand-like domain (InterPro:IPR011992)%2C Calcium-binding EF-hand (InterPro:IPR002048)%2C EF-hand (InterPro:IPR018248)%3B BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT2G43290.1)%3B Has 27146 Blast hits to 18777 proteins in 1639 species: Archae - 2%3B Bacteria - 228%3B Metazoa - 11784%3B Fungi - 5059%3B Plants - 5970%3B Viruses - 0%3B Other Eukaryotes - 4103 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12372144, PMID:15720654, PMID:15923328, PMID:16023399, PMID:19448035, PMID:20736450, locus:2198781; locus_type=protein_coding
AT1G06002.1	chr1:001820254	0.0	W/1820254-1821887	AT1G06002.1 antisense_lncRNA AT1G06002 ID=AT1G06002.1; Parent=AT1G06002; curator_summary=Potential natural antisense gene%2C locus overlaps with AT1G06000; Dbxref=locus:6530298132; Name=AT1G06002.1; description=Natural antisense transcript overlaps with AT1G06000; Note=Natural antisense transcript overlaps with AT1G06000; locus_type=antisense_long_noncoding_rna
AT1G06000.1	chr1:001820495	0.0	C/1820495-1821802	AT1G06000.1 CDS AT1G06000 ID=AT1G06000.1; Parent=AT1G06000; Name=AT1G06000.1; Note=UDP-Glycosyltransferase superfamily protein; curator_summary=encodes a flavonol-7-O-rhamnosyltransferase involved in the formation of rhamnosylated flavonols; conf_class=1; computational_description=UDP-Glycosyltransferase superfamily protein%3B CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213)%3B BEST Arabidopsis thaliana protein match is: UDP-glucosyl transferase 89B1 (TAIR:AT1G73880.1)%3B Has 5632 Blast hits to 5556 proteins in 323 species: Archae - 0%3B Bacteria - 151%3B Metazoa - 482%3B Fungi - 23%3B Plants - 4909%3B Viruses - 43%3B Other Eukaryotes - 24 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16299171, PMID:16330762, PMID:16829591, PMID:17314094, PMID:17478635, PMID:18650403, PMID:18757557, PMID:18805951, PMID:18793471, PMID:20736450, PMID:23549747, locus:2198791; locus_type=protein_coding
AT1G06010.1	chr1:001823347	0.0	W/1823347-1823410,1823498-1823670	AT1G06010.1 CDS AT1G06010 ID=AT1G06010.1; Parent=AT1G06010; Name=AT1G06010.1; Note=basic leucine zipper/W2 domain protein; conf_class=2; computational_description=unknown protein%3B Has 25 Blast hits to 25 proteins in 9 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 25%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2198806; locus_type=protein_coding
AT1G06020.1	chr1:001824548	0.0	W/1824548-1824949,1825314-1825646,1825725-1825841,1825916-1826101	AT1G06020.1 CDS AT1G06020 ID=AT1G06020.1; Parent=AT1G06020; Name=AT1G06020.1; Note=pfkB-like carbohydrate kinase family protein; conf_class=1; computational_description=pfkB-like carbohydrate kinase family protein%3B FUNCTIONS IN: kinase activity%2C ribokinase activity%3B INVOLVED IN: D-ribose metabolic process%2C acetate fermentation%2C sucrose biosynthetic process%2C sucrose catabolic process%2C using beta-fructofuranosidase%3B EXPRESSED IN: central cell%2C embryo%3B EXPRESSED DURING: C globular stage%3B CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611)%2C Ribokinase (InterPro:IPR002139)%2C Carbohydrate/puine kinase%2C PfkB%2C conserved site (InterPro:IPR002173)%3B BEST Arabidopsis thaliana protein match is: pfkB-like carbohydrate kinase family protein (TAIR:AT1G06030.1)%3B Has 19243 Blast hits to 19237 proteins in 2432 species: Archae - 396%3B Bacteria - 14376%3B Metazoa - 170%3B Fungi - 128%3B Plants - 499%3B Viruses - 0%3B Other Eukaryotes - 3674 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16299181, PMID:17915010, PMID:18710526, PMID:20226671, PMID:20736450, locus:2198821; locus_type=protein_coding
AT1G06030.1	chr1:001826880	0.0	W/1826880-1827284,1827374-1827706,1827798-1827914,1827996-1828130	AT1G06030.1 CDS AT1G06030 ID=AT1G06030.1; Parent=AT1G06030; Name=AT1G06030.1; Note=pfkB-like carbohydrate kinase family protein; conf_class=1; computational_description=pfkB-like carbohydrate kinase family protein%3B FUNCTIONS IN: kinase activity%2C ribokinase activity%3B INVOLVED IN: D-ribose metabolic process%2C acetate fermentation%2C sucrose biosynthetic process%2C sucrose catabolic process%2C using beta-fructofuranosidase%3B EXPRESSED IN: guard cell%3B CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611)%2C Ribokinase (InterPro:IPR002139)%2C Carbohydrate/puine kinase%2C PfkB%2C conserved site (InterPro:IPR002173)%3B BEST Arabidopsis thaliana protein match is: pfkB-like carbohydrate kinase family protein (TAIR:AT1G06020.1)%3B Has 18996 Blast hits to 18990 proteins in 2425 species: Archae - 390%3B Bacteria - 14287%3B Metazoa - 160%3B Fungi - 120%3B Plants - 469%3B Viruses - 0%3B Other Eukaryotes - 3570 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16776300, PMID:16998091, locus:2198831; locus_type=protein_coding
AT1G06040.1	chr1:001828662	0.0	C/1828662-1828904,1828987-1829307,1829477-1829659	AT1G06040.1 CDS AT1G06040 ID=AT1G06040.1; Parent=AT1G06040; Name=AT1G06040.1; Note=B-box zinc finger family protein; curator_summary=Encodes salt tolerance protein (STO) which confers salt tolerance to yeast cells. Fully complements calcineurin deficient yeast but does not encode a phosphoprotein phosphatase. Sequence has similarities to CONSTANS. STO co-localizes with COP1 and plays a role in light signaling.; conf_class=2; symbol=STO; Alias=BBX24, B-box domain protein 24; full_name=SALT TOLERANCE; computational_description=SALT TOLERANCE (STO)%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C B-box (InterPro:IPR000315)%3B BEST Arabidopsis thaliana protein match is: salt tolerance homologue (TAIR:AT2G31380.1)%3B Has 1912 Blast hits to 1325 proteins in 114 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 5%3B Fungi - 2%3B Plants - 1809%3B Viruses - 0%3B Other Eukaryotes - 96 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9679197, PMID:8662738, PMID:11018516, PMID:11118137, PMID:12909688, PMID:17516134, PMID:17586689, PMID:17561307, PMID:17541720, PMID:17605755, PMID:17965270, PMID:18441225, PMID:18643972, PMID:19210750, PMID:19363207, PMID:19455351, PMID:19492112, PMID:18540109, PMID:19161942, PMID:19571313, PMID:19704462, PMID:19704777, PMID:19941623, PMID:19941154, PMID:19920209, PMID:19880402, PMID:20040066, PMID:20351290, PMID:20360019, PMID:20492547, PMID:20457597, PMID:20801923, PMID:20822503, PMID:21097474, PMID:21043471, PMID:21258002, PMID:21509473, PMID:21620334, PMID:21617988, PMID:21685177, PMID:21638061, PMID:21832142, PMID:21979077, PMID:22301971, PMID:22410790, PMID:22382993, PMID:22771912, PMID:22973287, PMID:23052592, PMID:23185443, PMID:23353766, PMID:23299430, PMID:23299338, PMID:23425851, PMID:23503758, PMID:23624715, PMID:23649767, PMID:23733077, PMID:23864838, PMID:24377444, PMID:24498334, PMID:25656233, locus:2198841; locus_type=protein_coding
AT1G06040.2	chr1:001828957	0.0	C/1828957-1829307,1829477-1829659	AT1G06040.2 CDS AT1G06040 ID=AT1G06040.2; Parent=AT1G06040; Name=AT1G06040.2; Note=B-box zinc finger family protein; curator_summary=Encodes salt tolerance protein (STO) which confers salt tolerance to yeast cells. Fully complements calcineurin deficient yeast but does not encode a phosphoprotein phosphatase. Sequence has similarities to CONSTANS. STO co-localizes with COP1 and plays a role in light signaling.; conf_class=2; symbol=STO; Alias=BBX24, B-box domain protein 24; full_name=SALT TOLERANCE; computational_description=SALT TOLERANCE (STO)%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C B-box (InterPro:IPR000315)%3B BEST Arabidopsis thaliana protein match is: salt tolerance homologue (TAIR:AT2G31380.1)%3B Has 1912 Blast hits to 1325 proteins in 114 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 5%3B Fungi - 2%3B Plants - 1809%3B Viruses - 0%3B Other Eukaryotes - 96 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9679197, PMID:8662738, PMID:11018516, PMID:11118137, PMID:12909688, PMID:17516134, PMID:17586689, PMID:17561307, PMID:17541720, PMID:17605755, PMID:17965270, PMID:18441225, PMID:18643972, PMID:19210750, PMID:19363207, PMID:19455351, PMID:19492112, PMID:18540109, PMID:19161942, PMID:19571313, PMID:19704462, PMID:19704777, PMID:19941623, PMID:19941154, PMID:19920209, PMID:19880402, PMID:20040066, PMID:20351290, PMID:20360019, PMID:20492547, PMID:20457597, PMID:20801923, PMID:20822503, PMID:21097474, PMID:21043471, PMID:21258002, PMID:21509473, PMID:21620334, PMID:21617988, PMID:21685177, PMID:21638061, PMID:21832142, PMID:21979077, PMID:22301971, PMID:22410790, PMID:22382993, PMID:22771912, PMID:22973287, PMID:23052592, PMID:23185443, PMID:23353766, PMID:23299430, PMID:23299338, PMID:23425851, PMID:23503758, PMID:23624715, PMID:23649767, PMID:23733077, PMID:23864838, PMID:24377444, PMID:24498334, PMID:25656233, locus:2198841; locus_type=protein_coding
AT1G06045.1	chr1:001829522	0.0	W/1829522-1829688,1829766-1829865	AT1G06045.1 CDS AT1G06045 ID=AT1G06045.1; Parent=AT1G06045; Name=AT1G06045.1; Note=hypothetical protein; locus_type=protein_coding
AT1G06050.1	chr1:001830726	0.0	C/1830726-1831667	AT1G06050.1 CDS AT1G06050 ID=AT1G06050.1; Parent=AT1G06050; Name=AT1G06050.1; Note=ENHANCED DISEASE RESISTANCE-like protein (DUF1336); conf_class=2; computational_description=Protein of unknown function (DUF1336)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1336 (InterPro:IPR009769)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1336) (TAIR:AT5G10750.1)%3B Has 364 Blast hits to 356 proteins in 29 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1%3B Fungi - 0%3B Plants - 307%3B Viruses - 0%3B Other Eukaryotes - 56 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, locus:2198866; locus_type=protein_coding
AT1G06060.1	chr1:001833071	0.0	W/1833071-1833097,1833420-1833561,1833655-1833802,1833886-1833961,1834069-1834180,1834275-1834366,1834472-1834516	AT1G06060.1 CDS AT1G06060 ID=AT1G06060.1; Parent=AT1G06060; Name=AT1G06060.1; Note=LisH and RanBPM domains containing protein; conf_class=2; computational_description=LisH and RanBPM domains containing protein%3B CONTAINS InterPro DOMAIN/s: Ran binding protein%2C CRA domain (InterPro:IPR019589)%2C CTLH%2C C-terminal LisH motif (InterPro:IPR006595)%2C LisH dimerisation motif (InterPro:IPR006594)%2C Ran binding protein-like%2C CRA domain (InterPro:IPR013144)%3B BEST Arabidopsis thaliana protein match is: SPla/RYanodine receptor (SPRY) domain-containing protein (TAIR:AT1G35470.2)%3B Has 872 Blast hits to 770 proteins in 159 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 465%3B Fungi - 136%3B Plants - 208%3B Viruses - 0%3B Other Eukaryotes - 63 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18552200, PMID:18650403, PMID:18775970, locus:2198796; locus_type=protein_coding
AT1G06060.2	chr1:001833071	0.0	W/1833071-1833097,1833420-1833561,1833655-1833802,1833886-1833961,1834069-1834180,1834275-1834405	AT1G06060.2 CDS AT1G06060 ID=AT1G06060.2; Parent=AT1G06060; Name=AT1G06060.2; Note=LisH and RanBPM domains containing protein; computational_description=LisH and RanBPM domains containing protein%3B CONTAINS InterPro DOMAIN/s: Ran binding protein%2C CRA domain (InterPro:IPR019589)%2C CTLH%2C C-terminal LisH motif (InterPro:IPR006595)%2C LisH dimerisation motif (InterPro:IPR006594)%2C Ran binding protein-like%2C CRA domain (InterPro:IPR013144)%3B BEST Arabidopsis thaliana protein match is: SPla/RYanodine receptor (SPRY) domain-containing protein (TAIR:AT1G35470.2)%3B Has 872 Blast hits to 770 proteins in 159 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 465%3B Fungi - 136%3B Plants - 208%3B Viruses - 0%3B Other Eukaryotes - 63 (source: NCBI BLink).; Dbxref=PMID:18552200, PMID:18650403, PMID:18775970, locus:2198796; locus_type=protein_coding
AT1G06070.1	chr1:001835201	0.0	C/1835201-1835607,1835945-1836029,1836114-1836246,1836470-1837116	AT1G06070.1 CDS AT1G06070 ID=AT1G06070.1; Parent=AT1G06070; Name=AT1G06070.1; Note=Basic-leucine zipper (bZIP) transcription factor family protein; conf_class=2; Alias=bZIP69, basic leucine-zipper 69; computational_description=Basic-leucine zipper (bZIP) transcription factor family protein%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827)%2C bZIP transcription factor%2C bZIP-1 (InterPro:IPR011616)%3B BEST Arabidopsis thaliana protein match is: Basic-leucine zipper (bZIP) transcription factor family protein (TAIR:AT2G31370.5)%3B Has 39307 Blast hits to 17494 proteins in 873 species: Archae - 8%3B Bacteria - 1528%3B Metazoa - 14762%3B Fungi - 4294%3B Plants - 2852%3B Viruses - 384%3B Other Eukaryotes - 15479 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:11906833, PMID:14576160, PMID:15226410, PMID:16731568, PMID:16934950, PMID:25093810, locus:2198856; locus_type=protein_coding
AT1G04443.1	chr1:001839483	0.0	C/1839483-1839729	AT1G04443.1 lnc_RNA AT1G04443 ID=AT1G04443.1; Parent=AT1G04443; Name=AT1G04443.1; locus_type=long_noncoding_rna
AT1TE06030	chr1:001840654	0.0	C/1840654-1841049	AT1TE06030 transposable_element AT1TE06030 ID=AT1TE06030; Name=AT1TE06030; Alias=BRODYAGA2
AT1G06080.1	chr1:001843661	0.0	W/1843661-1843990,1844629-1844769,1844846-1844986,1845102-1845208,1845895-1846093	AT1G06080.1 CDS AT1G06080 ID=AT1G06080.1; Parent=AT1G06080; Name=AT1G06080.1; Note=delta 9 desaturase 1; curator_summary=Encodes a protein homologous to delta 9 acyl-lipid desaturases of cyanobacteria and acyl-CoA desaturases of yeast and mammals. expression down-regulated by cold temperature. It is involved in the desaturation of VLCFAs to make monounsaturated VLCFAs.; conf_class=1; symbol=ADS1; Alias=AtADS1; full_name=delta 9 desaturase 1; computational_description=delta 9 desaturase 1 (ADS1)%3B FUNCTIONS IN: oxidoreductase activity%2C oxidoreductase activity%2C acting on paired donors%2C with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water%3B INVOLVED IN: oxidation reduction%2C lipid metabolic process%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Fatty acid desaturase%2C type 1%2C core (InterPro:IPR015876)%2C Fatty acid desaturase%2C type 1 (InterPro:IPR005804)%3B BEST Arabidopsis thaliana protein match is: 16:0delta9 desaturase 2 (TAIR:AT2G31360.1)%3B Has 3455 Blast hits to 3455 proteins in 832 species: Archae - 0%3B Bacteria - 1551%3B Metazoa - 796%3B Fungi - 234%3B Plants - 106%3B Viruses - 4%3B Other Eukaryotes - 764 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:9559566, PMID:15240892, PMID:15579662, PMID:20736450, PMID:22203212, PMID:23175755, PMID:23505340, locus:2198786; locus_type=protein_coding
AT1G06080.2	chr1:001843661	0.0	W/1843661-1843990,1844629-1844769,1844846-1845058	AT1G06080.2 CDS AT1G06080 ID=AT1G06080.2; Parent=AT1G06080; Name=AT1G06080.2; Note=delta 9 desaturase 1; symbol=ADS1; Alias=AtADS1; full_name=delta 9 desaturase 1; curator_summary=Encodes a protein homologous to delta 9 acyl-lipid desaturases of cyanobacteria and acyl-CoA desaturases of yeast and mammals. expression down-regulated by cold temperature. It is involved in the desaturation of VLCFAs to make monounsaturated VLCFAs.; computational_description=delta 9 desaturase 1 (ADS1)%3B FUNCTIONS IN: oxidoreductase activity%2C oxidoreductase activity%2C acting on paired donors%2C with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water%3B INVOLVED IN: oxidation reduction%2C lipid metabolic process%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Fatty acid desaturase%2C type 1%2C core (InterPro:IPR015876)%2C Fatty acid desaturase%2C type 1 (InterPro:IPR005804)%3B BEST Arabidopsis thaliana protein match is: 16:0delta9 desaturase 2 (TAIR:AT2G31360.1)%3B Has 3455 Blast hits to 3455 proteins in 832 species: Archae - 0%3B Bacteria - 1551%3B Metazoa - 796%3B Fungi - 234%3B Plants - 106%3B Viruses - 4%3B Other Eukaryotes - 764 (source: NCBI BLink).; Dbxref=PMID:9559566, PMID:15240892, PMID:15579662, PMID:20736450, PMID:22203212, PMID:23175755, PMID:23505340, locus:2198786; locus_type=protein_coding
AT1G06090.1	chr1:001847921	0.0	W/1847921-1848232,1848316-1848456,1848589-1848729,1849109-1849215,1849302-1849500	AT1G06090.1 CDS AT1G06090 ID=AT1G06090.1; Parent=AT1G06090; Name=AT1G06090.1; Note=Fatty acid desaturase family protein; conf_class=2; computational_description=Fatty acid desaturase family protein%3B FUNCTIONS IN: oxidoreductase activity%2C oxidoreductase activity%2C acting on paired donors%2C with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water%3B INVOLVED IN: oxidation reduction%2C lipid metabolic process%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Fatty acid desaturase%2C type 1%2C core (InterPro:IPR015876)%2C Fatty acid desaturase%2C type 1 (InterPro:IPR005804)%3B BEST Arabidopsis thaliana protein match is: Fatty acid desaturase family protein (TAIR:AT1G06120.1)%3B Has 3429 Blast hits to 3429 proteins in 832 species: Archae - 0%3B Bacteria - 1555%3B Metazoa - 791%3B Fungi - 234%3B Plants - 106%3B Viruses - 4%3B Other Eukaryotes - 739 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:23175755, PMID:23505340, locus:2198801; locus_type=protein_coding
AT1TE06060	chr1:001850786	0.0	W/1850786-1851269	AT1TE06060 transposable_element AT1TE06060 ID=AT1TE06060; Name=AT1TE06060; Alias=ATREP19
AT1G06100.1	chr1:001851530	0.0	W/1851530-1851841,1851957-1852097,1852223-1852363,1852612-1852718,1852821-1853019	AT1G06100.1 CDS AT1G06100 ID=AT1G06100.1; Parent=AT1G06100; Name=AT1G06100.1; Note=Fatty acid desaturase family protein; conf_class=1; computational_description=Fatty acid desaturase family protein%3B FUNCTIONS IN: oxidoreductase activity%2C oxidoreductase activity%2C acting on paired donors%2C with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water%3B INVOLVED IN: oxidation reduction%2C lipid metabolic process%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Fatty acid desaturase%2C type 1%2C core (InterPro:IPR015876)%2C Fatty acid desaturase%2C type 1 (InterPro:IPR005804)%3B BEST Arabidopsis thaliana protein match is: Fatty acid desaturase family protein (TAIR:AT1G06090.1)%3B Has 3412 Blast hits to 3412 proteins in 822 species: Archae - 0%3B Bacteria - 1532%3B Metazoa - 796%3B Fungi - 236%3B Plants - 106%3B Viruses - 4%3B Other Eukaryotes - 738 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:18805951, PMID:22487254, PMID:23175755, PMID:23505340, locus:2198816; locus_type=protein_coding
AT1G06110.1	chr1:001853237	0.0	C/1853237-1853315,1853405-1853511,1853615-1853833,1853915-1854616,1854735-1854938	AT1G06110.1 CDS AT1G06110 ID=AT1G06110.1; Parent=AT1G06110; Name=AT1G06110.1; Note=SKP1/ASK-interacting protein 16; conf_class=2; symbol=SKIP16; full_name=SKP1/ASK-interacting protein 16; computational_description=SKP1/ASK-interacting protein 16 (SKIP16)%3B CONTAINS InterPro DOMAIN/s: ApaG (InterPro:IPR007474)%3B Has 2063 Blast hits to 2061 proteins in 779 species: Archae - 0%3B Bacteria - 1378%3B Metazoa - 194%3B Fungi - 63%3B Plants - 89%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12795696, PMID:17346352, PMID:18775970, locus:2198826; locus_type=protein_coding
AT1G06110.2	chr1:001853609	0.0	C/1853609-1853833,1853915-1854616,1854735-1854938	AT1G06110.2 CDS AT1G06110 ID=AT1G06110.2; Parent=AT1G06110; Name=AT1G06110.2; Note=SKP1/ASK-interacting protein 16; symbol=SKIP16; full_name=SKP1/ASK-interacting protein 16; computational_description=SKP1/ASK-interacting protein 16 (SKIP16)%3B CONTAINS InterPro DOMAIN/s: ApaG (InterPro:IPR007474)%3B Has 2063 Blast hits to 2061 proteins in 779 species: Archae - 0%3B Bacteria - 1378%3B Metazoa - 194%3B Fungi - 63%3B Plants - 89%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).; Dbxref=PMID:12795696, PMID:17346352, PMID:18775970, locus:2198826; locus_type=protein_coding
AT1G06110.3	chr1:001853719	0.0	C/1853719-1853733,1853915-1854616,1854735-1854938	AT1G06110.3 CDS AT1G06110 ID=AT1G06110.3; Parent=AT1G06110; Name=AT1G06110.3; Note=SKP1/ASK-interacting protein 16; symbol=SKIP16; full_name=SKP1/ASK-interacting protein 16; computational_description=SKP1/ASK-interacting protein 16 (SKIP16)%3B CONTAINS InterPro DOMAIN/s: ApaG (InterPro:IPR007474)%3B Has 2063 Blast hits to 2061 proteins in 779 species: Archae - 0%3B Bacteria - 1378%3B Metazoa - 194%3B Fungi - 63%3B Plants - 89%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).; Dbxref=PMID:12795696, PMID:17346352, PMID:18775970, locus:2198826; locus_type=protein_coding
AT1G06120.1	chr1:001855963	0.0	W/1855963-1856274,1856355-1856495,1856623-1856763,1857125-1857231,1857318-1857516	AT1G06120.1 CDS AT1G06120 ID=AT1G06120.1; Parent=AT1G06120; Name=AT1G06120.1; Note=Fatty acid desaturase family protein; conf_class=1; computational_description=Fatty acid desaturase family protein%3B FUNCTIONS IN: oxidoreductase activity%2C oxidoreductase activity%2C acting on paired donors%2C with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water%3B INVOLVED IN: oxidation reduction%2C lipid metabolic process%3B CONTAINS InterPro DOMAIN/s: Fatty acid desaturase%2C type 1%2C core (InterPro:IPR015876)%2C Fatty acid desaturase%2C type 1 (InterPro:IPR005804)%3B BEST Arabidopsis thaliana protein match is: Fatty acid desaturase family protein (TAIR:AT1G06090.1)%3B Has 3427 Blast hits to 3427 proteins in 832 species: Archae - 0%3B Bacteria - 1554%3B Metazoa - 794%3B Fungi - 234%3B Plants - 106%3B Viruses - 4%3B Other Eukaryotes - 735 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16460663, PMID:22487254, PMID:23175755, PMID:23505340, locus:2198836; locus_type=protein_coding
AT1G06130.1	chr1:001858034	0.0	C/1858034-1858186,1858334-1858432,1858518-1858592,1858693-1858793,1859329-1859452,1859561-1859764,1859980-1860165,1860587-1860640	AT1G06130.1 CDS AT1G06130 ID=AT1G06130.1; Parent=AT1G06130; Name=AT1G06130.1; Note=glyoxalase 2-4; conf_class=2; symbol=GLX2-4; full_name=glyoxalase 2-4; computational_description=glyoxalase 2-4 (GLX2-4)%3B FUNCTIONS IN: hydrolase activity%2C zinc ion binding%2C hydroxyacylglutathione hydrolase activity%3B INVOLVED IN: methylglyoxal catabolic process to D-lactate%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Beta-lactamase-like (InterPro:IPR001279)%2C Hydroxyacylglutathione hydrolase (InterPro:IPR017782)%3B BEST Arabidopsis thaliana protein match is: glyoxalase 2-5 (TAIR:AT2G31350.1)%3B Has 15456 Blast hits to 15455 proteins in 2500 species: Archae - 395%3B Bacteria - 9969%3B Metazoa - 478%3B Fungi - 329%3B Plants - 213%3B Viruses - 0%3B Other Eukaryotes - 4072 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15489341, PMID:21213008, locus:2198851; locus_type=protein_coding
AT1G06130.2	chr1:001858034	0.0	C/1858034-1858186,1858334-1858432,1858518-1858592,1858693-1858793,1859329-1859452,1859561-1859764,1859980-1860162,1860587-1860640	AT1G06130.2 CDS AT1G06130 ID=AT1G06130.2; Parent=AT1G06130; Name=AT1G06130.2; Note=glyoxalase 2-4; conf_class=2; symbol=GLX2-4; full_name=glyoxalase 2-4; computational_description=glyoxalase 2-4 (GLX2-4)%3B FUNCTIONS IN: hydrolase activity%2C zinc ion binding%2C hydroxyacylglutathione hydrolase activity%3B INVOLVED IN: methylglyoxal catabolic process to D-lactate%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Beta-lactamase-like (InterPro:IPR001279)%2C Hydroxyacylglutathione hydrolase (InterPro:IPR017782)%3B BEST Arabidopsis thaliana protein match is: glyoxalase 2-5 (TAIR:AT2G31350.1)%3B Has 15456 Blast hits to 15455 proteins in 2500 species: Archae - 395%3B Bacteria - 9969%3B Metazoa - 478%3B Fungi - 329%3B Plants - 213%3B Viruses - 0%3B Other Eukaryotes - 4072 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15489341, PMID:21213008, locus:2198851; locus_type=protein_coding
AT1G06135.1	chr1:001862307	0.0	W/1862307-1862516	AT1G06135.1 CDS AT1G06135 ID=AT1G06135.1; Parent=AT1G06135; Name=AT1G06135.1; Note=transmembrane protein; conf_class=1; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31345.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16500993, locus:1006230764; locus_type=protein_coding
AT1G06137.1	chr1:001863544	0.0	C/1863544-1863750	AT1G06137.1 CDS AT1G06137 ID=AT1G06137.1; Parent=AT1G06137; Name=AT1G06137.1; Note=transmembrane protein; conf_class=10; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06135.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=locus:4515102501; locus_type=protein_coding
AT1G06140.1	chr1:001864796	0.0	W/1864796-1866472	AT1G06140.1 CDS AT1G06140 ID=AT1G06140.1; Parent=AT1G06140; Name=AT1G06140.1; Note=Pentatricopeptide repeat (PPR) superfamily protein; curator_summary=Encodes MEF3 (mitochondrial editing factor 3)%2C a PPR (pentatricopeptide repeat) protein of the E domain subclass. Functions in mitochondrial RNA editing.; conf_class=1; symbol=MEF3; full_name=mitochondrial editing factor 3; computational_description=Pentatricopeptide repeat (PPR) superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G33990.1)%3B Has 38916 Blast hits to 13813 proteins in 232 species: Archae - 0%3B Bacteria - 13%3B Metazoa - 106%3B Fungi - 93%3B Plants - 38173%3B Viruses - 0%3B Other Eukaryotes - 531 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:20736450, PMID:22186180, locus:2198811; locus_type=protein_coding
AT1G06143.1	chr1:001867129	0.0	C/1867129-1868862	AT1G06143.1 CDS AT1G06143 ID=AT1G06143.1; Parent=AT1G06143; Name=AT1G06143.1; Note=basic helix loop helix DNA-binding superfamily protein; locus_type=protein_coding
AT1G06150.1	chr1:001869228	0.0	C/1869228-1869311,1869599-1869724,1869863-1870003,1870157-1870258,1870367-1871575,1871667-1871786,1871914-1871973,1872226-1872267,1872350-1872431,1872745-1872888,1873100-1873194	AT1G06150.1 CDS AT1G06150 ID=AT1G06150.1; Parent=AT1G06150; Name=AT1G06150.1; Note=basic helix loop helix (bHLH) DNA-binding superfamily protein; conf_class=4; symbol=EMB1444; Alias=LHL1, LONESOME HIGHWAY LIKE 1; full_name=EMBRYO DEFECTIVE 1444; computational_description=EMBRYO DEFECTIVE 1444 (EMB1444)%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: nucleus%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%2C Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: conserved peptide upstream open reading frame 7 (TAIR:AT2G31280.1)%3B Has 563 Blast hits to 411 proteins in 68 species: Archae - 0%3B Bacteria - 54%3B Metazoa - 32%3B Fungi - 13%3B Plants - 398%3B Viruses - 0%3B Other Eukaryotes - 66 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:11118137, PMID:15269332, PMID:17626058, PMID:17663791, PMID:23359424, locus:2198776; locus_type=protein_coding
AT1G06150.2	chr1:001869228	0.0	C/1869228-1869311,1869599-1869724,1869863-1870009,1870157-1870258,1870367-1871575,1871667-1871786,1871914-1871973,1872226-1872267,1872350-1872431,1872745-1872888,1873100-1873194	AT1G06150.2 CDS AT1G06150 ID=AT1G06150.2; Parent=AT1G06150; Name=AT1G06150.2; Note=basic helix loop helix (bHLH) DNA-binding superfamily protein; conf_class=4; symbol=EMB1444; Alias=LHL1, LONESOME HIGHWAY LIKE 1; full_name=EMBRYO DEFECTIVE 1444; computational_description=EMBRYO DEFECTIVE 1444 (EMB1444)%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: nucleus%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%2C Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: conserved peptide upstream open reading frame 7 (TAIR:AT2G31280.1)%3B Has 563 Blast hits to 411 proteins in 68 species: Archae - 0%3B Bacteria - 54%3B Metazoa - 32%3B Fungi - 13%3B Plants - 398%3B Viruses - 0%3B Other Eukaryotes - 66 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:11118137, PMID:15269332, PMID:17626058, PMID:17663791, PMID:23359424, locus:2198776; locus_type=protein_coding
AT1G06150.uORF1	chr1:001873360	0.0	C/1873360-1873464	AT1G06150.uORF1 uORF AT1G06150 ID=AT1G06150.uORF1; Derives_from=AT1G06150; Name=AT1G06150.uORF1; Note=basic helix loop helix (bHLH) DNA-binding superfamily protein; symbol=EMB1444; Alias=LHL1, LONESOME HIGHWAY LIKE 1; full_name=EMBRYO DEFECTIVE 1444; computational_description=EMBRYO DEFECTIVE 1444 (EMB1444)%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: nucleus%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%2C Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: conserved peptide upstream open reading frame 7 (TAIR:AT2G31280.1)%3B Has 563 Blast hits to 411 proteins in 68 species: Archae - 0%3B Bacteria - 54%3B Metazoa - 32%3B Fungi - 13%3B Plants - 398%3B Viruses - 0%3B Other Eukaryotes - 66 (source: NCBI BLink).; Dbxref=PMID:11118137, PMID:15269332, PMID:17626058, PMID:17663791, PMID:23359424, locus:2198776; locus_type=protein_coding
AT1G06148.2	chr1:001875301	0.0	C/1875301-1875328,1876840-1876955,1877043-1877150	AT1G06148.2 CDS AT1G06148 ID=AT1G06148.2; Parent=AT1G06148; Name=AT1G06148.2; Note=hypothetical protein; curator_summary=Unknown gene; conf_class=1; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B Has 5 Blast hits to 5 proteins in 1 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 5%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:4010713415; locus_type=protein_coding
AT1TE06140	chr1:001876438	0.0	C/1876438-1876508	AT1TE06140 transposable_element AT1TE06140 ID=AT1TE06140; Name=AT1TE06140; Alias=ARNOLD3
AT1G06148.1	chr1:001876836	0.0	C/1876836-1876955,1877043-1877150	AT1G06148.1 CDS AT1G06148 ID=AT1G06148.1; Parent=AT1G06148; Name=AT1G06148.1; Note=hypothetical protein; curator_summary=Unknown gene; conf_class=1; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B Has 5 Blast hits to 5 proteins in 1 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 5%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:4010713415; locus_type=protein_coding
AT1G06160.1	chr1:001883046	0.0	W/1883046-1883780	AT1G06160.1 CDS AT1G06160 ID=AT1G06160.1; Parent=AT1G06160; Name=AT1G06160.1; Note=octadecanoid-responsive AP2/ERF 59; curator_summary=encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1%2C ATERF-2%2C AND ATERF-5.; conf_class=1; symbol=ORA59; full_name=octadecanoid-responsive Arabidopsis AP2/ERF 59; computational_description=octadecanoid-responsive Arabidopsis AP2/ERF 59 (ORA59)%3B CONTAINS InterPro DOMAIN/s: DNA-binding%2C integrase-type (InterPro:IPR016177)%2C Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (InterPro:IPR001471)%3B BEST Arabidopsis thaliana protein match is: ethylene-responsive element binding factor 15 (TAIR:AT2G31230.1)%3B Has 6527 Blast hits to 6261 proteins in 388 species: Archae - 0%3B Bacteria - 36%3B Metazoa - 435%3B Fungi - 42%3B Plants - 5810%3B Viruses - 4%3B Other Eukaryotes - 200 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:10715325, PMID:9687012, PMID:11118137, PMID:11950980, PMID:16183832, PMID:16553894, PMID:16901781, PMID:17587374, PMID:17616737, PMID:18467450, PMID:18452589, PMID:19832945, PMID:19796781, PMID:20064062, PMID:21246258, PMID:21309981, PMID:22207719, PMID:22645537, PMID:22714923, PMID:22822211, PMID:23630530, PMID:24377444, PMID:23435661, locus:2038500; locus_type=protein_coding
AT1G06170.1	chr1:001885146	0.0	C/1885146-1885268,1885341-1885748,1885833-1886564	AT1G06170.1 CDS AT1G06170 ID=AT1G06170.1; Parent=AT1G06170; Name=AT1G06170.1; Note=basic helix-loop-helix (bHLH) DNA-binding superfamily protein; conf_class=1; computational_description=basic helix-loop-helix (bHLH) DNA-binding superfamily protein%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 6 plant structures%3B EXPRESSED DURING: 4 anthesis%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G31220.1)%3B Has 1258 Blast hits to 1258 proteins in 98 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 4%3B Fungi - 0%3B Plants - 1252%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11118137, PMID:12679534, PMID:12897250, PMID:14600211, PMID:16831835, PMID:20118226, locus:2038510; locus_type=protein_coding
AT1G06170.2	chr1:001885146	0.0	C/1885146-1885268,1885341-1885748,1885833-1886564	AT1G06170.2 CDS AT1G06170 ID=AT1G06170.2; Parent=AT1G06170; Name=AT1G06170.2; Note=basic helix-loop-helix (bHLH) DNA-binding superfamily protein; conf_class=4; computational_description=basic helix-loop-helix (bHLH) DNA-binding superfamily protein%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 6 plant structures%3B EXPRESSED DURING: 4 anthesis%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G31220.1)%3B Has 1258 Blast hits to 1258 proteins in 98 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 4%3B Fungi - 0%3B Plants - 1252%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:11118137, PMID:12679534, PMID:12897250, PMID:14600211, PMID:16831835, PMID:20118226, locus:2038510; locus_type=protein_coding
AT1G04447.1	chr1:001887404	0.0	W/1887404-1887728	AT1G04447.1 lnc_RNA AT1G04447 ID=AT1G04447.1; Parent=AT1G04447; Name=AT1G04447.1; locus_type=long_noncoding_rna
AT1G06180.1	chr1:001889510	0.0	W/1889510-1889642,1889797-1889926,1890612-1891089	AT1G06180.1 CDS AT1G06180 ID=AT1G06180.1; Parent=AT1G06180; Name=AT1G06180.1; Note=myb domain protein 13; curator_summary=member of MYB3R- and R2R3- type MYB- encoding genes; conf_class=4; symbol=MYB13; Alias=ATMYB13, myb domain protein 13, ATMYBLFGN; full_name=myb domain protein 13; computational_description=myb domain protein 13 (MYB13)%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%2C Homeodomain-related (InterPro:IPR012287)%2C Myb transcription factor (InterPro:IPR015495)%3B BEST Arabidopsis thaliana protein match is: myb domain protein 14 (TAIR:AT2G31180.1)%3B Has 8947 Blast hits to 8242 proteins in 510 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 809%3B Fungi - 464%3B Plants - 5950%3B Viruses - 6%3B Other Eukaryotes - 1718 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:9839469, PMID:9681014, PMID:11118137, PMID:11597504, PMID:14681436, PMID:16463103, PMID:16829591, PMID:16861809, PMID:16925600, PMID:16920880, PMID:17316173, PMID:17397551, PMID:17478635, PMID:18650403, PMID:24377444, locus:2038520; locus_type=protein_coding
AT1G06190.1	chr1:001892467	0.0	C/1892467-1893626,1894033-1894078	AT1G06190.1 CDS AT1G06190 ID=AT1G06190.1; Parent=AT1G06190; Name=AT1G06190.1; Note=Rho termination factor; curator_summary=Encodes a novel ribonucleic acid-binding protein that interacts with the endonuclease RNase E and supports its function in processing plastid ribonucleic acids.; conf_class=2; symbol=RHON1; full_name=Rho-N 1; computational_description=Rho termination factor%3B FUNCTIONS IN: transcription termination factor activity%2C ATPase activity%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism%2C ATP binding%3B INVOLVED IN: transcription termination%2C ATP biosynthetic process%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Rho termination factor%2C N-terminal (InterPro:IPR011112)%2C ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757)%3B BEST Arabidopsis thaliana protein match is: ATP binding%3BATPases%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism (TAIR:AT2G31150.1)%3B Has 1888 Blast hits to 1636 proteins in 313 species: Archae - 6%3B Bacteria - 275%3B Metazoa - 547%3B Fungi - 247%3B Plants - 133%3B Viruses - 50%3B Other Eukaryotes - 630 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18650403, PMID:20733066, PMID:21365755, PMID:22735703, PMID:25480370, locus:2038560; locus_type=protein_coding
AT1G06190.3	chr1:001892467	0.0	C/1892467-1893366	AT1G06190.3 CDS AT1G06190 ID=AT1G06190.3; Parent=AT1G06190; Name=AT1G06190.3; Note=Rho termination factor; symbol=RHON1; full_name=Rho-N 1; curator_summary=Encodes a novel ribonucleic acid-binding protein that interacts with the endonuclease RNase E and supports its function in processing plastid ribonucleic acids.; computational_description=Rho termination factor%3B FUNCTIONS IN: transcription termination factor activity%2C ATPase activity%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism%2C ATP binding%3B INVOLVED IN: transcription termination%2C ATP biosynthetic process%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Rho termination factor%2C N-terminal (InterPro:IPR011112)%2C ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757)%3B BEST Arabidopsis thaliana protein match is: ATP binding%3BATPases%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism (TAIR:AT2G31150.1)%3B Has 1888 Blast hits to 1636 proteins in 313 species: Archae - 6%3B Bacteria - 275%3B Metazoa - 547%3B Fungi - 247%3B Plants - 133%3B Viruses - 50%3B Other Eukaryotes - 630 (source: NCBI BLink).; Dbxref=PMID:18650403, PMID:20733066, PMID:21365755, PMID:22735703, PMID:25480370, locus:2038560; locus_type=protein_coding
AT1G06190.4	chr1:001892467	0.0	C/1892467-1893366	AT1G06190.4 CDS AT1G06190 ID=AT1G06190.4; Parent=AT1G06190; Name=AT1G06190.4; Note=Rho termination factor; symbol=RHON1; full_name=Rho-N 1; curator_summary=Encodes a novel ribonucleic acid-binding protein that interacts with the endonuclease RNase E and supports its function in processing plastid ribonucleic acids.; computational_description=Rho termination factor%3B FUNCTIONS IN: transcription termination factor activity%2C ATPase activity%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism%2C ATP binding%3B INVOLVED IN: transcription termination%2C ATP biosynthetic process%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Rho termination factor%2C N-terminal (InterPro:IPR011112)%2C ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757)%3B BEST Arabidopsis thaliana protein match is: ATP binding%3BATPases%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism (TAIR:AT2G31150.1)%3B Has 1888 Blast hits to 1636 proteins in 313 species: Archae - 6%3B Bacteria - 275%3B Metazoa - 547%3B Fungi - 247%3B Plants - 133%3B Viruses - 50%3B Other Eukaryotes - 630 (source: NCBI BLink).; Dbxref=PMID:18650403, PMID:20733066, PMID:21365755, PMID:22735703, PMID:25480370, locus:2038560; locus_type=protein_coding
AT1G06190.5	chr1:001892467	0.0	C/1892467-1893681	AT1G06190.5 CDS AT1G06190 ID=AT1G06190.5; Parent=AT1G06190; Name=AT1G06190.5; Note=Rho termination factor; symbol=RHON1; full_name=Rho-N 1; curator_summary=Encodes a novel ribonucleic acid-binding protein that interacts with the endonuclease RNase E and supports its function in processing plastid ribonucleic acids.; computational_description=Rho termination factor%3B FUNCTIONS IN: transcription termination factor activity%2C ATPase activity%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism%2C ATP binding%3B INVOLVED IN: transcription termination%2C ATP biosynthetic process%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Rho termination factor%2C N-terminal (InterPro:IPR011112)%2C ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757)%3B BEST Arabidopsis thaliana protein match is: ATP binding%3BATPases%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism (TAIR:AT2G31150.1)%3B Has 1888 Blast hits to 1636 proteins in 313 species: Archae - 6%3B Bacteria - 275%3B Metazoa - 547%3B Fungi - 247%3B Plants - 133%3B Viruses - 50%3B Other Eukaryotes - 630 (source: NCBI BLink).; Dbxref=PMID:18650403, PMID:20733066, PMID:21365755, PMID:22735703, PMID:25480370, locus:2038560; locus_type=protein_coding
AT1G06190.2	chr1:001892589	0.0	C/1892589-1892640,1892846-1893626,1894033-1894078	AT1G06190.2 CDS AT1G06190 ID=AT1G06190.2; Parent=AT1G06190; Name=AT1G06190.2; Note=Rho termination factor; curator_summary=Encodes a novel ribonucleic acid-binding protein that interacts with the endonuclease RNase E and supports its function in processing plastid ribonucleic acids.; conf_class=2; symbol=RHON1; full_name=Rho-N 1; computational_description=Rho termination factor%3B FUNCTIONS IN: transcription termination factor activity%2C ATPase activity%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism%2C ATP binding%3B INVOLVED IN: transcription termination%2C ATP biosynthetic process%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Rho termination factor%2C N-terminal (InterPro:IPR011112)%2C ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757)%3B BEST Arabidopsis thaliana protein match is: ATP binding%3BATPases%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism (TAIR:AT2G31150.1)%3B Has 1888 Blast hits to 1636 proteins in 313 species: Archae - 6%3B Bacteria - 275%3B Metazoa - 547%3B Fungi - 247%3B Plants - 133%3B Viruses - 50%3B Other Eukaryotes - 630 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18650403, PMID:20733066, PMID:21365755, PMID:22735703, PMID:25480370, locus:2038560; locus_type=protein_coding
AT1G06200.1	chr1:001894604	0.0	C/1894604-1894688,1894787-1894893,1894991-1895174,1895762-1895934,1896781-1896852	AT1G06200.1 CDS AT1G06200 ID=AT1G06200.1; Parent=AT1G06200; Name=AT1G06200.1; Note=Peptidase S24/S26A/S26B/S26C family protein; conf_class=2; computational_description=Peptidase S24/S26A/S26B/S26C family protein%3B CONTAINS InterPro DOMAIN/s: Peptidase S24/S26A/S26B/S26C%2C beta-ribbon domain (InterPro:IPR011056)%2C Peptidase S24/S26A/S26B/S26C (InterPro:IPR015927)%3B BEST Arabidopsis thaliana protein match is: Peptidase S24/S26A/S26B/S26C family protein (TAIR:AT2G31140.1)%3B Has 259 Blast hits to 259 proteins in 81 species: Archae - 0%3B Bacteria - 8%3B Metazoa - 68%3B Fungi - 34%3B Plants - 130%3B Viruses - 0%3B Other Eukaryotes - 19 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2038535; locus_type=protein_coding
AT1G06200.2	chr1:001894604	0.0	C/1894604-1894688,1894787-1894893,1894991-1895174,1895762-1895934,1896781-1896963	AT1G06200.2 CDS AT1G06200 ID=AT1G06200.2; Parent=AT1G06200; Name=AT1G06200.2; Note=Peptidase S24/S26A/S26B/S26C family protein; computational_description=Peptidase S24/S26A/S26B/S26C family protein%3B CONTAINS InterPro DOMAIN/s: Peptidase S24/S26A/S26B/S26C%2C beta-ribbon domain (InterPro:IPR011056)%2C Peptidase S24/S26A/S26B/S26C (InterPro:IPR015927)%3B BEST Arabidopsis thaliana protein match is: Peptidase S24/S26A/S26B/S26C family protein (TAIR:AT2G31140.1)%3B Has 259 Blast hits to 259 proteins in 81 species: Archae - 0%3B Bacteria - 8%3B Metazoa - 68%3B Fungi - 34%3B Plants - 130%3B Viruses - 0%3B Other Eukaryotes - 19 (source: NCBI BLink).; Dbxref=locus:2038535; locus_type=protein_coding
AT1G06210.1	chr1:001897567	0.0	W/1897567-1898052,1898141-1898422,1898603-1898986	AT1G06210.1 CDS AT1G06210 ID=AT1G06210.1; Parent=AT1G06210; Name=AT1G06210.1; Note=ENTH/VHS/GAT family protein; conf_class=2; computational_description=ENTH/VHS/GAT family protein%3B FUNCTIONS IN: protein transporter activity%3B INVOLVED IN: intracellular protein transport%2C intra-Golgi vesicle-mediated transport%3B LOCATED IN: Golgi stack%2C intracellular%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: VHS (InterPro:IPR002014)%2C GAT (InterPro:IPR004152)%2C ENTH/VHS (InterPro:IPR008942)%3B BEST Arabidopsis thaliana protein match is: Target of Myb protein 1 (TAIR:AT5G16880.2)%3B Has 1326 Blast hits to 1324 proteins in 178 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 730%3B Fungi - 235%3B Plants - 256%3B Viruses - 0%3B Other Eukaryotes - 99 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16488176, PMID:24699223, locus:2038545; locus_type=protein_coding
AT1G06210.2	chr1:001897567	0.0	W/1897567-1898052,1898141-1898494	AT1G06210.2 CDS AT1G06210 ID=AT1G06210.2; Parent=AT1G06210; Name=AT1G06210.2; Note=ENTH/VHS/GAT family protein; conf_class=2; computational_description=ENTH/VHS/GAT family protein%3B FUNCTIONS IN: protein transporter activity%3B INVOLVED IN: intracellular protein transport%2C intra-Golgi vesicle-mediated transport%3B LOCATED IN: Golgi stack%2C intracellular%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: VHS (InterPro:IPR002014)%2C GAT (InterPro:IPR004152)%2C ENTH/VHS (InterPro:IPR008942)%3B BEST Arabidopsis thaliana protein match is: Target of Myb protein 1 (TAIR:AT5G16880.2)%3B Has 1326 Blast hits to 1324 proteins in 178 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 730%3B Fungi - 235%3B Plants - 256%3B Viruses - 0%3B Other Eukaryotes - 99 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16488176, PMID:24699223, locus:2038545; locus_type=protein_coding
AT1TE06220	chr1:001899519	0.0	C/1899519-1899767	AT1TE06220 transposable_element AT1TE06220 ID=AT1TE06220; Name=AT1TE06220; Alias=ATCOPIA69
AT1G06220.1	chr1:001900524	0.0	W/1900524-1901264,1901351-1901419,1901524-1902717,1902829-1902927,1903041-1903199,1903316-1903401,1903486-1903684,1903763-1903873,1903965-1904171,1904485-1904583	AT1G06220.1 CDS AT1G06220 ID=AT1G06220.1; Parent=AT1G06220; Name=AT1G06220.1; Note=Ribosomal protein S5/Elongation factor G/III/V family protein; curator_summary=Encodes a protein with similarity to splicing factor Snu114. Snu114 is thought to be involved in activation of the splicosome. Loss of GFA1 function results in reduced female fertility. Approximately 50%25 of ovules abort due to defects in the female gametophyte. In mutant gametophytes antipodal cells express egg cell markers suggesting a defect in specification of cell fate.GFA1 is also required to restrict the expression of LIS.; conf_class=3; symbol=MEE5; Alias=CLO, CLOTHO, GFA1, GAMETOPHYTE FACTOR 1; full_name=MATERNAL EFFECT EMBRYO ARREST 5; computational_description=MATERNAL EFFECT EMBRYO ARREST 5 (MEE5)%3B FUNCTIONS IN: translation factor activity%2C nucleic acid binding%2C GTP binding%2C translation elongation factor activity%2C GTPase activity%3B INVOLVED IN: regulation of embryo sac egg cell differentiation%2C embryo development ending in seed dormancy%3B LOCATED IN: nuclear speck%2C cell wall%2C plasma membrane%3B EXPRESSED IN: whole plant%2C cultured cell%3B CONTAINS InterPro DOMAIN/s: Protein synthesis factor%2C GTP-binding (InterPro:IPR000795)%2C Translation elongation factor EFG/EF2%2C domain IV (InterPro:IPR005517)%2C Small GTP-binding protein (InterPro:IPR005225)%2C Translation elongation factor EFG/EF2%2C C-terminal (InterPro:IPR000640)%2C Translation elongation factor EFTu/EF1A%2C domain 2 (InterPro:IPR004161)%2C Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568)%2C Ribosomal protein S5 domain 2-type fold%2C subgroup (InterPro:IPR014721)%2C Elongation factor G/III/V (InterPro:IPR009022)%2C Translation elongation/initiation factor/Ribosomal%2C beta-barrel (InterPro:IPR009000)%3B BEST Arabidopsis thaliana protein match is: Ribosomal protein S5/Elongation factor G/III/V family protein (TAIR:AT5G25230.1)%3B Has 61019 Blast hits to 57504 proteins in 4658 species: Archae - 1314%3B Bacteria - 38464%3B Metazoa - 2393%3B Fungi - 1714%3B Plants - 1333%3B Viruses - 1%3B Other Eukaryotes - 15800 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12032361, PMID:12372144, PMID:15634699, PMID:18702672, PMID:19168457, PMID:19261069, locus:2038555; locus_type=protein_coding
AT1G06220.2	chr1:001900524	0.0	W/1900524-1901264,1901351-1901419,1901524-1902717,1902829-1902927,1903041-1903199,1903316-1903401,1903486-1903684,1903763-1903873,1903965-1904171,1904485-1904583	AT1G06220.2 CDS AT1G06220 ID=AT1G06220.2; Parent=AT1G06220; Name=AT1G06220.2; Note=Ribosomal protein S5/Elongation factor G/III/V family protein; curator_summary=Encodes a protein with similarity to splicing factor Snu114. Snu114 is thought to be involved in activation of the splicosome. Loss of GFA1 function results in reduced female fertility. Approximately 50%25 of ovules abort due to defects in the female gametophyte. In mutant gametophytes antipodal cells express egg cell markers suggesting a defect in specification of cell fate.GFA1 is also required to restrict the expression of LIS.; conf_class=3; symbol=MEE5; Alias=CLO, CLOTHO, GFA1, GAMETOPHYTE FACTOR 1; full_name=MATERNAL EFFECT EMBRYO ARREST 5; computational_description=MATERNAL EFFECT EMBRYO ARREST 5 (MEE5)%3B FUNCTIONS IN: translation factor activity%2C nucleic acid binding%2C GTP binding%2C translation elongation factor activity%2C GTPase activity%3B INVOLVED IN: regulation of embryo sac egg cell differentiation%2C embryo development ending in seed dormancy%3B LOCATED IN: nuclear speck%2C cell wall%2C plasma membrane%3B EXPRESSED IN: whole plant%2C cultured cell%3B CONTAINS InterPro DOMAIN/s: Protein synthesis factor%2C GTP-binding (InterPro:IPR000795)%2C Translation elongation factor EFG/EF2%2C domain IV (InterPro:IPR005517)%2C Small GTP-binding protein (InterPro:IPR005225)%2C Translation elongation factor EFG/EF2%2C C-terminal (InterPro:IPR000640)%2C Translation elongation factor EFTu/EF1A%2C domain 2 (InterPro:IPR004161)%2C Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568)%2C Ribosomal protein S5 domain 2-type fold%2C subgroup (InterPro:IPR014721)%2C Elongation factor G/III/V (InterPro:IPR009022)%2C Translation elongation/initiation factor/Ribosomal%2C beta-barrel (InterPro:IPR009000)%3B BEST Arabidopsis thaliana protein match is: Ribosomal protein S5/Elongation factor G/III/V family protein (TAIR:AT5G25230.1)%3B Has 61019 Blast hits to 57504 proteins in 4658 species: Archae - 1314%3B Bacteria - 38464%3B Metazoa - 2393%3B Fungi - 1714%3B Plants - 1333%3B Viruses - 1%3B Other Eukaryotes - 15800 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12032361, PMID:12372144, PMID:15634699, PMID:18702672, PMID:19168457, PMID:19261069, locus:2038555; locus_type=protein_coding
AT1G06220.3	chr1:001900524	0.0	W/1900524-1901264,1901351-1901419,1901524-1902717,1902829-1902927,1903041-1903199,1903316-1903401,1903486-1903684,1903763-1903873,1903965-1904171,1904485-1904583	AT1G06220.3 CDS AT1G06220 ID=AT1G06220.3; Parent=AT1G06220; Name=AT1G06220.3; Note=Ribosomal protein S5/Elongation factor G/III/V family protein; symbol=MEE5; Alias=CLO, CLOTHO, GFA1, GAMETOPHYTE FACTOR 1; full_name=MATERNAL EFFECT EMBRYO ARREST 5; Dbxref=PMID:12032361, PMID:12372144, PMID:15634699, PMID:18702672, PMID:19168457, PMID:19261069, locus:2038555; curator_summary=Encodes a protein with similarity to splicing factor Snu114. Snu114 is thought to be involved in activation of the splicosome. Loss of GFA1 function results in reduced female fertility. Approximately 50%25 of ovules abort due to defects in the female gametophyte. In mutant gametophytes antipodal cells express egg cell markers suggesting a defect in specification of cell fate.GFA1 is also required to restrict the expression of LIS.; computational_description=MATERNAL EFFECT EMBRYO ARREST 5 (MEE5)%3B FUNCTIONS IN: translation factor activity%2C nucleic acid binding%2C GTP binding%2C translation elongation factor activity%2C GTPase activity%3B INVOLVED IN: regulation of embryo sac egg cell differentiation%2C embryo development ending in seed dormancy%3B LOCATED IN: nuclear speck%2C cell wall%2C plasma membrane%3B EXPRESSED IN: whole plant%2C cultured cell%3B CONTAINS InterPro DOMAIN/s: Protein synthesis factor%2C GTP-binding (InterPro:IPR000795)%2C Translation elongation factor EFG/EF2%2C domain IV (InterPro:IPR005517)%2C Small GTP-binding protein (InterPro:IPR005225)%2C Translation elongation factor EFG/EF2%2C C-terminal (InterPro:IPR000640)%2C Translation elongation factor EFTu/EF1A%2C domain 2 (InterPro:IPR004161)%2C Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568)%2C Ribosomal protein S5 domain 2-type fold%2C subgroup (InterPro:IPR014721)%2C Elongation factor G/III/V (InterPro:IPR009022)%2C Translation elongation/initiation factor/Ribosomal%2C beta-barrel (InterPro:IPR009000)%3B BEST Arabidopsis thaliana protein match is: Ribosomal protein S5/Elongation factor G/III/V family protein (TAIR:AT5G25230.1)%3B Has 61019 Blast hits to 57504 proteins in 4658 species: Archae - 1314%3B Bacteria - 38464%3B Metazoa - 2393%3B Fungi - 1714%3B Plants - 1333%3B Viruses - 1%3B Other Eukaryotes - 15800 (source: NCBI BLink).; locus_type=protein_coding
AT1G06225.1	chr1:001905975	0.0	W/1905975-1906226	AT1G06225.1 CDS AT1G06225 ID=AT1G06225.1; Parent=AT1G06225; Name=AT1G06225.1; Note=CLAVATA3/ESR-RELATED 3; curator_summary=Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon.; conf_class=1; symbol=CLE3; full_name=CLAVATA3/ESR-RELATED 3; computational_description=CLAVATA3/ESR-RELATED 3 (CLE3)%3B BEST Arabidopsis thaliana protein match is: CLAVATA3/ESR-RELATED 4 (TAIR:AT2G31081.1)%3B Has 21 Blast hits to 21 proteins in 5 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 21%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11457943, PMID:12602871, PMID:16489133, PMID:20884811, PMID:24449877, locus:505006104; locus_type=protein_coding
AT1G06230.1	chr1:001907626	0.0	W/1907626-1909722,1909807-1909855,1909935-1910042,1910137-1910183	AT1G06230.1 CDS AT1G06230 ID=AT1G06230.1; Parent=AT1G06230; Name=AT1G06230.1; Note=global transcription factor group E4; curator_summary=This gene is predicted to encode a bromodomain-containing protein. Plant lines expressing RNAi constructs targeted against GTE4 show some resistance to agrobacterium-mediated root transformation.; conf_class=2; symbol=GTE4; full_name=global transcription factor group E4; computational_description=global transcription factor group E4 (GTE4)%3B CONTAINS InterPro DOMAIN/s: Bromodomain (InterPro:IPR001487)%3B BEST Arabidopsis thaliana protein match is: DNA-binding bromodomain-containing protein (TAIR:AT1G17790.1)%3B Has 9656 Blast hits to 6188 proteins in 362 species: Archae - 8%3B Bacteria - 274%3B Metazoa - 4793%3B Fungi - 1365%3B Plants - 669%3B Viruses - 49%3B Other Eukaryotes - 2498 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12466527, PMID:15010618, PMID:18650403, PMID:20032077, PMID:20495359, PMID:25720653, locus:2038565; locus_type=protein_coding
AT1G06230.2	chr1:001907626	0.0	W/1907626-1909722,1909807-1909855,1909935-1910042,1910137-1910183	AT1G06230.2 CDS AT1G06230 ID=AT1G06230.2; Parent=AT1G06230; Name=AT1G06230.2; Note=global transcription factor group E4; curator_summary=This gene is predicted to encode a bromodomain-containing protein. Plant lines expressing RNAi constructs targeted against GTE4 show some resistance to agrobacterium-mediated root transformation.; conf_class=2; symbol=GTE4; full_name=global transcription factor group E4; computational_description=global transcription factor group E4 (GTE4)%3B CONTAINS InterPro DOMAIN/s: Bromodomain (InterPro:IPR001487)%3B BEST Arabidopsis thaliana protein match is: DNA-binding bromodomain-containing protein (TAIR:AT1G17790.1)%3B Has 9656 Blast hits to 6188 proteins in 362 species: Archae - 8%3B Bacteria - 274%3B Metazoa - 4793%3B Fungi - 1365%3B Plants - 669%3B Viruses - 49%3B Other Eukaryotes - 2498 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12466527, PMID:15010618, PMID:18650403, PMID:20032077, PMID:20495359, PMID:25720653, locus:2038565; locus_type=protein_coding
AT1G06230.3	chr1:001907626	0.0	W/1907626-1909722,1909807-1909855,1909935-1910042,1910137-1910183	AT1G06230.3 CDS AT1G06230 ID=AT1G06230.3; Parent=AT1G06230; Name=AT1G06230.3; Note=global transcription factor group E4; curator_summary=This gene is predicted to encode a bromodomain-containing protein. Plant lines expressing RNAi constructs targeted against GTE4 show some resistance to agrobacterium-mediated root transformation.; conf_class=4; symbol=GTE4; full_name=global transcription factor group E4; computational_description=global transcription factor group E4 (GTE4)%3B CONTAINS InterPro DOMAIN/s: Bromodomain (InterPro:IPR001487)%3B BEST Arabidopsis thaliana protein match is: DNA-binding bromodomain-containing protein (TAIR:AT1G17790.1)%3B Has 9656 Blast hits to 6188 proteins in 362 species: Archae - 8%3B Bacteria - 274%3B Metazoa - 4793%3B Fungi - 1365%3B Plants - 669%3B Viruses - 49%3B Other Eukaryotes - 2498 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:12466527, PMID:15010618, PMID:18650403, PMID:20032077, PMID:20495359, PMID:25720653, locus:2038565; locus_type=protein_coding
AT1G06230.4	chr1:001907626	0.0	W/1907626-1909722,1909807-1909855,1909935-1910042,1910137-1910183	AT1G06230.4 CDS AT1G06230 ID=AT1G06230.4; Parent=AT1G06230; Name=AT1G06230.4; Note=global transcription factor group E4; symbol=GTE4; full_name=global transcription factor group E4; Dbxref=PMID:12466527, PMID:15010618, PMID:18650403, PMID:20032077, PMID:20495359, PMID:25720653, locus:2038565; curator_summary=This gene is predicted to encode a bromodomain-containing protein. Plant lines expressing RNAi constructs targeted against GTE4 show some resistance to agrobacterium-mediated root transformation.; computational_description=global transcription factor group E4 (GTE4)%3B CONTAINS InterPro DOMAIN/s: Bromodomain (InterPro:IPR001487)%3B BEST Arabidopsis thaliana protein match is: DNA-binding bromodomain-containing protein (TAIR:AT1G17790.1)%3B Has 9656 Blast hits to 6188 proteins in 362 species: Archae - 8%3B Bacteria - 274%3B Metazoa - 4793%3B Fungi - 1365%3B Plants - 669%3B Viruses - 49%3B Other Eukaryotes - 2498 (source: NCBI BLink).; locus_type=protein_coding
AT1G06240.1	chr1:001911166	0.0	W/1911166-1911567,1911642-1911883,1911969-1912065,1912156-1912339,1912441-1912522,1912629-1912701,1912804-1912875	AT1G06240.1 CDS AT1G06240 ID=AT1G06240.1; Parent=AT1G06240; Name=AT1G06240.1; Note=diiron containing four-helix bundle family ferritin protein%2C putative (Protein of unknown function DUF455); conf_class=2; computational_description=Protein of unknown function DUF455%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF455 (InterPro:IPR007402)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function DUF455 (TAIR:AT5G04520.1)%3B Has 954 Blast hits to 954 proteins in 412 species: Archae - 0%3B Bacteria - 697%3B Metazoa - 13%3B Fungi - 46%3B Plants - 75%3B Viruses - 0%3B Other Eukaryotes - 123 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18650403, locus:2038550; locus_type=protein_coding
AT1G06250.1	chr1:001913339	0.0	C/1913339-1914016,1914190-1914547,1914615-1914850	AT1G06250.1 CDS AT1G06250 ID=AT1G06250.1; Parent=AT1G06250; Name=AT1G06250.1; Note=alpha/beta-Hydrolases superfamily protein; conf_class=1; computational_description=alpha/beta-Hydrolases superfamily protein%3B FUNCTIONS IN: triglyceride lipase activity%3B INVOLVED IN: lipid metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 10 plant structures%3B EXPRESSED DURING: 4 anthesis%2C F mature embryo stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%3B CONTAINS InterPro DOMAIN/s: Lipase%2C class 3 (InterPro:IPR002921)%3B BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G31100.1)%3B Has 1168 Blast hits to 1158 proteins in 211 species: Archae - 0%3B Bacteria - 223%3B Metazoa - 26%3B Fungi - 117%3B Plants - 633%3B Viruses - 4%3B Other Eukaryotes - 165 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15130548, PMID:18433503, PMID:23505340, locus:2038505; locus_type=protein_coding
AT1G06250.2	chr1:001913339	0.0	C/1913339-1914016,1914190-1914441	AT1G06250.2 CDS AT1G06250 ID=AT1G06250.2; Parent=AT1G06250; Name=AT1G06250.2; Note=alpha/beta-Hydrolases superfamily protein; computational_description=alpha/beta-Hydrolases superfamily protein%3B FUNCTIONS IN: triglyceride lipase activity%3B INVOLVED IN: lipid metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 10 plant structures%3B EXPRESSED DURING: 4 anthesis%2C F mature embryo stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%3B CONTAINS InterPro DOMAIN/s: Lipase%2C class 3 (InterPro:IPR002921)%3B BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G31100.1)%3B Has 1168 Blast hits to 1158 proteins in 211 species: Archae - 0%3B Bacteria - 223%3B Metazoa - 26%3B Fungi - 117%3B Plants - 633%3B Viruses - 4%3B Other Eukaryotes - 165 (source: NCBI BLink).; Dbxref=PMID:15130548, PMID:18433503, PMID:23505340, locus:2038505; locus_type=protein_coding
AT1G06265.1	chr1:001914943	0.0	C/1914943-1917661	AT1G06265.1 antisense_lncRNA AT1G06265 ID=AT1G06265.1; Parent=AT1G06265; curator_summary=Potential natural antisense gene%2C locus overlaps with AT1G06260; Dbxref=PMID:20032078, locus:4010713416; Name=AT1G06265.1; description=Natural antisense transcript overlaps with AT1G06260; Note=Natural antisense transcript overlaps with AT1G06260; locus_type=antisense_long_noncoding_rna
AT1G06265.2	chr1:001915008	0.0	C/1915008-1916278	AT1G06265.2 antisense_lncRNA AT1G06265 ID=AT1G06265.2; Parent=AT1G06265; curator_summary=Potential natural antisense gene%2C locus overlaps with AT1G06260; Dbxref=PMID:20032078, locus:4010713416; Name=AT1G06265.2; description=Natural antisense transcript overlaps with AT1G06260; Note=Natural antisense transcript overlaps with AT1G06260; locus_type=antisense_long_noncoding_rna
AT1G06265.3	chr1:001916444	0.0	C/1916444-1916957	AT1G06265.3 antisense_lncRNA AT1G06265 ID=AT1G06265.3; Parent=AT1G06265; Name=AT1G06265.3; description=Natural antisense transcript overlaps with AT1G06260; curator_summary=Potential natural antisense gene%2C locus overlaps with AT1G06260; Note=Natural antisense transcript overlaps with AT1G06260; Dbxref=PMID:20032078, locus:4010713416; locus_type=antisense_long_noncoding_rna
AT1G06260.1	chr1:001916449	0.0	W/1916449-1916893,1916999-1917585	AT1G06260.1 CDS AT1G06260 ID=AT1G06260.1; Parent=AT1G06260; Name=AT1G06260.1; Note=Cysteine proteinases superfamily protein; conf_class=2; computational_description=Cysteine proteinases superfamily protein%3B FUNCTIONS IN: cysteine-type peptidase activity%2C cysteine-type endopeptidase activity%3B INVOLVED IN: proteolysis%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: petal%2C leaf whorl%2C sepal%2C flower%3B EXPRESSED DURING: 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Peptidase C1A%2C papain (InterPro:IPR013128)%2C Proteinase inhibitor I29%2C cathepsin propeptide (InterPro:IPR013201)%2C Peptidase C1A%2C papain C-terminal (InterPro:IPR000668)%2C Peptidase%2C cysteine peptidase active site (InterPro:IPR000169)%3B BEST Arabidopsis thaliana protein match is: Granulin repeat cysteine protease family protein (TAIR:AT3G19390.1)%3B Has 7835 Blast hits to 7772 proteins in 746 species: Archae - 66%3B Bacteria - 269%3B Metazoa - 3267%3B Fungi - 4%3B Plants - 1872%3B Viruses - 136%3B Other Eukaryotes - 2221 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14697270, PMID:18252252, PMID:21798377, locus:2038515; locus_type=protein_coding
AT1G06270.1	chr1:001918242	0.0	C/1918242-1919273	AT1G06270.1 CDS AT1G06270 ID=AT1G06270.1; Parent=AT1G06270; Name=AT1G06270.1; Note=Pentatricopeptide repeat (PPR) superfamily protein; conf_class=2; computational_description=Pentatricopeptide repeat (PPR) superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: rna processing factor 2 (TAIR:AT1G62670.1)%3B Has 12812 Blast hits to 4675 proteins in 155 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 63%3B Plants - 12587%3B Viruses - 0%3B Other Eukaryotes - 162 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:20226671, PMID:21908688, locus:2038525; locus_type=protein_coding
AT1G06280.1	chr1:001920327	0.0	C/1920327-1920947	AT1G06280.1 CDS AT1G06280 ID=AT1G06280.1; Parent=AT1G06280; Name=AT1G06280.1; Note=LOB domain-containing protein 2; conf_class=1; symbol=LBD2; full_name=LOB domain-containing protein 2; computational_description=LOB domain-containing protein 2 (LBD2)%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B CONTAINS InterPro DOMAIN/s: Lateral organ boundaries%2C LOB (InterPro:IPR004883)%3B BEST Arabidopsis thaliana protein match is: Lateral organ boundaries (LOB) domain family protein (TAIR:AT1G65620.4)%3B Has 899 Blast hits to 894 proteins in 25 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 888%3B Viruses - 0%3B Other Eukaryotes - 11 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12068116, PMID:12040093, PMID:14576160, PMID:16934950, PMID:19154202, PMID:21104372, locus:2038530; locus_type=protein_coding
AT1G06290.1	chr1:001922423	0.0	W/1922423-1922892,1923141-1923258,1923353-1923460,1923570-1923742,1923822-1923921,1924009-1924083,1924193-1924323,1924465-1924600,1924686-1924805,1924897-1925043,1925138-1925242,1925341-1925442,1925760-1926002	AT1G06290.1 CDS AT1G06290 ID=AT1G06290.1; Parent=AT1G06290; Name=AT1G06290.1; Note=acyl-CoA oxidase 3; curator_summary=Encodes an acyl-CoA oxidase with specificity for medium chain fatty acids.; conf_class=1; symbol=ACX3; Alias=ATACX3; full_name=acyl-CoA oxidase 3; computational_description=acyl-CoA oxidase 3 (ACX3)%3B FUNCTIONS IN: acyl-CoA oxidase activity%3B INVOLVED IN: medium-chain fatty acid metabolic process%2C fatty acid beta-oxidation%3B LOCATED IN: peroxisome%3B EXPRESSED IN: male gametophyte%2C guard cell%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%3B CONTAINS InterPro DOMAIN/s: Acyl-CoA oxidase/dehydrogenase%2C type1/2%2C C-terminal (InterPro:IPR013764)%2C Acyl-CoA oxidase/dehydrogenase%2C type 1 (InterPro:IPR006090)%2C Acyl-CoA dehydrogenase/oxidase (InterPro:IPR009100)%2C Acyl-CoA oxidase (InterPro:IPR012258)%2C Acyl-CoA oxidase/dehydrogenase%2C central domain (InterPro:IPR006091)%2C Acyl-CoA oxidase%2C C-terminal (InterPro:IPR002655)%2C Acyl-CoA dehydrogenase/oxidase C-terminal (InterPro:IPR009075)%3B BEST Arabidopsis thaliana protein match is: acyl-CoA oxidase 6 (TAIR:AT1G06310.1)%3B Has 12520 Blast hits to 12510 proteins in 1399 species: Archae - 229%3B Bacteria - 8347%3B Metazoa - 1502%3B Fungi - 589%3B Plants - 297%3B Viruses - 0%3B Other Eukaryotes - 1556 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:10571860, PMID:10918060, PMID:14701923, PMID:14671017, PMID:15743450, PMID:15787611, PMID:15860015, PMID:16146525, PMID:17277896, PMID:17580301, PMID:18775970, PMID:18931141, PMID:20736450, PMID:23505340, locus:2038540; locus_type=protein_coding
AT1G06310.1	chr1:001926802	0.0	W/1926802-1927271,1927360-1927477,1927555-1927662,1927737-1927909,1927995-1928094,1928178-1928252,1928363-1928493,1928735-1928870,1928959-1929078,1929162-1929308,1929392-1929496,1929581-1929682,1929985-1930227	AT1G06310.1 CDS AT1G06310 ID=AT1G06310.1; Parent=AT1G06310; Name=AT1G06310.1; Note=acyl-CoA oxidase 6; curator_summary=Encodes a putative acyl-CoA oxidase. However%2C no transcripts have been detected for this gene and no altered phenotypes have been detected in plants mutant for this gene. This suggests that ACX6 does not significantly contribute to seedling beta-oxidation of fatty acids or indole-3-butyric acid in vivo.; conf_class=6; symbol=ACX6; full_name=acyl-CoA oxidase 6; computational_description=acyl-CoA oxidase 6 (ACX6)%3B FUNCTIONS IN: acyl-CoA dehydrogenase activity%2C oxidoreductase activity%2C acting on the CH-CH group of donors%2C oxidoreductase activity%2C FAD binding%2C acyl-CoA oxidase activity%3B INVOLVED IN: oxidation reduction%2C fatty acid beta-oxidation%2C fatty acid metabolic process%2C metabolic process%3B LOCATED IN: peroxisome%3B EXPRESSED IN: root%3B CONTAINS InterPro DOMAIN/s: Acyl-CoA oxidase/dehydrogenase%2C type1/2%2C C-terminal (InterPro:IPR013764)%2C Acyl-CoA oxidase/dehydrogenase%2C type 1 (InterPro:IPR006090)%2C Acyl-CoA dehydrogenase/oxidase (InterPro:IPR009100)%2C Acyl-CoA oxidase (InterPro:IPR012258)%2C Acyl-CoA dehydrogenase/oxidase%2C N-terminal (InterPro:IPR013786)%2C Acyl-CoA oxidase/dehydrogenase%2C central domain (InterPro:IPR006091)%2C Acyl-CoA oxidase%2C C-terminal (InterPro:IPR002655)%2C Acyl-CoA dehydrogenase/oxidase C-terminal (InterPro:IPR009075)%3B BEST Arabidopsis thaliana protein match is: acyl-CoA oxidase 3 (TAIR:AT1G06290.1)%3B Has 11223 Blast hits to 11219 proteins in 1363 species: Archae - 224%3B Bacteria - 7535%3B Metazoa - 1409%3B Fungi - 559%3B Plants - 271%3B Viruses - 0%3B Other Eukaryotes - 1225 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:12682048, PMID:14701923, PMID:15743450, PMID:16146525, PMID:16776300, PMID:17580301, PMID:22048901, PMID:23505340, locus:2202275; locus_type=protein_coding
AT1G06320.1	chr1:001930602	0.0	W/1930602-1930700,1930791-1930835,1931006-1931449	AT1G06320.1 CDS AT1G06320 ID=AT1G06320.1; Parent=AT1G06320; Name=AT1G06320.1; Note=hypothetical protein; conf_class=3; computational_description=unknown protein%3B Has 24 Blast hits to 24 proteins in 10 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 0%3B Fungi - 0%3B Plants - 20%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2202285; locus_type=protein_coding
AT1G06330.1	chr1:001931671	0.0	C/1931671-1932041,1932158-1932233,1932348-1932353	AT1G06330.1 CDS AT1G06330 ID=AT1G06330.1; Parent=AT1G06330; Name=AT1G06330.1; Note=Heavy metal transport/detoxification superfamily protein; conf_class=4; computational_description=Heavy metal transport/detoxification superfamily protein %3B FUNCTIONS IN: copper ion binding%2C metal ion binding%3B INVOLVED IN: copper ion transport%2C metal ion transport%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121)%3B BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT2G18196.1)%3B Has 1362 Blast hits to 1319 proteins in 117 species: Archae - 0%3B Bacteria - 114%3B Metazoa - 22%3B Fungi - 14%3B Plants - 1212%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:12196180, PMID:15282545, PMID:23368984, locus:2202265; locus_type=protein_coding
AT1G06340.1	chr1:001933583	0.0	C/1933583-1933987	AT1G06340.1 CDS AT1G06340 ID=AT1G06340.1; Parent=AT1G06340; Name=AT1G06340.1; Note=Plant Tudor-like protein; conf_class=1; computational_description=Plant Tudor-like protein%3B FUNCTIONS IN: RNA binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Tudor-like%2C plant (InterPro:IPR014002)%2C Agenet (InterPro:IPR008395)%3B BEST Arabidopsis thaliana protein match is: agenet domain-containing protein (TAIR:AT1G09320.1)%3B Has 263 Blast hits to 216 proteins in 16 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 260%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12575993, locus:2202295; locus_type=protein_coding
AT1G06350.1	chr1:001935510	0.0	C/1935510-1935708,1935799-1935905,1936004-1936144,1936228-1936368,1936475-1936789	AT1G06350.1 CDS AT1G06350 ID=AT1G06350.1; Parent=AT1G06350; Name=AT1G06350.1; Note=Fatty acid desaturase family protein; conf_class=2; symbol=ADS4; Alias=AtADS4; full_name=delta 9 desaturase 4; computational_description=Fatty acid desaturase family protein%3B FUNCTIONS IN: oxidoreductase activity%2C oxidoreductase activity%2C acting on paired donors%2C with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water%3B INVOLVED IN: oxidation reduction%2C lipid metabolic process%3B CONTAINS InterPro DOMAIN/s: Fatty acid desaturase%2C type 1%2C core (InterPro:IPR015876)%2C Fatty acid desaturase%2C type 1 (InterPro:IPR005804)%3B BEST Arabidopsis thaliana protein match is: Fatty acid desaturase family protein (TAIR:AT1G06360.1)%3B Has 3426 Blast hits to 3426 proteins in 822 species: Archae - 0%3B Bacteria - 1532%3B Metazoa - 799%3B Fungi - 234%3B Plants - 106%3B Viruses - 4%3B Other Eukaryotes - 751 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12969431, PMID:15272001, PMID:16299181, PMID:16299169, PMID:16460663, PMID:18650403, PMID:18772308, PMID:20736450, PMID:23175755, PMID:23505340, locus:2202305; locus_type=protein_coding
AT1TE06340	chr1:001937510	0.0	W/1937510-1938638	AT1TE06340 transposable_element AT1TE06340 ID=AT1TE06340; Name=AT1TE06340; Alias=ATREP15
AT1TE06345	chr1:001938639	0.0	C/1938639-1938678	AT1TE06345 transposable_element AT1TE06345 ID=AT1TE06345; Name=AT1TE06345; Alias=ATREP3
AT1G06360.1	chr1:001939173	0.0	C/1939173-1939371,1939464-1939570,1939658-1939798,1939874-1940014,1940106-1940417	AT1G06360.1 CDS AT1G06360 ID=AT1G06360.1; Parent=AT1G06360; Name=AT1G06360.1; Note=Fatty acid desaturase family protein; conf_class=2; computational_description=Fatty acid desaturase family protein%3B FUNCTIONS IN: oxidoreductase activity%2C oxidoreductase activity%2C acting on paired donors%2C with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water%3B INVOLVED IN: oxidation reduction%2C lipid metabolic process%3B CONTAINS InterPro DOMAIN/s: Fatty acid desaturase%2C type 1%2C core (InterPro:IPR015876)%2C Fatty acid desaturase%2C type 1 (InterPro:IPR005804)%3B BEST Arabidopsis thaliana protein match is: Fatty acid desaturase family protein (TAIR:AT1G06350.1)%3B Has 3432 Blast hits to 3432 proteins in 822 species: Archae - 0%3B Bacteria - 1534%3B Metazoa - 802%3B Fungi - 234%3B Plants - 106%3B Viruses - 4%3B Other Eukaryotes - 752 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16460663, PMID:18650403, PMID:20736450, PMID:23175755, PMID:23505340, locus:2202250; locus_type=protein_coding
AT1G06360.2	chr1:001939173	0.0	C/1939173-1939371,1939464-1939570,1939658-1939798,1939874-1940014,1940106-1940465	AT1G06360.2 CDS AT1G06360 ID=AT1G06360.2; Parent=AT1G06360; Name=AT1G06360.2; Note=Fatty acid desaturase family protein; computational_description=Fatty acid desaturase family protein%3B FUNCTIONS IN: oxidoreductase activity%2C oxidoreductase activity%2C acting on paired donors%2C with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water%3B INVOLVED IN: oxidation reduction%2C lipid metabolic process%3B CONTAINS InterPro DOMAIN/s: Fatty acid desaturase%2C type 1%2C core (InterPro:IPR015876)%2C Fatty acid desaturase%2C type 1 (InterPro:IPR005804)%3B BEST Arabidopsis thaliana protein match is: Fatty acid desaturase family protein (TAIR:AT1G06350.1)%3B Has 3432 Blast hits to 3432 proteins in 822 species: Archae - 0%3B Bacteria - 1534%3B Metazoa - 802%3B Fungi - 234%3B Plants - 106%3B Viruses - 4%3B Other Eukaryotes - 752 (source: NCBI BLink).; Dbxref=PMID:16460663, PMID:18650403, PMID:20736450, PMID:23175755, PMID:23505340, locus:2202250; locus_type=protein_coding
AT1G06370.1	chr1:001942614	0.0	C/1942614-1944991	AT1G06370.1 pseudogenic_transcript AT1G06370 ID=AT1G06370.1; Parent=AT1G06370; Name=AT1G06370.1; Note=pseudogene; computational_description=pseudogene%2C similar to putative glycolipid alpha-mannosyltransferase%2C blastp match of 41%25 identity and 9.6e-10 P-value to GP|13161358|dbj|BAB32949.1||AP002908 putative glycolipid alpha-mannosyltransferase %7BOryza sativa (japonica cultivar-group)%7D; Dbxref=locus:2826791; locus_type=pseudogene
AT1G06370.2	chr1:001942614	0.0	C/1942614-1944991	AT1G06370.2 pseudogenic_transcript AT1G06370 ID=AT1G06370.2; Parent=AT1G06370; Name=AT1G06370.2; Note=pseudogene; computational_description=pseudogene%2C similar to putative glycolipid alpha-mannosyltransferase%2C blastp match of 41%25 identity and 9.6e-10 P-value to GP|13161358|dbj|BAB32949.1||AP002908 putative glycolipid alpha-mannosyltransferase %7BOryza sativa (japonica cultivar-group)%7D; Dbxref=locus:2826791; locus_type=pseudogene
AT1G06370.3	chr1:001942614	0.0	C/1942614-1944991	AT1G06370.3 pseudogenic_transcript AT1G06370 ID=AT1G06370.3; Parent=AT1G06370; Name=AT1G06370.3; Note=pseudogene; computational_description=pseudogene%2C similar to putative glycolipid alpha-mannosyltransferase%2C blastp match of 41%25 identity and 9.6e-10 P-value to GP|13161358|dbj|BAB32949.1||AP002908 putative glycolipid alpha-mannosyltransferase %7BOryza sativa (japonica cultivar-group)%7D; Dbxref=locus:2826791; locus_type=pseudogene
AT1G06370.4	chr1:001942614	0.0	C/1942614-1944991	AT1G06370.4 pseudogenic_transcript AT1G06370 ID=AT1G06370.4; Parent=AT1G06370; Name=AT1G06370.4; Note=pseudogene; computational_description=pseudogene%2C similar to putative glycolipid alpha-mannosyltransferase%2C blastp match of 41%25 identity and 9.6e-10 P-value to GP|13161358|dbj|BAB32949.1||AP002908 putative glycolipid alpha-mannosyltransferase %7BOryza sativa (japonica cultivar-group)%7D; Dbxref=locus:2826791; locus_type=pseudogene
AT1G06370.5	chr1:001942629	0.0	C/1942629-1944978	AT1G06370.5 pseudogenic_transcript AT1G06370 ID=AT1G06370.5; Parent=AT1G06370; Name=AT1G06370.5; Note=pseudogene; computational_description=pseudogene%2C similar to putative glycolipid alpha-mannosyltransferase%2C blastp match of 41%25 identity and 9.6e-10 P-value to GP|13161358|dbj|BAB32949.1||AP002908 putative glycolipid alpha-mannosyltransferase %7BOryza sativa (japonica cultivar-group)%7D; Dbxref=locus:2826791; locus_type=pseudogene
AT1G06380.1	chr1:001945124	0.0	W/1945124-1945888	AT1G06380.1 CDS AT1G06380 ID=AT1G06380.1; Parent=AT1G06380; Name=AT1G06380.1; Note=Ribosomal protein L1p/L10e family; conf_class=1; computational_description=Ribosomal protein L1p/L10e family%3B FUNCTIONS IN: RNA binding%3B INVOLVED IN: RNA processing%3B LOCATED IN: chloroplast%2C chloroplast envelope%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L1 (InterPro:IPR002143)%3B BEST Arabidopsis thaliana protein match is: Ribosomal protein L1p/L10e family (TAIR:AT2G42650.1)%3B Has 1018 Blast hits to 1018 proteins in 280 species: Archae - 3%3B Bacteria - 0%3B Metazoa - 406%3B Fungi - 260%3B Plants - 220%3B Viruses - 0%3B Other Eukaryotes - 129 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:20736450, locus:2202260; locus_type=protein_coding
AT1G06390.1	chr1:001946860	0.0	W/1946860-1946964,1948123-1948215,1948429-1948488,1948574-1948846,1948936-1949010,1949085-1949141,1949315-1949455,1949567-1949617,1949725-1949820,1949938-1950021,1950149-1950250,1950331-1950417	AT1G06390.1 CDS AT1G06390 ID=AT1G06390.1; Parent=AT1G06390; Name=AT1G06390.1; Note=GSK3/SHAGGY-like protein kinase 1; curator_summary=encodes a GSK3/shaggy-like protein kinase. Gene expression is induced by NaCl and ABA but not KCl%2C suggesting that this gene may be involved in response to osmotic stress. This protein can interact with the BZR1 protein involved in brassinosteroid-mediated signaling in a Y2H assay and promotes BZR1 phosphorylation in protoplasts.; conf_class=2; symbol=GSK1; Alias=ATGSK1, ATSK2-3, A. THALIANA SHAGGY-LIKE KINASE GROUP 2 3, ATSK22, SHAGGY-LIKE PROTEIN KINASE 22, BIL2, BIN2-LIKE 2, SK22, SHAGGY-LIKE PROTEIN KINASE 22; full_name=GSK3/SHAGGY-like protein kinase 1; computational_description=GSK3/SHAGGY-like protein kinase 1 (GSK1)%3B FUNCTIONS IN: kinase activity%2C glycogen synthase kinase 3 activity%3B INVOLVED IN: brassinosteroid mediated signaling pathway%2C protein amino acid phosphorylation%2C hyperosmotic salinity response%2C regulation of protein localization%3B LOCATED IN: cytosol%2C plasma membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: SHAGGY-related protein kinase dZeta (TAIR:AT2G30980.1)%3B Has 107835 Blast hits to 106562 proteins in 3623 species: Archae - 81%3B Bacteria - 10704%3B Metazoa - 38361%3B Fungi - 11903%3B Plants - 28114%3B Viruses - 380%3B Other Eukaryotes - 18292 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10198112, PMID:11532176, PMID:12399181, PMID:12376626, PMID:12913170, PMID:16007489, PMID:17873094, PMID:18433157, PMID:19395409, PMID:21477822, PMID:23496207, PMID:24771765, locus:2202255; locus_type=protein_coding
AT1G06390.2	chr1:001946860	0.0	W/1946860-1946964,1948123-1948215,1948429-1948488,1948574-1948846,1948936-1949010,1949085-1949141,1949315-1949455,1949567-1949617,1949725-1949820,1949938-1950021,1950149-1950250,1950331-1950417	AT1G06390.2 CDS AT1G06390 ID=AT1G06390.2; Parent=AT1G06390; Name=AT1G06390.2; Note=GSK3/SHAGGY-like protein kinase 1; curator_summary=encodes a GSK3/shaggy-like protein kinase. Gene expression is induced by NaCl and ABA but not KCl%2C suggesting that this gene may be involved in response to osmotic stress. This protein can interact with the BZR1 protein involved in brassinosteroid-mediated signaling in a Y2H assay and promotes BZR1 phosphorylation in protoplasts.; conf_class=2; symbol=GSK1; Alias=ATGSK1, ATSK2-3, A. THALIANA SHAGGY-LIKE KINASE GROUP 2 3, ATSK22, SHAGGY-LIKE PROTEIN KINASE 22, BIL2, BIN2-LIKE 2, SK22, SHAGGY-LIKE PROTEIN KINASE 22; full_name=GSK3/SHAGGY-like protein kinase 1; computational_description=GSK3/SHAGGY-like protein kinase 1 (GSK1)%3B FUNCTIONS IN: kinase activity%2C glycogen synthase kinase 3 activity%3B INVOLVED IN: brassinosteroid mediated signaling pathway%2C protein amino acid phosphorylation%2C hyperosmotic salinity response%2C regulation of protein localization%3B LOCATED IN: cytosol%2C plasma membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: SHAGGY-related protein kinase dZeta (TAIR:AT2G30980.1)%3B Has 107835 Blast hits to 106562 proteins in 3623 species: Archae - 81%3B Bacteria - 10704%3B Metazoa - 38361%3B Fungi - 11903%3B Plants - 28114%3B Viruses - 380%3B Other Eukaryotes - 18292 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10198112, PMID:11532176, PMID:12399181, PMID:12376626, PMID:12913170, PMID:16007489, PMID:17873094, PMID:18433157, PMID:19395409, PMID:21477822, PMID:23496207, PMID:24771765, locus:2202255; locus_type=protein_coding
AT1G06400.1	chr1:001951089	0.0	C/1951089-1951518,1952466-1952686	AT1G06400.1 CDS AT1G06400 ID=AT1G06400.1; Parent=AT1G06400; Name=AT1G06400.1; Note=Ras-related small GTP-binding family protein; curator_summary=small GTP-binding protein (ara-2); conf_class=2; symbol=ARA-2; computational_description=ARA-2%3B FUNCTIONS IN: GTP binding%3B INVOLVED IN: protein transport%2C small GTPase mediated signal transduction%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806)%2C Small GTP-binding protein (InterPro:IPR005225)%2C Small GTPase (InterPro:IPR020851)%2C Ras (InterPro:IPR013753)%2C Ras small GTPase%2C Rab type (InterPro:IPR003579)%2C Rab11-related (InterPro:IPR015595)%3B BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A1C (TAIR:AT5G45750.1)%3B Has 26542 Blast hits to 26487 proteins in 734 species: Archae - 28%3B Bacteria - 140%3B Metazoa - 13950%3B Fungi - 3642%3B Plants - 2996%3B Viruses - 20%3B Other Eukaryotes - 5766 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:1748311, PMID:12644670, PMID:16146321, PMID:19199049, locus:2202280; locus_type=protein_coding
AT1G04453.1	chr1:001953734	0.0	C/1953734-1954192	AT1G04453.1 lnc_RNA AT1G04453 ID=AT1G04453.1; Parent=AT1G04453; Name=AT1G04453.1; locus_type=long_noncoding_rna
AT1G06410.1	chr1:001955413	0.0	W/1955413-1957382,1957477-1957750,1957842-1958153	AT1G06410.1 CDS AT1G06410 ID=AT1G06410.1; Parent=AT1G06410; Name=AT1G06410.1; Note=trehalose-phosphatase/synthase 7; curator_summary=Encodes an enzyme putatively involved in trehalose biosynthesis. Though the protein has both trehalose-6-phosphate synthase (TPS)-like and trehalose-6-phosphate phosphatase (TPP)-like domains%2C neither activity has been detected in enzymatic assays nor has the protein been able to complement yeast TPS or TPP mutants.; conf_class=2; symbol=TPS7; Alias=ATTPS7, trehalose-phosphatase/synthase 7, ATTPSA; full_name=trehalose-phosphatase/synthase 7; computational_description=trehalose-phosphatase/synthase 7 (TPS7)%3B FUNCTIONS IN: transferase activity%2C transferring glycosyl groups%2C trehalose-phosphatase activity%3B INVOLVED IN: trehalose biosynthetic process%2C metabolic process%3B EXPRESSED IN: 27 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase%2C subfamily IIB (InterPro:IPR006379)%2C Glycosyl transferase%2C family 20 (InterPro:IPR001830)%2C Trehalose-phosphatase (InterPro:IPR003337)%3B BEST Arabidopsis thaliana protein match is: trehalose phosphatase/synthase 5 (TAIR:AT4G17770.1)%3B Has 4234 Blast hits to 4163 proteins in 1008 species: Archae - 52%3B Bacteria - 2285%3B Metazoa - 161%3B Fungi - 658%3B Plants - 607%3B Viruses - 0%3B Other Eukaryotes - 471 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11701378, PMID:11520870, PMID:12508064, PMID:14576160, PMID:18201973, PMID:18650403, PMID:18775970, PMID:19344332, PMID:23148892, locus:2202290; locus_type=protein_coding
AT1G06410.2	chr1:001955413	0.0	W/1955413-1957382,1957477-1957750,1957842-1958153	AT1G06410.2 CDS AT1G06410 ID=AT1G06410.2; Parent=AT1G06410; Name=AT1G06410.2; Note=trehalose-phosphatase/synthase 7; symbol=TPS7; Alias=ATTPS7, trehalose-phosphatase/synthase 7, ATTPSA; full_name=trehalose-phosphatase/synthase 7; Dbxref=PMID:11701378, PMID:11520870, PMID:12508064, PMID:14576160, PMID:18201973, PMID:18650403, PMID:18775970, PMID:19344332, PMID:23148892, locus:2202290; curator_summary=Encodes an enzyme putatively involved in trehalose biosynthesis. Though the protein has both trehalose-6-phosphate synthase (TPS)-like and trehalose-6-phosphate phosphatase (TPP)-like domains%2C neither activity has been detected in enzymatic assays nor has the protein been able to complement yeast TPS or TPP mutants.; computational_description=trehalose-phosphatase/synthase 7 (TPS7)%3B FUNCTIONS IN: transferase activity%2C transferring glycosyl groups%2C trehalose-phosphatase activity%3B INVOLVED IN: trehalose biosynthetic process%2C metabolic process%3B EXPRESSED IN: 27 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase%2C subfamily IIB (InterPro:IPR006379)%2C Glycosyl transferase%2C family 20 (InterPro:IPR001830)%2C Trehalose-phosphatase (InterPro:IPR003337)%3B BEST Arabidopsis thaliana protein match is: trehalose phosphatase/synthase 5 (TAIR:AT4G17770.1)%3B Has 4234 Blast hits to 4163 proteins in 1008 species: Archae - 52%3B Bacteria - 2285%3B Metazoa - 161%3B Fungi - 658%3B Plants - 607%3B Viruses - 0%3B Other Eukaryotes - 471 (source: NCBI BLink).; locus_type=protein_coding
AT1G06410.3	chr1:001955413	0.0	W/1955413-1957382,1957477-1957750,1957842-1958153	AT1G06410.3 CDS AT1G06410 ID=AT1G06410.3; Parent=AT1G06410; Name=AT1G06410.3; Note=trehalose-phosphatase/synthase 7; symbol=TPS7; Alias=ATTPS7, trehalose-phosphatase/synthase 7, ATTPSA; full_name=trehalose-phosphatase/synthase 7; Dbxref=PMID:11701378, PMID:11520870, PMID:12508064, PMID:14576160, PMID:18201973, PMID:18650403, PMID:18775970, PMID:19344332, PMID:23148892, locus:2202290; curator_summary=Encodes an enzyme putatively involved in trehalose biosynthesis. Though the protein has both trehalose-6-phosphate synthase (TPS)-like and trehalose-6-phosphate phosphatase (TPP)-like domains%2C neither activity has been detected in enzymatic assays nor has the protein been able to complement yeast TPS or TPP mutants.; computational_description=trehalose-phosphatase/synthase 7 (TPS7)%3B FUNCTIONS IN: transferase activity%2C transferring glycosyl groups%2C trehalose-phosphatase activity%3B INVOLVED IN: trehalose biosynthetic process%2C metabolic process%3B EXPRESSED IN: 27 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase%2C subfamily IIB (InterPro:IPR006379)%2C Glycosyl transferase%2C family 20 (InterPro:IPR001830)%2C Trehalose-phosphatase (InterPro:IPR003337)%3B BEST Arabidopsis thaliana protein match is: trehalose phosphatase/synthase 5 (TAIR:AT4G17770.1)%3B Has 4234 Blast hits to 4163 proteins in 1008 species: Archae - 52%3B Bacteria - 2285%3B Metazoa - 161%3B Fungi - 658%3B Plants - 607%3B Viruses - 0%3B Other Eukaryotes - 471 (source: NCBI BLink).; locus_type=protein_coding
AT1G06420.1	chr1:001958987	0.0	W/1958987-1959652	AT1G06420.1 CDS AT1G06420 ID=AT1G06420.1; Parent=AT1G06420; Name=AT1G06420.1; Note=DNA ligase-like protein; conf_class=4; computational_description=unknown protein%3B Has 1017 Blast hits to 654 proteins in 124 species: Archae - 0%3B Bacteria - 39%3B Metazoa - 232%3B Fungi - 69%3B Plants - 40%3B Viruses - 0%3B Other Eukaryotes - 637 (source: NCBI BLink).; conf_rating=***; Dbxref=locus:2202300; locus_type=protein_coding
AT1G06420.2	chr1:001958987	0.0	W/1958987-1959032,1959102-1959652	AT1G06420.2 CDS AT1G06420 ID=AT1G06420.2; Parent=AT1G06420; Name=AT1G06420.2; Note=DNA ligase-like protein; conf_class=4; computational_description=unknown protein%3B Has 1017 Blast hits to 654 proteins in 124 species: Archae - 0%3B Bacteria - 39%3B Metazoa - 232%3B Fungi - 69%3B Plants - 40%3B Viruses - 0%3B Other Eukaryotes - 637 (source: NCBI BLink).; conf_rating=***; Dbxref=locus:2202300; locus_type=protein_coding
AT1G06430.1	chr1:001960214	0.0	C/1960214-1960564,1960655-1960895,1960970-1961283,1961374-1962525	AT1G06430.1 CDS AT1G06430 ID=AT1G06430.1; Parent=AT1G06430; Name=AT1G06430.1; Note=FTSH protease 8; curator_summary=encodes a FtsH protease that is localized to the chloroplast; conf_class=2; symbol=FTSH8; full_name=FTSH protease 8; computational_description=FTSH protease 8 (FTSH8)%3B FUNCTIONS IN: metallopeptidase activity%2C ATP-dependent peptidase activity%2C ATPase activity%2C zinc ion binding%3B INVOLVED IN: PSII associated light-harvesting complex II catabolic process%3B LOCATED IN: thylakoid%2C chloroplast thylakoid membrane%2C chloroplast%2C membrane%2C chloroplast envelope%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase M41%2C FtsH (InterPro:IPR005936)%2C ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C ATPase%2C AAA-type%2C core (InterPro:IPR003959)%2C ATPase%2C AAA-type%2C conserved site (InterPro:IPR003960)%2C Peptidase M41 (InterPro:IPR000642)%2C Peptidase M41%2C FtsH extracellular (InterPro:IPR011546)%3B BEST Arabidopsis thaliana protein match is: FtsH extracellular protease family (TAIR:AT2G30950.1)%3B Has 41562 Blast hits to 39150 proteins in 3282 species: Archae - 1592%3B Bacteria - 17123%3B Metazoa - 4966%3B Fungi - 3846%3B Plants - 3320%3B Viruses - 34%3B Other Eukaryotes - 10681 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11299370, PMID:12185496, PMID:11826309, PMID:14630971, PMID:14730085, PMID:14729914, PMID:14996218, PMID:15047901, PMID:15247402, PMID:15235117, PMID:15322131, PMID:16126834, PMID:16157880, PMID:16330762, PMID:16500996, PMID:16972165, PMID:17181860, PMID:17217462, PMID:17432890, PMID:18230142, PMID:18431481, PMID:18633119, PMID:19228339, PMID:20118269, PMID:21062893, PMID:21214651, PMID:22121866, PMID:23548781, locus:2009235; locus_type=protein_coding
AT1G06430.2	chr1:001960214	0.0	C/1960214-1960564,1960655-1960895,1960970-1961283,1961374-1962525	AT1G06430.2 CDS AT1G06430 ID=AT1G06430.2; Parent=AT1G06430; Name=AT1G06430.2; Note=FTSH protease 8; symbol=FTSH8; full_name=FTSH protease 8; Dbxref=PMID:11299370, PMID:12185496, PMID:11826309, PMID:14630971, PMID:14730085, PMID:14729914, PMID:14996218, PMID:15047901, PMID:15247402, PMID:15235117, PMID:15322131, PMID:16126834, PMID:16157880, PMID:16330762, PMID:16500996, PMID:16972165, PMID:17181860, PMID:17217462, PMID:17432890, PMID:18230142, PMID:18431481, PMID:18633119, PMID:19228339, PMID:20118269, PMID:21062893, PMID:21214651, PMID:22121866, PMID:23548781, locus:2009235; curator_summary=encodes a FtsH protease that is localized to the chloroplast; computational_description=FTSH protease 8 (FTSH8)%3B FUNCTIONS IN: metallopeptidase activity%2C ATP-dependent peptidase activity%2C ATPase activity%2C zinc ion binding%3B INVOLVED IN: PSII associated light-harvesting complex II catabolic process%3B LOCATED IN: thylakoid%2C chloroplast thylakoid membrane%2C chloroplast%2C membrane%2C chloroplast envelope%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase M41%2C FtsH (InterPro:IPR005936)%2C ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C ATPase%2C AAA-type%2C core (InterPro:IPR003959)%2C ATPase%2C AAA-type%2C conserved site (InterPro:IPR003960)%2C Peptidase M41 (InterPro:IPR000642)%2C Peptidase M41%2C FtsH extracellular (InterPro:IPR011546)%3B BEST Arabidopsis thaliana protein match is: FtsH extracellular protease family (TAIR:AT2G30950.1)%3B Has 41562 Blast hits to 39150 proteins in 3282 species: Archae - 1592%3B Bacteria - 17123%3B Metazoa - 4966%3B Fungi - 3846%3B Plants - 3320%3B Viruses - 34%3B Other Eukaryotes - 10681 (source: NCBI BLink).; locus_type=protein_coding
AT1G06430.3	chr1:001960214	0.0	C/1960214-1960564,1960655-1960895,1960970-1961283,1961374-1962525	AT1G06430.3 CDS AT1G06430 ID=AT1G06430.3; Parent=AT1G06430; Name=AT1G06430.3; Note=FTSH protease 8; symbol=FTSH8; full_name=FTSH protease 8; Dbxref=PMID:11299370, PMID:12185496, PMID:11826309, PMID:14630971, PMID:14730085, PMID:14729914, PMID:14996218, PMID:15047901, PMID:15247402, PMID:15235117, PMID:15322131, PMID:16126834, PMID:16157880, PMID:16330762, PMID:16500996, PMID:16972165, PMID:17181860, PMID:17217462, PMID:17432890, PMID:18230142, PMID:18431481, PMID:18633119, PMID:19228339, PMID:20118269, PMID:21062893, PMID:21214651, PMID:22121866, PMID:23548781, locus:2009235; curator_summary=encodes a FtsH protease that is localized to the chloroplast; computational_description=FTSH protease 8 (FTSH8)%3B FUNCTIONS IN: metallopeptidase activity%2C ATP-dependent peptidase activity%2C ATPase activity%2C zinc ion binding%3B INVOLVED IN: PSII associated light-harvesting complex II catabolic process%3B LOCATED IN: thylakoid%2C chloroplast thylakoid membrane%2C chloroplast%2C membrane%2C chloroplast envelope%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase M41%2C FtsH (InterPro:IPR005936)%2C ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C ATPase%2C AAA-type%2C core (InterPro:IPR003959)%2C ATPase%2C AAA-type%2C conserved site (InterPro:IPR003960)%2C Peptidase M41 (InterPro:IPR000642)%2C Peptidase M41%2C FtsH extracellular (InterPro:IPR011546)%3B BEST Arabidopsis thaliana protein match is: FtsH extracellular protease family (TAIR:AT2G30950.1)%3B Has 41562 Blast hits to 39150 proteins in 3282 species: Archae - 1592%3B Bacteria - 17123%3B Metazoa - 4966%3B Fungi - 3846%3B Plants - 3320%3B Viruses - 34%3B Other Eukaryotes - 10681 (source: NCBI BLink).; locus_type=protein_coding
AT1G06440.1	chr1:001963733	0.0	C/1963733-1964905	AT1G06440.1 CDS AT1G06440 ID=AT1G06440.1; Parent=AT1G06440; Name=AT1G06440.1; Note=Ubiquitin carboxyl-terminal hydrolase family protein; conf_class=1; computational_description=Ubiquitin carboxyl-terminal hydrolase family protein%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: shoot apex%2C root%3B CONTAINS InterPro DOMAIN/s: RNA recognition domain%2C plant (InterPro:IPR021099)%3B BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase family protein (TAIR:AT4G33495.1)%3B Has 412 Blast hits to 405 proteins in 17 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 411%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:2009230; locus_type=protein_coding
AT1G06450.1	chr1:001965924	0.0	W/1965924-1967006	AT1G06450.1 CDS AT1G06450 ID=AT1G06450.1; Parent=AT1G06450; Name=AT1G06450.1; Note=Polynucleotidyl transferase%2C ribonuclease H-like superfamily protein; conf_class=1; computational_description=Polynucleotidyl transferase%2C ribonuclease H-like superfamily protein%3B FUNCTIONS IN: ribonuclease activity%2C nucleic acid binding%3B INVOLVED IN: RNA modification%3B LOCATED IN: nucleus%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941)%2C Polynucleotidyl transferase%2C ribonuclease H fold (InterPro:IPR012337)%3B BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase%2C ribonuclease H-like superfamily protein (TAIR:AT3G44240.1)%3B Has 884 Blast hits to 883 proteins in 223 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 252%3B Fungi - 148%3B Plants - 363%3B Viruses - 0%3B Other Eukaryotes - 121 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:18650403, PMID:18775970, PMID:19955262, locus:2009220; locus_type=protein_coding
AT1G04463.1	chr1:001966019	0.0	C/1966019-1966939	AT1G04463.1 antisense_lncRNA AT1G04463 ID=AT1G04463.1; Parent=AT1G04463; Name=AT1G04463.1; description=Natural antisense transcript overlaps with AT1G06450; Note=Natural antisense transcript overlaps with AT1G06450; locus_type=antisense_long_noncoding_rna
AT1G06460.1	chr1:001967308	0.0	C/1967308-1967344,1967603-1967767,1967864-1967978,1968226-1968421,1968512-1968628,1968784-1968906,1969310-1969414	AT1G06460.1 CDS AT1G06460 ID=AT1G06460.1; Parent=AT1G06460; Name=AT1G06460.1; Note=alpha-crystallin domain 32.1; curator_summary=ACD32.1 encodes an alpha-crystallin domain containing protein with homology to small heat shock proteins.; conf_class=2; symbol=ACD32.1; Alias=ACD31.2, ALPHA-CRYSTALLIN DOMAIN 31.2; full_name=alpha-crystallin domain 32.1; computational_description=alpha-crystallin domain 32.1 (ACD32.1)%3B INVOLVED IN: response to heat%3B LOCATED IN: peroxisome%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068)%2C HSP20-like chaperone (InterPro:IPR008978)%3B BEST Arabidopsis thaliana protein match is: heat shock protein 17.6A (TAIR:AT5G12030.1)%3B Has 3590 Blast hits to 3590 proteins in 1004 species: Archae - 36%3B Bacteria - 2284%3B Metazoa - 1%3B Fungi - 156%3B Plants - 751%3B Viruses - 0%3B Other Eukaryotes - 362 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12953064, PMID:15073212, PMID:15333753, PMID:17951448, PMID:18230180, PMID:18218973, PMID:18650403, PMID:18616834, PMID:18710561, PMID:18775970, PMID:18931141, locus:2009205; locus_type=protein_coding
AT1G04467.1	chr1:001968861	0.0	W/1968861-1969332	AT1G04467.1 antisense_lncRNA AT1G04467 ID=AT1G04467.1; Parent=AT1G04467; Name=AT1G04467.1; description=Natural antisense transcript overlaps with AT1G06460; Note=Natural antisense transcript overlaps with AT1G06460; locus_type=antisense_long_noncoding_rna
AT1G06470.1	chr1:001970726	0.0	W/1970726-1970997,1971083-1971252,1971478-1971563,1971672-1971721,1971823-1971890,1972031-1972131,1972267-1972279,1972388-1972572,1972711-1972797,1973223-1973317,1973423-1973540	AT1G06470.1 CDS AT1G06470 ID=AT1G06470.1; Parent=AT1G06470; Name=AT1G06470.1; Note=Nucleotide/sugar transporter family protein; conf_class=2; computational_description=Nucleotide/sugar transporter family protein%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6%2C transmembrane (InterPro:IPR000620)%2C Protein of unknown function DUF250 (InterPro:IPR004853)%3B BEST Arabidopsis thaliana protein match is: Nucleotide-sugar transporter family protein (TAIR:AT5G25400.1)%3B Has 2283 Blast hits to 2278 proteins in 296 species: Archae - 6%3B Bacteria - 116%3B Metazoa - 574%3B Fungi - 390%3B Plants - 969%3B Viruses - 0%3B Other Eukaryotes - 228 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15456736, PMID:11152613, PMID:15546358, PMID:17660356, locus:2009190; locus_type=protein_coding
AT1G06470.2	chr1:001970726	0.0	W/1970726-1970997,1971083-1971252,1971478-1971563,1971672-1971721,1971823-1971890,1972031-1972131,1972267-1972279,1972388-1972572,1972711-1972797,1973223-1973317,1973423-1973540	AT1G06470.2 CDS AT1G06470 ID=AT1G06470.2; Parent=AT1G06470; Name=AT1G06470.2; Note=Nucleotide/sugar transporter family protein; conf_class=2; computational_description=Nucleotide/sugar transporter family protein%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6%2C transmembrane (InterPro:IPR000620)%2C Protein of unknown function DUF250 (InterPro:IPR004853)%3B BEST Arabidopsis thaliana protein match is: Nucleotide-sugar transporter family protein (TAIR:AT5G25400.1)%3B Has 2283 Blast hits to 2278 proteins in 296 species: Archae - 6%3B Bacteria - 116%3B Metazoa - 574%3B Fungi - 390%3B Plants - 969%3B Viruses - 0%3B Other Eukaryotes - 228 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15456736, PMID:11152613, PMID:15546358, PMID:17660356, locus:2009190; locus_type=protein_coding
AT1G06470.3	chr1:001970726	0.0	W/1970726-1970997,1971083-1971252,1971478-1971563,1971672-1971721,1971823-1971890,1972031-1972131,1972267-1972279,1972388-1972572,1972711-1972797,1973223-1973317,1973423-1973540	AT1G06470.3 CDS AT1G06470 ID=AT1G06470.3; Parent=AT1G06470; Name=AT1G06470.3; Note=Nucleotide/sugar transporter family protein; Dbxref=PMID:15456736, PMID:11152613, PMID:15546358, PMID:17660356, locus:2009190; computational_description=Nucleotide/sugar transporter family protein%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6%2C transmembrane (InterPro:IPR000620)%2C Protein of unknown function DUF250 (InterPro:IPR004853)%3B BEST Arabidopsis thaliana protein match is: Nucleotide-sugar transporter family protein (TAIR:AT5G25400.1)%3B Has 2283 Blast hits to 2278 proteins in 296 species: Archae - 6%3B Bacteria - 116%3B Metazoa - 574%3B Fungi - 390%3B Plants - 969%3B Viruses - 0%3B Other Eukaryotes - 228 (source: NCBI BLink).; locus_type=protein_coding
AT1G06470.4	chr1:001970726	0.0	W/1970726-1970997,1971083-1971252,1971478-1971563,1971672-1971721,1971823-1971890,1972031-1972131,1972267-1972279,1972388-1972572,1972711-1972797,1973223-1973317,1973423-1973540	AT1G06470.4 CDS AT1G06470 ID=AT1G06470.4; Parent=AT1G06470; Name=AT1G06470.4; Note=Nucleotide/sugar transporter family protein; Dbxref=PMID:15456736, PMID:11152613, PMID:15546358, PMID:17660356, locus:2009190; computational_description=Nucleotide/sugar transporter family protein%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6%2C transmembrane (InterPro:IPR000620)%2C Protein of unknown function DUF250 (InterPro:IPR004853)%3B BEST Arabidopsis thaliana protein match is: Nucleotide-sugar transporter family protein (TAIR:AT5G25400.1)%3B Has 2283 Blast hits to 2278 proteins in 296 species: Archae - 6%3B Bacteria - 116%3B Metazoa - 574%3B Fungi - 390%3B Plants - 969%3B Viruses - 0%3B Other Eukaryotes - 228 (source: NCBI BLink).; locus_type=protein_coding
AT1G06475.1	chr1:001973992	0.0	C/1973992-1974273	AT1G06475.1 CDS AT1G06475 ID=AT1G06475.1; Parent=AT1G06475; Name=AT1G06475.1; Note=transmembrane protein; conf_class=1; computational_description=unknown protein%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11152613, locus:1006230677; locus_type=protein_coding
AT1TE06460	chr1:001974796	0.0	C/1974796-1974853	AT1TE06460 transposable_element AT1TE06460 ID=AT1TE06460; Name=AT1TE06460; Alias=HELITRONY1C
AT1TE06465	chr1:001974854	0.0	W/1974854-1975397	AT1TE06465 transposable_element AT1TE06465 ID=AT1TE06465; Name=AT1TE06465; Alias=ATREP5
AT1TE06470	chr1:001975442	0.0	W/1975442-1976072	AT1TE06470 transposable_element AT1TE06470 ID=AT1TE06470; Name=AT1TE06470; Alias=ATHATN7
AT1TE06475	chr1:001976073	0.0	C/1976073-1976109	AT1TE06475 transposable_element AT1TE06475 ID=AT1TE06475; Name=AT1TE06475; Alias=ATREP10D
AT1TE06480	chr1:001976110	0.0	C/1976110-1977174	AT1TE06480 transposable_element AT1TE06480 ID=AT1TE06480; Name=AT1TE06480; Alias=ATREP3
AT1TE06485	chr1:001977175	0.0	W/1977175-1977358	AT1TE06485 transposable_element AT1TE06485 ID=AT1TE06485; Name=AT1TE06485; Alias=ATREP4
AT1G06480.1	chr1:001978084	0.0	W/1978084-1978157	AT1G06480.1 tRNA AT1G06480 ID=AT1G06480.1; Parent=AT1G06480; Note=tRNA-Ile; computational_description=tRNA-Ile (anticodon: AAT); Dbxref=PMID:8980477, PMID:23066098, PMID:8980477, locus:3686358; Name=AT1G06480.1; locus_type=pre_trna
AT1G06490.1	chr1:001978762	0.0	W/1978762-1978996,1979085-1979185,1979322-1979434,1979531-1979618,1979708-1979818,1979898-1980050,1980146-1980235,1980312-1980403,1980528-1980651,1980812-1980946,1981033-1981109,1981190-1981280,1981454-1981576,1981659-1981776,1981858-1982242,1982478-1982538,1982763-1982844,1982926-1982975,1983046-1983132,1983257-1983361,1983454-1983548,1983648-1983729,1983814-1983977,1984079-1984202,1984307-1984407,1984559-1984670,1984750-1984901,1985074-1985183,1985260-1985379,1985459-1985527,1985689-1985878,1985959-1986070,1986231-1986353,1986428-1986546,1986644-1986727,1986914-1987026,1987105-1987334,1987436-1988233,1988320-1988370,1988525-1988710,1988801-1989045,1989220-1989295	AT1G06490.1 CDS AT1G06490 ID=AT1G06490.1; Parent=AT1G06490; Name=AT1G06490.1; Note=glucan synthase-like 7; curator_summary=Encodes Callose Synthase 7 (CalS7)%2C a phloem-specific callose synthase responsible for callose deposition in developing sieve elements during phloem formation and in mature phloem induced by wounding.; conf_class=6; symbol=CalS7; Alias=ATGSL07, Arabidopsis thaliana glucan synthase-like 7, GSL07, glucan synthase-like 7, GSL7, glucan synthase-like 7, atgsl7, gsl07; full_name=callose synthase 7; computational_description=glucan synthase-like 7 (GSL07)%3B FUNCTIONS IN: transferase activity%2C transferring glycosyl groups%2C 1%2C3-beta-glucan synthase activity%3B INVOLVED IN: 1%2C3-beta-glucan biosynthetic process%3B LOCATED IN: 1%2C3-beta-glucan synthase complex%2C membrane%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Glycosyl transferase%2C family 48 (InterPro:IPR003440)%3B BEST Arabidopsis thaliana protein match is: glucan synthase-like 11 (TAIR:AT3G59100.1)%3B Has 1279 Blast hits to 924 proteins in 155 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 9%3B Fungi - 711%3B Plants - 489%3B Viruses - 0%3B Other Eukaryotes - 68 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:15235117, PMID:20736450, PMID:21098675, PMID:21175885, PMID:21451254, PMID:21116665, PMID:22172675, locus:2009185; locus_type=protein_coding
AT1G06490.2	chr1:001978762	0.0	W/1978762-1978996,1979085-1979185,1979322-1979434,1979531-1979618,1979708-1979818,1979898-1980050,1980146-1980235,1980312-1980403,1980528-1980651,1980812-1980946,1981033-1981109,1981190-1981280,1981454-1981576,1981659-1981776,1981858-1982242,1982478-1982538,1982763-1982844,1982926-1982975,1983046-1983132,1983257-1983361,1983454-1983548,1983648-1983729,1983814-1983977,1984079-1984202,1984307-1984407,1984559-1984670,1984750-1984901,1985074-1985183,1985260-1985379,1985459-1985527,1985689-1985878,1985959-1986070,1986231-1986353,1986428-1986546,1986644-1986727,1986914-1987026,1987105-1987334,1987436-1988233,1988320-1988370,1988525-1988710,1988801-1989046	AT1G06490.2 CDS AT1G06490 ID=AT1G06490.2; Parent=AT1G06490; Name=AT1G06490.2; Note=glucan synthase-like 7; symbol=CalS7; Alias=ATGSL07, Arabidopsis thaliana glucan synthase-like 7, GSL07, glucan synthase-like 7, GSL7, glucan synthase-like 7, atgsl7, gsl07; full_name=callose synthase 7; curator_summary=Encodes Callose Synthase 7 (CalS7)%2C a phloem-specific callose synthase responsible for callose deposition in developing sieve elements during phloem formation and in mature phloem induced by wounding.; computational_description=glucan synthase-like 7 (GSL07)%3B FUNCTIONS IN: transferase activity%2C transferring glycosyl groups%2C 1%2C3-beta-glucan synthase activity%3B INVOLVED IN: 1%2C3-beta-glucan biosynthetic process%3B LOCATED IN: 1%2C3-beta-glucan synthase complex%2C membrane%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Glycosyl transferase%2C family 48 (InterPro:IPR003440)%3B BEST Arabidopsis thaliana protein match is: glucan synthase-like 11 (TAIR:AT3G59100.1)%3B Has 1279 Blast hits to 924 proteins in 155 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 9%3B Fungi - 711%3B Plants - 489%3B Viruses - 0%3B Other Eukaryotes - 68 (source: NCBI BLink).; Dbxref=PMID:15235117, PMID:20736450, PMID:21098675, PMID:21175885, PMID:21451254, PMID:21116665, PMID:22172675, locus:2009185; locus_type=protein_coding
AT1G04473.1	chr1:001989682	0.0	C/1989682-1990158	AT1G04473.1 antisense_lncRNA AT1G04473 ID=AT1G04473.1; Parent=AT1G04473; Name=AT1G04473.1; description=Natural antisense transcript overlaps with AT1G06500; Note=Natural antisense transcript overlaps with AT1G06500; locus_type=antisense_long_noncoding_rna
AT1G06500.1	chr1:001990176	0.0	W/1990176-1990586	AT1G06500.1 CDS AT1G06500 ID=AT1G06500.1; Parent=AT1G06500; Name=AT1G06500.1; Note=hypothetical protein; conf_class=2; computational_description=unknown protein%3B Has 25 Blast hits to 25 proteins in 10 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 25%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2009145; locus_type=protein_coding
AT1G06500.2	chr1:001990176	0.0	W/1990176-1990586	AT1G06500.2 CDS AT1G06500 ID=AT1G06500.2; Parent=AT1G06500; Name=AT1G06500.2; Note=hypothetical protein; conf_class=2; computational_description=unknown protein%3B Has 25 Blast hits to 25 proteins in 10 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 25%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2009145; locus_type=protein_coding
AT1G06500.3	chr1:001990176	0.0	W/1990176-1990586	AT1G06500.3 CDS AT1G06500 ID=AT1G06500.3; Parent=AT1G06500; Name=AT1G06500.3; Note=hypothetical protein; conf_class=2; computational_description=unknown protein%3B Has 25 Blast hits to 25 proteins in 10 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 25%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2009145; locus_type=protein_coding
AT1G06500.4	chr1:001990176	0.0	W/1990176-1990586	AT1G06500.4 CDS AT1G06500 ID=AT1G06500.4; Parent=AT1G06500; Name=AT1G06500.4; Note=hypothetical protein; conf_class=2; computational_description=unknown protein%3B Has 25 Blast hits to 25 proteins in 10 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 25%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2009145; locus_type=protein_coding
AT1G06515.1	chr1:001990951	0.0	C/1990951-1990963,1991443-1991515,1991884-1991968	AT1G06515.1 CDS AT1G06515 ID=AT1G06515.1; Parent=AT1G06515; Name=AT1G06515.1; Note=transmembrane protein%2C putative (DUF3317); conf_class=2; computational_description=Protein of unknown function (DUF3317)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: mitochondrion%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3317) (TAIR:AT2G30942.1)%3B Has 64 Blast hits to 64 proteins in 18 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 13%3B Plants - 51%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:4010713417; locus_type=protein_coding
AT1G06515.2	chr1:001990951	0.0	C/1990951-1990963,1991443-1991515,1991884-1991968	AT1G06515.2 CDS AT1G06515 ID=AT1G06515.2; Parent=AT1G06515; Name=AT1G06515.2; Note=transmembrane protein%2C putative (DUF3317); conf_class=2; computational_description=Protein of unknown function (DUF3317)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: mitochondrion%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3317) (TAIR:AT2G30942.1)%3B Has 64 Blast hits to 64 proteins in 18 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 13%3B Plants - 51%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:4010713417; locus_type=protein_coding
AT1G04477.1	chr1:001991587	0.0	W/1991587-1991970	AT1G04477.1 antisense_lncRNA AT1G04477 ID=AT1G04477.1; Parent=AT1G04477; Name=AT1G04477.1; description=Natural antisense transcript overlaps with AT1G06515; Note=Natural antisense transcript overlaps with AT1G06515; locus_type=antisense_long_noncoding_rna
AT1G06510.1	chr1:001992389	0.0	W/1992389-1992545,1992707-1992906,1993024-1993460,1993544-1993583	AT1G06510.1 CDS AT1G06510 ID=AT1G06510.1; Parent=AT1G06510; Name=AT1G06510.1; Note=forkhead-associated domain protein; conf_class=2; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B Has 376 Blast hits to 369 proteins in 152 species: Archae - 5%3B Bacteria - 113%3B Metazoa - 105%3B Fungi - 46%3B Plants - 27%3B Viruses - 2%3B Other Eukaryotes - 78 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:15272873, PMID:21365755, locus:2009135; locus_type=protein_coding
AT1G06520.1	chr1:001994170	0.0	C/1994170-1995039,1995180-1996067	AT1G06520.1 CDS AT1G06520 ID=AT1G06520.1; Parent=AT1G06520; Name=AT1G06520.1; Note=glycerol-3-phosphate acyltransferase 1; curator_summary=sn-glycerol-3-phosphate 2-O-acyltransferase. Expressed in flower buds and siliques. Homozygous mutant plants are male sterile.; conf_class=2; symbol=GPAT1; Alias=ATGPAT1, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 1, sn-2-GPAT1, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 1; full_name=GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 1; computational_description=glycerol-3-phosphate acyltransferase 1 (GPAT1)%3B CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123)%3B BEST Arabidopsis thaliana protein match is: glycerol-3-phosphate acyltransferase 2 (TAIR:AT1G02390.1)%3B Has 381 Blast hits to 368 proteins in 28 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 8%3B Fungi - 0%3B Plants - 362%3B Viruses - 0%3B Other Eukaryotes - 5 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12805597, PMID:12897259, PMID:16951057, PMID:17259262, PMID:17411438, PMID:20351290, PMID:21746699, PMID:22864585, PMID:23505340, locus:2009225; locus_type=protein_coding
AT1G06530.1	chr1:002001625	0.0	W/2001625-2002596	AT1G06530.1 CDS AT1G06530 ID=AT1G06530.1; Parent=AT1G06530; Name=AT1G06530.1; Note=Tropomyosin-like protein; curator_summary=Encodes PEROXISOMAL AND MITOCHONDRIAL DIVISION FACTOR2. Involved in mitochondrial morphogenesis.; conf_class=1; symbol=PMD2; full_name=peroxisomal and mitochondrial division factor 2; computational_description=Tropomyosin-related%3B LOCATED IN: mitochondrion%2C plasma membrane%2C plastid%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 14 growth stages%3B BEST Arabidopsis thaliana protein match is: Tropomyosin-related (TAIR:AT3G58840.2)%3B Has 146608 Blast hits to 68961 proteins in 3334 species: Archae - 2609%3B Bacteria - 25073%3B Metazoa - 65463%3B Fungi - 13367%3B Plants - 8726%3B Viruses - 553%3B Other Eukaryotes - 30817 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11743115, PMID:14671022, PMID:16618929, PMID:20118269, PMID:20687615, PMID:21284606, PMID:21896887, PMID:22147290, locus:2009215; locus_type=protein_coding
AT1TE06560	chr1:002002044	0.0	C/2002044-2002241	AT1TE06560 transposable_element AT1TE06560 ID=AT1TE06560; Name=AT1TE06560; Alias=VANDAL17
AT1G06540.1	chr1:002002908	0.0	C/2002908-2003003,2003112-2003393	AT1G06540.1 CDS AT1G06540 ID=AT1G06540.1; Parent=AT1G06540; Name=AT1G06540.1; Note=hypothetical protein; conf_class=1; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30930.1)%3B Has 16 Blast hits to 16 proteins in 3 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 16%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:18775970, PMID:23791732, locus:2009195; locus_type=protein_coding
AT1G06550.1	chr1:002003834	0.0	C/2003834-2003882,2003988-2004097,2004193-2004234,2004350-2004451,2004688-2004786,2004867-2004927,2005049-2005170,2005386-2005471,2005550-2005634,2005724-2005807,2005887-2005960,2006053-2006116,2006196-2006264,2006351-2006434,2006532-2006564	AT1G06550.1 CDS AT1G06550 ID=AT1G06550.1; Parent=AT1G06550; Name=AT1G06550.1; Note=ATP-dependent caseinolytic (Clp) protease/crotonase family protein; conf_class=2; computational_description=ATP-dependent caseinolytic (Clp) protease/crotonase family protein%3B FUNCTIONS IN: 3-hydroxyisobutyryl-CoA hydrolase activity%2C catalytic activity%3B INVOLVED IN: response to karrikin%2C fatty acid beta-oxidation%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Crotonase%2C core (InterPro:IPR001753)%3B BEST Arabidopsis thaliana protein match is: beta-hydroxyisobutyryl-CoA hydrolase 1 (TAIR:AT5G65940.1)%3B Has 26566 Blast hits to 26556 proteins in 2155 species: Archae - 406%3B Bacteria - 18031%3B Metazoa - 1157%3B Fungi - 686%3B Plants - 463%3B Viruses - 0%3B Other Eukaryotes - 5823 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15333753, PMID:18650403, PMID:18757557, PMID:20351290, PMID:22253603, locus:2009180; locus_type=protein_coding
AT1G06560.1	chr1:002007660	0.0	W/2007660-2007898,2008186-2008474,2008723-2008870,2009261-2009398,2009497-2009559,2009726-2009847,2010017-2010248,2010559-2010770,2011087-2011187,2011354-2011435,2011539-2011600,2011713-2011824	AT1G06560.1 CDS AT1G06560 ID=AT1G06560.1; Parent=AT1G06560; Name=AT1G06560.1; Note=NOL1/NOP2/sun family protein; conf_class=2; computational_description=NOL1/NOP2/sun family protein%3B FUNCTIONS IN: methyltransferase activity%2C RNA binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678)%2C Pseudouridine synthase/archaeosine transglycosylase-like (InterPro:IPR015947)%2C Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p%2C conserved site (InterPro:IPR018314)%2C Pseudouridine synthase/archaeosine transglycosylase (InterPro:IPR002478)%3B BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G26600.1)%3B Has 13569 Blast hits to 8411 proteins in 2331 species: Archae - 604%3B Bacteria - 9970%3B Metazoa - 826%3B Fungi - 418%3B Plants - 360%3B Viruses - 0%3B Other Eukaryotes - 1391 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, locus:2009170; locus_type=protein_coding
AT1G04483.1	chr1:002010883	0.0	C/2010883-2011109	AT1G04483.1 antisense_lncRNA AT1G04483 ID=AT1G04483.1; Parent=AT1G04483; Name=AT1G04483.1; description=Natural antisense transcript overlaps with AT1G06560; Note=Natural antisense transcript overlaps with AT1G06560; locus_type=antisense_long_noncoding_rna
AT1G06570.1	chr1:002012015	0.0	C/2012015-2012189,2012297-2013459	AT1G06570.1 CDS AT1G06570 ID=AT1G06570.1; Parent=AT1G06570; Name=AT1G06570.1; Note=4-hydroxyphenylpyruvate dioxygenase; curator_summary=Mutation of the PDS1 locus disrupts the activity of p-hydroxyphenylpyruvate dioxygenase (HPPDase)%2C the first committed step in the synthesis of both plastoquinone and tocopherols in plants.; conf_class=2; symbol=PDS1; Alias=HPD, 4-hydroxyphenylpyruvate dioxygenase, HPPD, 4-hydroxyphenylpyruvate dioxygenase; full_name=phytoene desaturation 1; computational_description=phytoene desaturation 1 (PDS1)%3B CONTAINS InterPro DOMAIN/s: 4-hydroxyphenylpyruvate dioxygenase (InterPro:IPR005956)%2C Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360)%3B Has 2414 Blast hits to 2412 proteins in 817 species: Archae - 3%3B Bacteria - 1671%3B Metazoa - 206%3B Fungi - 158%3B Plants - 88%3B Viruses - 0%3B Other Eukaryotes - 288 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10198110, PMID:9701587, PMID:8718624, PMID:11455642, PMID:12021299, PMID:14671022, PMID:16290217, PMID:18650403, PMID:18810749, PMID:21333657, PMID:21613226, PMID:22361804, PMID:23148892, PMID:23137278, locus:2009160; locus_type=protein_coding
AT1G06570.2	chr1:002012173	0.0	C/2012173-2012189,2012304-2013543	AT1G06570.2 CDS AT1G06570 ID=AT1G06570.2; Parent=AT1G06570; Name=AT1G06570.2; Note=4-hydroxyphenylpyruvate dioxygenase; curator_summary=Mutation of the PDS1 locus disrupts the activity of p-hydroxyphenylpyruvate dioxygenase (HPPDase)%2C the first committed step in the synthesis of both plastoquinone and tocopherols in plants.; conf_class=2; symbol=PDS1; Alias=HPD, 4-hydroxyphenylpyruvate dioxygenase, HPPD, 4-hydroxyphenylpyruvate dioxygenase; full_name=phytoene desaturation 1; computational_description=phytoene desaturation 1 (PDS1)%3B CONTAINS InterPro DOMAIN/s: 4-hydroxyphenylpyruvate dioxygenase (InterPro:IPR005956)%2C Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360)%3B Has 2414 Blast hits to 2412 proteins in 817 species: Archae - 3%3B Bacteria - 1671%3B Metazoa - 206%3B Fungi - 158%3B Plants - 88%3B Viruses - 0%3B Other Eukaryotes - 288 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10198110, PMID:9701587, PMID:8718624, PMID:11455642, PMID:12021299, PMID:14671022, PMID:16290217, PMID:18650403, PMID:18810749, PMID:21333657, PMID:21613226, PMID:22361804, PMID:23148892, PMID:23137278, locus:2009160; locus_type=protein_coding
AT1G06580.1	chr1:002014440	0.0	C/2014440-2015942	AT1G06580.1 CDS AT1G06580 ID=AT1G06580.1; Parent=AT1G06580; Name=AT1G06580.1; Note=Pentatricopeptide repeat (PPR) superfamily protein; conf_class=1; Alias=PPR1, pentatricopeptide repeat 1; computational_description=Pentatricopeptide repeat (PPR) superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G64580.1)%3B Has 57463 Blast hits to 14556 proteins in 285 species: Archae - 4%3B Bacteria - 52%3B Metazoa - 759%3B Fungi - 693%3B Plants - 54152%3B Viruses - 0%3B Other Eukaryotes - 1803 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14972688, PMID:15131082, PMID:15258262, PMID:15632092, PMID:15565108, PMID:17400893, PMID:25008976, locus:2009155; locus_type=protein_coding
AT1G06580.2	chr1:002014440	0.0	C/2014440-2015624	AT1G06580.2 CDS AT1G06580 ID=AT1G06580.2; Parent=AT1G06580; Name=AT1G06580.2; Note=Pentatricopeptide repeat (PPR) superfamily protein; Alias=PPR1, pentatricopeptide repeat 1; computational_description=Pentatricopeptide repeat (PPR) superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G64580.1)%3B Has 57463 Blast hits to 14556 proteins in 285 species: Archae - 4%3B Bacteria - 52%3B Metazoa - 759%3B Fungi - 693%3B Plants - 54152%3B Viruses - 0%3B Other Eukaryotes - 1803 (source: NCBI BLink).; Dbxref=PMID:14972688, PMID:15131082, PMID:15258262, PMID:15632092, PMID:15565108, PMID:17400893, PMID:25008976, locus:2009155; locus_type=protein_coding
AT1G06580.3	chr1:002014440	0.0	C/2014440-2015624	AT1G06580.3 CDS AT1G06580 ID=AT1G06580.3; Parent=AT1G06580; Name=AT1G06580.3; Note=Pentatricopeptide repeat (PPR) superfamily protein; Alias=PPR1, pentatricopeptide repeat 1; computational_description=Pentatricopeptide repeat (PPR) superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G64580.1)%3B Has 57463 Blast hits to 14556 proteins in 285 species: Archae - 4%3B Bacteria - 52%3B Metazoa - 759%3B Fungi - 693%3B Plants - 54152%3B Viruses - 0%3B Other Eukaryotes - 1803 (source: NCBI BLink).; Dbxref=PMID:14972688, PMID:15131082, PMID:15258262, PMID:15632092, PMID:15565108, PMID:17400893, PMID:25008976, locus:2009155; locus_type=protein_coding
AT1G06590.1	chr1:002016504	0.0	C/2016504-2016656,2016929-2016996,2017124-2017388,2017690-2017788,2017911-2018052,2018241-2018346,2018652-2018719,2018871-2018930,2019683-2019945,2020029-2020106,2020749-2020997,2021373-2021405,2021777-2021906,2022094-2022179,2022278-2022362,2022453-2022630,2023050-2023284,2023656-2023777,2023863-2024022,2024335-2024505	AT1G06590.1 CDS AT1G06590 ID=AT1G06590.1; Parent=AT1G06590; Name=AT1G06590.1; Note=anaphase-promoting complex subunit; conf_class=1; computational_description=unknown protein%3B Has 380 Blast hits to 268 proteins in 109 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 245%3B Fungi - 73%3B Plants - 49%3B Viruses - 0%3B Other Eukaryotes - 13 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12597875, PMID:16290217, locus:2009150; locus_type=protein_coding
AT1G06610.1	chr1:002025356	0.0	W/2025356-2025428	AT1G06610.1 tRNA AT1G06610 ID=AT1G06610.1; Parent=AT1G06610; Note=tRNA-Ala; computational_description=tRNA-Ala (anticodon: AGC); Dbxref=PMID:8980477, PMID:23066098, PMID:8980477, locus:3686361; Name=AT1G06610.1; locus_type=pre_trna
AT1G06620.1	chr1:002025618	0.0	W/2025618-2026141,2026434-2026755,2026843-2027094	AT1G06620.1 CDS AT1G06620 ID=AT1G06620.1; Parent=AT1G06620; Name=AT1G06620.1; Note=2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; curator_summary=encodes a protein whose sequence is similar to a 2-oxoglutarate-dependent dioxygenase; conf_class=2; computational_description=2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein%3B CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123)%3B BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT3G61400.1)%3B Has 8339 Blast hits to 8299 proteins in 1003 species: Archae - 0%3B Bacteria - 1128%3B Metazoa - 122%3B Fungi - 867%3B Plants - 4923%3B Viruses - 0%3B Other Eukaryotes - 1299 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12805628, PMID:15235117, PMID:16367961, PMID:16972869, PMID:20736450, locus:2009130; locus_type=protein_coding
AT1G06620.2	chr1:002025618	0.0	W/2025618-2026141,2026434-2026764	AT1G06620.2 CDS AT1G06620 ID=AT1G06620.2; Parent=AT1G06620; Name=AT1G06620.2; Note=2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; curator_summary=encodes a protein whose sequence is similar to a 2-oxoglutarate-dependent dioxygenase; computational_description=2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein%3B CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123)%3B BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT3G61400.1)%3B Has 8339 Blast hits to 8299 proteins in 1003 species: Archae - 0%3B Bacteria - 1128%3B Metazoa - 122%3B Fungi - 867%3B Plants - 4923%3B Viruses - 0%3B Other Eukaryotes - 1299 (source: NCBI BLink).; Dbxref=PMID:12805628, PMID:15235117, PMID:16367961, PMID:16972869, PMID:20736450, locus:2009130; locus_type=protein_coding
AT1G06630.9	chr1:002028044	0.0	W/2028044-2028976,2029050-2029199,2029287-2029442	AT1G06630.9 CDS AT1G06630 ID=AT1G06630.9; Parent=AT1G06630; Name=AT1G06630.9; Note=F-box/RNI-like superfamily protein; computational_description=F-box/RNI-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%3B BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G60040.1)%3B Has 1823 Blast hits to 1784 proteins in 27 species: Archae - 2%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1819%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; Dbxref=PMID:15937229, PMID:18650403, locus:2009125; locus_type=protein_coding
AT1G06630.1	chr1:002028071	0.0	W/2028071-2028976,2029050-2029199,2029287-2029376,2030003-2030207,2031091-2031173	AT1G06630.1 CDS AT1G06630 ID=AT1G06630.1; Parent=AT1G06630; Name=AT1G06630.1; Note=F-box/RNI-like superfamily protein; conf_class=3; computational_description=F-box/RNI-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%3B BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G60040.1)%3B Has 1823 Blast hits to 1784 proteins in 27 species: Archae - 2%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1819%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15937229, PMID:18650403, locus:2009125; locus_type=protein_coding
AT1G06630.2	chr1:002028071	0.0	W/2028071-2028976,2029050-2029199,2029287-2029442	AT1G06630.2 CDS AT1G06630 ID=AT1G06630.2; Parent=AT1G06630; Name=AT1G06630.2; Note=F-box/RNI-like superfamily protein; conf_class=2; computational_description=F-box/RNI-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%3B BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G60040.1)%3B Has 1823 Blast hits to 1784 proteins in 27 species: Archae - 2%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1819%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15937229, PMID:18650403, locus:2009125; locus_type=protein_coding
AT1G06630.3	chr1:002028071	0.0	W/2028071-2028976,2029050-2029199,2029287-2029442	AT1G06630.3 CDS AT1G06630 ID=AT1G06630.3; Parent=AT1G06630; Name=AT1G06630.3; Note=F-box/RNI-like superfamily protein; conf_class=6; computational_description=F-box/RNI-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%3B BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G60040.1)%3B Has 1823 Blast hits to 1784 proteins in 27 species: Archae - 2%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1819%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:15937229, PMID:18650403, locus:2009125; locus_type=protein_coding
AT1G06630.4	chr1:002028071	0.0	W/2028071-2028976,2029050-2029199,2029287-2029442	AT1G06630.4 CDS AT1G06630 ID=AT1G06630.4; Parent=AT1G06630; Name=AT1G06630.4; Note=F-box/RNI-like superfamily protein; Dbxref=PMID:15937229, PMID:18650403, locus:2009125; computational_description=F-box/RNI-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%3B BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G60040.1)%3B Has 1823 Blast hits to 1784 proteins in 27 species: Archae - 2%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1819%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; locus_type=protein_coding
AT1G06630.5	chr1:002028071	0.0	W/2028071-2028976,2029050-2029214	AT1G06630.5 CDS AT1G06630 ID=AT1G06630.5; Parent=AT1G06630; Name=AT1G06630.5; Note=F-box/RNI-like superfamily protein; computational_description=F-box/RNI-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%3B BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G60040.1)%3B Has 1823 Blast hits to 1784 proteins in 27 species: Archae - 2%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1819%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; Dbxref=PMID:15937229, PMID:18650403, locus:2009125; locus_type=protein_coding
AT1G06630.6	chr1:002028071	0.0	W/2028071-2028976,2029050-2029199,2029287-2029442	AT1G06630.6 CDS AT1G06630 ID=AT1G06630.6; Parent=AT1G06630; Name=AT1G06630.6; Note=F-box/RNI-like superfamily protein; Dbxref=PMID:15937229, PMID:18650403, locus:2009125; computational_description=F-box/RNI-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%3B BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G60040.1)%3B Has 1823 Blast hits to 1784 proteins in 27 species: Archae - 2%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1819%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; locus_type=protein_coding
AT1G06630.7	chr1:002028071	0.0	W/2028071-2028985	AT1G06630.7 CDS AT1G06630 ID=AT1G06630.7; Parent=AT1G06630; Name=AT1G06630.7; Note=F-box/RNI-like superfamily protein; computational_description=F-box/RNI-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%3B BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G60040.1)%3B Has 1823 Blast hits to 1784 proteins in 27 species: Archae - 2%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1819%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; Dbxref=PMID:15937229, PMID:18650403, locus:2009125; locus_type=protein_coding
AT1G06630.8	chr1:002028071	0.0	W/2028071-2028976,2029050-2029214	AT1G06630.8 CDS AT1G06630 ID=AT1G06630.8; Parent=AT1G06630; Name=AT1G06630.8; Note=F-box/RNI-like superfamily protein; computational_description=F-box/RNI-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%3B BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G60040.1)%3B Has 1823 Blast hits to 1784 proteins in 27 species: Archae - 2%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1819%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; Dbxref=PMID:15937229, PMID:18650403, locus:2009125; locus_type=protein_coding
AT1TE06650	chr1:002029752	0.0	W/2029752-2030019,2030716-2031203,2031471-2031696	AT1TE06650 transposable_element AT1TE06650 ID=AT1TE06650; Name=AT1TE06650; Alias=ATIS112A
AT1TE06655	chr1:002030569	0.0	W/2030569-2030715	AT1TE06655 transposable_element AT1TE06655 ID=AT1TE06655; Name=AT1TE06655; Alias=ATIS112A
AT1G06640.1	chr1:002032366	0.0	W/2032366-2032898,2033070-2033391,2033521-2033775	AT1G06640.1 CDS AT1G06640 ID=AT1G06640.1; Parent=AT1G06640; Name=AT1G06640.1; Note=2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; curator_summary=encodes a protein whose sequence is similar to a 2-oxoglutarate-dependent dioxygenase; conf_class=2; computational_description=2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein%3B CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123)%3B BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G06650.2)%3B Has 8123 Blast hits to 8085 proteins in 990 species: Archae - 0%3B Bacteria - 1087%3B Metazoa - 116%3B Fungi - 743%3B Plants - 4881%3B Viruses - 0%3B Other Eukaryotes - 1296 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14682612, PMID:15272873, PMID:15634198, PMID:16489130, PMID:17587374, PMID:18650403, PMID:18805951, PMID:22487254, locus:2009210; locus_type=protein_coding
AT1G06640.2	chr1:002032366	0.0	W/2032366-2032898,2033070-2033505	AT1G06640.2 CDS AT1G06640 ID=AT1G06640.2; Parent=AT1G06640; Name=AT1G06640.2; Note=2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; curator_summary=encodes a protein whose sequence is similar to a 2-oxoglutarate-dependent dioxygenase; conf_class=2; computational_description=2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein%3B CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123)%3B BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G06650.2)%3B Has 8123 Blast hits to 8085 proteins in 990 species: Archae - 0%3B Bacteria - 1087%3B Metazoa - 116%3B Fungi - 743%3B Plants - 4881%3B Viruses - 0%3B Other Eukaryotes - 1296 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14682612, PMID:15272873, PMID:15634198, PMID:16489130, PMID:17587374, PMID:18650403, PMID:18805951, PMID:22487254, locus:2009210; locus_type=protein_coding
AT1G06640.3	chr1:002032366	0.0	W/2032366-2032898,2033070-2033385,2033516-2033527	AT1G06640.3 CDS AT1G06640 ID=AT1G06640.3; Parent=AT1G06640; Name=AT1G06640.3; Note=2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; curator_summary=encodes a protein whose sequence is similar to a 2-oxoglutarate-dependent dioxygenase; conf_class=2; computational_description=2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein%3B CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123)%3B BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G06650.2)%3B Has 8123 Blast hits to 8085 proteins in 990 species: Archae - 0%3B Bacteria - 1087%3B Metazoa - 116%3B Fungi - 743%3B Plants - 4881%3B Viruses - 0%3B Other Eukaryotes - 1296 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14682612, PMID:15272873, PMID:15634198, PMID:16489130, PMID:17587374, PMID:18650403, PMID:18805951, PMID:22487254, locus:2009210; locus_type=protein_coding
AT1G06645.1	chr1:002034190	0.0	W/2034190-2034752,2034824-2035145,2035245-2035499	AT1G06645.1 CDS AT1G06645 ID=AT1G06645.1; Parent=AT1G06645; Name=AT1G06645.1; Note=2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; conf_class=6; computational_description=2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein%3B FUNCTIONS IN: oxidoreductase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123)%3B BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G06650.2)%3B Has 8054 Blast hits to 8023 proteins in 983 species: Archae - 0%3B Bacteria - 1064%3B Metazoa - 113%3B Fungi - 730%3B Plants - 4890%3B Viruses - 0%3B Other Eukaryotes - 1257 (source: NCBI BLink).; conf_rating=**; Dbxref=locus:2824199; locus_type=protein_coding
AT1G04487.1	chr1:002035718	0.0	C/2035718-2036257	AT1G04487.1 antisense_lncRNA AT1G04487 ID=AT1G04487.1; Parent=AT1G04487; Name=AT1G04487.1; description=Natural antisense transcript overlaps with AT1G06650; Note=Natural antisense transcript overlaps with AT1G06650; locus_type=antisense_long_noncoding_rna
AT1G06650.1	chr1:002035909	0.0	W/2035909-2036441,2036520-2036841,2036958-2037047	AT1G06650.1 CDS AT1G06650 ID=AT1G06650.1; Parent=AT1G06650; Name=AT1G06650.1; Note=2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; curator_summary=encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase; conf_class=2; computational_description=2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein%3B CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123)%3B BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G06640.1)%3B Has 7290 Blast hits to 7263 proteins in 928 species: Archae - 0%3B Bacteria - 977%3B Metazoa - 84%3B Fungi - 531%3B Plants - 4672%3B Viruses - 0%3B Other Eukaryotes - 1026 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16500996, PMID:18650403, PMID:18805951, PMID:18826618, locus:2009175; locus_type=protein_coding
AT1G06650.2	chr1:002035909	0.0	W/2035909-2036441,2036520-2036841,2036932-2037186	AT1G06650.2 CDS AT1G06650 ID=AT1G06650.2; Parent=AT1G06650; Name=AT1G06650.2; Note=2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; curator_summary=encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase; conf_class=2; computational_description=2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein%3B CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123)%3B BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G06640.1)%3B Has 7290 Blast hits to 7263 proteins in 928 species: Archae - 0%3B Bacteria - 977%3B Metazoa - 84%3B Fungi - 531%3B Plants - 4672%3B Viruses - 0%3B Other Eukaryotes - 1026 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16500996, PMID:18650403, PMID:18805951, PMID:18826618, locus:2009175; locus_type=protein_coding
AT1G06660.1	chr1:002037461	0.0	C/2037461-2037554,2037639-2037730,2037809-2038544,2038723-2038943,2039500-2039582,2039687-2039735,2039978-2040148	AT1G06660.1 CDS AT1G06660 ID=AT1G06660.1; Parent=AT1G06660; Name=AT1G06660.1; Note=aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit; curator_summary=Encodes JASON. jason mutant produces diploid male gametes leading to triploid progeny. Diploid gametes in the jason mutant are generated by a defect in male meiosis II.; conf_class=2; symbol=JASON; full_name=JASON; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30820.2)%3B Has 166 Blast hits to 144 proteins in 35 species: Archae - 0%3B Bacteria - 17%3B Metazoa - 13%3B Fungi - 20%3B Plants - 104%3B Viruses - 0%3B Other Eukaryotes - 12 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:20032078, PMID:21257792, PMID:24012484, locus:2009165; locus_type=protein_coding
AT1G06670.1	chr1:002040567	0.0	W/2040567-2040669,2040881-2040971,2041075-2041507,2041630-2041704,2041838-2041882,2042220-2042313,2042424-2042482,2042581-2042706,2042962-2043014,2043280-2043313,2043396-2043485,2043590-2044576,2044707-2045786,2045873-2047333	AT1G06670.1 CDS AT1G06670 ID=AT1G06670.1; Parent=AT1G06670; Name=AT1G06670.1; Note=nuclear DEIH-boxhelicase; curator_summary=nuclear DEIH-box helicase (NIH) encoding a putative RNA and/or DNA helicase homologous to a group of nucleic acid helicases from the DEAD/H family with nuclear DEIH-box helicase (NIH) distinct N- and C-terminal regions that differ from animal DEIH proteins; conf_class=1; symbol=NIH; full_name=nuclear DEIH-boxhelicase; computational_description=nuclear DEIH-boxhelicase (NIH)%3B CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502)%2C DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (InterPro:IPR011545)%2C Ankyrin repeat-containing domain (InterPro:IPR020683)%2C DEAD-like helicase%2C N-terminal (InterPro:IPR014001)%2C DNA/RNA helicase%2C C-terminal (InterPro:IPR001650)%2C Single-stranded nucleic acid binding R3H (InterPro:IPR001374)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain (InterPro:IPR014021)%3B BEST Arabidopsis thaliana protein match is: helicase in vascular tissue and tapetum (TAIR:AT2G30800.1)%3B Has 26020 Blast hits to 16191 proteins in 1841 species: Archae - 22%3B Bacteria - 7563%3B Metazoa - 5966%3B Fungi - 2932%3B Plants - 1417%3B Viruses - 339%3B Other Eukaryotes - 7781 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:10471743, locus:2009200; locus_type=protein_coding
AT1G06670.2	chr1:002040567	0.0	W/2040567-2040669,2040881-2040971,2041075-2041507,2041630-2041704,2041838-2041882,2042220-2042313,2042424-2042482,2042581-2042706,2042962-2043014,2043280-2043313,2043396-2043485,2043590-2044576,2044707-2045786,2045873-2046391,2046476-2047333	AT1G06670.2 CDS AT1G06670 ID=AT1G06670.2; Parent=AT1G06670; Name=AT1G06670.2; Note=nuclear DEIH-boxhelicase; symbol=NIH; full_name=nuclear DEIH-boxhelicase; curator_summary=nuclear DEIH-box helicase (NIH) encoding a putative RNA and/or DNA helicase homologous to a group of nucleic acid helicases from the DEAD/H family with nuclear DEIH-box helicase (NIH) distinct N- and C-terminal regions that differ from animal DEIH proteins; computational_description=nuclear DEIH-boxhelicase (NIH)%3B CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502)%2C DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (InterPro:IPR011545)%2C Ankyrin repeat-containing domain (InterPro:IPR020683)%2C DEAD-like helicase%2C N-terminal (InterPro:IPR014001)%2C DNA/RNA helicase%2C C-terminal (InterPro:IPR001650)%2C Single-stranded nucleic acid binding R3H (InterPro:IPR001374)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain (InterPro:IPR014021)%3B BEST Arabidopsis thaliana protein match is: helicase in vascular tissue and tapetum (TAIR:AT2G30800.1)%3B Has 26020 Blast hits to 16191 proteins in 1841 species: Archae - 22%3B Bacteria - 7563%3B Metazoa - 5966%3B Fungi - 2932%3B Plants - 1417%3B Viruses - 339%3B Other Eukaryotes - 7781 (source: NCBI BLink).; Dbxref=PMID:10471743, locus:2009200; locus_type=protein_coding
AT1G06680.1	chr1:002047940	0.0	W/2047940-2048186,2048297-2048529,2048620-2048670,2048926-2049186	AT1G06680.1 CDS AT1G06680 ID=AT1G06680.1; Parent=AT1G06680; Name=AT1G06680.1; Note=photosystem II subunit P-1; curator_summary=Encodes a 23 kD extrinsic protein that is part of photosystem II and participates in the regulation of oxygen evolution. Phosphorylation of this protein is dependent on calcium. In plsp1-1 mutant plastids%2C the nonmature form of the protein localizes in the stroma.; conf_class=2; symbol=PSBP-1; Alias=OE23, OXYGEN EVOLVING COMPLEX SUBUNIT 23 KDA, OEE2, OXYGEN-EVOLVING ENHANCER PROTEIN 2, PSII-P, PHOTOSYSTEM II SUBUNIT P; full_name=photosystem II subunit P-1; computational_description=photosystem II subunit P-1 (PSBP-1)%3B FUNCTIONS IN: poly(U) RNA binding%3B INVOLVED IN: photosynthesis%2C light reaction%2C defense response to bacterium%2C response to light intensity%3B LOCATED IN: in 12 components%3B EXPRESSED IN: 27 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbP (InterPro:IPR002683)%2C Mog1/PsbP/DUF1795%2C alpha/beta/alpha sandwich (InterPro:IPR016124)%2C Mog1/PsbP%2C alpha/beta/alpha sandwich (InterPro:IPR016123)%2C Twin-arginine translocation pathway%2C signal sequence (InterPro:IPR006311)%3B BEST Arabidopsis thaliana protein match is: photosystem II subunit P-2 (TAIR:AT2G30790.1)%3B Has 287 Blast hits to 286 proteins in 81 species: Archae - 0%3B Bacteria - 54%3B Metazoa - 0%3B Fungi - 0%3B Plants - 224%3B Viruses - 0%3B Other Eukaryotes - 9 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10207046, PMID:9039496, PMID:11719511, PMID:11526245, PMID:11826309, PMID:12767910, PMID:15322131, PMID:16282331, PMID:17435084, PMID:17511964, PMID:18650403, PMID:18791808, PMID:19500580, PMID:20097790, PMID:20118269, PMID:22269069, PMID:22197893, PMID:23517717, PMID:23647309, PMID:23225155, PMID:23802992, locus:2033087; locus_type=protein_coding
AT1G06680.2	chr1:002048076	0.0	W/2048076-2048190,2048297-2048529,2048620-2048670,2048926-2049186	AT1G06680.2 CDS AT1G06680 ID=AT1G06680.2; Parent=AT1G06680; Name=AT1G06680.2; Note=photosystem II subunit P-1; curator_summary=Encodes a 23 kD extrinsic protein that is part of photosystem II and participates in the regulation of oxygen evolution. Phosphorylation of this protein is dependent on calcium. In plsp1-1 mutant plastids%2C the nonmature form of the protein localizes in the stroma.; conf_class=2; symbol=PSBP-1; Alias=OE23, OXYGEN EVOLVING COMPLEX SUBUNIT 23 KDA, OEE2, OXYGEN-EVOLVING ENHANCER PROTEIN 2, PSII-P, PHOTOSYSTEM II SUBUNIT P; full_name=photosystem II subunit P-1; computational_description=photosystem II subunit P-1 (PSBP-1)%3B FUNCTIONS IN: poly(U) RNA binding%3B INVOLVED IN: photosynthesis%2C light reaction%2C defense response to bacterium%2C response to light intensity%3B LOCATED IN: in 12 components%3B EXPRESSED IN: 27 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbP (InterPro:IPR002683)%2C Mog1/PsbP/DUF1795%2C alpha/beta/alpha sandwich (InterPro:IPR016124)%2C Mog1/PsbP%2C alpha/beta/alpha sandwich (InterPro:IPR016123)%2C Twin-arginine translocation pathway%2C signal sequence (InterPro:IPR006311)%3B BEST Arabidopsis thaliana protein match is: photosystem II subunit P-2 (TAIR:AT2G30790.1)%3B Has 287 Blast hits to 286 proteins in 81 species: Archae - 0%3B Bacteria - 54%3B Metazoa - 0%3B Fungi - 0%3B Plants - 224%3B Viruses - 0%3B Other Eukaryotes - 9 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10207046, PMID:9039496, PMID:11719511, PMID:11526245, PMID:11826309, PMID:12767910, PMID:15322131, PMID:16282331, PMID:17435084, PMID:17511964, PMID:18650403, PMID:18791808, PMID:19500580, PMID:20097790, PMID:20118269, PMID:22269069, PMID:22197893, PMID:23517717, PMID:23647309, PMID:23225155, PMID:23802992, locus:2033087; locus_type=protein_coding
AT1G06690.1	chr1:002049742	0.0	C/2049742-2049927,2050096-2050158,2050474-2050556,2050703-2050870,2050960-2051031,2051132-2051154,2051232-2051396,2051484-2051524,2051602-2051693,2051799-2052039	AT1G06690.1 CDS AT1G06690 ID=AT1G06690.1; Parent=AT1G06690; Name=AT1G06690.1; Note=NAD(P)-linked oxidoreductase superfamily protein; conf_class=2; computational_description=NAD(P)-linked oxidoreductase superfamily protein%3B FUNCTIONS IN: oxidoreductase activity%2C aldo-keto reductase activity%3B INVOLVED IN: oxidation reduction%3B LOCATED IN: chloroplast thylakoid membrane%2C chloroplast%2C plastoglobule%2C chloroplast envelope%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395)%2C Aldo/keto reductase subgroup (InterPro:IPR020471)%2C Aldo/keto reductase%2C conserved site (InterPro:IPR018170)%3B BEST Arabidopsis thaliana protein match is: NAD(P)-linked oxidoreductase superfamily protein (TAIR:AT5G53580.1)%3B Has 30017 Blast hits to 30001 proteins in 2563 species: Archae - 570%3B Bacteria - 19734%3B Metazoa - 1881%3B Fungi - 2197%3B Plants - 1331%3B Viruses - 0%3B Other Eukaryotes - 4304 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15322131, PMID:16414959, PMID:16461379, PMID:17478635, PMID:18650403, PMID:20736450, locus:2009120; locus_type=protein_coding
AT1G06700.1	chr1:002052750	0.0	C/2052750-2052875,2052986-2053072,2053158-2053290,2053375-2053648,2053786-2053912,2053995-2054248,2054468-2054552	AT1G06700.1 CDS AT1G06700 ID=AT1G06700.1; Parent=AT1G06700; Name=AT1G06700.1; Note=Protein kinase superfamily protein; conf_class=2; computational_description=Protein kinase superfamily protein%3B FUNCTIONS IN: protein tyrosine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Tyrosine-protein kinase%2C active site (InterPro:IPR008266)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT2G30740.1)%3B Has 112305 Blast hits to 111003 proteins in 4429 species: Archae - 103%3B Bacteria - 13312%3B Metazoa - 41447%3B Fungi - 9236%3B Plants - 31753%3B Viruses - 344%3B Other Eukaryotes - 16110 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17040918, PMID:18775970, PMID:21276203, PMID:21477822, locus:2009115; locus_type=protein_coding
AT1G06700.2	chr1:002052750	0.0	C/2052750-2052875,2052986-2053072,2053158-2053290,2053375-2053648,2053786-2053912,2053995-2054248,2054468-2054552	AT1G06700.2 CDS AT1G06700 ID=AT1G06700.2; Parent=AT1G06700; Name=AT1G06700.2; Note=Protein kinase superfamily protein; conf_class=2; computational_description=Protein kinase superfamily protein%3B FUNCTIONS IN: protein tyrosine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Tyrosine-protein kinase%2C active site (InterPro:IPR008266)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT2G30740.1)%3B Has 112305 Blast hits to 111003 proteins in 4429 species: Archae - 103%3B Bacteria - 13312%3B Metazoa - 41447%3B Fungi - 9236%3B Plants - 31753%3B Viruses - 344%3B Other Eukaryotes - 16110 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17040918, PMID:18775970, PMID:21276203, PMID:21477822, locus:2009115; locus_type=protein_coding
AT1G06700.3	chr1:002052750	0.0	C/2052750-2052875,2052986-2053072,2053158-2053290,2053375-2053648,2053786-2053912,2053995-2054248,2054468-2054552	AT1G06700.3 CDS AT1G06700 ID=AT1G06700.3; Parent=AT1G06700; Name=AT1G06700.3; Note=Protein kinase superfamily protein; Dbxref=PMID:17040918, PMID:18775970, PMID:21276203, PMID:21477822, locus:2009115; computational_description=Protein kinase superfamily protein%3B FUNCTIONS IN: protein tyrosine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Tyrosine-protein kinase%2C active site (InterPro:IPR008266)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT2G30740.1)%3B Has 112305 Blast hits to 111003 proteins in 4429 species: Archae - 103%3B Bacteria - 13312%3B Metazoa - 41447%3B Fungi - 9236%3B Plants - 31753%3B Viruses - 344%3B Other Eukaryotes - 16110 (source: NCBI BLink).; locus_type=protein_coding
AT1TE06730	chr1:002055313	0.0	C/2055313-2055429	AT1TE06730 transposable_element AT1TE06730 ID=AT1TE06730; Name=AT1TE06730; Alias=LIMPET1
AT1G04493.1	chr1:002055991	0.0	W/2055991-2056304	AT1G04493.1 lnc_RNA AT1G04493 ID=AT1G04493.1; Parent=AT1G04493; Name=AT1G04493.1; locus_type=long_noncoding_rna
AT1G04497.1	chr1:002056863	0.0	W/2056863-2057170	AT1G04497.1 lnc_RNA AT1G04497 ID=AT1G04497.1; Parent=AT1G04497; Name=AT1G04497.1; locus_type=long_noncoding_rna
AT1G06710.12	chr1:002056999	0.0	C/2056999-2057043,2057294-2060242	AT1G06710.12 CDS AT1G06710 ID=AT1G06710.12; Parent=AT1G06710; Name=AT1G06710.12; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; Alias=MTSF1, mitochondrial stability factor 1; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G06920.1)%3B Has 67223 Blast hits to 14860 proteins in 308 species: Archae - 6%3B Bacteria - 56%3B Metazoa - 772%3B Fungi - 1057%3B Plants - 62952%3B Viruses - 0%3B Other Eukaryotes - 2380 (source: NCBI BLink).; Dbxref=PMID:15269332, PMID:15565108, PMID:23658225, locus:2033128; locus_type=protein_coding
AT1G06710.13	chr1:002056999	0.0	C/2056999-2057043,2057294-2060242	AT1G06710.13 CDS AT1G06710 ID=AT1G06710.13; Parent=AT1G06710; Name=AT1G06710.13; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; Alias=MTSF1, mitochondrial stability factor 1; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G06920.1)%3B Has 67223 Blast hits to 14860 proteins in 308 species: Archae - 6%3B Bacteria - 56%3B Metazoa - 772%3B Fungi - 1057%3B Plants - 62952%3B Viruses - 0%3B Other Eukaryotes - 2380 (source: NCBI BLink).; Dbxref=PMID:15269332, PMID:15565108, PMID:23658225, locus:2033128; locus_type=protein_coding
AT1G06710.19	chr1:002056999	0.0	C/2056999-2057043,2057294-2060242	AT1G06710.19 CDS AT1G06710 ID=AT1G06710.19; Parent=AT1G06710; Name=AT1G06710.19; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; Alias=MTSF1, mitochondrial stability factor 1; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G06920.1)%3B Has 67223 Blast hits to 14860 proteins in 308 species: Archae - 6%3B Bacteria - 56%3B Metazoa - 772%3B Fungi - 1057%3B Plants - 62952%3B Viruses - 0%3B Other Eukaryotes - 2380 (source: NCBI BLink).; Dbxref=PMID:15269332, PMID:15565108, PMID:23658225, locus:2033128; locus_type=protein_coding
AT1G06710.1	chr1:002056999	0.0	C/2056999-2057043,2057294-2060242	AT1G06710.1 CDS AT1G06710 ID=AT1G06710.1; Parent=AT1G06710; Name=AT1G06710.1; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; conf_class=4; Alias=MTSF1, mitochondrial stability factor 1; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G06920.1)%3B Has 67223 Blast hits to 14860 proteins in 308 species: Archae - 6%3B Bacteria - 56%3B Metazoa - 772%3B Fungi - 1057%3B Plants - 62952%3B Viruses - 0%3B Other Eukaryotes - 2380 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:15269332, PMID:15565108, PMID:23658225, locus:2033128; locus_type=protein_coding
AT1G06710.2	chr1:002056999	0.0	C/2056999-2057043,2057294-2060242	AT1G06710.2 CDS AT1G06710 ID=AT1G06710.2; Parent=AT1G06710; Name=AT1G06710.2; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; Alias=MTSF1, mitochondrial stability factor 1; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G06920.1)%3B Has 67223 Blast hits to 14860 proteins in 308 species: Archae - 6%3B Bacteria - 56%3B Metazoa - 772%3B Fungi - 1057%3B Plants - 62952%3B Viruses - 0%3B Other Eukaryotes - 2380 (source: NCBI BLink).; Dbxref=PMID:15269332, PMID:15565108, PMID:23658225, locus:2033128; locus_type=protein_coding
AT1G06710.3	chr1:002056999	0.0	C/2056999-2057043,2057294-2060242	AT1G06710.3 CDS AT1G06710 ID=AT1G06710.3; Parent=AT1G06710; Name=AT1G06710.3; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; Alias=MTSF1, mitochondrial stability factor 1; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G06920.1)%3B Has 67223 Blast hits to 14860 proteins in 308 species: Archae - 6%3B Bacteria - 56%3B Metazoa - 772%3B Fungi - 1057%3B Plants - 62952%3B Viruses - 0%3B Other Eukaryotes - 2380 (source: NCBI BLink).; Dbxref=PMID:15269332, PMID:15565108, PMID:23658225, locus:2033128; locus_type=protein_coding
AT1G06710.4	chr1:002056999	0.0	C/2056999-2057043,2057294-2060242	AT1G06710.4 CDS AT1G06710 ID=AT1G06710.4; Parent=AT1G06710; Name=AT1G06710.4; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; Alias=MTSF1, mitochondrial stability factor 1; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G06920.1)%3B Has 67223 Blast hits to 14860 proteins in 308 species: Archae - 6%3B Bacteria - 56%3B Metazoa - 772%3B Fungi - 1057%3B Plants - 62952%3B Viruses - 0%3B Other Eukaryotes - 2380 (source: NCBI BLink).; Dbxref=PMID:15269332, PMID:15565108, PMID:23658225, locus:2033128; locus_type=protein_coding
AT1G06710.5	chr1:002056999	0.0	C/2056999-2057043,2057294-2060242	AT1G06710.5 CDS AT1G06710 ID=AT1G06710.5; Parent=AT1G06710; Name=AT1G06710.5; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; Alias=MTSF1, mitochondrial stability factor 1; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G06920.1)%3B Has 67223 Blast hits to 14860 proteins in 308 species: Archae - 6%3B Bacteria - 56%3B Metazoa - 772%3B Fungi - 1057%3B Plants - 62952%3B Viruses - 0%3B Other Eukaryotes - 2380 (source: NCBI BLink).; Dbxref=PMID:15269332, PMID:15565108, PMID:23658225, locus:2033128; locus_type=protein_coding
AT1G06710.6	chr1:002056999	0.0	C/2056999-2057043,2057294-2060242	AT1G06710.6 CDS AT1G06710 ID=AT1G06710.6; Parent=AT1G06710; Name=AT1G06710.6; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; Alias=MTSF1, mitochondrial stability factor 1; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G06920.1)%3B Has 67223 Blast hits to 14860 proteins in 308 species: Archae - 6%3B Bacteria - 56%3B Metazoa - 772%3B Fungi - 1057%3B Plants - 62952%3B Viruses - 0%3B Other Eukaryotes - 2380 (source: NCBI BLink).; Dbxref=PMID:15269332, PMID:15565108, PMID:23658225, locus:2033128; locus_type=protein_coding
AT1G06710.7	chr1:002056999	0.0	C/2056999-2057043,2057294-2060242	AT1G06710.7 CDS AT1G06710 ID=AT1G06710.7; Parent=AT1G06710; Name=AT1G06710.7; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; Alias=MTSF1, mitochondrial stability factor 1; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G06920.1)%3B Has 67223 Blast hits to 14860 proteins in 308 species: Archae - 6%3B Bacteria - 56%3B Metazoa - 772%3B Fungi - 1057%3B Plants - 62952%3B Viruses - 0%3B Other Eukaryotes - 2380 (source: NCBI BLink).; Dbxref=PMID:15269332, PMID:15565108, PMID:23658225, locus:2033128; locus_type=protein_coding
AT1G06710.8	chr1:002056999	0.0	C/2056999-2057043,2057294-2060242	AT1G06710.8 CDS AT1G06710 ID=AT1G06710.8; Parent=AT1G06710; Name=AT1G06710.8; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; Alias=MTSF1, mitochondrial stability factor 1; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G06920.1)%3B Has 67223 Blast hits to 14860 proteins in 308 species: Archae - 6%3B Bacteria - 56%3B Metazoa - 772%3B Fungi - 1057%3B Plants - 62952%3B Viruses - 0%3B Other Eukaryotes - 2380 (source: NCBI BLink).; Dbxref=PMID:15269332, PMID:15565108, PMID:23658225, locus:2033128; locus_type=protein_coding
AT1G06710.9	chr1:002056999	0.0	C/2056999-2057043,2057294-2060242	AT1G06710.9 CDS AT1G06710 ID=AT1G06710.9; Parent=AT1G06710; Name=AT1G06710.9; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; Alias=MTSF1, mitochondrial stability factor 1; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G06920.1)%3B Has 67223 Blast hits to 14860 proteins in 308 species: Archae - 6%3B Bacteria - 56%3B Metazoa - 772%3B Fungi - 1057%3B Plants - 62952%3B Viruses - 0%3B Other Eukaryotes - 2380 (source: NCBI BLink).; Dbxref=PMID:15269332, PMID:15565108, PMID:23658225, locus:2033128; locus_type=protein_coding
AT1G06710.10	chr1:002057279	0.0	C/2057279-2060242	AT1G06710.10 CDS AT1G06710 ID=AT1G06710.10; Parent=AT1G06710; Name=AT1G06710.10; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; Alias=MTSF1, mitochondrial stability factor 1; Dbxref=PMID:15269332, PMID:15565108, PMID:23658225, locus:2033128; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G06920.1)%3B Has 67223 Blast hits to 14860 proteins in 308 species: Archae - 6%3B Bacteria - 56%3B Metazoa - 772%3B Fungi - 1057%3B Plants - 62952%3B Viruses - 0%3B Other Eukaryotes - 2380 (source: NCBI BLink).; locus_type=protein_coding
AT1G06710.11	chr1:002057279	0.0	C/2057279-2060242	AT1G06710.11 CDS AT1G06710 ID=AT1G06710.11; Parent=AT1G06710; Name=AT1G06710.11; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; Alias=MTSF1, mitochondrial stability factor 1; Dbxref=PMID:15269332, PMID:15565108, PMID:23658225, locus:2033128; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G06920.1)%3B Has 67223 Blast hits to 14860 proteins in 308 species: Archae - 6%3B Bacteria - 56%3B Metazoa - 772%3B Fungi - 1057%3B Plants - 62952%3B Viruses - 0%3B Other Eukaryotes - 2380 (source: NCBI BLink).; locus_type=protein_coding
AT1G06710.14	chr1:002057279	0.0	C/2057279-2060242	AT1G06710.14 CDS AT1G06710 ID=AT1G06710.14; Parent=AT1G06710; Name=AT1G06710.14; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; Alias=MTSF1, mitochondrial stability factor 1; Dbxref=PMID:15269332, PMID:15565108, PMID:23658225, locus:2033128; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G06920.1)%3B Has 67223 Blast hits to 14860 proteins in 308 species: Archae - 6%3B Bacteria - 56%3B Metazoa - 772%3B Fungi - 1057%3B Plants - 62952%3B Viruses - 0%3B Other Eukaryotes - 2380 (source: NCBI BLink).; locus_type=protein_coding
AT1G06710.15	chr1:002057279	0.0	C/2057279-2060242	AT1G06710.15 CDS AT1G06710 ID=AT1G06710.15; Parent=AT1G06710; Name=AT1G06710.15; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; Alias=MTSF1, mitochondrial stability factor 1; Dbxref=PMID:15269332, PMID:15565108, PMID:23658225, locus:2033128; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G06920.1)%3B Has 67223 Blast hits to 14860 proteins in 308 species: Archae - 6%3B Bacteria - 56%3B Metazoa - 772%3B Fungi - 1057%3B Plants - 62952%3B Viruses - 0%3B Other Eukaryotes - 2380 (source: NCBI BLink).; locus_type=protein_coding
AT1G06710.16	chr1:002057279	0.0	C/2057279-2060242	AT1G06710.16 CDS AT1G06710 ID=AT1G06710.16; Parent=AT1G06710; Name=AT1G06710.16; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; Alias=MTSF1, mitochondrial stability factor 1; Dbxref=PMID:15269332, PMID:15565108, PMID:23658225, locus:2033128; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G06920.1)%3B Has 67223 Blast hits to 14860 proteins in 308 species: Archae - 6%3B Bacteria - 56%3B Metazoa - 772%3B Fungi - 1057%3B Plants - 62952%3B Viruses - 0%3B Other Eukaryotes - 2380 (source: NCBI BLink).; locus_type=protein_coding
AT1G06710.17	chr1:002057279	0.0	C/2057279-2060242	AT1G06710.17 CDS AT1G06710 ID=AT1G06710.17; Parent=AT1G06710; Name=AT1G06710.17; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; Alias=MTSF1, mitochondrial stability factor 1; Dbxref=PMID:15269332, PMID:15565108, PMID:23658225, locus:2033128; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G06920.1)%3B Has 67223 Blast hits to 14860 proteins in 308 species: Archae - 6%3B Bacteria - 56%3B Metazoa - 772%3B Fungi - 1057%3B Plants - 62952%3B Viruses - 0%3B Other Eukaryotes - 2380 (source: NCBI BLink).; locus_type=protein_coding
AT1G06710.18	chr1:002057279	0.0	C/2057279-2060242	AT1G06710.18 CDS AT1G06710 ID=AT1G06710.18; Parent=AT1G06710; Name=AT1G06710.18; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; Alias=MTSF1, mitochondrial stability factor 1; Dbxref=PMID:15269332, PMID:15565108, PMID:23658225, locus:2033128; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G06920.1)%3B Has 67223 Blast hits to 14860 proteins in 308 species: Archae - 6%3B Bacteria - 56%3B Metazoa - 772%3B Fungi - 1057%3B Plants - 62952%3B Viruses - 0%3B Other Eukaryotes - 2380 (source: NCBI BLink).; locus_type=protein_coding
AT1G06720.1	chr1:002060615	0.0	C/2060615-2060776,2060872-2061075,2061197-2061445,2061528-2061737,2062196-2062435,2062603-2062821,2062892-2062944,2063365-2063671,2063760-2063956,2064119-2064299,2064636-2064925,2065132-2065372,2065833-2066043,2066132-2066322,2066496-2066614,2066733-2066823,2066902-2067048,2067150-2067281	AT1G06720.1 CDS AT1G06720 ID=AT1G06720.1; Parent=AT1G06720; Name=AT1G06720.1; Note=P-loop containing nucleoside triphosphate hydrolases superfamily protein; conf_class=3; computational_description=P-loop containing nucleoside triphosphate hydrolases superfamily protein%3B FUNCTIONS IN: GTP binding%2C GTPase activity%3B INVOLVED IN: ribosome biogenesis%3B LOCATED IN: nucleus%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: AARP2CN (InterPro:IPR012948)%2C Protein synthesis factor%2C GTP-binding (InterPro:IPR000795)%2C Protein of unknown function DUF663 (InterPro:IPR007034)%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G42440.1)%3B Has 8329 Blast hits to 5822 proteins in 470 species: Archae - 49%3B Bacteria - 737%3B Metazoa - 2493%3B Fungi - 1253%3B Plants - 549%3B Viruses - 77%3B Other Eukaryotes - 3171 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15356332, PMID:15695462, PMID:18218973, locus:2033050; locus_type=protein_coding
AT1G06720.2	chr1:002060615	0.0	C/2060615-2060776,2060872-2061075,2061197-2061445,2061528-2061737,2062196-2062435,2062603-2062821,2062892-2062985,2063322-2063671,2063760-2063956,2064119-2064299,2064636-2064925,2065132-2065372,2065833-2066043,2066132-2066322,2066496-2066614,2066733-2066823,2066902-2067048,2067150-2067281	AT1G06720.2 CDS AT1G06720 ID=AT1G06720.2; Parent=AT1G06720; Name=AT1G06720.2; Note=P-loop containing nucleoside triphosphate hydrolases superfamily protein; computational_description=P-loop containing nucleoside triphosphate hydrolases superfamily protein%3B FUNCTIONS IN: GTP binding%2C GTPase activity%3B INVOLVED IN: ribosome biogenesis%3B LOCATED IN: nucleus%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: AARP2CN (InterPro:IPR012948)%2C Protein synthesis factor%2C GTP-binding (InterPro:IPR000795)%2C Protein of unknown function DUF663 (InterPro:IPR007034)%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G42440.1)%3B Has 8329 Blast hits to 5822 proteins in 470 species: Archae - 49%3B Bacteria - 737%3B Metazoa - 2493%3B Fungi - 1253%3B Plants - 549%3B Viruses - 77%3B Other Eukaryotes - 3171 (source: NCBI BLink).; Dbxref=PMID:15356332, PMID:15695462, PMID:18218973, locus:2033050; locus_type=protein_coding
AT1G06720.3	chr1:002061837	0.0	C/2061837-2061932,2062196-2062435,2062603-2062821,2062892-2062985,2063322-2063671,2063760-2063956,2064119-2064299,2064636-2064925,2065132-2065372,2065833-2066043,2066132-2066322,2066496-2066614,2066733-2066823,2066902-2067048,2067150-2067281	AT1G06720.3 CDS AT1G06720 ID=AT1G06720.3; Parent=AT1G06720; Name=AT1G06720.3; Note=P-loop containing nucleoside triphosphate hydrolases superfamily protein; computational_description=P-loop containing nucleoside triphosphate hydrolases superfamily protein%3B FUNCTIONS IN: GTP binding%2C GTPase activity%3B INVOLVED IN: ribosome biogenesis%3B LOCATED IN: nucleus%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: AARP2CN (InterPro:IPR012948)%2C Protein synthesis factor%2C GTP-binding (InterPro:IPR000795)%2C Protein of unknown function DUF663 (InterPro:IPR007034)%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G42440.1)%3B Has 8329 Blast hits to 5822 proteins in 470 species: Archae - 49%3B Bacteria - 737%3B Metazoa - 2493%3B Fungi - 1253%3B Plants - 549%3B Viruses - 77%3B Other Eukaryotes - 3171 (source: NCBI BLink).; Dbxref=PMID:15356332, PMID:15695462, PMID:18218973, locus:2033050; locus_type=protein_coding
AT1G06730.1	chr1:002067633	0.0	W/2067633-2068010,2068249-2068496,2068985-2069276,2069358-2069510,2069654-2070049	AT1G06730.1 CDS AT1G06730 ID=AT1G06730.1; Parent=AT1G06730; Name=AT1G06730.1; Note=pfkB-like carbohydrate kinase family protein; conf_class=2; computational_description=pfkB-like carbohydrate kinase family protein%3B FUNCTIONS IN: kinase activity%3B INVOLVED IN: D-ribose catabolic process%3B LOCATED IN: nucleus%2C cytoplasm%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611)%3B BEST Arabidopsis thaliana protein match is: pfkB-like carbohydrate kinase family protein (TAIR:AT3G59480.1)%3B Has 14630 Blast hits to 14623 proteins in 2218 species: Archae - 286%3B Bacteria - 12051%3B Metazoa - 104%3B Fungi - 33%3B Plants - 346%3B Viruses - 0%3B Other Eukaryotes - 1810 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:15610358, locus:2033138; locus_type=protein_coding
AT1TE06780	chr1:002070737	0.0	W/2070737-2073535	AT1TE06780 transposable_element AT1TE06780 ID=AT1TE06780; Name=AT1TE06780; Alias=Unassigned
AT1G06740.1	chr1:002071194	0.0	W/2071194-2073374	AT1G06740.1 CDS AT1G06740 ID=AT1G06740.1; Parent=AT1G06740; Name=AT1G06740.1; Note=MuDR family transposase; curator_summary=Encodes a member of a domesticated transposable element gene family MUSTANG. Members of this family are derived from transposable elements genes but gained function in plant fitness and flower development. Known members include: AT3G04605 (MUG1)%2C AT2G30640 (MUG2)%2C AT1G06740 (MUG3)%2C AT5G16505 (MUG4)%2C AT3G06940 (MUG5)%2C AT5G48965 (MUG6)%2C AT3G05850 (MUG7) and AT5G34853 (MUG8).; symbol=MUG3; full_name=MUSTANG 3; computational_description=Mutator-like transposase family%2C has a 2.7e-53 P-value blast match to GB:AAA21566 mudrA of transposon%3DMuDR (MuDr-element) (Zea mays); Dbxref=PMID:15987878, PMID:22969437, locus:2033133; locus_type=protein_coding
AT1G06750.1	chr1:002073882	0.0	W/2073882-2073891,2073968-2074153,2074247-2074470,2074555-2074616,2074722-2074943,2075058-2075178,2075268-2075590,2075680-2075824,2076084-2076350	AT1G06750.1 CDS AT1G06750 ID=AT1G06750.1; Parent=AT1G06750; Name=AT1G06750.1; Note=P-loop containing nucleoside triphosphate hydrolases superfamily protein; conf_class=1; computational_description=P-loop containing nucleoside triphosphate hydrolases superfamily protein%3B FUNCTIONS IN: ATP binding%3B INVOLVED IN: cell killing%3B EXPRESSED IN: male gametophyte%2C flower%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%3B CONTAINS InterPro DOMAIN/s: Zeta toxin (InterPro:IPR010488)%3B BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G30630.1)%3B Has 186 Blast hits to 185 proteins in 43 species: Archae - 0%3B Bacteria - 32%3B Metazoa - 0%3B Fungi - 0%3B Plants - 132%3B Viruses - 3%3B Other Eukaryotes - 19 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14500793, PMID:16776300, PMID:18775970, locus:2033143; locus_type=protein_coding
AT1G06750.2	chr1:002073882	0.0	W/2073882-2073912,2073968-2074153,2074247-2074470,2074555-2074616,2074722-2074943,2075058-2075178,2075268-2075590,2075680-2075824,2076084-2076350	AT1G06750.2 CDS AT1G06750 ID=AT1G06750.2; Parent=AT1G06750; Name=AT1G06750.2; Note=P-loop containing nucleoside triphosphate hydrolases superfamily protein; conf_class=4; computational_description=P-loop containing nucleoside triphosphate hydrolases superfamily protein%3B FUNCTIONS IN: ATP binding%3B INVOLVED IN: cell killing%3B EXPRESSED IN: male gametophyte%2C flower%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%3B CONTAINS InterPro DOMAIN/s: Zeta toxin (InterPro:IPR010488)%3B BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G30630.1)%3B Has 186 Blast hits to 185 proteins in 43 species: Archae - 0%3B Bacteria - 32%3B Metazoa - 0%3B Fungi - 0%3B Plants - 132%3B Viruses - 3%3B Other Eukaryotes - 19 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:14500793, PMID:16776300, PMID:18775970, locus:2033143; locus_type=protein_coding
AT1G06750.3	chr1:002073882	0.0	W/2073882-2073891,2073968-2074153,2074247-2074470,2074555-2074616,2074722-2074943,2075058-2075178,2075268-2075590,2075680-2075824,2076084-2076350	AT1G06750.3 CDS AT1G06750 ID=AT1G06750.3; Parent=AT1G06750; Name=AT1G06750.3; Note=P-loop containing nucleoside triphosphate hydrolases superfamily protein; Dbxref=PMID:14500793, PMID:16776300, PMID:18775970, locus:2033143; computational_description=P-loop containing nucleoside triphosphate hydrolases superfamily protein%3B FUNCTIONS IN: ATP binding%3B INVOLVED IN: cell killing%3B EXPRESSED IN: male gametophyte%2C flower%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%3B CONTAINS InterPro DOMAIN/s: Zeta toxin (InterPro:IPR010488)%3B BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G30630.1)%3B Has 186 Blast hits to 185 proteins in 43 species: Archae - 0%3B Bacteria - 32%3B Metazoa - 0%3B Fungi - 0%3B Plants - 132%3B Viruses - 3%3B Other Eukaryotes - 19 (source: NCBI BLink).; locus_type=protein_coding
AT1G04503.1	chr1:002076515	0.0	W/2076515-2076998	AT1G04503.1 antisense_lncRNA AT1G04503 ID=AT1G04503.1; Parent=AT1G04503; Name=AT1G04503.1; description=Natural antisense transcript overlaps with AT1G06760; Note=Natural antisense transcript overlaps with AT1G06760; locus_type=antisense_long_noncoding_rna
AT1G06760.1	chr1:002076687	0.0	C/2076687-2077310,2077416-2077616	AT1G06760.1 CDS AT1G06760 ID=AT1G06760.1; Parent=AT1G06760; Name=AT1G06760.1; Note=winged-helix DNA-binding transcription factor family protein; conf_class=2; computational_description=winged-helix DNA-binding transcription factor family protein%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: nucleosome assembly%3B LOCATED IN: nucleus%2C nucleosome%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991)%2C Histone H5 (InterPro:IPR005819)%2C Histone H1/H5 (InterPro:IPR005818)%3B BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT2G30620.1)%3B Has 20265 Blast hits to 10904 proteins in 1494 species: Archae - 37%3B Bacteria - 8386%3B Metazoa - 4718%3B Fungi - 1128%3B Plants - 980%3B Viruses - 120%3B Other Eukaryotes - 4896 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12169696, PMID:12953064, PMID:14973164, PMID:15489532, PMID:15688252, PMID:16489130, PMID:16897085, PMID:17307927, PMID:20736450, locus:2033118; locus_type=protein_coding
AT1G06770.1	chr1:002079222	0.0	C/2079222-2079401,2079512-2079584,2079717-2079767,2079877-2080307,2080470-2080794,2081107-2081206,2081602-2081707	AT1G06770.1 CDS AT1G06770 ID=AT1G06770.1; Parent=AT1G06770; Name=AT1G06770.1; Note=DREB2A-interacting protein 1; curator_summary=Encodes a C3HC4 RING-domain-containing ubiquitin E3 ligase capable of interacting with DREB2A. The DRIP1-GFP fusion protein is nuclear-localized. DRIP1 seems to be involved in regulating stress-related transcriptional changes and drought tolerance.; conf_class=2; symbol=DRIP1; full_name=DREB2A-interacting protein 1; computational_description=DREB2A-interacting protein 1 (DRIP1)%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type%2C conserved site (InterPro:IPR017907)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: DREB2A-interacting protein 2 (TAIR:AT2G30580.1)%3B Has 2055 Blast hits to 2008 proteins in 210 species: Archae - 0%3B Bacteria - 27%3B Metazoa - 1318%3B Fungi - 145%3B Plants - 309%3B Viruses - 2%3B Other Eukaryotes - 254 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16776300, PMID:18599647, PMID:18552202, PMID:18650403, PMID:18775970, PMID:20736450, PMID:20933424, PMID:21701597, PMID:24376497, locus:2033103; locus_type=protein_coding
AT1G06770.2	chr1:002079222	0.0	C/2079222-2079401,2079512-2079584,2079717-2079767,2079877-2080307,2080470-2080658	AT1G06770.2 CDS AT1G06770 ID=AT1G06770.2; Parent=AT1G06770; Name=AT1G06770.2; Note=DREB2A-interacting protein 1; curator_summary=Encodes a C3HC4 RING-domain-containing ubiquitin E3 ligase capable of interacting with DREB2A. The DRIP1-GFP fusion protein is nuclear-localized. DRIP1 seems to be involved in regulating stress-related transcriptional changes and drought tolerance.; conf_class=2; symbol=DRIP1; full_name=DREB2A-interacting protein 1; computational_description=DREB2A-interacting protein 1 (DRIP1)%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type%2C conserved site (InterPro:IPR017907)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: DREB2A-interacting protein 2 (TAIR:AT2G30580.1)%3B Has 2055 Blast hits to 2008 proteins in 210 species: Archae - 0%3B Bacteria - 27%3B Metazoa - 1318%3B Fungi - 145%3B Plants - 309%3B Viruses - 2%3B Other Eukaryotes - 254 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16776300, PMID:18599647, PMID:18552202, PMID:18650403, PMID:18775970, PMID:20736450, PMID:20933424, PMID:21701597, PMID:24376497, locus:2033103; locus_type=protein_coding
AT1G06770.3	chr1:002079398	0.0	C/2079398-2079584,2079717-2079767,2079877-2080307,2080470-2080794,2081107-2081206,2081602-2081707	AT1G06770.3 CDS AT1G06770 ID=AT1G06770.3; Parent=AT1G06770; Name=AT1G06770.3; Note=DREB2A-interacting protein 1; symbol=DRIP1; full_name=DREB2A-interacting protein 1; curator_summary=Encodes a C3HC4 RING-domain-containing ubiquitin E3 ligase capable of interacting with DREB2A. The DRIP1-GFP fusion protein is nuclear-localized. DRIP1 seems to be involved in regulating stress-related transcriptional changes and drought tolerance.; computational_description=DREB2A-interacting protein 1 (DRIP1)%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type%2C conserved site (InterPro:IPR017907)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: DREB2A-interacting protein 2 (TAIR:AT2G30580.1)%3B Has 2055 Blast hits to 2008 proteins in 210 species: Archae - 0%3B Bacteria - 27%3B Metazoa - 1318%3B Fungi - 145%3B Plants - 309%3B Viruses - 2%3B Other Eukaryotes - 254 (source: NCBI BLink).; Dbxref=PMID:16776300, PMID:18599647, PMID:18552202, PMID:18650403, PMID:18775970, PMID:20736450, PMID:20933424, PMID:21701597, PMID:24376497, locus:2033103; locus_type=protein_coding
AT1G06780.1	chr1:002083689	0.0	W/2083689-2083800,2083991-2084025,2084186-2084227,2084318-2084399,2084487-2084557,2084808-2085079,2085225-2085582,2085716-2086237,2086578-2086853	AT1G06780.1 CDS AT1G06780 ID=AT1G06780.1; Parent=AT1G06780; Name=AT1G06780.1; Note=galacturonosyltransferase 6; curator_summary=Encodes a protein with putative galacturonosyltransferase activity.; conf_class=2; symbol=GAUT6; full_name=galacturonosyltransferase 6; computational_description=galacturonosyltransferase 6 (GAUT6)%3B FUNCTIONS IN: polygalacturonate 4-alpha-galacturonosyltransferase activity%2C transferase activity%2C transferring glycosyl groups%3B INVOLVED IN: carbohydrate biosynthetic process%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Glycosyl transferase%2C family 8 (InterPro:IPR002495)%3B BEST Arabidopsis thaliana protein match is: los glycosyltransferase 5 (TAIR:AT2G30575.1)%3B Has 1389 Blast hits to 1379 proteins in 238 species: Archae - 0%3B Bacteria - 400%3B Metazoa - 143%3B Fungi - 0%3B Plants - 830%3B Viruses - 0%3B Other Eukaryotes - 16 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16540543, PMID:18650403, PMID:18775970, locus:2033092; locus_type=protein_coding
AT1G06780.2	chr1:002083689	0.0	W/2083689-2083839,2083991-2084025,2084186-2084227,2084318-2084399,2084487-2084557,2084808-2085079,2085225-2085582,2085716-2086237,2086578-2086853	AT1G06780.2 CDS AT1G06780 ID=AT1G06780.2; Parent=AT1G06780; Name=AT1G06780.2; Note=galacturonosyltransferase 6; curator_summary=Encodes a protein with putative galacturonosyltransferase activity.; conf_class=6; symbol=GAUT6; full_name=galacturonosyltransferase 6; computational_description=galacturonosyltransferase 6 (GAUT6)%3B FUNCTIONS IN: polygalacturonate 4-alpha-galacturonosyltransferase activity%2C transferase activity%2C transferring glycosyl groups%3B INVOLVED IN: carbohydrate biosynthetic process%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Glycosyl transferase%2C family 8 (InterPro:IPR002495)%3B BEST Arabidopsis thaliana protein match is: los glycosyltransferase 5 (TAIR:AT2G30575.1)%3B Has 1389 Blast hits to 1379 proteins in 238 species: Archae - 0%3B Bacteria - 400%3B Metazoa - 143%3B Fungi - 0%3B Plants - 830%3B Viruses - 0%3B Other Eukaryotes - 16 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:16540543, PMID:18650403, PMID:18775970, locus:2033092; locus_type=protein_coding
AT1G06790.1	chr1:002087645	0.0	W/2087645-2087755,2087859-2087954,2088302-2088389,2088561-2088645,2088766-2088835,2088920-2089009,2089213-2089287	AT1G06790.1 CDS AT1G06790 ID=AT1G06790.1; Parent=AT1G06790; Name=AT1G06790.1; Note=RNA polymerase Rpb7 N-terminal domain-containing protein; conf_class=2; computational_description=RNA polymerase Rpb7 N-terminal domain-containing protein%3B FUNCTIONS IN: DNA-directed RNA polymerase activity%3B INVOLVED IN: transcription%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA polymerase Rpb7%2C N-terminal (InterPro:IPR005576)%2C RNA polymerase III%2C subunit Rpc25 (InterPro:IPR013238)%3B Has 892 Blast hits to 892 proteins in 299 species: Archae - 169%3B Bacteria - 0%3B Metazoa - 273%3B Fungi - 266%3B Plants - 84%3B Viruses - 0%3B Other Eukaryotes - 100 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2033077; locus_type=protein_coding
AT1G06790.2	chr1:002087645	0.0	W/2087645-2087755,2087859-2087954,2088302-2088389,2088561-2088645,2088766-2088835,2088920-2089039	AT1G06790.2 CDS AT1G06790 ID=AT1G06790.2; Parent=AT1G06790; Name=AT1G06790.2; Note=RNA polymerase Rpb7 N-terminal domain-containing protein; conf_class=2; computational_description=RNA polymerase Rpb7 N-terminal domain-containing protein%3B FUNCTIONS IN: DNA-directed RNA polymerase activity%3B INVOLVED IN: transcription%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA polymerase Rpb7%2C N-terminal (InterPro:IPR005576)%2C RNA polymerase III%2C subunit Rpc25 (InterPro:IPR013238)%3B Has 892 Blast hits to 892 proteins in 299 species: Archae - 169%3B Bacteria - 0%3B Metazoa - 273%3B Fungi - 266%3B Plants - 84%3B Viruses - 0%3B Other Eukaryotes - 100 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2033077; locus_type=protein_coding
AT1G04507.1	chr1:002088988	0.0	C/2088988-2089235	AT1G04507.1 antisense_lncRNA AT1G04507 ID=AT1G04507.1; Parent=AT1G04507; Name=AT1G04507.1; description=Natural antisense transcript overlaps with AT1G06790; Note=Natural antisense transcript overlaps with AT1G06790; locus_type=antisense_long_noncoding_rna
AT1G06800.1	chr1:002089538	0.0	C/2089538-2089787,2090146-2091443	AT1G06800.1 CDS AT1G06800 ID=AT1G06800.1; Parent=AT1G06800; Name=AT1G06800.1; Note=alpha/beta-Hydrolases superfamily protein; curator_summary=Encodes a lipase that hydrolyzes phosphatidylcholine%2C glycolipids as well as triacylglycerols.; conf_class=2; symbol=PLA-I%7Bgamma%7D1; Alias=DALL4, DAD1-Like Lipase 4; full_name=phospholipase A I gamma 1; computational_description=alpha/beta-Hydrolases superfamily protein%3B FUNCTIONS IN: galactolipase activity%2C triglyceride lipase activity%2C phospholipase A1 activity%3B INVOLVED IN: lipid metabolic process%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 8 plant structures%3B EXPRESSED DURING: 4 anthesis%2C C globular stage%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Lipase%2C class 3 (InterPro:IPR002921)%3B BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G30550.2)%3B Has 1444 Blast hits to 1435 proteins in 292 species: Archae - 0%3B Bacteria - 280%3B Metazoa - 45%3B Fungi - 276%3B Plants - 599%3B Viruses - 3%3B Other Eukaryotes - 241 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15130548, PMID:16299169, PMID:19527719, PMID:20348210, PMID:20855949, PMID:23505340, PMID:24430866, locus:2033066; locus_type=protein_coding
AT1G04513.1	chr1:002089765	0.0	W/2089765-2090865	AT1G04513.1 antisense_lncRNA AT1G04513 ID=AT1G04513.1; Parent=AT1G04513; Name=AT1G04513.1; description=Natural antisense transcript overlaps with AT1G06800; Note=Natural antisense transcript overlaps with AT1G06800; locus_type=antisense_long_noncoding_rna
AT1G06800.2	chr1:002090109	0.0	C/2090109-2091443	AT1G06800.2 CDS AT1G06800 ID=AT1G06800.2; Parent=AT1G06800; Name=AT1G06800.2; Note=alpha/beta-Hydrolases superfamily protein; curator_summary=Encodes a lipase that hydrolyzes phosphatidylcholine%2C glycolipids as well as triacylglycerols.; conf_class=1; symbol=PLA-I%7Bgamma%7D1; Alias=DALL4, DAD1-Like Lipase 4; full_name=phospholipase A I gamma 1; computational_description=alpha/beta-Hydrolases superfamily protein%3B FUNCTIONS IN: galactolipase activity%2C triglyceride lipase activity%2C phospholipase A1 activity%3B INVOLVED IN: lipid metabolic process%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 8 plant structures%3B EXPRESSED DURING: 4 anthesis%2C C globular stage%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Lipase%2C class 3 (InterPro:IPR002921)%3B BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G30550.2)%3B Has 1444 Blast hits to 1435 proteins in 292 species: Archae - 0%3B Bacteria - 280%3B Metazoa - 45%3B Fungi - 276%3B Plants - 599%3B Viruses - 3%3B Other Eukaryotes - 241 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15130548, PMID:16299169, PMID:19527719, PMID:20348210, PMID:20855949, PMID:23505340, PMID:24430866, locus:2033066; locus_type=protein_coding
AT1G06810.1	chr1:002091738	0.0	C/2091738-2091830,2091930-2092309,2092393-2092528	AT1G06810.1 CDS AT1G06810 ID=AT1G06810.1; Parent=AT1G06810; Name=AT1G06810.1; Note=endonuclease/glycosyl hydrolase; conf_class=1; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05400.2)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:2033113; locus_type=protein_coding
AT1G06820.1	chr1:002093145	0.0	C/2093145-2093218,2093312-2093420,2093521-2093631,2093793-2093906,2094016-2094150,2094234-2094382,2094496-2094574,2094681-2094833,2094911-2094967,2095069-2095151,2095309-2095408,2095485-2095691,2095804-2096220	AT1G06820.1 CDS AT1G06820 ID=AT1G06820.1; Parent=AT1G06820; Name=AT1G06820.1; Note=carotenoid isomerase; curator_summary=Encodes carotenoid isomerase. Catalyzes the isomerization of poly-cis-carotenoids to all-trans-carotenoids. Together with PDS and ZDS%2C CRTiso is required to complete the synthesis of lycopene from phytoene.; conf_class=2; symbol=CRTISO; Alias=CCR2, CAROTENOID AND CHLOROPLAST REGULATION 2; full_name=carotenoid isomerase; computational_description=carotenoid isomerase (CRTISO)%3B CONTAINS InterPro DOMAIN/s: Fumarate reductase/succinate dehydrogenase flavoprotein%2C N-terminal (InterPro:IPR003953)%2C Carotene isomerase (InterPro:IPR014101)%3B BEST Arabidopsis thaliana protein match is: FAD/NAD(P)-binding oxidoreductase family protein (TAIR:AT1G57770.1)%3B Has 6522 Blast hits to 6439 proteins in 939 species: Archae - 207%3B Bacteria - 2788%3B Metazoa - 150%3B Fungi - 77%3B Plants - 203%3B Viruses - 0%3B Other Eukaryotes - 3097 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11884677, PMID:19174535, PMID:19952001, locus:2033055; locus_type=protein_coding
AT1G06820.4	chr1:002093145	0.0	C/2093145-2093218,2093312-2093420,2093521-2093631,2093793-2093906,2094016-2094150,2094234-2094382,2094496-2094574,2094681-2094833,2094911-2094967,2095069-2095151,2095309-2095408,2095485-2095698,2095804-2095856	AT1G06820.4 CDS AT1G06820 ID=AT1G06820.4; Parent=AT1G06820; Name=AT1G06820.4; Note=carotenoid isomerase; symbol=CRTISO; Alias=CCR2, CAROTENOID AND CHLOROPLAST REGULATION 2; full_name=carotenoid isomerase; curator_summary=Encodes carotenoid isomerase. Catalyzes the isomerization of poly-cis-carotenoids to all-trans-carotenoids. Together with PDS and ZDS%2C CRTiso is required to complete the synthesis of lycopene from phytoene.; computational_description=carotenoid isomerase (CRTISO)%3B CONTAINS InterPro DOMAIN/s: Fumarate reductase/succinate dehydrogenase flavoprotein%2C N-terminal (InterPro:IPR003953)%2C Carotene isomerase (InterPro:IPR014101)%3B BEST Arabidopsis thaliana protein match is: FAD/NAD(P)-binding oxidoreductase family protein (TAIR:AT1G57770.1)%3B Has 6522 Blast hits to 6439 proteins in 939 species: Archae - 207%3B Bacteria - 2788%3B Metazoa - 150%3B Fungi - 77%3B Plants - 203%3B Viruses - 0%3B Other Eukaryotes - 3097 (source: NCBI BLink).; Dbxref=PMID:11884677, PMID:19174535, PMID:19952001, locus:2033055; locus_type=protein_coding
AT1G06820.3	chr1:002093265	0.0	C/2093265-2093420,2093521-2093631,2093793-2093906,2094016-2094150,2094234-2094382,2094496-2094574,2094681-2094833,2094911-2094967,2095069-2095151,2095309-2095408,2095485-2095691,2095804-2096220	AT1G06820.3 CDS AT1G06820 ID=AT1G06820.3; Parent=AT1G06820; Name=AT1G06820.3; Note=carotenoid isomerase; symbol=CRTISO; Alias=CCR2, CAROTENOID AND CHLOROPLAST REGULATION 2; full_name=carotenoid isomerase; curator_summary=Encodes carotenoid isomerase. Catalyzes the isomerization of poly-cis-carotenoids to all-trans-carotenoids. Together with PDS and ZDS%2C CRTiso is required to complete the synthesis of lycopene from phytoene.; computational_description=carotenoid isomerase (CRTISO)%3B CONTAINS InterPro DOMAIN/s: Fumarate reductase/succinate dehydrogenase flavoprotein%2C N-terminal (InterPro:IPR003953)%2C Carotene isomerase (InterPro:IPR014101)%3B BEST Arabidopsis thaliana protein match is: FAD/NAD(P)-binding oxidoreductase family protein (TAIR:AT1G57770.1)%3B Has 6522 Blast hits to 6439 proteins in 939 species: Archae - 207%3B Bacteria - 2788%3B Metazoa - 150%3B Fungi - 77%3B Plants - 203%3B Viruses - 0%3B Other Eukaryotes - 3097 (source: NCBI BLink).; Dbxref=PMID:11884677, PMID:19174535, PMID:19952001, locus:2033055; locus_type=protein_coding
AT1G06820.2	chr1:002093721	0.0	C/2093721-2093906,2094016-2094150,2094234-2094382,2094496-2094574,2094681-2094833,2094911-2094967,2095069-2095151,2095309-2095408,2095485-2095691,2095804-2096220	AT1G06820.2 CDS AT1G06820 ID=AT1G06820.2; Parent=AT1G06820; Name=AT1G06820.2; Note=carotenoid isomerase; symbol=CRTISO; Alias=CCR2, CAROTENOID AND CHLOROPLAST REGULATION 2; full_name=carotenoid isomerase; curator_summary=Encodes carotenoid isomerase. Catalyzes the isomerization of poly-cis-carotenoids to all-trans-carotenoids. Together with PDS and ZDS%2C CRTiso is required to complete the synthesis of lycopene from phytoene.; computational_description=carotenoid isomerase (CRTISO)%3B CONTAINS InterPro DOMAIN/s: Fumarate reductase/succinate dehydrogenase flavoprotein%2C N-terminal (InterPro:IPR003953)%2C Carotene isomerase (InterPro:IPR014101)%3B BEST Arabidopsis thaliana protein match is: FAD/NAD(P)-binding oxidoreductase family protein (TAIR:AT1G57770.1)%3B Has 6522 Blast hits to 6439 proteins in 939 species: Archae - 207%3B Bacteria - 2788%3B Metazoa - 150%3B Fungi - 77%3B Plants - 203%3B Viruses - 0%3B Other Eukaryotes - 3097 (source: NCBI BLink).; Dbxref=PMID:11884677, PMID:19174535, PMID:19952001, locus:2033055; locus_type=protein_coding
AT1G06830.1	chr1:002097189	0.0	W/2097189-2097488	AT1G06830.1 CDS AT1G06830 ID=AT1G06830.1; Parent=AT1G06830; Name=AT1G06830.1; Note=Glutaredoxin family protein; conf_class=1; computational_description=Glutaredoxin family protein%3B FUNCTIONS IN: electron carrier activity%2C protein disulfide oxidoreductase activity%3B INVOLVED IN: cell redox homeostasis%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 19 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: Glutaredoxin-like%2C plant II (InterPro:IPR011905)%2C Thioredoxin fold (InterPro:IPR012335)%2C Glutaredoxin (InterPro:IPR002109)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT2G30540.1)%3B Has 1028 Blast hits to 1026 proteins in 139 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 195%3B Fungi - 77%3B Plants - 717%3B Viruses - 0%3B Other Eukaryotes - 35 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15632145, PMID:15546358, PMID:16299171, PMID:16720602, PMID:17031546, PMID:17028338, PMID:18552355, locus:2033148; locus_type=protein_coding
AT1G06840.1	chr1:002097854	0.0	C/2097854-2098195,2098276-2098410,2098489-2098739,2098943-2098994,2099077-2099360,2099468-2099626,2099851-2100353,2100553-2100621,2100730-2100816,2100934-2101005,2101138-2101206,2101310-2101378,2101661-2101735,2101853-2101924,2102078-2102149,2102266-2102409,2102484-2102555,2102653-2102724,2102808-2102958,2103097-2103208	AT1G06840.1 CDS AT1G06840 ID=AT1G06840.1; Parent=AT1G06840; Name=AT1G06840.1; Note=Leucine-rich repeat protein kinase family protein; conf_class=3; computational_description=Leucine-rich repeat protein kinase family protein%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C ATP binding%3B INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway%2C protein amino acid phosphorylation%3B LOCATED IN: plasma membrane%2C membrane%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Leucine-rich repeat-containing N-terminal domain%2C type 2 (InterPro:IPR013210)%2C Leucine-rich repeat (InterPro:IPR001611)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%3B BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G01950.1)%3B Has 194453 Blast hits to 138780 proteins in 4845 species: Archae - 155%3B Bacteria - 17954%3B Metazoa - 60073%3B Fungi - 10970%3B Plants - 82493%3B Viruses - 385%3B Other Eukaryotes - 22423 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12972053, PMID:15010618, PMID:16618929, PMID:17432890, PMID:18776641, PMID:19174535, locus:2033158; locus_type=protein_coding
AT1G06850.1	chr1:002105233	0.0	W/2105233-2105693,2105774-2105906,2106018-2106102,2106184-2106518	AT1G06850.1 CDS AT1G06850 ID=AT1G06850.1; Parent=AT1G06850; Name=AT1G06850.1; Note=basic leucine-zipper 52; conf_class=2; symbol=bZIP52; Alias=AtbZIP52, basic leucine-zipper 52; full_name=basic leucine-zipper 52; computational_description=basic leucine-zipper 52 (bZIP52)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827)%2C bZIP transcription factor%2C bZIP-1 (InterPro:IPR011616)%3B BEST Arabidopsis thaliana protein match is: Basic-leucine zipper (bZIP) transcription factor family protein (TAIR:AT2G40620.1)%3B Has 1688 Blast hits to 1688 proteins in 185 species: Archae - 0%3B Bacteria - 22%3B Metazoa - 232%3B Fungi - 142%3B Plants - 1216%3B Viruses - 2%3B Other Eukaryotes - 74 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:11906833, PMID:15047879, PMID:15226410, PMID:16731568, PMID:16709202, PMID:18775970, PMID:20736450, PMID:24377444, PMID:25093810, locus:2033123; locus_type=protein_coding
AT1G06850.2	chr1:002105233	0.0	W/2105233-2105693,2105774-2106008	AT1G06850.2 CDS AT1G06850 ID=AT1G06850.2; Parent=AT1G06850; Name=AT1G06850.2; Note=basic leucine-zipper 52; conf_class=3; symbol=bZIP52; Alias=AtbZIP52, basic leucine-zipper 52; full_name=basic leucine-zipper 52; computational_description=basic leucine-zipper 52 (bZIP52)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827)%2C bZIP transcription factor%2C bZIP-1 (InterPro:IPR011616)%3B BEST Arabidopsis thaliana protein match is: Basic-leucine zipper (bZIP) transcription factor family protein (TAIR:AT2G40620.1)%3B Has 1688 Blast hits to 1688 proteins in 185 species: Archae - 0%3B Bacteria - 22%3B Metazoa - 232%3B Fungi - 142%3B Plants - 1216%3B Viruses - 2%3B Other Eukaryotes - 74 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:11906833, PMID:15047879, PMID:15226410, PMID:16731568, PMID:16709202, PMID:18775970, PMID:20736450, PMID:24377444, PMID:25093810, locus:2033123; locus_type=protein_coding
AT1G08875.1	chr1:002106794	0.0	C/2106794-2107781	AT1G08875.1 transcript_region AT1G08875 ID=AT1G08875.1; Parent=AT1G08875; computational_description=novel transcribed region; Name=AT1G08875.1; locus_type=novel_transcribed_region
AT1G04517.1	chr1:002107313	0.0	C/2107313-2107396	AT1G04517.1 snoRNA AT1G04517 ID=AT1G04517.1; Parent=AT1G04517; Name=AT1G04517.1; Alias=AtsnoR43.2; Dbxref=PMID:20081206, PMID:22820990; locus_type=small_nucleolar_rna
AT1G06860.1	chr1:002107398	0.0	C/2107398-2107468	AT1G06860.1 tRNA AT1G06860 ID=AT1G06860.1; Parent=AT1G06860; Note=tRNA-Gly; computational_description=tRNA-Gly (anticodon: GCC); Dbxref=PMID:8980477, PMID:23066098, PMID:8980477, locus:3690698; Name=AT1G06860.1; locus_type=pre_trna
AT1G04523.1	chr1:002107815	0.0	C/2107815-2108063	AT1G04523.1 lnc_RNA AT1G04523 ID=AT1G04523.1; Parent=AT1G04523; Name=AT1G04523.1; locus_type=long_noncoding_rna
AT1G06870.1	chr1:002108832	0.0	W/2108832-2109518,2109763-2109831,2109918-2109986,2110170-2110256,2110358-2110425,2110519-2110642	AT1G06870.1 CDS AT1G06870 ID=AT1G06870.1; Parent=AT1G06870; Name=AT1G06870.1; Note=Peptidase S24/S26A/S26B/S26C family protein; conf_class=2; symbol=Plsp2A; full_name=plastidic type I signal peptidase 2A; computational_description=Peptidase S24/S26A/S26B/S26C family protein%3B FUNCTIONS IN: serine-type peptidase activity%2C peptidase activity%3B INVOLVED IN: proteolysis%3B LOCATED IN: integral to membrane%2C membrane%3B EXPRESSED IN: male gametophyte%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%3B CONTAINS InterPro DOMAIN/s: Peptidase S24/S26A/S26B/S26C%2C beta-ribbon domain (InterPro:IPR011056)%2C Peptidase S24/S26A/S26B/S26C (InterPro:IPR015927)%2C Peptidase S26A%2C signal peptidase I%2C conserved site (InterPro:IPR019758)%2C Peptidase S26%2C conserved region (InterPro:IPR019533)%2C Peptidase S26A%2C signal peptidase I (InterPro:IPR000223)%2C Peptidase S26A%2C signal peptidase I%2C serine active site (InterPro:IPR019756)%3B BEST Arabidopsis thaliana protein match is: thylakoid processing peptide (TAIR:AT2G30440.1)%3B Has 9578 Blast hits to 9341 proteins in 2371 species: Archae - 0%3B Bacteria - 7160%3B Metazoa - 214%3B Fungi - 105%3B Plants - 244%3B Viruses - 0%3B Other Eukaryotes - 1855 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12185496, PMID:16895613, PMID:18775970, PMID:22087276, locus:2033108; locus_type=protein_coding
AT1G04527.1	chr1:002111064	0.0	C/2111064-2111147	AT1G04527.1 snoRNA AT1G04527 ID=AT1G04527.1; Parent=AT1G04527; Name=AT1G04527.1; Alias=AtsnoR43.1; Dbxref=PMID:20081206, PMID:22820990; locus_type=small_nucleolar_rna
AT1G06880.1	chr1:002111148	0.0	C/2111148-2111218	AT1G06880.1 tRNA AT1G06880 ID=AT1G06880.1; Parent=AT1G06880; Note=tRNA-Gly; computational_description=tRNA-Gly (anticodon: GCC); Dbxref=PMID:8980477, PMID:23066098, PMID:8980477, locus:3690695; Name=AT1G06880.1; locus_type=pre_trna
AT1G06890.3	chr1:002111585	0.0	C/2111585-2111605,2111761-2111859,2112064-2112336,2112438-2112599,2112706-2112838,2113071-2113138,2113237-2113421,2113918-2114038	AT1G06890.3 CDS AT1G06890 ID=AT1G06890.3; Parent=AT1G06890; Name=AT1G06890.3; Note=nodulin MtN21 /EamA-like transporter family protein; curator_summary=Nucleotide/sugar transporter family protein; conf_class=2; computational_description=nodulin MtN21 /EamA-like transporter family protein%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853)%3B BEST Arabidopsis thaliana protein match is: Nucleotide/sugar transporter family protein (TAIR:AT2G30460.2)%3B Has 2654 Blast hits to 2649 proteins in 293 species: Archae - 2%3B Bacteria - 105%3B Metazoa - 662%3B Fungi - 435%3B Plants - 1177%3B Viruses - 0%3B Other Eukaryotes - 273 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12644669, PMID:15295017, PMID:15456736, PMID:11152613, PMID:16618929, PMID:18775970, locus:2033097; locus_type=protein_coding
AT1G06890.4	chr1:002111585	0.0	C/2111585-2111602,2111761-2111859,2112064-2112336,2112438-2112599,2112706-2112838,2113071-2113138,2113237-2113421,2113918-2114038	AT1G06890.4 CDS AT1G06890 ID=AT1G06890.4; Parent=AT1G06890; Name=AT1G06890.4; Note=nodulin MtN21 /EamA-like transporter family protein; curator_summary=Nucleotide/sugar transporter family protein; computational_description=nodulin MtN21 /EamA-like transporter family protein%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853)%3B BEST Arabidopsis thaliana protein match is: Nucleotide/sugar transporter family protein (TAIR:AT2G30460.2)%3B Has 2654 Blast hits to 2649 proteins in 293 species: Archae - 2%3B Bacteria - 105%3B Metazoa - 662%3B Fungi - 435%3B Plants - 1177%3B Viruses - 0%3B Other Eukaryotes - 273 (source: NCBI BLink).; Dbxref=PMID:12644669, PMID:15295017, PMID:15456736, PMID:11152613, PMID:16618929, PMID:18775970, locus:2033097; locus_type=protein_coding
AT1G06890.1	chr1:002111728	0.0	C/2111728-2111859,2112064-2112336,2112438-2112599,2112706-2112838,2113071-2113138,2113237-2113421,2113918-2114038	AT1G06890.1 CDS AT1G06890 ID=AT1G06890.1; Parent=AT1G06890; Name=AT1G06890.1; Note=nodulin MtN21 /EamA-like transporter family protein; curator_summary=Nucleotide/sugar transporter family protein; conf_class=2; computational_description=nodulin MtN21 /EamA-like transporter family protein%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853)%3B BEST Arabidopsis thaliana protein match is: Nucleotide/sugar transporter family protein (TAIR:AT2G30460.2)%3B Has 2654 Blast hits to 2649 proteins in 293 species: Archae - 2%3B Bacteria - 105%3B Metazoa - 662%3B Fungi - 435%3B Plants - 1177%3B Viruses - 0%3B Other Eukaryotes - 273 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12644669, PMID:15295017, PMID:15456736, PMID:11152613, PMID:16618929, PMID:18775970, locus:2033097; locus_type=protein_coding
AT1G06890.2	chr1:002111728	0.0	C/2111728-2111859,2112064-2112336,2112438-2112599,2112706-2112838,2113071-2113138,2113237-2113421,2113918-2114038	AT1G06890.2 CDS AT1G06890 ID=AT1G06890.2; Parent=AT1G06890; Name=AT1G06890.2; Note=nodulin MtN21 /EamA-like transporter family protein; curator_summary=Nucleotide/sugar transporter family protein; conf_class=2; computational_description=nodulin MtN21 /EamA-like transporter family protein%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853)%3B BEST Arabidopsis thaliana protein match is: Nucleotide/sugar transporter family protein (TAIR:AT2G30460.2)%3B Has 2654 Blast hits to 2649 proteins in 293 species: Archae - 2%3B Bacteria - 105%3B Metazoa - 662%3B Fungi - 435%3B Plants - 1177%3B Viruses - 0%3B Other Eukaryotes - 273 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12644669, PMID:15295017, PMID:15456736, PMID:11152613, PMID:16618929, PMID:18775970, locus:2033097; locus_type=protein_coding
AT1G06900.1	chr1:002115155	0.0	C/2115155-2115398,2115521-2115642,2115730-2115883,2115974-2116077,2116193-2116396,2116512-2116694,2116824-2116973,2117051-2117430,2117517-2117666,2117822-2117978,2118235-2118383,2118485-2118718,2118846-2118965,2119055-2119150,2119284-2119357,2119666-2119778,2120011-2120057,2120156-2120231,2120318-2120635	AT1G06900.1 CDS AT1G06900 ID=AT1G06900.1; Parent=AT1G06900; Name=AT1G06900.1; Note=Insulinase (Peptidase family M16) family protein; conf_class=3; computational_description=Insulinase (Peptidase family M16) family protein%3B FUNCTIONS IN: metalloendopeptidase activity%2C catalytic activity%2C zinc ion binding%2C metal ion binding%3B INVOLVED IN: proteolysis%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase M16%2C zinc-binding site (InterPro:IPR001431)%2C Peptidase M16%2C C-terminal (InterPro:IPR007863)%2C Peptidase M16%2C N-terminal (InterPro:IPR011765)%2C Metalloenzyme%2C LuxS/M16 peptidase-like%2C metal-binding (InterPro:IPR011249)%2C Peptidase M16%2C core (InterPro:IPR011237)%3B BEST Arabidopsis thaliana protein match is: Insulinase (Peptidase family M16) family protein (TAIR:AT2G41790.1)%3B Has 36039 Blast hits to 19499 proteins in 2240 species: Archae - 83%3B Bacteria - 7236%3B Metazoa - 10750%3B Fungi - 4343%3B Plants - 1987%3B Viruses - 664%3B Other Eukaryotes - 10976 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2033082; locus_type=protein_coding
AT1G06910.1	chr1:002121099	0.0	W/2121099-2121681,2121788-2122074,2122437-2122621,2122708-2122768,2122858-2122914	AT1G06910.1 CDS AT1G06910 ID=AT1G06910.1; Parent=AT1G06910; Name=AT1G06910.1; Note=TRF-like 7; curator_summary=Arabidopsis thaliana myb family transcription factor (At1g06910); conf_class=2; symbol=TRFL7; full_name=TRF-like 7; computational_description=TRF-like 7 (TRFL7)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: response to jasmonic acid stimulus%2C response to salicylic acid stimulus%3B EXPRESSED IN: cultured cell%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%2C Homeodomain-related (InterPro:IPR012287)%3B BEST Arabidopsis thaliana protein match is: myb-like HTH transcriptional regulator family protein (TAIR:AT5G58340.2)%3B Has 82 Blast hits to 80 proteins in 22 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 5%3B Fungi - 5%3B Plants - 66%3B Viruses - 0%3B Other Eukaryotes - 6 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15364931, PMID:16463103, PMID:24377444, locus:2033071; locus_type=protein_coding
AT1G06920.1	chr1:002124854	0.0	C/2124854-2125801	AT1G06920.1 CDS AT1G06920 ID=AT1G06920.1; Parent=AT1G06920; Name=AT1G06920.1; Note=ovate family protein 4; curator_summary=Encodes OFP4%2C a member of the plant specific ovate family proteins. Members of this family have been shown to bind to KNOX and BELL- like TALE class homeodomain proteins. OFP4 interacts with KNAT7 to regulate secondary cell wall formation.; conf_class=1; symbol=OFP4; Alias=ATOFP4, ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4; full_name=ovate family protein 4; computational_description=ovate family protein 4 (OFP4)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF623 (InterPro:IPR006458)%3B BEST Arabidopsis thaliana protein match is: ovate family protein 2 (TAIR:AT2G30400.1)%3B Has 524 Blast hits to 514 proteins in 51 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 52%3B Fungi - 2%3B Plants - 429%3B Viruses - 0%3B Other Eukaryotes - 35 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15781858, PMID:16776300, PMID:20736450, PMID:21457372, PMID:21886836, PMID:24831118, locus:2033060; locus_type=protein_coding
AT1G06923.1	chr1:002126802	0.0	W/2126802-2127000,2127085-2127398	AT1G06923.1 CDS AT1G06923 ID=AT1G06923.1; Parent=AT1G06923; Name=AT1G06923.1; Note=transcription repressor OFP17-like protein; conf_class=1; computational_description=BEST Arabidopsis thaliana protein match is: ovate family protein 17 (TAIR:AT2G30395.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:1009023088; locus_type=protein_coding
AT1G04533.1	chr1:002127414	0.0	C/2127414-2127973	AT1G04533.1 antisense_lncRNA AT1G04533 ID=AT1G04533.1; Parent=AT1G04533; Name=AT1G04533.1; description=Natural antisense transcript overlaps with AT1G06923; Note=Natural antisense transcript overlaps with AT1G06923; locus_type=antisense_long_noncoding_rna
AT1G06925.1	chr1:002127704	0.0	C/2127704-2128037,2128151-2128216,2128580-2128611	AT1G06925.1 CDS AT1G06925 ID=AT1G06925.1; Parent=AT1G06925; Name=AT1G06925.1; Note=endonuclease/glycosyl hydrolase; conf_class=8; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B BEST Arabidopsis thaliana protein match is: Putative endonuclease or glycosyl hydrolase (TAIR:AT4G20480.1)%3B Has 152 Blast hits to 136 proteins in 9 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 152%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*; Dbxref=locus:504956220; locus_type=protein_coding
AT1G06930.1	chr1:002129163	0.0	W/2129163-2129672	AT1G06930.1 CDS AT1G06930 ID=AT1G06930.1; Parent=AT1G06930; Name=AT1G06930.1; Note=TPRXL; conf_class=1; computational_description=unknown protein%3B Has 4478 Blast hits to 355 proteins in 82 species: Archae - 0%3B Bacteria - 29%3B Metazoa - 379%3B Fungi - 125%3B Plants - 120%3B Viruses - 25%3B Other Eukaryotes - 3800 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:2033163; locus_type=protein_coding
AT1G06950.1	chr1:002130303	0.0	C/2130303-2130551,2130660-2131631,2131738-2131863,2132018-2132172,2132479-2132695,2132837-2132937,2133011-2133138,2133569-2133663,2133741-2133805,2134124-2134190,2134320-2134418,2134513-2134581,2134688-2134811,2134897-2134956,2135040-2135563	AT1G06950.1 CDS AT1G06950 ID=AT1G06950.1; Parent=AT1G06950; Name=AT1G06950.1; Note=translocon at the inner envelope membrane of chloroplasts 110; curator_summary=Encodes a protein thought to be a part of the translocon at the chloroplast inner envelope. Involved in protein import into the chloroplast and chloroplast biogenesis. C-terminal half of Tic110 functions as scaffolds for protein-protein interactions.; conf_class=2; symbol=TIC110; Alias=ATTIC110, ARABIDOPSIS THALIANA TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110; full_name=translocon at the inner envelope membrane of chloroplasts 110; computational_description=translocon at the inner envelope membrane of chloroplasts 110 (TIC110)%3B INVOLVED IN: protein import into chloroplast stroma%2C chloroplast organization%3B LOCATED IN: chloroplast%2C membrane%2C chloroplast envelope%2C Tic complex%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 14 growth stages%3B Has 131 Blast hits to 118 proteins in 52 species: Archae - 4%3B Bacteria - 6%3B Metazoa - 16%3B Fungi - 9%3B Plants - 66%3B Viruses - 0%3B Other Eukaryotes - 30 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11299338, PMID:19086173, PMID:19060109, PMID:19531596, PMID:17158958, PMID:18657235, PMID:19435889, PMID:20040542, PMID:20484004, PMID:22353577, PMID:22995285, PMID:23382192, PMID:23711301, locus:2007437; locus_type=protein_coding
AT1G06960.1	chr1:002135930	0.0	W/2135930-2136002,2136415-2136587,2136871-2136964,2137067-2137146,2137264-2137533	AT1G06960.1 CDS AT1G06960 ID=AT1G06960.1; Parent=AT1G06960; Name=AT1G06960.1; Note=RNA-binding (RRM/RBD/RNP motifs) family protein; conf_class=2; computational_description=RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: U2 small nuclear ribonucleoprotein B (TAIR:AT2G30260.1)%3B Has 1664 Blast hits to 1652 proteins in 256 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 815%3B Fungi - 369%3B Plants - 285%3B Viruses - 1%3B Other Eukaryotes - 192 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15987817, PMID:20736450, locus:2007417; locus_type=protein_coding
AT1G06960.2	chr1:002135930	0.0	W/2135930-2136002,2136415-2136587,2136871-2136964,2137067-2137218	AT1G06960.2 CDS AT1G06960 ID=AT1G06960.2; Parent=AT1G06960; Name=AT1G06960.2; Note=RNA-binding (RRM/RBD/RNP motifs) family protein; conf_class=1; computational_description=RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: U2 small nuclear ribonucleoprotein B (TAIR:AT2G30260.1)%3B Has 1664 Blast hits to 1652 proteins in 256 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 815%3B Fungi - 369%3B Plants - 285%3B Viruses - 1%3B Other Eukaryotes - 192 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15987817, PMID:20736450, locus:2007417; locus_type=protein_coding
AT1G06960.5	chr1:002135930	0.0	W/2135930-2136002,2136415-2136587,2136871-2137044	AT1G06960.5 CDS AT1G06960 ID=AT1G06960.5; Parent=AT1G06960; Name=AT1G06960.5; Note=RNA-binding (RRM/RBD/RNP motifs) family protein; computational_description=RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: U2 small nuclear ribonucleoprotein B (TAIR:AT2G30260.1)%3B Has 1664 Blast hits to 1652 proteins in 256 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 815%3B Fungi - 369%3B Plants - 285%3B Viruses - 1%3B Other Eukaryotes - 192 (source: NCBI BLink).; Dbxref=PMID:15987817, PMID:20736450, locus:2007417; locus_type=protein_coding
AT1G06960.3	chr1:002135982	0.0	W/2135982-2136002,2136450-2136587,2136871-2136964,2137067-2137146,2137264-2137533	AT1G06960.3 CDS AT1G06960 ID=AT1G06960.3; Parent=AT1G06960; Name=AT1G06960.3; Note=RNA-binding (RRM/RBD/RNP motifs) family protein; conf_class=2; computational_description=RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: U2 small nuclear ribonucleoprotein B (TAIR:AT2G30260.1)%3B Has 1664 Blast hits to 1652 proteins in 256 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 815%3B Fungi - 369%3B Plants - 285%3B Viruses - 1%3B Other Eukaryotes - 192 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15987817, PMID:20736450, locus:2007417; locus_type=protein_coding
AT1G06960.6	chr1:002135982	0.0	W/2135982-2136002,2136450-2136587,2136871-2136964,2137067-2137218	AT1G06960.6 CDS AT1G06960 ID=AT1G06960.6; Parent=AT1G06960; Name=AT1G06960.6; Note=RNA-binding (RRM/RBD/RNP motifs) family protein; computational_description=RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: U2 small nuclear ribonucleoprotein B (TAIR:AT2G30260.1)%3B Has 1664 Blast hits to 1652 proteins in 256 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 815%3B Fungi - 369%3B Plants - 285%3B Viruses - 1%3B Other Eukaryotes - 192 (source: NCBI BLink).; Dbxref=PMID:15987817, PMID:20736450, locus:2007417; locus_type=protein_coding
AT1G06960.4	chr1:002136765	0.0	W/2136765-2136773,2136871-2136964,2137067-2137146,2137264-2137533	AT1G06960.4 CDS AT1G06960 ID=AT1G06960.4; Parent=AT1G06960; Name=AT1G06960.4; Note=RNA-binding (RRM/RBD/RNP motifs) family protein; computational_description=RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: U2 small nuclear ribonucleoprotein B (TAIR:AT2G30260.1)%3B Has 1664 Blast hits to 1652 proteins in 256 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 815%3B Fungi - 369%3B Plants - 285%3B Viruses - 1%3B Other Eukaryotes - 192 (source: NCBI BLink).; Dbxref=PMID:15987817, PMID:20736450, locus:2007417; locus_type=protein_coding
AT1G06970.1	chr1:002138109	0.0	W/2138109-2138360,2138485-2139480,2139577-2140818	AT1G06970.1 CDS AT1G06970 ID=AT1G06970.1; Parent=AT1G06970; Name=AT1G06970.1; Note=cation/hydrogen exchanger 14; curator_summary=member of Putative Na+/H+ antiporter family; conf_class=2; symbol=CHX14; Alias=ATCHX14; full_name=cation/hydrogen exchanger 14; computational_description=cation/hydrogen exchanger 14 (CHX14)%3B FUNCTIONS IN: monovalent cation:hydrogen antiporter activity%2C sodium:hydrogen antiporter activity%3B INVOLVED IN: cation transport%3B LOCATED IN: integral to membrane%3B EXPRESSED IN: 6 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%3B CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153)%3B BEST Arabidopsis thaliana protein match is: Cation/hydrogen exchanger family protein (TAIR:AT2G30240.1)%3B Has 4532 Blast hits to 4506 proteins in 1259 species: Archae - 234%3B Bacteria - 3237%3B Metazoa - 0%3B Fungi - 116%3B Plants - 574%3B Viruses - 0%3B Other Eukaryotes - 371 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11500563, PMID:15347787, PMID:16607029, PMID:18676662, PMID:18775970, locus:2007392; locus_type=protein_coding
AT1G06980.1	chr1:002143248	0.0	C/2143248-2143757	AT1G06980.1 CDS AT1G06980 ID=AT1G06980.1; Parent=AT1G06980; Name=AT1G06980.1; Note=6%2C7-dimethyl-8-ribityllumazine synthase; conf_class=1; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: sepal%2C male gametophyte%2C carpel%3B EXPRESSED DURING: 4 anthesis%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30230.1)%3B Has 159 Blast hits to 159 proteins in 13 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 159%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11598216, PMID:20736450, locus:2007377; locus_type=protein_coding
AT1G06990.1	chr1:002148393	0.0	W/2148393-2149022,2149150-2149411,2149819-2150009	AT1G06990.1 CDS AT1G06990 ID=AT1G06990.1; Parent=AT1G06990; Name=AT1G06990.1; Note=GDSL-like Lipase/Acylhydrolase superfamily protein; conf_class=2; computational_description=GDSL-like Lipase/Acylhydrolase superfamily protein%3B FUNCTIONS IN: hydrolase activity%2C acting on ester bonds%2C carboxylesterase activity%3B INVOLVED IN: lipid metabolic process%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: petal%2C leaf whorl%2C sepal%2C flower%3B EXPRESSED DURING: 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Lipase%2C GDSL (InterPro:IPR001087)%3B BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase family protein (TAIR:AT2G24560.1)%3B Has 3486 Blast hits to 3444 proteins in 207 species: Archae - 0%3B Bacteria - 314%3B Metazoa - 0%3B Fungi - 25%3B Plants - 3124%3B Viruses - 0%3B Other Eukaryotes - 23 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:20736450, locus:2007402; locus_type=protein_coding
AT1G07000.1	chr1:002150398	0.0	C/2150398-2151705,2151814-2152305	AT1G07000.1 CDS AT1G07000 ID=AT1G07000.1; Parent=AT1G07000; Name=AT1G07000.1; Note=exocyst subunit exo70 family protein B2; curator_summary=A member of EXO70 gene family%2C putative exocyst subunits%2C conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes%2C which can be classified into eight clusters on the phylogenetic tree.; conf_class=2; symbol=EXO70B2; Alias=ATEXO70B2, exocyst subunit exo70 family protein B2; full_name=exocyst subunit exo70 family protein B2; computational_description=exocyst subunit exo70 family protein B2 (EXO70B2)%3B INVOLVED IN: exocytosis%2C vesicle docking involved in exocytosis%3B LOCATED IN: cytosol%2C nucleus%2C plasma membrane%2C exocyst%3B EXPRESSED IN: 19 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140)%3B BEST Arabidopsis thaliana protein match is: exocyst subunit exo70 family protein B1 (TAIR:AT5G58430.1)%3B Has 788 Blast hits to 778 proteins in 72 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 129%3B Fungi - 10%3B Plants - 642%3B Viruses - 0%3B Other Eukaryotes - 7 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12218065, PMID:12953064, PMID:15235117, PMID:16942608, PMID:18650403, PMID:18829981, PMID:19895414, PMID:20736450, PMID:21193573, PMID:21199889, PMID:23170036, locus:2007347; locus_type=protein_coding
AT1G07010.1	chr1:002152949	0.0	W/2152949-2153132,2153223-2153323,2153492-2153605,2153750-2153962,2154052-2154187,2154274-2154449,2154547-2154635,2154719-2154788,2154882-2154968	AT1G07010.1 CDS AT1G07010 ID=AT1G07010.1; Parent=AT1G07010; Name=AT1G07010.1; Note=Calcineurin-like metallo-phosphoesterase superfamily protein; conf_class=2; symbol=SLP1; Alias=AtSLP1; full_name=Shewenella-like protein phosphatase 1; computational_description=Calcineurin-like metallo-phosphoesterase superfamily protein%3B FUNCTIONS IN: hydrolase activity%2C protein serine/threonine phosphatase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: peroxisome%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843)%3B BEST Arabidopsis thaliana protein match is: Calcineurin-like metallo-phosphoesterase superfamily protein (TAIR:AT1G18480.1)%3B Has 774 Blast hits to 772 proteins in 270 species: Archae - 8%3B Bacteria - 399%3B Metazoa - 0%3B Fungi - 31%3B Plants - 105%3B Viruses - 3%3B Other Eukaryotes - 228 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12154131, PMID:14576160, PMID:18156295, PMID:21960277, PMID:21976480, locus:2007472; locus_type=protein_coding
AT1G07010.2	chr1:002152949	0.0	W/2152949-2153132,2153223-2153323,2153504-2153605,2153750-2153962,2154052-2154187,2154274-2154449,2154547-2154635,2154719-2154788,2154882-2154968	AT1G07010.2 CDS AT1G07010 ID=AT1G07010.2; Parent=AT1G07010; Name=AT1G07010.2; Note=Calcineurin-like metallo-phosphoesterase superfamily protein; conf_class=2; symbol=SLP1; Alias=AtSLP1; full_name=Shewenella-like protein phosphatase 1; computational_description=Calcineurin-like metallo-phosphoesterase superfamily protein%3B FUNCTIONS IN: hydrolase activity%2C protein serine/threonine phosphatase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: peroxisome%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843)%3B BEST Arabidopsis thaliana protein match is: Calcineurin-like metallo-phosphoesterase superfamily protein (TAIR:AT1G18480.1)%3B Has 774 Blast hits to 772 proteins in 270 species: Archae - 8%3B Bacteria - 399%3B Metazoa - 0%3B Fungi - 31%3B Plants - 105%3B Viruses - 3%3B Other Eukaryotes - 228 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12154131, PMID:14576160, PMID:18156295, PMID:21960277, PMID:21976480, locus:2007472; locus_type=protein_coding
AT1G07010.3	chr1:002152949	0.0	W/2152949-2153132,2153196-2153308,2153391-2153423,2153504-2153605,2153750-2153962,2154052-2154187,2154274-2154449,2154547-2154635,2154719-2154788,2154882-2154968	AT1G07010.3 CDS AT1G07010 ID=AT1G07010.3; Parent=AT1G07010; Name=AT1G07010.3; Note=Calcineurin-like metallo-phosphoesterase superfamily protein; conf_class=3; symbol=SLP1; Alias=AtSLP1; full_name=Shewenella-like protein phosphatase 1; computational_description=Calcineurin-like metallo-phosphoesterase superfamily protein%3B FUNCTIONS IN: hydrolase activity%2C protein serine/threonine phosphatase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: peroxisome%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843)%3B BEST Arabidopsis thaliana protein match is: Calcineurin-like metallo-phosphoesterase superfamily protein (TAIR:AT1G18480.1)%3B Has 774 Blast hits to 772 proteins in 270 species: Archae - 8%3B Bacteria - 399%3B Metazoa - 0%3B Fungi - 31%3B Plants - 105%3B Viruses - 3%3B Other Eukaryotes - 228 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12154131, PMID:14576160, PMID:18156295, PMID:21960277, PMID:21976480, locus:2007472; locus_type=protein_coding
AT1G04537.1	chr1:002155213	0.0	W/2155213-2155622	AT1G04537.1 antisense_lncRNA AT1G04537 ID=AT1G04537.1; Parent=AT1G04537; Name=AT1G04537.1; description=Natural antisense transcript overlaps with AT1G07020; Note=Natural antisense transcript overlaps with AT1G07020; locus_type=antisense_long_noncoding_rna
AT1G07020.1	chr1:002155319	0.0	C/2155319-2155755,2155878-2155884	AT1G07020.1 CDS AT1G07020 ID=AT1G07020.1; Parent=AT1G07020; Name=AT1G07020.1; Note=hypothetical protein; conf_class=1; computational_description=unknown protein%3B Has 39 Blast hits to 39 proteins in 17 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 6%3B Fungi - 3%3B Plants - 28%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:18775970, PMID:20736450, locus:2007457; locus_type=protein_coding
AT1G04543.1	chr1:002156201	0.0	W/2156201-2156876	AT1G04543.1 transcript_region AT1G04543 ID=AT1G04543.1; Parent=AT1G04543; computational_description=novel transcribed region%3B detected in root%2C carpel%2C root apical meristem%2C receptacle%2C leaf%2C dark-grown seedling%2C light-grown seedling%2C flower; Name=AT1G04543.1; locus_type=novel_transcribed_region
AT1G04547.1	chr1:002156221	0.0	C/2156221-2156306	AT1G04547.1 snoRNA AT1G04547 ID=AT1G04547.1; Parent=AT1G04547; Name=AT1G04547.1; Alias=AtsnoR43.11; Dbxref=PMID:20081206, PMID:22820990; locus_type=small_nucleolar_rna
AT1TE07050	chr1:002157095	0.0	W/2157095-2157660	AT1TE07050 transposable_element AT1TE07050 ID=AT1TE07050; Name=AT1TE07050; Alias=ATCOPIA58
AT1G07025.1	chr1:002157658	0.0	C/2157658-2158158	AT1G07025.1 CDS AT1G07025 ID=AT1G07025.1; Parent=AT1G07025; Name=AT1G07025.1; Note=Mitochondrial substrate carrier family protein; conf_class=10; computational_description=Mitochondrial substrate carrier family protein%3B FUNCTIONS IN: binding%3B INVOLVED IN: transport%2C mitochondrial transport%2C transmembrane transport%3B LOCATED IN: mitochondrial inner membrane%2C membrane%3B CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993)%2C Mitochondrial substrate/solute carrier (InterPro:IPR018108)%3B BEST Arabidopsis thaliana protein match is: Mitochondrial substrate carrier family protein (TAIR:AT1G07030.1)%3B Has 2535 Blast hits to 2317 proteins in 250 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1486%3B Fungi - 476%3B Plants - 406%3B Viruses - 0%3B Other Eukaryotes - 167 (source: NCBI BLink).; Dbxref=PMID:15003237, locus:505006105; locus_type=protein_coding
AT1G07030.1	chr1:002158631	0.0	C/2158631-2158837,2159751-2160524	AT1G07030.1 CDS AT1G07030 ID=AT1G07030.1; Parent=AT1G07030; Name=AT1G07030.1; Note=Mitochondrial substrate carrier family protein; conf_class=2; computational_description=Mitochondrial substrate carrier family protein%3B FUNCTIONS IN: binding%3B INVOLVED IN: transport%2C mitochondrial transport%2C transmembrane transport%3B LOCATED IN: mitochondrial inner membrane%2C membrane%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067)%2C Mitochondrial substrate carrier (InterPro:IPR001993)%2C Mitochondrial substrate/solute carrier (InterPro:IPR018108)%3B BEST Arabidopsis thaliana protein match is: Mitochondrial substrate carrier family protein (TAIR:AT2G30160.1)%3B Has 27351 Blast hits to 14015 proteins in 457 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 11451%3B Fungi - 7735%3B Plants - 5292%3B Viruses - 0%3B Other Eukaryotes - 2867 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12586869, PMID:15003237, PMID:20736450, locus:2007387; locus_type=protein_coding
AT1G07040.1	chr1:002161225	0.0	C/2161225-2161323,2161490-2161644,2161722-2161885,2161975-2162096,2162171-2162386,2162477-2162629,2162829-2163035	AT1G07040.1 CDS AT1G07040 ID=AT1G07040.1; Parent=AT1G07040; Name=AT1G07040.1; Note=plant/protein; conf_class=2; computational_description=unknown protein%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27030.1)%3B Has 540 Blast hits to 538 proteins in 187 species: Archae - 0%3B Bacteria - 333%3B Metazoa - 0%3B Fungi - 0%3B Plants - 67%3B Viruses - 0%3B Other Eukaryotes - 140 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:18650403, PMID:18775970, locus:2007372; locus_type=protein_coding
AT1G07050.1	chr1:002164327	0.0	C/2164327-2164353,2164482-2164634,2164726-2165133	AT1G07050.1 CDS AT1G07050 ID=AT1G07050.1; Parent=AT1G07050; Name=AT1G07050.1; Note=CCT motif family protein; conf_class=2; computational_description=CCT motif family protein%3B CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402)%3B BEST Arabidopsis thaliana protein match is: CCT motif family protein (TAIR:AT4G25990.1)%3B Has 1772 Blast hits to 1772 proteins in 105 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1%3B Fungi - 2%3B Plants - 1711%3B Viruses - 0%3B Other Eukaryotes - 58 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15695462, PMID:18216856, locus:2007482; locus_type=protein_coding
AT1G07050.2	chr1:002164446	0.0	C/2164446-2164634,2164726-2165133	AT1G07050.2 CDS AT1G07050 ID=AT1G07050.2; Parent=AT1G07050; Name=AT1G07050.2; Note=CCT motif family protein; computational_description=CCT motif family protein%3B CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402)%3B BEST Arabidopsis thaliana protein match is: CCT motif family protein (TAIR:AT4G25990.1)%3B Has 1772 Blast hits to 1772 proteins in 105 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1%3B Fungi - 2%3B Plants - 1711%3B Viruses - 0%3B Other Eukaryotes - 58 (source: NCBI BLink).; Dbxref=PMID:15695462, PMID:18216856, locus:2007482; locus_type=protein_coding
AT1G07051.1	chr1:002165517	0.0	W/2165517-2165746	AT1G07051.1 miRNA_primary_transcript AT1G07051 ID=AT1G07051.1; Parent=AT1G07051; Alias=p_MI0005410; Name=ath-MIR847; symbol=MIR847A; curator_summary=Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UCACUCCUCUUCUUCUUGAUG; Note=microRNA ath-MIR847 precursor; full_name=microRNA847A; Dbxref=locus:4515102503, locus:4515102503; locus_type=mirna
ath-miR847	chr1:002165675	0.0	W/2165675-2165695	ath-miR847 miRNA ath-miR847 ID=ath-miR847; Alias=MIMAT0004278; Name=ath-miR847; Derives_from=AT1G07051.1; Note=microRNA ath-miR847; computational_description=mature miRNA accession:MIMAT0004278
AT1G07060.2	chr1:002166655	0.0	C/2166655-2166854,2167206-2167347,2167671-2167814,2167965-2168172,2168258-2168397	AT1G07060.2 CDS AT1G07060 ID=AT1G07060.2; Parent=AT1G07060; Name=AT1G07060.2; Note=hypothetical protein; symbol=DFO; Alias=ATDFO; full_name=DSB formation; computational_description=unknown protein%3B Has 30 Blast hits to 30 proteins in 10 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 30%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=PMID:18667720, PMID:18775970, PMID:22694475, locus:2007442; locus_type=protein_coding
AT1G07060.3	chr1:002166655	0.0	C/2166655-2166842,2167206-2167347,2167671-2167814,2167965-2168172,2168258-2168397	AT1G07060.3 CDS AT1G07060 ID=AT1G07060.3; Parent=AT1G07060; Name=AT1G07060.3; Note=hypothetical protein; symbol=DFO; Alias=ATDFO; full_name=DSB formation; computational_description=unknown protein%3B Has 30 Blast hits to 30 proteins in 10 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 30%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=PMID:18667720, PMID:18775970, PMID:22694475, locus:2007442; locus_type=protein_coding
AT1G04557.1	chr1:002166659	0.0	W/2166659-2166864	AT1G04557.1 lnc_RNA AT1G04557 ID=AT1G04557.1; Parent=AT1G04557; Name=AT1G04557.1; locus_type=long_noncoding_rna
AT1G07060.1	chr1:002167138	0.0	C/2167138-2167347,2167671-2167814,2167965-2168172,2168258-2168397	AT1G07060.1 CDS AT1G07060 ID=AT1G07060.1; Parent=AT1G07060; Name=AT1G07060.1; Note=hypothetical protein; conf_class=1; symbol=DFO; Alias=ATDFO; full_name=DSB formation; computational_description=unknown protein%3B Has 30 Blast hits to 30 proteins in 10 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 30%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:18667720, PMID:18775970, PMID:22694475, locus:2007442; locus_type=protein_coding
AT1G07060.4	chr1:002167138	0.0	C/2167138-2167347,2167671-2167814,2167965-2168126	AT1G07060.4 CDS AT1G07060 ID=AT1G07060.4; Parent=AT1G07060; Name=AT1G07060.4; Note=hypothetical protein; symbol=DFO; Alias=ATDFO; full_name=DSB formation; computational_description=unknown protein%3B Has 30 Blast hits to 30 proteins in 10 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 30%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=PMID:18667720, PMID:18775970, PMID:22694475, locus:2007442; locus_type=protein_coding
AT1G07070.1	chr1:002168652	0.0	W/2168652-2168683,2168909-2168944,2169341-2169569,2169662-2169703	AT1G07070.1 CDS AT1G07070 ID=AT1G07070.1; Parent=AT1G07070; Name=AT1G07070.1; Note=Ribosomal protein L35Ae family protein; conf_class=2; computational_description=Ribosomal protein L35Ae family protein%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%2C ribosome biogenesis%3B LOCATED IN: ribosome%2C cytosolic large ribosomal subunit%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L35Ae (InterPro:IPR001780)%2C Ribosomal protein L35Ae%2C conserved site (InterPro:IPR018266)%3B BEST Arabidopsis thaliana protein match is: Ribosomal protein L35Ae family protein (TAIR:AT1G74270.1)%3B Has 767 Blast hits to 767 proteins in 257 species: Archae - 25%3B Bacteria - 0%3B Metazoa - 324%3B Fungi - 146%3B Plants - 149%3B Viruses - 0%3B Other Eukaryotes - 123 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15310832, PMID:16297073, PMID:17934214, PMID:20736450, locus:2007422; locus_type=protein_coding
AT1G07080.1	chr1:002170069	0.0	W/2170069-2170350,2170524-2170589,2170702-2170842,2171065-2171157,2171646-2171861	AT1G07080.1 CDS AT1G07080 ID=AT1G07080.1; Parent=AT1G07080; Name=AT1G07080.1; Note=Thioredoxin superfamily protein; conf_class=2; computational_description=Thioredoxin superfamily protein%3B FUNCTIONS IN: catalytic activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: vacuole%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Gamma interferon inducible lysosomal thiol reductase GILT (InterPro:IPR004911)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B BEST Arabidopsis thaliana protein match is: gamma interferon responsive lysosomal thiol (GILT) reductase family protein (TAIR:AT5G01580.1)%3B Has 470 Blast hits to 463 proteins in 91 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 320%3B Fungi - 0%3B Plants - 101%3B Viruses - 0%3B Other Eukaryotes - 49 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15466229, PMID:18775970, locus:2007407; locus_type=protein_coding
AT1G07090.1	chr1:002174202	0.0	C/2174202-2174792	AT1G07090.1 CDS AT1G07090 ID=AT1G07090.1; Parent=AT1G07090; Name=AT1G07090.1; Note=LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); conf_class=1; symbol=LSH6; full_name=LIGHT SENSITIVE HYPOCOTYLS 6; computational_description=LIGHT SENSITIVE HYPOCOTYLS 6 (LSH6)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 (InterPro:IPR006936)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF640) (TAIR:AT5G58500.1)%3B Has 311 Blast hits to 311 proteins in 18 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 14%3B Fungi - 0%3B Plants - 297%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14871309, PMID:18650403, locus:2007382; locus_type=protein_coding
AT1G07100.1	chr1:002177885	0.0	W/2177885-2177958	AT1G07100.1 tRNA AT1G07100 ID=AT1G07100.1; Parent=AT1G07100; Note=tRNA-Ile; computational_description=tRNA-Ile (anticodon: TAT); Dbxref=PMID:8980477, PMID:23066098, PMID:8980477, locus:3686017; Name=AT1G07100.1; locus_type=pre_trna
AT1G07110.1	chr1:002178363	0.0	C/2178363-2178440,2178555-2178620,2178771-2178834,2178915-2178983,2179108-2179199,2179293-2179355,2179942-2180017,2180254-2180351,2180577-2180624,2180751-2180825,2180954-2181011,2181086-2181177,2181379-2181456,2181529-2181582,2181761-2181814,2181903-2181932,2182038-2182136,2182325-2182420,2182516-2182716,2182811-2183026,2183217-2183509,2183630-2183693,2183810-2183980	AT1G07110.1 CDS AT1G07110 ID=AT1G07110.1; Parent=AT1G07110; Name=AT1G07110.1; Note=fructose-2%2C6-bisphosphatase; curator_summary=Encodes the bifunctional enzyme fructose-6-phosphate 2-kinase/fructose-2%2C6-bisphosphatase.; conf_class=3; symbol=F2KP; Alias=ATF2KP, FKFBP; full_name=fructose-2%2C6-bisphosphatase; computational_description=fructose-2%2C6-bisphosphatase (F2KP)%3B FUNCTIONS IN: fructose-2%2C6-bisphosphate 2-phosphatase activity%3B INVOLVED IN: N-terminal protein myristoylation%2C fructose metabolic process%3B LOCATED IN: cytosol%2C plasma membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Bifunctional 6-phosphofructo-2-kinase/fructose-2%2C 6-bisphosphate 2-phosphatase (InterPro:IPR016260)%2C Phosphoglycerate/bisphosphoglycerate mutase%2C active site (InterPro:IPR001345)%2C Fructose-2%2C6-bisphosphatase (InterPro:IPR003094)%2C Carbohydrate-binding-like fold (InterPro:IPR013784)%2C Glycoside hydrolase%2C carbohydrate-binding (InterPro:IPR002044)%2C Histidine phosphatase superfamily%2C clade-1 (InterPro:IPR013078)%2C 6-phosphofructo-2-kinase (InterPro:IPR013079)%3B BEST Arabidopsis thaliana protein match is: Plant transposase (Ptta/En/Spm family) (TAIR:AT3G30200.1)%3B Has 5078 Blast hits to 4946 proteins in 1364 species: Archae - 8%3B Bacteria - 3312%3B Metazoa - 533%3B Fungi - 529%3B Plants - 140%3B Viruses - 0%3B Other Eukaryotes - 556 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10899575, PMID:11672433, PMID:11402203, PMID:12912986, PMID:14871307, PMID:16771775, PMID:18433157, PMID:18650403, PMID:18775970, PMID:22645532, PMID:25602028, locus:2007367; locus_type=protein_coding
AT1G07119.1	chr1:002184318	0.0	W/2184318-2187941	AT1G07119.1 antisense_lncRNA AT1G07119 ID=AT1G07119.1; Parent=AT1G07119; curator_summary=Potential natural antisense gene%2C locus overlaps with AT1G07120; Dbxref=locus:4515102504; Name=AT1G07119.1; description=Natural antisense transcript overlaps with AT1G07120; Note=Natural antisense transcript overlaps with AT1G07120; locus_type=antisense_long_noncoding_rna
AT1G07119.2	chr1:002184318	0.0	W/2184318-2187941	AT1G07119.2 antisense_lncRNA AT1G07119 ID=AT1G07119.2; Parent=AT1G07119; Name=AT1G07119.2; description=Natural antisense transcript overlaps with AT1G07120; curator_summary=Potential natural antisense gene%2C locus overlaps with AT1G07120; Note=Natural antisense transcript overlaps with AT1G07120; Dbxref=locus:4515102504; locus_type=antisense_long_noncoding_rna
AT1G07119.3	chr1:002184318	0.0	W/2184318-2187941	AT1G07119.3 antisense_lncRNA AT1G07119 ID=AT1G07119.3; Parent=AT1G07119; Name=AT1G07119.3; description=Natural antisense transcript overlaps with AT1G07120; curator_summary=Potential natural antisense gene%2C locus overlaps with AT1G07120; Note=Natural antisense transcript overlaps with AT1G07120; Dbxref=locus:4515102504; locus_type=antisense_long_noncoding_rna
AT1G07119.4	chr1:002184327	0.0	W/2184327-2187941	AT1G07119.4 antisense_lncRNA AT1G07119 ID=AT1G07119.4; Parent=AT1G07119; Name=AT1G07119.4; description=Natural antisense transcript overlaps with AT1G07120; curator_summary=Potential natural antisense gene%2C locus overlaps with AT1G07120; Note=Natural antisense transcript overlaps with AT1G07120; Dbxref=locus:4515102504; locus_type=antisense_long_noncoding_rna
AT1G07120.1	chr1:002184874	0.0	C/2184874-2184954,2185034-2185165,2185399-2185510,2185600-2185916,2186044-2186580	AT1G07120.1 CDS AT1G07120 ID=AT1G07120.1; Parent=AT1G07120; Name=AT1G07120.1; Note=CHUP1-like protein; conf_class=3; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast envelope%3B EXPRESSED IN: inflorescence meristem%2C petal%2C leaf whorl%2C flower%3B EXPRESSED DURING: 4 anthesis%2C petal differentiation and expansion stage%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G18570.1)%3B Has 288 Blast hits to 260 proteins in 50 species: Archae - 0%3B Bacteria - 8%3B Metazoa - 27%3B Fungi - 15%3B Plants - 163%3B Viruses - 0%3B Other Eukaryotes - 75 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14615600, PMID:18723362, locus:2007477; locus_type=protein_coding
AT1G07119.5	chr1:002185048	0.0	W/2185048-2187936	AT1G07119.5 antisense_lncRNA AT1G07119 ID=AT1G07119.5; Parent=AT1G07119; Name=AT1G07119.5; description=Natural antisense transcript overlaps with AT1G07120; curator_summary=Potential natural antisense gene%2C locus overlaps with AT1G07120; Note=Natural antisense transcript overlaps with AT1G07120; Dbxref=locus:4515102504; locus_type=antisense_long_noncoding_rna
AT1G07120.2	chr1:002185387	0.0	C/2185387-2185510,2185600-2185916,2186044-2186580	AT1G07120.2 CDS AT1G07120 ID=AT1G07120.2; Parent=AT1G07120; Name=AT1G07120.2; Note=CHUP1-like protein; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast envelope%3B EXPRESSED IN: inflorescence meristem%2C petal%2C leaf whorl%2C flower%3B EXPRESSED DURING: 4 anthesis%2C petal differentiation and expansion stage%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G18570.1)%3B Has 288 Blast hits to 260 proteins in 50 species: Archae - 0%3B Bacteria - 8%3B Metazoa - 27%3B Fungi - 15%3B Plants - 163%3B Viruses - 0%3B Other Eukaryotes - 75 (source: NCBI BLink).; Dbxref=PMID:14615600, PMID:18723362, locus:2007477; locus_type=protein_coding
AT1G04563.1	chr1:002186933	0.0	W/2186933-2187181	AT1G04563.1 lnc_RNA AT1G04563 ID=AT1G04563.1; Parent=AT1G04563; Name=AT1G04563.1; locus_type=long_noncoding_rna
AT1G07128.1	chr1:002187566	0.0	C/2187566-2188734	AT1G07128.1 antisense_lncRNA AT1G07128 ID=AT1G07128.1; Parent=AT1G07128; curator_summary=Potential natural antisense gene%2C locus overlaps with AT1G07130; Dbxref=locus:6530298133; Name=AT1G07128.1; description=Natural antisense transcript overlaps with AT1G07130; Note=Natural antisense transcript overlaps with AT1G07130; locus_type=antisense_long_noncoding_rna
AT1G07130.1	chr1:002187928	0.0	W/2187928-2188410	AT1G07130.1 CDS AT1G07130 ID=AT1G07130.1; Parent=AT1G07130; Name=AT1G07130.1; Note=Nucleic acid-binding%2C OB-fold-like protein; curator_summary=Encodes a protein with similarity to yeast STN1%2C an OB fold protein involved in protecting yeast telomeres. In Arabidopsis%2C loss of STN1 function mutations exhibit gross morphological abnormalities and defects in telomere architecture and maintenance. STN1 likely plays a role in telomere end capping.; conf_class=1; symbol=STN1; computational_description=STN1%3B FUNCTIONS IN: nucleic acid binding%3B INVOLVED IN: telomere capping%3B LOCATED IN: nuclear chromosome%2C telomeric region%3B EXPRESSED IN: root%2C seed%3B EXPRESSED DURING: E expanded cotyledon stage%3B CONTAINS InterPro DOMAIN/s: Nucleic acid-binding%2C OB-fold-like (InterPro:IPR016027)%2C Nucleic acid-binding%2C OB-fold (InterPro:IPR012340)%2C Nucleic acid binding%2C OB-fold%2C tRNA/helicase-type (InterPro:IPR004365)%3B Has 110 Blast hits to 110 proteins in 42 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 57%3B Fungi - 2%3B Plants - 47%3B Viruses - 0%3B Other Eukaryotes - 4 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:19064932, PMID:19854131, PMID:22158468, PMID:23460576, PMID:23572541, PMID:22810623, PMID:24846723, PMID:25329641, PMID:25299252, locus:2007352; locus_type=protein_coding
AT1TE07150	chr1:002188895	0.0	C/2188895-2189266	AT1TE07150 transposable_element AT1TE07150 ID=AT1TE07150; Name=AT1TE07150; Alias=BRODYAGA1A
AT1G07135.1	chr1:002190157	0.0	C/2190157-2190624	AT1G07135.1 CDS AT1G07135 ID=AT1G07135.1; Parent=AT1G07135; Name=AT1G07135.1; Note=glycine-rich protein; conf_class=1; computational_description=glycine-rich protein%3B Has 22251 Blast hits to 8348 proteins in 789 species: Archae - 21%3B Bacteria - 7328%3B Metazoa - 6126%3B Fungi - 1280%3B Plants - 3980%3B Viruses - 524%3B Other Eukaryotes - 2992 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12068095, PMID:12805588, PMID:16005291, PMID:17337630, PMID:18684332, PMID:18783601, PMID:20736450, locus:505006106; locus_type=protein_coding
AT1TE07155	chr1:002191159	0.0	W/2191159-2191271	AT1TE07155 transposable_element AT1TE07155 ID=AT1TE07155; Name=AT1TE07155; Alias=HELITRONY1D
AT1TE07160	chr1:002191272	0.0	W/2191272-2191794	AT1TE07160 transposable_element AT1TE07160 ID=AT1TE07160; Name=AT1TE07160; Alias=ATREP3
AT1TE07165	chr1:002191795	0.0	W/2191795-2191972	AT1TE07165 transposable_element AT1TE07165 ID=AT1TE07165; Name=AT1TE07165; Alias=ATREP10D
AT1G07140.1	chr1:002192360	0.0	C/2192360-2192613,2193030-2193155,2193262-2193413,2193534-2193688	AT1G07140.1 CDS AT1G07140 ID=AT1G07140.1; Parent=AT1G07140; Name=AT1G07140.1; Note=Pleckstrin homology (PH) domain superfamily protein; curator_summary=Encodes a putative Ran-binding protein (siRanBP).; conf_class=2; symbol=SIRANBP; computational_description=SIRANBP%3B FUNCTIONS IN: Ran GTPase binding%3B INVOLVED IN: intracellular transport%2C protein import into nucleus%2C translocation%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 16 growth stages%3B CONTAINS InterPro DOMAIN/s: Ran binding protein 1 (InterPro:IPR000156)%2C Pleckstrin homology-type (InterPro:IPR011993)%3B BEST Arabidopsis thaliana protein match is: Pleckstrin homology (PH) domain superfamily protein (TAIR:AT2G30060.1)%3B Has 2132 Blast hits to 1580 proteins in 275 species: Archae - 9%3B Bacteria - 76%3B Metazoa - 1014%3B Fungi - 369%3B Plants - 163%3B Viruses - 39%3B Other Eukaryotes - 462 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9025305, PMID:18577427, PMID:18775970, PMID:20118269, PMID:20736450, locus:2007467; locus_type=protein_coding
AT1G07150.2	chr1:002193983	0.0	C/2193983-2194089,2194362-2195736	AT1G07150.2 CDS AT1G07150 ID=AT1G07150.2; Parent=AT1G07150; Name=AT1G07150.2; Note=mitogen-activated protein kinase kinase kinase 13; curator_summary=member of MEKK subfamily; conf_class=4; symbol=MAPKKK13; full_name=mitogen-activated protein kinase kinase kinase 13; computational_description=mitogen-activated protein kinase kinase kinase 13 (MAPKKK13)%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B EXPRESSED IN: 8 plant structures%3B EXPRESSED DURING: LP.04 four leaves visible%2C 4 anthesis%2C LP.10 ten leaves visible%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: mitogen-activated protein kinase kinase kinase 14 (TAIR:AT2G30040.1)%3B Has 115480 Blast hits to 114239 proteins in 3527 species: Archae - 169%3B Bacteria - 12227%3B Metazoa - 43932%3B Fungi - 11802%3B Plants - 28183%3B Viruses - 583%3B Other Eukaryotes - 18584 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:14576160, PMID:15375205, PMID:16214899, PMID:20736450, PMID:21477822, locus:2007337; locus_type=protein_coding
AT1G07150.1	chr1:002194279	0.0	C/2194279-2195778	AT1G07150.1 CDS AT1G07150 ID=AT1G07150.1; Parent=AT1G07150; Name=AT1G07150.1; Note=mitogen-activated protein kinase kinase kinase 13; curator_summary=member of MEKK subfamily; conf_class=4; symbol=MAPKKK13; full_name=mitogen-activated protein kinase kinase kinase 13; computational_description=mitogen-activated protein kinase kinase kinase 13 (MAPKKK13)%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B EXPRESSED IN: 8 plant structures%3B EXPRESSED DURING: LP.04 four leaves visible%2C 4 anthesis%2C LP.10 ten leaves visible%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: mitogen-activated protein kinase kinase kinase 14 (TAIR:AT2G30040.1)%3B Has 115480 Blast hits to 114239 proteins in 3527 species: Archae - 169%3B Bacteria - 12227%3B Metazoa - 43932%3B Fungi - 11802%3B Plants - 28183%3B Viruses - 583%3B Other Eukaryotes - 18584 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:14576160, PMID:15375205, PMID:16214899, PMID:20736450, PMID:21477822, locus:2007337; locus_type=protein_coding
AT1G07160.1	chr1:002198155	0.0	C/2198155-2198499,2198575-2198919,2199226-2199678	AT1G07160.1 CDS AT1G07160 ID=AT1G07160.1; Parent=AT1G07160; Name=AT1G07160.1; Note=Protein phosphatase 2C family protein; conf_class=1; computational_description=Protein phosphatase 2C family protein%3B FUNCTIONS IN: protein serine/threonine phosphatase activity%2C catalytic activity%3B INVOLVED IN: protein amino acid dephosphorylation%3B LOCATED IN: chloroplast%2C protein serine/threonine phosphatase complex%3B EXPRESSED IN: sperm cell%3B CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (InterPro:IPR000222)%2C Protein phosphatase 2C-related (InterPro:IPR001932)%2C Protein phosphatase 2C (InterPro:IPR015655)%2C Protein phosphatase 2C%2C N-terminal (InterPro:IPR014045)%3B BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT2G30020.1)%3B Has 7376 Blast hits to 7203 proteins in 674 species: Archae - 10%3B Bacteria - 746%3B Metazoa - 1767%3B Fungi - 814%3B Plants - 2696%3B Viruses - 11%3B Other Eukaryotes - 1332 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12068129, PMID:12609040, PMID:14576160, PMID:15130549, PMID:16798948, PMID:19021904, PMID:20736450, PMID:21203456, locus:2007327; locus_type=protein_coding
AT1TE07180	chr1:002199212	0.0	C/2199212-2199584	AT1TE07180 transposable_element AT1TE07180 ID=AT1TE07180; Name=AT1TE07180; Alias=VANDAL5A
AT1G07170.1	chr1:002200686	0.0	W/2200686-2201018	AT1G07170.1 CDS AT1G07170 ID=AT1G07170.1; Parent=AT1G07170; Name=AT1G07170.1; Note=PHF5-like protein; curator_summary=Similar to human splicing factor 3b%2C 14 kda subunit%2C SF3b14b.; conf_class=2; computational_description=PHF5-like protein%3B CONTAINS InterPro DOMAIN/s: PHF5-like (InterPro:IPR005345)%3B BEST Arabidopsis thaliana protein match is: PHF5-like protein (TAIR:AT2G30000.1)%3B Has 420 Blast hits to 420 proteins in 206 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 129%3B Fungi - 128%3B Plants - 86%3B Viruses - 0%3B Other Eukaryotes - 77 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15987817, PMID:18775970, locus:2007432; locus_type=protein_coding
AT1G07170.2	chr1:002200686	0.0	W/2200686-2201018	AT1G07170.2 CDS AT1G07170 ID=AT1G07170.2; Parent=AT1G07170; Name=AT1G07170.2; Note=PHF5-like protein; curator_summary=Similar to human splicing factor 3b%2C 14 kda subunit%2C SF3b14b.; conf_class=2; computational_description=PHF5-like protein%3B CONTAINS InterPro DOMAIN/s: PHF5-like (InterPro:IPR005345)%3B BEST Arabidopsis thaliana protein match is: PHF5-like protein (TAIR:AT2G30000.1)%3B Has 420 Blast hits to 420 proteins in 206 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 129%3B Fungi - 128%3B Plants - 86%3B Viruses - 0%3B Other Eukaryotes - 77 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15987817, PMID:18775970, locus:2007432; locus_type=protein_coding
AT1G07170.3	chr1:002200686	0.0	W/2200686-2201018	AT1G07170.3 CDS AT1G07170 ID=AT1G07170.3; Parent=AT1G07170; Name=AT1G07170.3; Note=PHF5-like protein; curator_summary=Similar to human splicing factor 3b%2C 14 kda subunit%2C SF3b14b.; conf_class=5; computational_description=PHF5-like protein%3B CONTAINS InterPro DOMAIN/s: PHF5-like (InterPro:IPR005345)%3B BEST Arabidopsis thaliana protein match is: PHF5-like protein (TAIR:AT2G30000.1)%3B Has 420 Blast hits to 420 proteins in 206 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 129%3B Fungi - 128%3B Plants - 86%3B Viruses - 0%3B Other Eukaryotes - 77 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:15987817, PMID:18775970, locus:2007432; locus_type=protein_coding
AT1G07170.4	chr1:002200686	0.0	W/2200686-2201018	AT1G07170.4 CDS AT1G07170 ID=AT1G07170.4; Parent=AT1G07170; Name=AT1G07170.4; Note=PHF5-like protein; Dbxref=PMID:15987817, PMID:18775970, locus:2007432; curator_summary=Similar to human splicing factor 3b%2C 14 kda subunit%2C SF3b14b.; computational_description=PHF5-like protein%3B CONTAINS InterPro DOMAIN/s: PHF5-like (InterPro:IPR005345)%3B BEST Arabidopsis thaliana protein match is: PHF5-like protein (TAIR:AT2G30000.1)%3B Has 420 Blast hits to 420 proteins in 206 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 129%3B Fungi - 128%3B Plants - 86%3B Viruses - 0%3B Other Eukaryotes - 77 (source: NCBI BLink).; locus_type=protein_coding
AT1G07170.5	chr1:002200686	0.0	W/2200686-2201018	AT1G07170.5 CDS AT1G07170 ID=AT1G07170.5; Parent=AT1G07170; Name=AT1G07170.5; Note=PHF5-like protein; Dbxref=PMID:15987817, PMID:18775970, locus:2007432; curator_summary=Similar to human splicing factor 3b%2C 14 kda subunit%2C SF3b14b.; computational_description=PHF5-like protein%3B CONTAINS InterPro DOMAIN/s: PHF5-like (InterPro:IPR005345)%3B BEST Arabidopsis thaliana protein match is: PHF5-like protein (TAIR:AT2G30000.1)%3B Has 420 Blast hits to 420 proteins in 206 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 129%3B Fungi - 128%3B Plants - 86%3B Viruses - 0%3B Other Eukaryotes - 77 (source: NCBI BLink).; locus_type=protein_coding
AT1G07170.6	chr1:002200686	0.0	W/2200686-2201018	AT1G07170.6 CDS AT1G07170 ID=AT1G07170.6; Parent=AT1G07170; Name=AT1G07170.6; Note=PHF5-like protein; Dbxref=PMID:15987817, PMID:18775970, locus:2007432; curator_summary=Similar to human splicing factor 3b%2C 14 kda subunit%2C SF3b14b.; computational_description=PHF5-like protein%3B CONTAINS InterPro DOMAIN/s: PHF5-like (InterPro:IPR005345)%3B BEST Arabidopsis thaliana protein match is: PHF5-like protein (TAIR:AT2G30000.1)%3B Has 420 Blast hits to 420 proteins in 206 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 129%3B Fungi - 128%3B Plants - 86%3B Viruses - 0%3B Other Eukaryotes - 77 (source: NCBI BLink).; locus_type=protein_coding
AT1G07175.1	chr1:002202382	0.0	W/2202382-2202472,2202650-2202770,2203071-2203122	AT1G07175.1 CDS AT1G07175 ID=AT1G07175.1; Parent=AT1G07175; Name=AT1G07175.1; Note=alternative NAD(P)H dehydrogenase; conf_class=2; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29995.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:4515102505; locus_type=protein_coding
AT1G07175.2	chr1:002202382	0.0	W/2202382-2202472,2202650-2202774	AT1G07175.2 CDS AT1G07175 ID=AT1G07175.2; Parent=AT1G07175; Name=AT1G07175.2; Note=alternative NAD(P)H dehydrogenase; Dbxref=locus:4515102505; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29995.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; locus_type=protein_coding
AT1G07180.1	chr1:002204414	0.0	W/2204414-2204893,2205179-2205392,2205483-2205643,2205734-2205799,2205886-2206049,2206143-2206257,2206339-2206518,2206621-2206773	AT1G07180.1 CDS AT1G07180 ID=AT1G07180.1; Parent=AT1G07180; Name=AT1G07180.1; Note=alternative NAD(P)H dehydrogenase 1; curator_summary=Internal NAD(P)H dehydrogenase in mitochondria. The predicted protein sequence has high homology with other designated NAD(P)H DHs from microorganisms%3B the capacity for matrix NAD(P)H oxidation via the rotenone-insensitive pathway is significantly reduced in the Atndi1 mutant plant line%3B the in vitro translation product of AtNDI1 is imported into isolated mitochondria and located on the inside of the inner membrane.; conf_class=2; symbol=NDA1; Alias=ATNDI1, ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD ( P ) H DEHYDROGENASE; full_name=alternative NAD(P)H dehydrogenase 1; computational_description=alternative NAD(P)H dehydrogenase 1 (NDA1)%3B FUNCTIONS IN: NADH dehydrogenase activity%3B INVOLVED IN: oxidation reduction%3B LOCATED IN: intrinsic to mitochondrial inner membrane%2C mitochondrion%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 10 growth stages%3B CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027)%2C Pyridine nucleotide-disulphide oxidoreductase%2C NAD-binding region (InterPro:IPR001327)%3B BEST Arabidopsis thaliana protein match is: alternative NAD(P)H dehydrogenase 2 (TAIR:AT2G29990.1)%3B Has 9792 Blast hits to 9601 proteins in 2135 species: Archae - 248%3B Bacteria - 7524%3B Metazoa - 53%3B Fungi - 647%3B Plants - 379%3B Viruses - 0%3B Other Eukaryotes - 941 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15342526, PMID:16258072, PMID:16299171, PMID:16941219, PMID:17322330, PMID:18424626, PMID:18650403, PMID:18703057, PMID:19567377, PMID:20736450, PMID:24486764, locus:2007427; locus_type=protein_coding
AT1G07190.1	chr1:002208013	0.0	W/2208013-2208177	AT1G07190.1 CDS AT1G07190 ID=AT1G07190.1; Parent=AT1G07190; Name=AT1G07190.1; Note=Lon protease; conf_class=10; computational_description=BEST Arabidopsis thaliana protein match is: lon protease 1 (TAIR:AT5G26860.1)%3B Has 106 Blast hits to 106 proteins in 47 species: Archae - 0%3B Bacteria - 34%3B Metazoa - 0%3B Fungi - 11%3B Plants - 56%3B Viruses - 0%3B Other Eukaryotes - 5 (source: NCBI BLink).; Dbxref=locus:2007447; locus_type=protein_coding
AT1G07200.1	chr1:002209033	0.0	C/2209033-2210301	AT1G07200.1 CDS AT1G07200 ID=AT1G07200.1; Parent=AT1G07200; Name=AT1G07200.1; Note=Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein; curator_summary=Encodes a member of an eight-gene family (SMAX1 and SMAX1-like) that has weak similarity to AtHSP101%2C a ClpB chaperonin required for thermotolerance.; conf_class=2; Alias=SMXL6, SMAX1-like 6; computational_description=Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein%3B BEST Arabidopsis thaliana protein match is: Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G29970.1)%3B Has 14609 Blast hits to 14609 proteins in 2753 species: Archae - 17%3B Bacteria - 11747%3B Metazoa - 78%3B Fungi - 268%3B Plants - 440%3B Viruses - 0%3B Other Eukaryotes - 2059 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17181860, PMID:23893171, locus:2007412; locus_type=protein_coding
AT1G07200.2	chr1:002209033	0.0	C/2209033-2210523,2210607-2210859,2211121-2212316	AT1G07200.2 CDS AT1G07200 ID=AT1G07200.2; Parent=AT1G07200; Name=AT1G07200.2; Note=Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein; curator_summary=Encodes a member of an eight-gene family (SMAX1 and SMAX1-like) that has weak similarity to AtHSP101%2C a ClpB chaperonin required for thermotolerance.; conf_class=1; Alias=SMXL6, SMAX1-like 6; computational_description=Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein%3B BEST Arabidopsis thaliana protein match is: Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G29970.1)%3B Has 14609 Blast hits to 14609 proteins in 2753 species: Archae - 17%3B Bacteria - 11747%3B Metazoa - 78%3B Fungi - 268%3B Plants - 440%3B Viruses - 0%3B Other Eukaryotes - 2059 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:17181860, PMID:23893171, locus:2007412; locus_type=protein_coding
AT1G07210.1	chr1:002215320	0.0	W/2215320-2215422,2215513-2215856,2216155-2216241,2216327-2216386,2216477-2216668	AT1G07210.1 CDS AT1G07210 ID=AT1G07210.1; Parent=AT1G07210; Name=AT1G07210.1; Note=Ribosomal protein S18; conf_class=2; computational_description=Ribosomal protein S18%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%3B LOCATED IN: ribosome%2C intracellular%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein S18 (InterPro:IPR001648)%3B Has 5527 Blast hits to 5527 proteins in 2078 species: Archae - 0%3B Bacteria - 4261%3B Metazoa - 44%3B Fungi - 19%3B Plants - 203%3B Viruses - 0%3B Other Eukaryotes - 1000 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16368778, PMID:18315867, PMID:18775970, locus:2007397; locus_type=protein_coding
AT1G07220.1	chr1:002217073	0.0	C/2217073-2217420,2217499-2217709,2217795-2217859,2217936-2218125,2218202-2218552,2218669-2218907,2219260-2219379	AT1G07220.1 CDS AT1G07220 ID=AT1G07220.1; Parent=AT1G07220; Name=AT1G07220.1; Note=O-glucosyltransferase rumi-like protein (DUF821); conf_class=1; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Lipopolysaccharide-modifying protein (InterPro:IPR006598)%2C Protein of unknown function DUF821%2C CAP10-like (InterPro:IPR008539)%3B BEST Arabidopsis thaliana protein match is: Arabidopsis thaliana protein of unknown function (DUF821) (TAIR:AT5G23850.1)%3B Has 670 Blast hits to 661 proteins in 130 species: Archae - 0%3B Bacteria - 41%3B Metazoa - 224%3B Fungi - 131%3B Plants - 246%3B Viruses - 2%3B Other Eukaryotes - 26 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:18650403, PMID:21908688, locus:2007362; locus_type=protein_coding
AT1G04567.1	chr1:002218886	0.0	W/2218886-2219281	AT1G04567.1 antisense_lncRNA AT1G04567 ID=AT1G04567.1; Parent=AT1G04567; Name=AT1G04567.1; description=Natural antisense transcript overlaps with AT1G07220; Note=Natural antisense transcript overlaps with AT1G07220; locus_type=antisense_long_noncoding_rna
AT1G07230.1	chr1:002220509	0.0	C/2220509-2220834,2221206-2221382,2221680-2222778	AT1G07230.1 CDS AT1G07230 ID=AT1G07230.1; Parent=AT1G07230; Name=AT1G07230.1; Note=non-specific phospholipase C1; conf_class=1; symbol=NPC1; full_name=non-specific phospholipase C1; computational_description=non-specific phospholipase C1 (NPC1)%3B FUNCTIONS IN: hydrolase activity%2C acting on ester bonds%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Phosphoesterase (InterPro:IPR007312)%3B BEST Arabidopsis thaliana protein match is: non-specific phospholipase C2 (TAIR:AT2G26870.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15618226, PMID:18650403, PMID:18805951, PMID:20507939, PMID:23089468, PMID:23505340, locus:2007357; locus_type=protein_coding
AT1G07240.1	chr1:002223889	0.0	W/2223889-2225331	AT1G07240.1 CDS AT1G07240 ID=AT1G07240.1; Parent=AT1G07240; Name=AT1G07240.1; Note=UDP-glucosyl transferase 71C5; conf_class=1; symbol=UGT71C5; full_name=UDP-glucosyl transferase 71C5; computational_description=UDP-glucosyl transferase 71C5 (UGT71C5)%3B FUNCTIONS IN: quercetin 3-O-glucosyltransferase activity%2C UDP-glycosyltransferase activity%2C transferase activity%2C transferring glycosyl groups%3B INVOLVED IN: metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213)%3B BEST Arabidopsis thaliana protein match is: UDP-glucosyl transferase 71C4 (TAIR:AT1G07250.1)%3B Has 7681 Blast hits to 7623 proteins in 421 species: Archae - 0%3B Bacteria - 405%3B Metazoa - 2298%3B Fungi - 25%3B Plants - 4881%3B Viruses - 12%3B Other Eukaryotes - 60 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15352060, PMID:16489130, PMID:20736450, PMID:25713337, locus:2007342; locus_type=protein_coding
AT1G07250.1	chr1:002225963	0.0	W/2225963-2227402	AT1G07250.1 CDS AT1G07250 ID=AT1G07250.1; Parent=AT1G07250; Name=AT1G07250.1; Note=UDP-glucosyl transferase 71C4; conf_class=1; symbol=UGT71C4; full_name=UDP-glucosyl transferase 71C4; computational_description=UDP-glucosyl transferase 71C4 (UGT71C4)%3B FUNCTIONS IN: quercetin 3-O-glucosyltransferase activity%2C quercetin 7-O-glucosyltransferase activity%2C UDP-glucosyltransferase activity%2C transferase activity%2C transferring glycosyl groups%3B INVOLVED IN: metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213)%3B BEST Arabidopsis thaliana protein match is: UDP-glucosyl transferase 71C3 (TAIR:AT1G07260.1)%3B Has 7587 Blast hits to 7548 proteins in 444 species: Archae - 0%3B Bacteria - 410%3B Metazoa - 2119%3B Fungi - 25%3B Plants - 4933%3B Viruses - 39%3B Other Eukaryotes - 61 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11641410, PMID:15352060, PMID:18650403, PMID:20736450, locus:2007462; locus_type=protein_coding
AT1G07260.1	chr1:002227748	0.0	C/2227748-2229178	AT1G07260.1 CDS AT1G07260 ID=AT1G07260.1; Parent=AT1G07260; Name=AT1G07260.1; Note=UDP-glucosyl transferase 71C3; conf_class=1; symbol=UGT71C3; full_name=UDP-glucosyl transferase 71C3; computational_description=UDP-glucosyl transferase 71C3 (UGT71C3)%3B FUNCTIONS IN: quercetin 3-O-glucosyltransferase activity%2C UDP-glycosyltransferase activity%2C transferase activity%2C transferring glycosyl groups%3B INVOLVED IN: metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 7 plant structures%3B EXPRESSED DURING: F mature embryo stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213)%3B BEST Arabidopsis thaliana protein match is: UDP-glucosyl transferase 71C2 (TAIR:AT2G29740.1)%3B Has 7762 Blast hits to 7715 proteins in 456 species: Archae - 0%3B Bacteria - 482%3B Metazoa - 2213%3B Fungi - 22%3B Plants - 4940%3B Viruses - 44%3B Other Eukaryotes - 61 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15352060, PMID:16258017, PMID:17061125, PMID:17056621, PMID:20736450, PMID:22290409, PMID:23159939, locus:2007452; locus_type=protein_coding
AT1G07270.1	chr1:002229757	0.0	C/2229757-2229789,2229887-2229976,2230109-2230204,2230326-2230388,2230516-2230605,2230708-2230789,2230978-2231027,2231144-2231194,2231320-2231393,2231509-2231568,2231661-2231767,2231846-2231955,2232027-2232101,2232189-2232409,2232490-2232583,2232676-2232897	AT1G07270.1 CDS AT1G07270 ID=AT1G07270.1; Parent=AT1G07270; Name=AT1G07270.1; Note=Cell division control%2C Cdc6; conf_class=1; computational_description=Cell division control%2C Cdc6%3B FUNCTIONS IN: ATP binding%3B INVOLVED IN: regulation of cell cycle%2C DNA replication%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: ATPase%2C AAA-type%2C core (InterPro:IPR003959)%2C CDC6%2C C-terminal (InterPro:IPR015163)%2C Cell division control%2C Cdc6 (InterPro:IPR016314)%3B BEST Arabidopsis thaliana protein match is: cell division control 6 (TAIR:AT2G29680.2)%3B Has 1458 Blast hits to 1448 proteins in 345 species: Archae - 437%3B Bacteria - 0%3B Metazoa - 359%3B Fungi - 295%3B Plants - 123%3B Viruses - 0%3B Other Eukaryotes - 244 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12609051, PMID:14576160, PMID:15358564, PMID:16126853, PMID:17556508, PMID:18822296, PMID:18775970, PMID:20736450, PMID:20706207, locus:2007332; locus_type=protein_coding
AT1G07270.2	chr1:002229967	0.0	C/2229967-2229990,2230109-2230204,2230326-2230388,2230516-2230605,2230708-2230789,2230978-2231027,2231144-2231194,2231320-2231393,2231509-2231568,2231661-2231767,2231846-2231955,2232027-2232101,2232189-2232409,2232490-2232583,2232676-2232897	AT1G07270.2 CDS AT1G07270 ID=AT1G07270.2; Parent=AT1G07270; Name=AT1G07270.2; Note=Cell division control%2C Cdc6; computational_description=Cell division control%2C Cdc6%3B FUNCTIONS IN: ATP binding%3B INVOLVED IN: regulation of cell cycle%2C DNA replication%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: ATPase%2C AAA-type%2C core (InterPro:IPR003959)%2C CDC6%2C C-terminal (InterPro:IPR015163)%2C Cell division control%2C Cdc6 (InterPro:IPR016314)%3B BEST Arabidopsis thaliana protein match is: cell division control 6 (TAIR:AT2G29680.2)%3B Has 1458 Blast hits to 1448 proteins in 345 species: Archae - 437%3B Bacteria - 0%3B Metazoa - 359%3B Fungi - 295%3B Plants - 123%3B Viruses - 0%3B Other Eukaryotes - 244 (source: NCBI BLink).; Dbxref=PMID:12609051, PMID:14576160, PMID:15358564, PMID:16126853, PMID:17556508, PMID:18822296, PMID:18775970, PMID:20736450, PMID:20706207, locus:2007332; locus_type=protein_coding
AT1TE07290	chr1:002234188	0.0	W/2234188-2234361	AT1TE07290 transposable_element AT1TE07290 ID=AT1TE07290; Name=AT1TE07290; Alias=ATHATN7
AT1TE07295	chr1:002234362	0.0	C/2234362-2234388	AT1TE07295 transposable_element AT1TE07295 ID=AT1TE07295; Name=AT1TE07295; Alias=ATREP3
AT1TE07300	chr1:002234389	0.0	C/2234389-2235033,2235034-2235176	AT1TE07300 transposable_element AT1TE07300 ID=AT1TE07300; Name=AT1TE07300; Alias=ATREP3
AT1TE07305	chr1:002235177	0.0	C/2235177-2235231	AT1TE07305 transposable_element AT1TE07305 ID=AT1TE07305; Name=AT1TE07305; Alias=ATREP3
AT1G07280.1	chr1:002238505	0.0	W/2238505-2239910,2240739-2240991	AT1G07280.1 CDS AT1G07280 ID=AT1G07280.1; Parent=AT1G07280; Name=AT1G07280.1; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; conf_class=2; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B FUNCTIONS IN: binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990)%2C Tetratricopeptide repeat-containing (InterPro:IPR013026)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29670.1)%3B Has 604 Blast hits to 369 proteins in 73 species: Archae - 4%3B Bacteria - 161%3B Metazoa - 2%3B Fungi - 2%3B Plants - 383%3B Viruses - 0%3B Other Eukaryotes - 52 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15688252, PMID:20736450, locus:2025067; locus_type=protein_coding
AT1G07280.2	chr1:002238505	0.0	W/2238505-2239910,2240739-2240991	AT1G07280.2 CDS AT1G07280 ID=AT1G07280.2; Parent=AT1G07280; Name=AT1G07280.2; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; conf_class=2; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B FUNCTIONS IN: binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990)%2C Tetratricopeptide repeat-containing (InterPro:IPR013026)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29670.1)%3B Has 604 Blast hits to 369 proteins in 73 species: Archae - 4%3B Bacteria - 161%3B Metazoa - 2%3B Fungi - 2%3B Plants - 383%3B Viruses - 0%3B Other Eukaryotes - 52 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15688252, PMID:20736450, locus:2025067; locus_type=protein_coding
AT1G07280.3	chr1:002238505	0.0	W/2238505-2239910,2240739-2240991	AT1G07280.3 CDS AT1G07280 ID=AT1G07280.3; Parent=AT1G07280; Name=AT1G07280.3; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; conf_class=2; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B FUNCTIONS IN: binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990)%2C Tetratricopeptide repeat-containing (InterPro:IPR013026)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29670.1)%3B Has 604 Blast hits to 369 proteins in 73 species: Archae - 4%3B Bacteria - 161%3B Metazoa - 2%3B Fungi - 2%3B Plants - 383%3B Viruses - 0%3B Other Eukaryotes - 52 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15688252, PMID:20736450, locus:2025067; locus_type=protein_coding
AT1G07280.4	chr1:002238505	0.0	W/2238505-2239910,2240026-2240107	AT1G07280.4 CDS AT1G07280 ID=AT1G07280.4; Parent=AT1G07280; Name=AT1G07280.4; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B FUNCTIONS IN: binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990)%2C Tetratricopeptide repeat-containing (InterPro:IPR013026)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29670.1)%3B Has 604 Blast hits to 369 proteins in 73 species: Archae - 4%3B Bacteria - 161%3B Metazoa - 2%3B Fungi - 2%3B Plants - 383%3B Viruses - 0%3B Other Eukaryotes - 52 (source: NCBI BLink).; Dbxref=PMID:15688252, PMID:20736450, locus:2025067; locus_type=protein_coding
AT1G04573.1	chr1:002241511	0.0	C/2241511-2241744	AT1G04573.1 lnc_RNA AT1G04573 ID=AT1G04573.1; Parent=AT1G04573; Name=AT1G04573.1; locus_type=long_noncoding_rna
AT1G07290.1	chr1:002242284	0.0	C/2242284-2242327,2242461-2242558,2242654-2242770,2243107-2243261,2243345-2243442,2243535-2243602,2243745-2243884,2243968-2244160,2244277-2244428	AT1G07290.1 CDS AT1G07290 ID=AT1G07290.1; Parent=AT1G07290; Name=AT1G07290.1; Note=golgi nucleotide sugar transporter 2; curator_summary=Encodes a GDP-mannose transporter.; conf_class=2; symbol=GONST2; full_name=golgi nucleotide sugar transporter 2; computational_description=golgi nucleotide sugar transporter 2 (GONST2)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853)%3B BEST Arabidopsis thaliana protein match is: golgi nucleotide sugar transporter 1 (TAIR:AT2G13650.3)%3B Has 1672 Blast hits to 1666 proteins in 234 species: Archae - 0%3B Bacteria - 5%3B Metazoa - 480%3B Fungi - 272%3B Plants - 768%3B Viruses - 0%3B Other Eukaryotes - 147 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11595802, PMID:15480787, PMID:15456736, PMID:16607029, locus:2025047; locus_type=protein_coding
AT1G07300.1	chr1:002245914	0.0	C/2245914-2246300	AT1G07300.1 CDS AT1G07300 ID=AT1G07300.1; Parent=AT1G07300; Name=AT1G07300.1; Note=josephin protein-like protein; conf_class=1; computational_description=josephin protein-related%3B BEST Arabidopsis thaliana protein match is: JOSEPHIN-like protein (TAIR:AT2G29640.1)%3B Has 49 Blast hits to 49 proteins in 11 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 49%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:18952863, locus:2025017; locus_type=protein_coding
AT1G07300.2	chr1:002245914	0.0	C/2245914-2246293,2246816-2246840	AT1G07300.2 CDS AT1G07300 ID=AT1G07300.2; Parent=AT1G07300; Name=AT1G07300.2; Note=josephin protein-like protein; computational_description=josephin protein-related%3B BEST Arabidopsis thaliana protein match is: JOSEPHIN-like protein (TAIR:AT2G29640.1)%3B Has 49 Blast hits to 49 proteins in 11 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 49%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=PMID:18952863, locus:2025017; locus_type=protein_coding
AT1G07300.3	chr1:002245914	0.0	C/2245914-2246293,2246816-2247005	AT1G07300.3 CDS AT1G07300 ID=AT1G07300.3; Parent=AT1G07300; Name=AT1G07300.3; Note=josephin protein-like protein; computational_description=josephin protein-related%3B BEST Arabidopsis thaliana protein match is: JOSEPHIN-like protein (TAIR:AT2G29640.1)%3B Has 49 Blast hits to 49 proteins in 11 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 49%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=PMID:18952863, locus:2025017; locus_type=protein_coding
AT1G07310.1	chr1:002247775	0.0	C/2247775-2248833	AT1G07310.1 CDS AT1G07310 ID=AT1G07310.1; Parent=AT1G07310; Name=AT1G07310.1; Note=Calcium-dependent lipid-binding (CaLB domain) family protein; conf_class=1; computational_description=Calcium-dependent lipid-binding (CaLB domain) family protein%3B CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029)%2C C2 calcium/lipid-binding domain%2C CaLB (InterPro:IPR008973)%2C C2 calcium-dependent membrane targeting (InterPro:IPR000008)%3B BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT5G23950.1)%3B Has 16203 Blast hits to 11144 proteins in 837 species: Archae - 8%3B Bacteria - 1073%3B Metazoa - 6146%3B Fungi - 3149%3B Plants - 3752%3B Viruses - 463%3B Other Eukaryotes - 1612 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14576160, PMID:15610358, PMID:18775970, PMID:20736450, locus:2025002; locus_type=protein_coding
AT1G07320.1	chr1:002249190	0.0	W/2249190-2250021,2250173-2250189	AT1G07320.1 CDS AT1G07320 ID=AT1G07320.1; Parent=AT1G07320; Name=AT1G07320.1; Note=ribosomal protein L4; curator_summary=encodes a plastid ribosomal protein L4; conf_class=4; symbol=RPL4; Alias=EMB2784, EMBRYO DEFECTIVE 2784, PRPL4, plastid ribosomal protein L4; full_name=ribosomal protein L4; computational_description=ribosomal protein L4 (RPL4)%3B FUNCTIONS IN: structural constituent of ribosome%2C poly(U) RNA binding%3B INVOLVED IN: translation%3B LOCATED IN: in 10 components%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L4/L1e%2C bacterial-type (InterPro:IPR013005)%2C Ribosomal protein L4 (InterPro:IPR015498)%2C Ribosomal protein L4/L1e (InterPro:IPR002136)%3B BEST Arabidopsis thaliana protein match is: Ribosomal protein L4/L1 family (TAIR:AT2G20060.1)%3B Has 8127 Blast hits to 8127 proteins in 2686 species: Archae - 3%3B Bacteria - 5615%3B Metazoa - 117%3B Fungi - 103%3B Plants - 95%3B Viruses - 0%3B Other Eukaryotes - 2194 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:9461586, PMID:11826309, PMID:12969430, PMID:14576160, PMID:15322131, PMID:15821981, PMID:16228244, PMID:16368778, PMID:17511964, PMID:18650403, PMID:20383066, PMID:22900828, locus:2025107; locus_type=protein_coding
AT1G07320.2	chr1:002249190	0.0	W/2249190-2250021,2250179-2250189	AT1G07320.2 CDS AT1G07320 ID=AT1G07320.2; Parent=AT1G07320; Name=AT1G07320.2; Note=ribosomal protein L4; curator_summary=encodes a plastid ribosomal protein L4; conf_class=2; symbol=RPL4; Alias=EMB2784, EMBRYO DEFECTIVE 2784, PRPL4, plastid ribosomal protein L4; full_name=ribosomal protein L4; computational_description=ribosomal protein L4 (RPL4)%3B FUNCTIONS IN: structural constituent of ribosome%2C poly(U) RNA binding%3B INVOLVED IN: translation%3B LOCATED IN: in 10 components%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L4/L1e%2C bacterial-type (InterPro:IPR013005)%2C Ribosomal protein L4 (InterPro:IPR015498)%2C Ribosomal protein L4/L1e (InterPro:IPR002136)%3B BEST Arabidopsis thaliana protein match is: Ribosomal protein L4/L1 family (TAIR:AT2G20060.1)%3B Has 8127 Blast hits to 8127 proteins in 2686 species: Archae - 3%3B Bacteria - 5615%3B Metazoa - 117%3B Fungi - 103%3B Plants - 95%3B Viruses - 0%3B Other Eukaryotes - 2194 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9461586, PMID:11826309, PMID:12969430, PMID:14576160, PMID:15322131, PMID:15821981, PMID:16228244, PMID:16368778, PMID:17511964, PMID:18650403, PMID:20383066, PMID:22900828, locus:2025107; locus_type=protein_coding
AT1G07320.3	chr1:002249190	0.0	W/2249190-2250026	AT1G07320.3 CDS AT1G07320 ID=AT1G07320.3; Parent=AT1G07320; Name=AT1G07320.3; Note=ribosomal protein L4; curator_summary=encodes a plastid ribosomal protein L4; conf_class=1; symbol=RPL4; Alias=EMB2784, EMBRYO DEFECTIVE 2784, PRPL4, plastid ribosomal protein L4; full_name=ribosomal protein L4; computational_description=ribosomal protein L4 (RPL4)%3B FUNCTIONS IN: structural constituent of ribosome%2C poly(U) RNA binding%3B INVOLVED IN: translation%3B LOCATED IN: in 10 components%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L4/L1e%2C bacterial-type (InterPro:IPR013005)%2C Ribosomal protein L4 (InterPro:IPR015498)%2C Ribosomal protein L4/L1e (InterPro:IPR002136)%3B BEST Arabidopsis thaliana protein match is: Ribosomal protein L4/L1 family (TAIR:AT2G20060.1)%3B Has 8127 Blast hits to 8127 proteins in 2686 species: Archae - 3%3B Bacteria - 5615%3B Metazoa - 117%3B Fungi - 103%3B Plants - 95%3B Viruses - 0%3B Other Eukaryotes - 2194 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:9461586, PMID:11826309, PMID:12969430, PMID:14576160, PMID:15322131, PMID:15821981, PMID:16228244, PMID:16368778, PMID:17511964, PMID:18650403, PMID:20383066, PMID:22900828, locus:2025107; locus_type=protein_coding
AT1G07320.4	chr1:002249190	0.0	W/2249190-2250025,2250173-2250173	AT1G07320.4 CDS AT1G07320 ID=AT1G07320.4; Parent=AT1G07320; Name=AT1G07320.4; Note=ribosomal protein L4; curator_summary=encodes a plastid ribosomal protein L4; conf_class=2; symbol=RPL4; Alias=EMB2784, EMBRYO DEFECTIVE 2784, PRPL4, plastid ribosomal protein L4; full_name=ribosomal protein L4; computational_description=ribosomal protein L4 (RPL4)%3B FUNCTIONS IN: structural constituent of ribosome%2C poly(U) RNA binding%3B INVOLVED IN: translation%3B LOCATED IN: in 10 components%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L4/L1e%2C bacterial-type (InterPro:IPR013005)%2C Ribosomal protein L4 (InterPro:IPR015498)%2C Ribosomal protein L4/L1e (InterPro:IPR002136)%3B BEST Arabidopsis thaliana protein match is: Ribosomal protein L4/L1 family (TAIR:AT2G20060.1)%3B Has 8127 Blast hits to 8127 proteins in 2686 species: Archae - 3%3B Bacteria - 5615%3B Metazoa - 117%3B Fungi - 103%3B Plants - 95%3B Viruses - 0%3B Other Eukaryotes - 2194 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9461586, PMID:11826309, PMID:12969430, PMID:14576160, PMID:15322131, PMID:15821981, PMID:16228244, PMID:16368778, PMID:17511964, PMID:18650403, PMID:20383066, PMID:22900828, locus:2025107; locus_type=protein_coding
AT1G07330.1	chr1:002251131	0.0	W/2251131-2251208,2251413-2252268,2252355-2253115,2253223-2253585	AT1G07330.1 CDS AT1G07330 ID=AT1G07330.1; Parent=AT1G07330; Name=AT1G07330.1; Note=dentin sialophosphoprotein; conf_class=6; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29620.1)%3B Has 597 Blast hits to 536 proteins in 121 species: Archae - 2%3B Bacteria - 47%3B Metazoa - 170%3B Fungi - 43%3B Plants - 98%3B Viruses - 0%3B Other Eukaryotes - 237 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:18775970, locus:2025112; locus_type=protein_coding
AT1G07330.2	chr1:002251131	0.0	W/2251131-2252268,2252355-2253115,2253223-2253585	AT1G07330.2 CDS AT1G07330 ID=AT1G07330.2; Parent=AT1G07330; Name=AT1G07330.2; Note=dentin sialophosphoprotein; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29620.1)%3B Has 597 Blast hits to 536 proteins in 121 species: Archae - 2%3B Bacteria - 47%3B Metazoa - 170%3B Fungi - 43%3B Plants - 98%3B Viruses - 0%3B Other Eukaryotes - 237 (source: NCBI BLink).; Dbxref=PMID:18775970, locus:2025112; locus_type=protein_coding
AT1TE07360	chr1:002253787	0.0	C/2253787-2254643	AT1TE07360 transposable_element AT1TE07360 ID=AT1TE07360; Name=AT1TE07360; Alias=ATREP15
AT1TE07365	chr1:002254644	0.0	C/2254644-2254722	AT1TE07365 transposable_element AT1TE07365 ID=AT1TE07365; Name=AT1TE07365; Alias=ATREP4
AT1G07340.1	chr1:002254873	0.0	W/2254873-2255005,2255088-2255407,2255570-2256196,2256296-2256712	AT1G07340.1 CDS AT1G07340 ID=AT1G07340.1; Parent=AT1G07340; Name=AT1G07340.1; Note=sugar transporter 2; conf_class=1; symbol=STP2; Alias=ATSTP2, sugar transporter 2; full_name=sugar transporter 2; computational_description=sugar transporter 2 (STP2)%3B CONTAINS InterPro DOMAIN/s: Sugar transporter%2C conserved site (InterPro:IPR005829)%2C Major facilitator superfamily (InterPro:IPR020846)%2C General substrate transporter (InterPro:IPR005828)%2C Sugar/inositol transporter (InterPro:IPR003663)%2C Major facilitator superfamily%2C general substrate transporter (InterPro:IPR016196)%3B BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G26250.1)%3B Has 22673 Blast hits to 22229 proteins in 1760 species: Archae - 425%3B Bacteria - 7839%3B Metazoa - 4193%3B Fungi - 6598%3B Plants - 2480%3B Viruses - 0%3B Other Eukaryotes - 1138 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:10074716, PMID:12970485, PMID:15565288, PMID:16291648, PMID:16607029, PMID:16831835, PMID:20118226, PMID:20736450, PMID:21992610, locus:2025102; locus_type=protein_coding
AT1G07350.1	chr1:002257732	0.0	C/2257732-2257906,2257988-2258447,2258539-2258602,2259003-2259152,2259277-2259385,2259486-2259586,2260012-2260101	AT1G07350.1 CDS AT1G07350 ID=AT1G07350.1; Parent=AT1G07350; Name=AT1G07350.1; Note=RNA-binding (RRM/RBD/RNP motifs) family protein; curator_summary=Encodes a serine/arginine rich-like protein%2C SR45a. Involved in the regulation of stress-responsive alternative splicing.; conf_class=2; symbol=SR45a; full_name=serine/arginine rich-like protein 45a; computational_description=RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: RNA splicing%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G35785.1)%3B Has 998067 Blast hits to 992400 proteins in 35925 species: Archae - 21556%3B Bacteria - 596698%3B Metazoa - 207042%3B Fungi - 24534%3B Plants - 55970%3B Viruses - 68919%3B Other Eukaryotes - 23348 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:15047901, PMID:16632598, PMID:16807317, PMID:17556373, PMID:18218973, PMID:18252252, PMID:18402682, PMID:18650403, PMID:18775970, PMID:20736450, PMID:21862516, PMID:22291167, PMID:23132568, PMID:25268622, locus:2025092; locus_type=protein_coding
AT1G07350.4	chr1:002258751	0.0	C/2258751-2259152,2259277-2259385,2259486-2259586,2260012-2260101	AT1G07350.4 CDS AT1G07350 ID=AT1G07350.4; Parent=AT1G07350; Name=AT1G07350.4; Note=RNA-binding (RRM/RBD/RNP motifs) family protein; symbol=SR45a; full_name=serine/arginine rich-like protein 45a; curator_summary=Encodes a serine/arginine rich-like protein%2C SR45a. Involved in the regulation of stress-responsive alternative splicing.; computational_description=RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: RNA splicing%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G35785.1)%3B Has 998067 Blast hits to 992400 proteins in 35925 species: Archae - 21556%3B Bacteria - 596698%3B Metazoa - 207042%3B Fungi - 24534%3B Plants - 55970%3B Viruses - 68919%3B Other Eukaryotes - 23348 (source: NCBI BLink).; Dbxref=PMID:14576160, PMID:15047901, PMID:16632598, PMID:16807317, PMID:17556373, PMID:18218973, PMID:18252252, PMID:18402682, PMID:18650403, PMID:18775970, PMID:20736450, PMID:21862516, PMID:22291167, PMID:23132568, PMID:25268622, locus:2025092; locus_type=protein_coding
AT1G07350.6	chr1:002258751	0.0	C/2258751-2259152,2259277-2259385,2259486-2259586	AT1G07350.6 CDS AT1G07350 ID=AT1G07350.6; Parent=AT1G07350; Name=AT1G07350.6; Note=RNA-binding (RRM/RBD/RNP motifs) family protein; symbol=SR45a; full_name=serine/arginine rich-like protein 45a; curator_summary=Encodes a serine/arginine rich-like protein%2C SR45a. Involved in the regulation of stress-responsive alternative splicing.; computational_description=RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: RNA splicing%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G35785.1)%3B Has 998067 Blast hits to 992400 proteins in 35925 species: Archae - 21556%3B Bacteria - 596698%3B Metazoa - 207042%3B Fungi - 24534%3B Plants - 55970%3B Viruses - 68919%3B Other Eukaryotes - 23348 (source: NCBI BLink).; Dbxref=PMID:14576160, PMID:15047901, PMID:16632598, PMID:16807317, PMID:17556373, PMID:18218973, PMID:18252252, PMID:18402682, PMID:18650403, PMID:18775970, PMID:20736450, PMID:21862516, PMID:22291167, PMID:23132568, PMID:25268622, locus:2025092; locus_type=protein_coding
AT1G07350.2	chr1:002258816	0.0	C/2258816-2258845,2259003-2259152,2259277-2259385,2259486-2259586	AT1G07350.2 CDS AT1G07350 ID=AT1G07350.2; Parent=AT1G07350; Name=AT1G07350.2; Note=RNA-binding (RRM/RBD/RNP motifs) family protein; curator_summary=Encodes a serine/arginine rich-like protein%2C SR45a. Involved in the regulation of stress-responsive alternative splicing.; conf_class=1; symbol=SR45a; full_name=serine/arginine rich-like protein 45a; computational_description=RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: RNA splicing%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G35785.1)%3B Has 998067 Blast hits to 992400 proteins in 35925 species: Archae - 21556%3B Bacteria - 596698%3B Metazoa - 207042%3B Fungi - 24534%3B Plants - 55970%3B Viruses - 68919%3B Other Eukaryotes - 23348 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14576160, PMID:15047901, PMID:16632598, PMID:16807317, PMID:17556373, PMID:18218973, PMID:18252252, PMID:18402682, PMID:18650403, PMID:18775970, PMID:20736450, PMID:21862516, PMID:22291167, PMID:23132568, PMID:25268622, locus:2025092; locus_type=protein_coding
AT1G07350.3	chr1:002258816	0.0	C/2258816-2258845,2259003-2259152,2259277-2259385,2259486-2259586	AT1G07350.3 CDS AT1G07350 ID=AT1G07350.3; Parent=AT1G07350; Name=AT1G07350.3; Note=RNA-binding (RRM/RBD/RNP motifs) family protein; symbol=SR45a; full_name=serine/arginine rich-like protein 45a; Dbxref=PMID:14576160, PMID:15047901, PMID:16632598, PMID:16807317, PMID:17556373, PMID:18218973, PMID:18252252, PMID:18402682, PMID:18650403, PMID:18775970, PMID:20736450, PMID:21862516, PMID:22291167, PMID:23132568, PMID:25268622, locus:2025092; curator_summary=Encodes a serine/arginine rich-like protein%2C SR45a. Involved in the regulation of stress-responsive alternative splicing.; computational_description=RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: RNA splicing%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G35785.1)%3B Has 998067 Blast hits to 992400 proteins in 35925 species: Archae - 21556%3B Bacteria - 596698%3B Metazoa - 207042%3B Fungi - 24534%3B Plants - 55970%3B Viruses - 68919%3B Other Eukaryotes - 23348 (source: NCBI BLink).; locus_type=protein_coding
AT1G07350.5	chr1:002258816	0.0	C/2258816-2258845,2259003-2259152,2259277-2259385,2259486-2259586,2260012-2260101	AT1G07350.5 CDS AT1G07350 ID=AT1G07350.5; Parent=AT1G07350; Name=AT1G07350.5; Note=RNA-binding (RRM/RBD/RNP motifs) family protein; symbol=SR45a; full_name=serine/arginine rich-like protein 45a; Dbxref=PMID:14576160, PMID:15047901, PMID:16632598, PMID:16807317, PMID:17556373, PMID:18218973, PMID:18252252, PMID:18402682, PMID:18650403, PMID:18775970, PMID:20736450, PMID:21862516, PMID:22291167, PMID:23132568, PMID:25268622, locus:2025092; curator_summary=Encodes a serine/arginine rich-like protein%2C SR45a. Involved in the regulation of stress-responsive alternative splicing.; computational_description=RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: RNA splicing%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G35785.1)%3B Has 998067 Blast hits to 992400 proteins in 35925 species: Archae - 21556%3B Bacteria - 596698%3B Metazoa - 207042%3B Fungi - 24534%3B Plants - 55970%3B Viruses - 68919%3B Other Eukaryotes - 23348 (source: NCBI BLink).; locus_type=protein_coding
AT1G07360.1	chr1:002260562	0.0	C/2260562-2261408,2261740-2261963,2262085-2262354,2262691-2262795	AT1G07360.1 CDS AT1G07360 ID=AT1G07360.1; Parent=AT1G07360; Name=AT1G07360.1; Note=CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein; curator_summary=Encodes MAC5A%2C a component of the MOS4-associated complex (MAC) that contributes to snc1- mediated autoimmunity. MAC is a highly conserved nuclear protein complex associated with the spliceosome. Homologues include AT1G07360 (MAC5A)%2C AT2G29580 (MAC5B) and AT5G07060 (MAC5C).; conf_class=2; symbol=MAC5A; full_name=MOS4-associated complex subunit 5A; computational_description=CCCH-type zinc fingerfamily protein with RNA-binding domain%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C zinc ion binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C CCCH-type (InterPro:IPR000571)%2C RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: CCCH-type zinc fingerfamily protein with RNA-binding domain (TAIR:AT2G29580.1)%3B Has 18250 Blast hits to 13471 proteins in 794 species: Archae - 12%3B Bacteria - 1319%3B Metazoa - 6997%3B Fungi - 3518%3B Plants - 3570%3B Viruses - 267%3B Other Eukaryotes - 2567 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18221561, PMID:18775970, PMID:20943852, locus:2025077; locus_type=protein_coding
AT1G07370.1	chr1:002263204	0.0	W/2263204-2263522,2263715-2263867,2263951-2264048,2264161-2264382	AT1G07370.1 CDS AT1G07370 ID=AT1G07370.1; Parent=AT1G07370; Name=AT1G07370.1; Note=proliferating cellular nuclear antigen 1; curator_summary=Encodes putative proliferating cell nuclear antigen involved in cell cycle regulation. May be sumoylated.; conf_class=2; symbol=PCNA1; Alias=ATPCNA1, PROLIFERATING CELLULAR NUCLEAR ANTIGEN 1; full_name=proliferating cellular nuclear antigen 1; computational_description=proliferating cellular nuclear antigen 1 (PCNA1)%3B CONTAINS InterPro DOMAIN/s: Proliferating cell nuclear antigen%2C PCNA (InterPro:IPR000730)%2C Proliferating cell nuclear antigen%2C PCNA%2C C-terminal (InterPro:IPR022649)%2C Proliferating cell nuclear antigen%2C PCNA%2C conserved site (InterPro:IPR022659)%2C Proliferating cell nuclear antigen%2C PCNA%2C N-terminal (InterPro:IPR022648)%3B BEST Arabidopsis thaliana protein match is: proliferating cell nuclear antigen 2 (TAIR:AT2G29570.1)%3B Has 1857 Blast hits to 1845 proteins in 456 species: Archae - 391%3B Bacteria - 0%3B Metazoa - 315%3B Fungi - 169%3B Plants - 159%3B Viruses - 71%3B Other Eukaryotes - 752 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9338963, PMID:12060226, PMID:12468739, PMID:12631321, PMID:12919743, PMID:15610358, PMID:16771839, PMID:18494853, PMID:18650403, PMID:18722640, PMID:19250749, PMID:19388052, PMID:19704534, PMID:20007687, PMID:20118269, PMID:20706207, PMID:21325140, PMID:22330895, PMID:23314815, PMID:23656863, PMID:24652625, PMID:25561503, locus:2025062; locus_type=protein_coding
AT1G07380.1	chr1:002264829	0.0	C/2264829-2265088,2265474-2265768,2265858-2266027,2266113-2266176,2266258-2266383,2266473-2266743,2266855-2267119,2267209-2267553,2267655-2267863,2267972-2268306	AT1G07380.1 CDS AT1G07380 ID=AT1G07380.1; Parent=AT1G07380; Name=AT1G07380.1; Note=Neutral/alkaline non-lysosomal ceramidase; conf_class=2; computational_description=Neutral/alkaline non-lysosomal ceramidase%3B FUNCTIONS IN: ceramidase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Neutral/alkaline nonlysosomal ceramidase (InterPro:IPR006823)%3B BEST Arabidopsis thaliana protein match is: Neutral/alkaline non-lysosomal ceramidase (TAIR:AT5G58980.1)%3B Has 713 Blast hits to 570 proteins in 199 species: Archae - 0%3B Bacteria - 295%3B Metazoa - 184%3B Fungi - 101%3B Plants - 78%3B Viruses - 0%3B Other Eukaryotes - 55 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18650403, locus:2025042; locus_type=protein_coding
AT1G07380.2	chr1:002264829	0.0	C/2264829-2265088,2265474-2265768,2265858-2266027,2266113-2266176,2266258-2266383,2266473-2266743,2266855-2267119,2267209-2267553,2267655-2267863,2267972-2268309	AT1G07380.2 CDS AT1G07380 ID=AT1G07380.2; Parent=AT1G07380; Name=AT1G07380.2; Note=Neutral/alkaline non-lysosomal ceramidase; computational_description=Neutral/alkaline non-lysosomal ceramidase%3B FUNCTIONS IN: ceramidase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Neutral/alkaline nonlysosomal ceramidase (InterPro:IPR006823)%3B BEST Arabidopsis thaliana protein match is: Neutral/alkaline non-lysosomal ceramidase (TAIR:AT5G58980.1)%3B Has 713 Blast hits to 570 proteins in 199 species: Archae - 0%3B Bacteria - 295%3B Metazoa - 184%3B Fungi - 101%3B Plants - 78%3B Viruses - 0%3B Other Eukaryotes - 55 (source: NCBI BLink).; Dbxref=PMID:18650403, locus:2025042; locus_type=protein_coding
AT1G07390.4	chr1:002269764	0.0	W/2269764-2270199,2270577-2270732,2270832-2270903,2271010-2271084,2271178-2271249,2271342-2271416,2271521-2271595,2272123-2272191,2272451-2274654	AT1G07390.4 CDS AT1G07390 ID=AT1G07390.4; Parent=AT1G07390; Name=AT1G07390.4; Note=receptor like protein 1; symbol=RLP1; Alias=AtRLP1, receptor like protein 1; full_name=receptor like protein 1; computational_description=receptor like protein 1 (RLP1)%3B CONTAINS InterPro DOMAIN/s: Leucine-rich repeat%2C typical subtype (InterPro:IPR003591)%2C Leucine-rich repeat-containing N-terminal domain%2C type 2 (InterPro:IPR013210)%2C Leucine-rich repeat (InterPro:IPR001611)%3B BEST Arabidopsis thaliana protein match is: receptor like protein 9 (TAIR:AT1G58190.2)%3B Has 135653 Blast hits to 34187 proteins in 1325 species: Archae - 66%3B Bacteria - 11060%3B Metazoa - 39671%3B Fungi - 1897%3B Plants - 72882%3B Viruses - 44%3B Other Eukaryotes - 10033 (source: NCBI BLink).; Dbxref=PMID:11751054, PMID:18434605, PMID:21477822, PMID:23898033, PMID:24384530, locus:2025012; locus_type=protein_coding
AT1G07390.5	chr1:002269764	0.0	W/2269764-2270199,2270577-2270732,2270832-2270903,2271010-2271084,2271178-2271249,2271342-2271416,2271521-2271595,2272123-2272191,2272451-2272534,2272622-2274654	AT1G07390.5 CDS AT1G07390 ID=AT1G07390.5; Parent=AT1G07390; Name=AT1G07390.5; Note=receptor like protein 1; symbol=RLP1; Alias=AtRLP1, receptor like protein 1; full_name=receptor like protein 1; computational_description=receptor like protein 1 (RLP1)%3B CONTAINS InterPro DOMAIN/s: Leucine-rich repeat%2C typical subtype (InterPro:IPR003591)%2C Leucine-rich repeat-containing N-terminal domain%2C type 2 (InterPro:IPR013210)%2C Leucine-rich repeat (InterPro:IPR001611)%3B BEST Arabidopsis thaliana protein match is: receptor like protein 9 (TAIR:AT1G58190.2)%3B Has 135653 Blast hits to 34187 proteins in 1325 species: Archae - 66%3B Bacteria - 11060%3B Metazoa - 39671%3B Fungi - 1897%3B Plants - 72882%3B Viruses - 44%3B Other Eukaryotes - 10033 (source: NCBI BLink).; Dbxref=PMID:11751054, PMID:18434605, PMID:21477822, PMID:23898033, PMID:24384530, locus:2025012; locus_type=protein_coding
AT1G07390.1	chr1:002269893	0.0	W/2269893-2270199,2270577-2270732,2270832-2270903,2271010-2271084,2271178-2271249,2271342-2271416,2271521-2271595,2272123-2272191,2272451-2274654	AT1G07390.1 CDS AT1G07390 ID=AT1G07390.1; Parent=AT1G07390; Name=AT1G07390.1; Note=receptor like protein 1; conf_class=3; symbol=RLP1; Alias=AtRLP1, receptor like protein 1; full_name=receptor like protein 1; computational_description=receptor like protein 1 (RLP1)%3B CONTAINS InterPro DOMAIN/s: Leucine-rich repeat%2C typical subtype (InterPro:IPR003591)%2C Leucine-rich repeat-containing N-terminal domain%2C type 2 (InterPro:IPR013210)%2C Leucine-rich repeat (InterPro:IPR001611)%3B BEST Arabidopsis thaliana protein match is: receptor like protein 9 (TAIR:AT1G58190.2)%3B Has 135653 Blast hits to 34187 proteins in 1325 species: Archae - 66%3B Bacteria - 11060%3B Metazoa - 39671%3B Fungi - 1897%3B Plants - 72882%3B Viruses - 44%3B Other Eukaryotes - 10033 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11751054, PMID:18434605, PMID:21477822, PMID:23898033, PMID:24384530, locus:2025012; locus_type=protein_coding
AT1G07390.3	chr1:002269893	0.0	W/2269893-2270199,2270577-2270732,2270832-2270903,2271010-2271084,2271178-2271249,2271342-2271416,2271521-2271595,2271675-2271736,2271808-2271879,2272022-2272034,2272123-2272191,2272451-2274654	AT1G07390.3 CDS AT1G07390 ID=AT1G07390.3; Parent=AT1G07390; Name=AT1G07390.3; Note=receptor like protein 1; conf_class=6; symbol=RLP1; Alias=AtRLP1, receptor like protein 1; full_name=receptor like protein 1; computational_description=receptor like protein 1 (RLP1)%3B CONTAINS InterPro DOMAIN/s: Leucine-rich repeat%2C typical subtype (InterPro:IPR003591)%2C Leucine-rich repeat-containing N-terminal domain%2C type 2 (InterPro:IPR013210)%2C Leucine-rich repeat (InterPro:IPR001611)%3B BEST Arabidopsis thaliana protein match is: receptor like protein 9 (TAIR:AT1G58190.2)%3B Has 135653 Blast hits to 34187 proteins in 1325 species: Archae - 66%3B Bacteria - 11060%3B Metazoa - 39671%3B Fungi - 1897%3B Plants - 72882%3B Viruses - 44%3B Other Eukaryotes - 10033 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:11751054, PMID:18434605, PMID:21477822, PMID:23898033, PMID:24384530, locus:2025012; locus_type=protein_coding
AT1G07390.2	chr1:002270633	0.0	W/2270633-2270732,2270832-2270903,2271010-2271084,2271178-2271249,2271342-2271416,2271521-2271595,2272123-2272191,2272451-2274654	AT1G07390.2 CDS AT1G07390 ID=AT1G07390.2; Parent=AT1G07390; Name=AT1G07390.2; Note=receptor like protein 1; conf_class=1; symbol=RLP1; Alias=AtRLP1, receptor like protein 1; full_name=receptor like protein 1; computational_description=receptor like protein 1 (RLP1)%3B CONTAINS InterPro DOMAIN/s: Leucine-rich repeat%2C typical subtype (InterPro:IPR003591)%2C Leucine-rich repeat-containing N-terminal domain%2C type 2 (InterPro:IPR013210)%2C Leucine-rich repeat (InterPro:IPR001611)%3B BEST Arabidopsis thaliana protein match is: receptor like protein 9 (TAIR:AT1G58190.2)%3B Has 135653 Blast hits to 34187 proteins in 1325 species: Archae - 66%3B Bacteria - 11060%3B Metazoa - 39671%3B Fungi - 1897%3B Plants - 72882%3B Viruses - 44%3B Other Eukaryotes - 10033 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11751054, PMID:18434605, PMID:21477822, PMID:23898033, PMID:24384530, locus:2025012; locus_type=protein_coding
AT1G07400.1	chr1:002275148	0.0	W/2275148-2275621	AT1G07400.1 CDS AT1G07400 ID=AT1G07400.1; Parent=AT1G07400; Name=AT1G07400.1; Note=HSP20-like chaperones superfamily protein; conf_class=1; computational_description=HSP20-like chaperones superfamily protein%3B CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068)%2C HSP20-like chaperone (InterPro:IPR008978)%3B BEST Arabidopsis thaliana protein match is: HSP20-like chaperones superfamily protein (TAIR:AT1G59860.1)%3B Has 7238 Blast hits to 7237 proteins in 1623 species: Archae - 225%3B Bacteria - 4290%3B Metazoa - 129%3B Fungi - 318%3B Plants - 1626%3B Viruses - 0%3B Other Eukaryotes - 650 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14964527, PMID:15634198, PMID:16531488, PMID:17233795, PMID:17905899, PMID:18252252, PMID:18805951, PMID:21443605, locus:2024997; locus_type=protein_coding
AT1G07410.1	chr1:002276270	0.0	W/2276270-2276434,2276675-2277154	AT1G07410.1 CDS AT1G07410 ID=AT1G07410.1; Parent=AT1G07410; Name=AT1G07410.1; Note=RAB GTPase homolog A2B; conf_class=1; symbol=RABA2b; Alias=ATRAB-A2B, ARABIDOPSIS RAB GTPASE HOMOLOG A2B, ATRABA2B, RAB GTPase homolog A2B, RAB-A2B, RAB GTPASE HOMOLOG A2B; full_name=RAB GTPase homolog A2B; computational_description=RAB GTPase homolog A2B (RABA2b)%3B FUNCTIONS IN: GTP binding%2C GTPase activity%3B INVOLVED IN: intracellular protein transport%2C signal transduction%2C nucleocytoplasmic transport%2C protein transport%2C small GTPase mediated signal transduction%3B LOCATED IN: endosome%2C plasma membrane%2C cell plate%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Ran GTPase (InterPro:IPR002041)%2C ADP-ribosylation factor (InterPro:IPR006688)%2C Ras (InterPro:IPR013753)%2C Ras small GTPase%2C Ras type (InterPro:IPR003577)%2C Rab11-related (InterPro:IPR015595)%2C Small GTPase%2C Rho type (InterPro:IPR003578)%2C Ras GTPase (InterPro:IPR001806)%2C Small GTP-binding protein (InterPro:IPR005225)%2C Small GTPase (InterPro:IPR020851)%2C Ras small GTPase%2C Rab type (InterPro:IPR003579)%3B BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A2D (TAIR:AT5G59150.1)%3B Has 28965 Blast hits to 28914 proteins in 772 species: Archae - 29%3B Bacteria - 152%3B Metazoa - 15139%3B Fungi - 4328%3B Plants - 3313%3B Viruses - 20%3B Other Eukaryotes - 5984 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12644670, PMID:15377757, PMID:18239134, PMID:18775970, locus:2024992; locus_type=protein_coding
AT1G07420.1	chr1:002277910	0.0	W/2277910-2277939,2278587-2278724,2278972-2279117,2279258-2279377,2279466-2279678,2279777-2279857,2279961-2280033	AT1G07420.1 CDS AT1G07420 ID=AT1G07420.1; Parent=AT1G07420; Name=AT1G07420.1; Note=sterol 4-alpha-methyl-oxidase 2-1; curator_summary=Arabidopsis thaliana sterol 4-alpha-methyl-oxidase mRNA; conf_class=2; symbol=SMO2-1; Alias=ATSMO1, Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1; full_name=sterol 4-alpha-methyl-oxidase 2-1; computational_description=sterol 4-alpha-methyl-oxidase 2-1 (SMO2-1)%3B FUNCTIONS IN: C-4 methylsterol oxidase activity%2C 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase activity%3B INVOLVED IN: oxidation reduction%2C fatty acid biosynthetic process%3B LOCATED IN: chloroplast envelope%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694)%3B BEST Arabidopsis thaliana protein match is: sterol 4-alpha-methyl-oxidase 2-2 (TAIR:AT2G29390.2)%3B Has 2893 Blast hits to 2888 proteins in 513 species: Archae - 0%3B Bacteria - 699%3B Metazoa - 429%3B Fungi - 685%3B Plants - 484%3B Viruses - 3%3B Other Eukaryotes - 593 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11707264, PMID:12777052, PMID:14653780, PMID:18650403, locus:2024982; locus_type=protein_coding
AT1G07420.2	chr1:002278918	0.0	W/2278918-2279117,2279258-2279377,2279466-2279678,2279777-2279857,2279961-2280033	AT1G07420.2 CDS AT1G07420 ID=AT1G07420.2; Parent=AT1G07420; Name=AT1G07420.2; Note=sterol 4-alpha-methyl-oxidase 2-1; curator_summary=Arabidopsis thaliana sterol 4-alpha-methyl-oxidase mRNA; conf_class=2; symbol=SMO2-1; Alias=ATSMO1, Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1; full_name=sterol 4-alpha-methyl-oxidase 2-1; computational_description=sterol 4-alpha-methyl-oxidase 2-1 (SMO2-1)%3B FUNCTIONS IN: C-4 methylsterol oxidase activity%2C 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase activity%3B INVOLVED IN: oxidation reduction%2C fatty acid biosynthetic process%3B LOCATED IN: chloroplast envelope%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694)%3B BEST Arabidopsis thaliana protein match is: sterol 4-alpha-methyl-oxidase 2-2 (TAIR:AT2G29390.2)%3B Has 2893 Blast hits to 2888 proteins in 513 species: Archae - 0%3B Bacteria - 699%3B Metazoa - 429%3B Fungi - 685%3B Plants - 484%3B Viruses - 3%3B Other Eukaryotes - 593 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11707264, PMID:12777052, PMID:14653780, PMID:18650403, locus:2024982; locus_type=protein_coding
AT1G07430.1	chr1:002281151	0.0	C/2281151-2281663,2281748-2282059,2282153-2282656	AT1G07430.1 CDS AT1G07430 ID=AT1G07430.1; Parent=AT1G07430; Name=AT1G07430.1; Note=highly ABA-induced PP2C protein 2; curator_summary=Encodes a member of the group A protein phosphatase 2C (PP2C) family that is responsible for negatively regulating seed dormancy.; conf_class=1; symbol=HAI2; Alias=AIP1, AKT1 interacting protein phosphatase 1, AtAIP1, HON, HONSU (Korean for abnormal drowsiness); full_name=highly ABA-induced PP2C gene 2; computational_description=highly ABA-induced PP2C gene 2 (HAI2)%3B FUNCTIONS IN: protein serine/threonine phosphatase activity%2C catalytic activity%3B INVOLVED IN: protein amino acid dephosphorylation%3B LOCATED IN: protein serine/threonine phosphatase complex%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (InterPro:IPR000222)%2C Protein phosphatase 2C-related (InterPro:IPR001932)%2C Protein phosphatase 2C (InterPro:IPR015655)%2C Protein phosphatase 2C%2C N-terminal (InterPro:IPR014045)%3B BEST Arabidopsis thaliana protein match is: highly ABA-induced PP2C gene 3 (TAIR:AT2G29380.1)%3B Has 6753 Blast hits to 6737 proteins in 407 species: Archae - 6%3B Bacteria - 193%3B Metazoa - 1700%3B Fungi - 794%3B Plants - 2782%3B Viruses - 7%3B Other Eukaryotes - 1271 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12432076, PMID:12970481, PMID:14982972, PMID:15086800, PMID:15047901, PMID:15130549, PMID:16339800, PMID:17003050, PMID:17158582, PMID:17316173, PMID:17304219, PMID:17376162, PMID:17461784, PMID:17888165, PMID:18162593, PMID:18441212, PMID:19021904, PMID:19880399, PMID:22404835, PMID:22829320, PMID:23378449, locus:2025087; locus_type=protein_coding
AT1TE07460	chr1:002285666	0.0	W/2285666-2286032	AT1TE07460 transposable_element AT1TE07460 ID=AT1TE07460; Name=AT1TE07460; Alias=ATDNA2T9C
AT1G07440.1	chr1:002286436	0.0	C/2286436-2286624,2286712-2286818,2287011-2287227,2287300-2287507,2287586-2287665	AT1G07440.1 CDS AT1G07440 ID=AT1G07440.1; Parent=AT1G07440; Name=AT1G07440.1; Note=NAD(P)-binding Rossmann-fold superfamily protein; conf_class=2; computational_description=NAD(P)-binding Rossmann-fold superfamily protein%3B FUNCTIONS IN: oxidoreductase activity%2C binding%2C catalytic activity%3B INVOLVED IN: response to cadmium ion%2C response to karrikin%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase%2C conserved site (InterPro:IPR020904)%2C NAD(P)-binding domain (InterPro:IPR016040)%2C Glucose/ribitol dehydrogenase (InterPro:IPR002347)%2C Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198)%3B BEST Arabidopsis thaliana protein match is: NAD-dependent epimerase/dehydratase family protein (TAIR:AT2G29340.1)%3B Has 123507 Blast hits to 123216 proteins in 3599 species: Archae - 988%3B Bacteria - 81523%3B Metazoa - 5145%3B Fungi - 6175%3B Plants - 2670%3B Viruses - 5%3B Other Eukaryotes - 27001 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18650403, PMID:20005002, PMID:20351290, PMID:21333657, locus:2025072; locus_type=protein_coding
AT1G07440.2	chr1:002286991	0.0	C/2286991-2287227,2287300-2287507,2287586-2287665	AT1G07440.2 CDS AT1G07440 ID=AT1G07440.2; Parent=AT1G07440; Name=AT1G07440.2; Note=NAD(P)-binding Rossmann-fold superfamily protein; conf_class=2; computational_description=NAD(P)-binding Rossmann-fold superfamily protein%3B FUNCTIONS IN: oxidoreductase activity%2C binding%2C catalytic activity%3B INVOLVED IN: response to cadmium ion%2C response to karrikin%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase%2C conserved site (InterPro:IPR020904)%2C NAD(P)-binding domain (InterPro:IPR016040)%2C Glucose/ribitol dehydrogenase (InterPro:IPR002347)%2C Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198)%3B BEST Arabidopsis thaliana protein match is: NAD-dependent epimerase/dehydratase family protein (TAIR:AT2G29340.1)%3B Has 123507 Blast hits to 123216 proteins in 3599 species: Archae - 988%3B Bacteria - 81523%3B Metazoa - 5145%3B Fungi - 6175%3B Plants - 2670%3B Viruses - 5%3B Other Eukaryotes - 27001 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18650403, PMID:20005002, PMID:20351290, PMID:21333657, locus:2025072; locus_type=protein_coding
AT1G07450.1	chr1:002288038	0.0	C/2288038-2288223,2288309-2288415,2288500-2288713,2288849-2289056,2289189-2289256	AT1G07450.1 CDS AT1G07450 ID=AT1G07450.1; Parent=AT1G07450; Name=AT1G07450.1; Note=NAD(P)-binding Rossmann-fold superfamily protein; conf_class=2; computational_description=NAD(P)-binding Rossmann-fold superfamily protein%3B FUNCTIONS IN: oxidoreductase activity%2C binding%2C catalytic activity%3B INVOLVED IN: oxidation reduction%2C metabolic process%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 10 growth stages%3B CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase%2C conserved site (InterPro:IPR020904)%2C NAD(P)-binding domain (InterPro:IPR016040)%2C Glucose/ribitol dehydrogenase (InterPro:IPR002347)%2C Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198)%3B BEST Arabidopsis thaliana protein match is: tropinone reductase (TAIR:AT2G29330.1)%3B Has 110061 Blast hits to 109928 proteins in 3503 species: Archae - 928%3B Bacteria - 73032%3B Metazoa - 4466%3B Fungi - 5399%3B Plants - 2523%3B Viruses - 2%3B Other Eukaryotes - 23711 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15082927, locus:2025057; locus_type=protein_coding
AT1G07460.2	chr1:002290009	0.0	W/2290009-2290977	AT1G07460.2 CDS AT1G07460 ID=AT1G07460.2; Parent=AT1G07460; Name=AT1G07460.2; Note=Concanavalin A-like lectin family protein; computational_description=Concanavalin A-like lectin family protein%3B FUNCTIONS IN: carbohydrate binding%2C binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: anchored to membrane%3B CONTAINS InterPro DOMAIN/s: Legume lectin%2C beta chain (InterPro:IPR001220)%2C Concanavalin A-like lectin/glucanase%2C subgroup (InterPro:IPR013320)%2C Concanavalin A-like lectin/glucanase (InterPro:IPR008985)%2C Legume lectin%2C beta chain%2C Mn/Ca-binding site (InterPro:IPR019825)%3B BEST Arabidopsis thaliana protein match is: Concanavalin A-like lectin protein kinase family protein (TAIR:AT2G29220.1)%3B Has 2091 Blast hits to 2069 proteins in 128 species: Archae - 0%3B Bacteria - 22%3B Metazoa - 0%3B Fungi - 0%3B Plants - 2059%3B Viruses - 0%3B Other Eukaryotes - 10 (source: NCBI BLink).; Dbxref=PMID:12068095, PMID:12805588, PMID:14576160, locus:2025037; locus_type=protein_coding
AT1G07460.1	chr1:002290201	0.0	W/2290201-2290977	AT1G07460.1 CDS AT1G07460 ID=AT1G07460.1; Parent=AT1G07460; Name=AT1G07460.1; Note=Concanavalin A-like lectin family protein; conf_class=1; computational_description=Concanavalin A-like lectin family protein%3B FUNCTIONS IN: carbohydrate binding%2C binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: anchored to membrane%3B CONTAINS InterPro DOMAIN/s: Legume lectin%2C beta chain (InterPro:IPR001220)%2C Concanavalin A-like lectin/glucanase%2C subgroup (InterPro:IPR013320)%2C Concanavalin A-like lectin/glucanase (InterPro:IPR008985)%2C Legume lectin%2C beta chain%2C Mn/Ca-binding site (InterPro:IPR019825)%3B BEST Arabidopsis thaliana protein match is: Concanavalin A-like lectin protein kinase family protein (TAIR:AT2G29220.1)%3B Has 2091 Blast hits to 2069 proteins in 128 species: Archae - 0%3B Bacteria - 22%3B Metazoa - 0%3B Fungi - 0%3B Plants - 2059%3B Viruses - 0%3B Other Eukaryotes - 10 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12068095, PMID:12805588, PMID:14576160, locus:2025037; locus_type=protein_coding
AT1G07470.1	chr1:002291723	0.0	W/2291723-2291848,2292027-2292191,2292305-2292457,2292540-2292585,2292659-2292717,2292896-2293006,2293336-2293479,2293777-2293837,2293926-2294080,2294171-2294254,2294327-2294350	AT1G07470.1 CDS AT1G07470 ID=AT1G07470.1; Parent=AT1G07470; Name=AT1G07470.1; Note=Transcription factor IIA%2C alpha/beta subunit; conf_class=2; computational_description=Transcription factor IIA%2C alpha/beta subunit%3B FUNCTIONS IN: RNA polymerase II transcription factor activity%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: transcription initiation from RNA polymerase II promoter%2C transcription%3B LOCATED IN: transcription factor TFIIA complex%3B EXPRESSED IN: male gametophyte%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%3B CONTAINS InterPro DOMAIN/s: Transcription factor IIA%2C alpha/beta subunit (InterPro:IPR004855)%2C Transcription factor IIA%2C beta-barrel (InterPro:IPR009088)%2C Transcription factor IIA%2C alpha subunit%2C N-terminal (InterPro:IPR013028)%2C Transcription factor IIA%2C helical (InterPro:IPR009083)%3B BEST Arabidopsis thaliana protein match is: Transcription factor IIA%2C alpha/beta subunit (TAIR:AT1G07480.2)%3B Has 705 Blast hits to 589 proteins in 189 species: Archae - 0%3B Bacteria - 16%3B Metazoa - 386%3B Fungi - 167%3B Plants - 79%3B Viruses - 7%3B Other Eukaryotes - 50 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, locus:2025027; locus_type=protein_coding
AT1G07470.2	chr1:002291723	0.0	W/2291723-2291848,2292027-2292191,2292305-2292457,2292540-2292585,2292659-2292717,2292896-2293006,2293336-2293479,2293777-2293837,2293926-2294080,2294171-2294254,2294327-2294350	AT1G07470.2 CDS AT1G07470 ID=AT1G07470.2; Parent=AT1G07470; Name=AT1G07470.2; Note=Transcription factor IIA%2C alpha/beta subunit; Dbxref=PMID:18775970, locus:2025027; computational_description=Transcription factor IIA%2C alpha/beta subunit%3B FUNCTIONS IN: RNA polymerase II transcription factor activity%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: transcription initiation from RNA polymerase II promoter%2C transcription%3B LOCATED IN: transcription factor TFIIA complex%3B EXPRESSED IN: male gametophyte%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%3B CONTAINS InterPro DOMAIN/s: Transcription factor IIA%2C alpha/beta subunit (InterPro:IPR004855)%2C Transcription factor IIA%2C beta-barrel (InterPro:IPR009088)%2C Transcription factor IIA%2C alpha subunit%2C N-terminal (InterPro:IPR013028)%2C Transcription factor IIA%2C helical (InterPro:IPR009083)%3B BEST Arabidopsis thaliana protein match is: Transcription factor IIA%2C alpha/beta subunit (TAIR:AT1G07480.2)%3B Has 705 Blast hits to 589 proteins in 189 species: Archae - 0%3B Bacteria - 16%3B Metazoa - 386%3B Fungi - 167%3B Plants - 79%3B Viruses - 7%3B Other Eukaryotes - 50 (source: NCBI BLink).; locus_type=protein_coding
AT1G04577.1	chr1:002293014	0.0	C/2293014-2293251	AT1G04577.1 antisense_lncRNA AT1G04577 ID=AT1G04577.1; Parent=AT1G04577; Name=AT1G04577.1; description=Natural antisense transcript overlaps with AT1G07470; Note=Natural antisense transcript overlaps with AT1G07470; locus_type=antisense_long_noncoding_rna
AT1G07473.1	chr1:002294728	0.0	C/2294728-2295105	AT1G07473.1 CDS AT1G07473 ID=AT1G07473.1; Parent=AT1G07473; Name=AT1G07473.1; Note=hypothetical protein; conf_class=1; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G07476.1)%3B Has 22 Blast hits to 22 proteins in 6 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 22%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:504956271; locus_type=protein_coding
AT1G04583.1	chr1:002294889	0.0	W/2294889-2295488	AT1G04583.1 antisense_lncRNA AT1G04583 ID=AT1G04583.1; Parent=AT1G04583; Name=AT1G04583.1; description=Natural antisense transcript overlaps with AT1G07473; Note=Natural antisense transcript overlaps with AT1G07473; locus_type=antisense_long_noncoding_rna
AT1G07476.1	chr1:002295805	0.0	W/2295805-2296353	AT1G07476.1 CDS AT1G07476 ID=AT1G07476.1; Parent=AT1G07476; Name=AT1G07476.1; Note=transmembrane protein; conf_class=1; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G07473.1)%3B Has 23 Blast hits to 23 proteins in 6 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 23%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:504956272; locus_type=protein_coding
AT1G07480.1	chr1:002296706	0.0	C/2296706-2296729,2296810-2296893,2296983-2297137,2297225-2297285,2297530-2297673,2297826-2297936,2298128-2298186,2298280-2298325,2298481-2298633,2298747-2298911,2299090-2299215	AT1G07480.1 CDS AT1G07480 ID=AT1G07480.1; Parent=AT1G07480; Name=AT1G07480.1; Note=Transcription factor IIA%2C alpha/beta subunit; conf_class=2; computational_description=Transcription factor IIA%2C alpha/beta subunit%3B FUNCTIONS IN: RNA polymerase II transcription factor activity%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: transcription initiation from RNA polymerase II promoter%2C transcription%3B LOCATED IN: transcription factor TFIIA complex%3B CONTAINS InterPro DOMAIN/s: Transcription factor IIA%2C alpha/beta subunit (InterPro:IPR004855)%2C Transcription factor IIA%2C beta-barrel (InterPro:IPR009088)%2C Transcription factor IIA%2C alpha subunit%2C N-terminal (InterPro:IPR013028)%2C Transcription factor IIA%2C helical (InterPro:IPR009083)%3B BEST Arabidopsis thaliana protein match is: Transcription factor IIA%2C alpha/beta subunit (TAIR:AT1G07470.1)%3B Has 733 Blast hits to 623 proteins in 191 species: Archae - 0%3B Bacteria - 29%3B Metazoa - 394%3B Fungi - 169%3B Plants - 77%3B Viruses - 10%3B Other Eukaryotes - 54 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12169696, locus:2024977; locus_type=protein_coding
AT1G07480.2	chr1:002296706	0.0	C/2296706-2296729,2296810-2296893,2296983-2297137,2297225-2297285,2297530-2297673,2297826-2297936,2298128-2298186,2298280-2298325,2298481-2298633,2298747-2298911,2299090-2299215	AT1G07480.2 CDS AT1G07480 ID=AT1G07480.2; Parent=AT1G07480; Name=AT1G07480.2; Note=Transcription factor IIA%2C alpha/beta subunit; conf_class=3; computational_description=Transcription factor IIA%2C alpha/beta subunit%3B FUNCTIONS IN: RNA polymerase II transcription factor activity%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: transcription initiation from RNA polymerase II promoter%2C transcription%3B LOCATED IN: transcription factor TFIIA complex%3B CONTAINS InterPro DOMAIN/s: Transcription factor IIA%2C alpha/beta subunit (InterPro:IPR004855)%2C Transcription factor IIA%2C beta-barrel (InterPro:IPR009088)%2C Transcription factor IIA%2C alpha subunit%2C N-terminal (InterPro:IPR013028)%2C Transcription factor IIA%2C helical (InterPro:IPR009083)%3B BEST Arabidopsis thaliana protein match is: Transcription factor IIA%2C alpha/beta subunit (TAIR:AT1G07470.1)%3B Has 733 Blast hits to 623 proteins in 191 species: Archae - 0%3B Bacteria - 29%3B Metazoa - 394%3B Fungi - 169%3B Plants - 77%3B Viruses - 10%3B Other Eukaryotes - 54 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12169696, locus:2024977; locus_type=protein_coding
AT1G07480.3	chr1:002296768	0.0	C/2296768-2296893,2296983-2297137,2297225-2297285,2297530-2297673,2297826-2297936,2298128-2298186,2298280-2298325,2298481-2298633,2298747-2298911,2299090-2299215	AT1G07480.3 CDS AT1G07480 ID=AT1G07480.3; Parent=AT1G07480; Name=AT1G07480.3; Note=Transcription factor IIA%2C alpha/beta subunit; computational_description=Transcription factor IIA%2C alpha/beta subunit%3B FUNCTIONS IN: RNA polymerase II transcription factor activity%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: transcription initiation from RNA polymerase II promoter%2C transcription%3B LOCATED IN: transcription factor TFIIA complex%3B CONTAINS InterPro DOMAIN/s: Transcription factor IIA%2C alpha/beta subunit (InterPro:IPR004855)%2C Transcription factor IIA%2C beta-barrel (InterPro:IPR009088)%2C Transcription factor IIA%2C alpha subunit%2C N-terminal (InterPro:IPR013028)%2C Transcription factor IIA%2C helical (InterPro:IPR009083)%3B BEST Arabidopsis thaliana protein match is: Transcription factor IIA%2C alpha/beta subunit (TAIR:AT1G07470.1)%3B Has 733 Blast hits to 623 proteins in 191 species: Archae - 0%3B Bacteria - 29%3B Metazoa - 394%3B Fungi - 169%3B Plants - 77%3B Viruses - 10%3B Other Eukaryotes - 54 (source: NCBI BLink).; Dbxref=PMID:12169696, locus:2024977; locus_type=protein_coding
AT1G04587.1	chr1:002297262	0.0	W/2297262-2297552	AT1G04587.1 antisense_lncRNA AT1G04587 ID=AT1G04587.1; Parent=AT1G04587; Name=AT1G04587.1; description=Natural antisense transcript overlaps with AT1G07480; Note=Natural antisense transcript overlaps with AT1G07480; locus_type=antisense_long_noncoding_rna
AT1G07485.1	chr1:002301505	0.0	W/2301505-2301579,2301665-2301892	AT1G07485.1 CDS AT1G07485 ID=AT1G07485.1; Parent=AT1G07485; Name=AT1G07485.1; Note=hypothetical protein; conf_class=1; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: shoot apex%2C embryo%2C leaf whorl%2C pedicel%3B EXPRESSED DURING: 4 anthesis%2C D bilateral stage%3B Has 5 Blast hits to 5 proteins in 3 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 5%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:4010713418; locus_type=protein_coding
AT1G07490.1	chr1:002301526	0.0	C/2301526-2301849	AT1G07490.1 CDS AT1G07490 ID=AT1G07490.1; Parent=AT1G07490; Name=AT1G07490.1; Note=ROTUNDIFOLIA like 3; conf_class=1; symbol=RTFL3; Alias=DVL9, DEVIL 9; full_name=ROTUNDIFOLIA like 3; computational_description=ROTUNDIFOLIA like 3 (RTFL3)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: shoot development%3B LOCATED IN: chloroplast%3B CONTAINS InterPro DOMAIN/s: DVL (InterPro:IPR012552)%3B BEST Arabidopsis thaliana protein match is: ROTUNDIFOLIA like 5 (TAIR:AT5G59510.1)%3B Has 4671 Blast hits to 722 proteins in 119 species: Archae - 0%3B Bacteria - 250%3B Metazoa - 1223%3B Fungi - 536%3B Plants - 223%3B Viruses - 0%3B Other Eukaryotes - 2439 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14871303, PMID:15125775, locus:2024967; locus_type=protein_coding
AT1G07500.1	chr1:002304783	0.0	C/2304783-2305031	AT1G07500.1 CDS AT1G07500 ID=AT1G07500.1; Parent=AT1G07500; Name=AT1G07500.1; Note=hypothetical protein; conf_class=8; Alias=SMR5, SIAMESE-RELATED 5; computational_description=unknown protein%3B Has 4 Blast hits to 4 proteins in 3 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 4%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*; Dbxref=PMID:26546445, PMID:16024587, PMID:17085506, PMID:17227549, PMID:17599908, PMID:18650403, PMID:20706207, PMID:24399300, PMID:25037213, PMID:25385697, PMID:25624148, locus:2024957; locus_type=protein_coding
AT1G07510.1	chr1:002305689	0.0	W/2305689-2305739,2305826-2306057,2306153-2306221,2306458-2306591,2306698-2307180,2307281-2308048,2308284-2308511,2308904-2309380	AT1G07510.1 CDS AT1G07510 ID=AT1G07510.1; Parent=AT1G07510; Name=AT1G07510.1; Note=FTSH protease 10; curator_summary=encodes an FtsH protease that is localized to the mitochondrion; conf_class=2; symbol=ftsh10; full_name=FTSH protease 10; computational_description=FTSH protease 10 (ftsh10)%3B FUNCTIONS IN: in 6 functions%3B INVOLVED IN: proteolysis%2C protein catabolic process%3B LOCATED IN: mitochondrion%2C chloroplast thylakoid membrane%2C plastid%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase M41%2C FtsH (InterPro:IPR005936)%2C ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C ATPase%2C AAA-type%2C core (InterPro:IPR003959)%2C ATPase%2C AAA-type%2C conserved site (InterPro:IPR003960)%2C Peptidase M41 (InterPro:IPR000642)%2C Peptidase M41%2C FtsH extracellular (InterPro:IPR011546)%3B BEST Arabidopsis thaliana protein match is: FTSH protease 3 (TAIR:AT2G29080.1)%3B Has 37747 Blast hits to 35440 proteins in 3262 species: Archae - 1533%3B Bacteria - 14237%3B Metazoa - 4767%3B Fungi - 3643%3B Plants - 3223%3B Viruses - 27%3B Other Eukaryotes - 10317 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12185496, PMID:14630971, PMID:14671022, PMID:14730085, PMID:14996218, PMID:15322131, PMID:16618929, PMID:16829591, PMID:17181860, PMID:18650403, PMID:18805951, PMID:18775970, PMID:21438879, PMID:22121866, locus:2025052; locus_type=protein_coding
AT1G07520.1	chr1:002309718	0.0	C/2309718-2311805	AT1G07520.1 CDS AT1G07520 ID=AT1G07520.1; Parent=AT1G07520; Name=AT1G07520.1; Note=GRAS family transcription factor; conf_class=1; computational_description=GRAS family transcription factor%3B CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202)%3B BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT2G29065.1)%3B Has 2426 Blast hits to 2385 proteins in 289 species: Archae - 0%3B Bacteria - 8%3B Metazoa - 3%3B Fungi - 0%3B Plants - 2411%3B Viruses - 0%3B Other Eukaryotes - 4 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14760535, PMID:17722694, PMID:15604690, PMID:18590820, locus:2025032; locus_type=protein_coding
AT1G07520.2	chr1:002309718	0.0	C/2309718-2311313	AT1G07520.2 CDS AT1G07520 ID=AT1G07520.2; Parent=AT1G07520; Name=AT1G07520.2; Note=GRAS family transcription factor; computational_description=GRAS family transcription factor%3B CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202)%3B BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT2G29065.1)%3B Has 2426 Blast hits to 2385 proteins in 289 species: Archae - 0%3B Bacteria - 8%3B Metazoa - 3%3B Fungi - 0%3B Plants - 2411%3B Viruses - 0%3B Other Eukaryotes - 4 (source: NCBI BLink).; Dbxref=PMID:14760535, PMID:17722694, PMID:15604690, PMID:18590820, locus:2025032; locus_type=protein_coding
AT1G07520.3	chr1:002309718	0.0	C/2309718-2311808	AT1G07520.3 CDS AT1G07520 ID=AT1G07520.3; Parent=AT1G07520; Name=AT1G07520.3; Note=GRAS family transcription factor; computational_description=GRAS family transcription factor%3B CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202)%3B BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT2G29065.1)%3B Has 2426 Blast hits to 2385 proteins in 289 species: Archae - 0%3B Bacteria - 8%3B Metazoa - 3%3B Fungi - 0%3B Plants - 2411%3B Viruses - 0%3B Other Eukaryotes - 4 (source: NCBI BLink).; Dbxref=PMID:14760535, PMID:17722694, PMID:15604690, PMID:18590820, locus:2025032; locus_type=protein_coding
AT1G07520.4	chr1:002309718	0.0	C/2309718-2311313	AT1G07520.4 CDS AT1G07520 ID=AT1G07520.4; Parent=AT1G07520; Name=AT1G07520.4; Note=GRAS family transcription factor; computational_description=GRAS family transcription factor%3B CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202)%3B BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT2G29065.1)%3B Has 2426 Blast hits to 2385 proteins in 289 species: Archae - 0%3B Bacteria - 8%3B Metazoa - 3%3B Fungi - 0%3B Plants - 2411%3B Viruses - 0%3B Other Eukaryotes - 4 (source: NCBI BLink).; Dbxref=PMID:14760535, PMID:17722694, PMID:15604690, PMID:18590820, locus:2025032; locus_type=protein_coding
AT1G07530.1	chr1:002313828	0.0	C/2313828-2316137	AT1G07530.1 CDS AT1G07530 ID=AT1G07530.1; Parent=AT1G07530; Name=AT1G07530.1; Note=SCARECROW-like 14; curator_summary=Encodes a member of the GRAS family of transcription factors. The protein interacts with the TGA2 transcription factor and affects the transcription of stress-responsive genes. The protein is found in the nucleus and is also exported to the cytoplasm.; conf_class=2; symbol=SCL14; Alias=ATGRAS2, ARABIDOPSIS THALIANA GRAS (GAI, RGA, SCR) 2, GRAS2, GRAS (GAI, RGA, SCR) 2; full_name=SCARECROW-like 14; computational_description=SCARECROW-like 14 (SCL14)%3B CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202)%3B BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT2G29060.1)%3B Has 2535 Blast hits to 2449 proteins in 301 species: Archae - 0%3B Bacteria - 12%3B Metazoa - 27%3B Fungi - 4%3B Plants - 2483%3B Viruses - 0%3B Other Eukaryotes - 9 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:14760535, PMID:15316287, PMID:16489130, PMID:16626458, PMID:17360592, PMID:15604690, PMID:18650403, PMID:18984675, PMID:20711606, locus:2025022; locus_type=protein_coding
AT1G07540.1	chr1:002318433	0.0	C/2318433-2318612,2318692-2318755,2318854-2319120,2319220-2319461,2319550-2319629,2319715-2319789,2319874-2320038,2320129-2320867,2320968-2321048	AT1G07540.1 CDS AT1G07540 ID=AT1G07540.1; Parent=AT1G07540; Name=AT1G07540.1; Note=TRF-like 2; curator_summary=Arabidopsis thaliana telomere-binding protein%2C putative (At1g07540); conf_class=1; symbol=TRFL2; full_name=TRF-like 2; computational_description=TRF-like 2 (TRFL2)%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: regulation of transcription%3B EXPRESSED IN: petal%2C leaf whorl%2C flower%3B EXPRESSED DURING: 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%2C Homeodomain-related (InterPro:IPR012287)%3B BEST Arabidopsis thaliana protein match is: TRF-like 1 (TAIR:AT3G46590.2)%3B Has 350 Blast hits to 338 proteins in 50 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 10%3B Fungi - 4%3B Plants - 309%3B Viruses - 0%3B Other Eukaryotes - 27 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15364931, PMID:15688221, PMID:16463103, PMID:20736450, locus:2025007; locus_type=protein_coding
AT1G04593.1	chr1:002321382	0.0	W/2321382-2321961	AT1G04593.1 lnc_RNA AT1G04593 ID=AT1G04593.1; Parent=AT1G04593; Name=AT1G04593.1; locus_type=long_noncoding_rna
AT1G07550.1	chr1:002322709	0.0	C/2322709-2323114,2323229-2323415,2323523-2323588,2323671-2323797,2323904-2324100,2324185-2324330,2324417-2324494,2324588-2324659,2324727-2324798,2324888-2325032,2325108-2325586,2325768-2326305,2326431-2326512	AT1G07550.1 CDS AT1G07550 ID=AT1G07550.1; Parent=AT1G07550; Name=AT1G07550.1; Note=Leucine-rich repeat protein kinase family protein; conf_class=1; computational_description=Leucine-rich repeat protein kinase family protein%3B FUNCTIONS IN: kinase activity%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: root%2C leaf%3B EXPRESSED DURING: LP.08 eight leaves visible%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Leucine-rich repeat (InterPro:IPR001611)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT2G14510.1)%3B Has 160053 Blast hits to 116886 proteins in 4275 species: Archae - 103%3B Bacteria - 12717%3B Metazoa - 42496%3B Fungi - 9017%3B Plants - 77350%3B Viruses - 370%3B Other Eukaryotes - 18000 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16146321, PMID:16361528, locus:2024987; locus_type=protein_coding
AT1G07560.1	chr1:002327320	0.0	W/2327320-2327404,2327546-2328083,2328172-2328653,2328731-2328875,2328981-2329052,2329190-2329261,2329343-2329420,2329534-2329694,2329784-2329992,2330076-2330202,2330290-2330346,2330429-2330618,2330697-2331096	AT1G07560.1 CDS AT1G07560 ID=AT1G07560.1; Parent=AT1G07560; Name=AT1G07560.1; Note=Leucine-rich repeat protein kinase family protein; conf_class=3; computational_description=Leucine-rich repeat protein kinase family protein%3B FUNCTIONS IN: kinase activity%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: root%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT1G51820.1)%3B Has 156630 Blast hits to 118524 proteins in 4343 species: Archae - 91%3B Bacteria - 13045%3B Metazoa - 42701%3B Fungi - 9322%3B Plants - 73192%3B Viruses - 348%3B Other Eukaryotes - 17931 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:20736450, locus:2024972; locus_type=protein_coding
AT1G07570.1	chr1:002331369	0.0	C/2331369-2331838,2331923-2332046,2332152-2332294,2332397-2332532,2332614-2332930,2333168-2333210	AT1G07570.1 CDS AT1G07570 ID=AT1G07570.1; Parent=AT1G07570; Name=AT1G07570.1; Note=Protein kinase superfamily protein; curator_summary=Protein kinase capable of phosphorylating tyrosine%2C serine%2C and threonine residues; conf_class=1; symbol=APK1A; computational_description=APK1A%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C kinase activity%3B INVOLVED IN: protein amino acid phosphorylation%2C N-terminal protein myristoylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: protein kinase 1B (TAIR:AT2G28930.2)%3B Has 112484 Blast hits to 111280 proteins in 3934 species: Archae - 89%3B Bacteria - 12638%3B Metazoa - 42028%3B Fungi - 9086%3B Plants - 32321%3B Viruses - 355%3B Other Eukaryotes - 15967 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:9150601, PMID:1450380, PMID:11526204, PMID:12912986, PMID:14576160, PMID:16339855, PMID:19304933, PMID:20042022, PMID:21477822, locus:2024962; locus_type=protein_coding
AT1G07570.2	chr1:002331369	0.0	C/2331369-2331838,2331923-2332046,2332152-2332294,2332397-2332532,2332614-2332930,2333168-2333210	AT1G07570.2 CDS AT1G07570 ID=AT1G07570.2; Parent=AT1G07570; Name=AT1G07570.2; Note=Protein kinase superfamily protein; curator_summary=Protein kinase capable of phosphorylating tyrosine%2C serine%2C and threonine residues; conf_class=2; symbol=APK1A; computational_description=APK1A%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C kinase activity%3B INVOLVED IN: protein amino acid phosphorylation%2C N-terminal protein myristoylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: protein kinase 1B (TAIR:AT2G28930.2)%3B Has 112484 Blast hits to 111280 proteins in 3934 species: Archae - 89%3B Bacteria - 12638%3B Metazoa - 42028%3B Fungi - 9086%3B Plants - 32321%3B Viruses - 355%3B Other Eukaryotes - 15967 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9150601, PMID:1450380, PMID:11526204, PMID:12912986, PMID:14576160, PMID:16339855, PMID:19304933, PMID:20042022, PMID:21477822, locus:2024962; locus_type=protein_coding
AT1G07570.3	chr1:002331369	0.0	C/2331369-2331838,2331923-2332046,2332152-2332294,2332397-2332532,2332614-2332930,2333074-2333149	AT1G07570.3 CDS AT1G07570 ID=AT1G07570.3; Parent=AT1G07570; Name=AT1G07570.3; Note=Protein kinase superfamily protein; curator_summary=Protein kinase capable of phosphorylating tyrosine%2C serine%2C and threonine residues; conf_class=4; symbol=APK1A; computational_description=APK1A%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C kinase activity%3B INVOLVED IN: protein amino acid phosphorylation%2C N-terminal protein myristoylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: protein kinase 1B (TAIR:AT2G28930.2)%3B Has 112484 Blast hits to 111280 proteins in 3934 species: Archae - 89%3B Bacteria - 12638%3B Metazoa - 42028%3B Fungi - 9086%3B Plants - 32321%3B Viruses - 355%3B Other Eukaryotes - 15967 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:9150601, PMID:1450380, PMID:11526204, PMID:12912986, PMID:14576160, PMID:16339855, PMID:19304933, PMID:20042022, PMID:21477822, locus:2024962; locus_type=protein_coding
AT1G07570.4	chr1:002331369	0.0	C/2331369-2331838,2331923-2332046,2332152-2332294,2332397-2332544	AT1G07570.4 CDS AT1G07570 ID=AT1G07570.4; Parent=AT1G07570; Name=AT1G07570.4; Note=Protein kinase superfamily protein; symbol=APK1A; curator_summary=Protein kinase capable of phosphorylating tyrosine%2C serine%2C and threonine residues; computational_description=APK1A%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C kinase activity%3B INVOLVED IN: protein amino acid phosphorylation%2C N-terminal protein myristoylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: protein kinase 1B (TAIR:AT2G28930.2)%3B Has 112484 Blast hits to 111280 proteins in 3934 species: Archae - 89%3B Bacteria - 12638%3B Metazoa - 42028%3B Fungi - 9086%3B Plants - 32321%3B Viruses - 355%3B Other Eukaryotes - 15967 (source: NCBI BLink).; Dbxref=PMID:9150601, PMID:1450380, PMID:11526204, PMID:12912986, PMID:14576160, PMID:16339855, PMID:19304933, PMID:20042022, PMID:21477822, locus:2024962; locus_type=protein_coding
AT1G07570.5	chr1:002331369	0.0	C/2331369-2331838,2331923-2332046,2332152-2332294,2332397-2332532,2332614-2332930,2333168-2333210	AT1G07570.5 CDS AT1G07570 ID=AT1G07570.5; Parent=AT1G07570; Name=AT1G07570.5; Note=Protein kinase superfamily protein; symbol=APK1A; Dbxref=PMID:9150601, PMID:1450380, PMID:11526204, PMID:12912986, PMID:14576160, PMID:16339855, PMID:19304933, PMID:20042022, PMID:21477822, locus:2024962; curator_summary=Protein kinase capable of phosphorylating tyrosine%2C serine%2C and threonine residues; computational_description=APK1A%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C kinase activity%3B INVOLVED IN: protein amino acid phosphorylation%2C N-terminal protein myristoylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: protein kinase 1B (TAIR:AT2G28930.2)%3B Has 112484 Blast hits to 111280 proteins in 3934 species: Archae - 89%3B Bacteria - 12638%3B Metazoa - 42028%3B Fungi - 9086%3B Plants - 32321%3B Viruses - 355%3B Other Eukaryotes - 15967 (source: NCBI BLink).; locus_type=protein_coding
AT1G04597.1	chr1:002334333	0.0	W/2334333-2334599	AT1G04597.1 lnc_RNA AT1G04597 ID=AT1G04597.1; Parent=AT1G04597; Name=AT1G04597.1; locus_type=long_noncoding_rna
AT1G07580.1	chr1:002334822	0.0	W/2334822-2334894	AT1G07580.1 tRNA AT1G07580 ID=AT1G07580.1; Parent=AT1G07580; Note=tRNA-Ala; computational_description=tRNA-Ala (anticodon: AGC); Dbxref=PMID:8980477, PMID:23066098, PMID:8980477, locus:3689048; Name=AT1G07580.1; locus_type=pre_trna
AT1TE07620	chr1:002335043	0.0	C/2335043-2335261,2335496-2335717	AT1TE07620 transposable_element AT1TE07620 ID=AT1TE07620; Name=AT1TE07620; Alias=ATREP3
AT1TE07625	chr1:002335262	0.0	C/2335262-2335495	AT1TE07625 transposable_element AT1TE07625 ID=AT1TE07625; Name=AT1TE07625; Alias=ATTIRTA1
AT1G07590.1	chr1:002336649	0.0	C/2336649-2337899,2338128-2338481	AT1G07590.1 CDS AT1G07590 ID=AT1G07590.1; Parent=AT1G07590; Name=AT1G07590.1; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; conf_class=2; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B INVOLVED IN: response to cadmium ion%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: 4 anthesis%2C F mature embryo stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: PENTATRICOPEPTIDE REPEAT 596 (TAIR:AT1G80270.3)%3B Has 14416 Blast hits to 6927 proteins in 166 species: Archae - 0%3B Bacteria - 10%3B Metazoa - 31%3B Fungi - 36%3B Plants - 14001%3B Viruses - 0%3B Other Eukaryotes - 338 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16014362, PMID:16502469, PMID:17346352, PMID:18650403, PMID:18684332, locus:2024952; locus_type=protein_coding
AT1G07600.1	chr1:002338904	0.0	C/2338904-2338985,2339266-2339321	AT1G07600.1 CDS AT1G07600 ID=AT1G07600.1; Parent=AT1G07600; Name=AT1G07600.1; Note=metallothionein 1A; curator_summary=metallothionein%2C binds to and detoxifies excess copper and other metals%2C limiting oxidative damage.; conf_class=1; symbol=MT1A; Alias=ATMT-2, METALLOTHIONEIN 2, ATMT-Q, ATMT1, ARABIDOPSIS METALLOTHIONEIN 1, LSR4, LIGHT STRESS-REGULATED 4, MT-Q, METALLOTHIONEIN Q, MT1, METALLOTHIONEIN 1; full_name=metallothionein 1A; computational_description=metallothionein 1A (MT1A)%3B BEST Arabidopsis thaliana protein match is: metallothionein 1C (TAIR:AT1G07610.1)%3B Has 370 Blast hits to 296 proteins in 102 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 99%3B Fungi - 13%3B Plants - 182%3B Viruses - 0%3B Other Eukaryotes - 74 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:10444084, PMID:9765524, PMID:9112777, PMID:8552721, PMID:7565594, PMID:7612924, PMID:8061521, PMID:11683875, PMID:18287486, PMID:18650403, PMID:18775970, PMID:18631293, PMID:16240177, PMID:23808399, PMID:24635746, locus:2025082; locus_type=protein_coding
AT1G04603.1	chr1:002340559	0.0	W/2340559-2341109	AT1G04603.1 lnc_RNA AT1G04603 ID=AT1G04603.1; Parent=AT1G04603; Name=AT1G04603.1; locus_type=long_noncoding_rna
AT1G07610.1	chr1:002341603	0.0	W/2341603-2341658,2341784-2341865	AT1G07610.1 CDS AT1G07610 ID=AT1G07610.1; Parent=AT1G07610; Name=AT1G07610.1; Note=metallothionein 1C; curator_summary=one of the five metallothioneins (MTs) genes identified in Arabidopsis. MTs are cysteine-rich proteins required for heavy metal tolerance.; conf_class=1; symbol=MT1C; full_name=metallothionein 1C; computational_description=metallothionein 1C (MT1C)%3B FUNCTIONS IN: copper ion binding%3B INVOLVED IN: response to copper ion%3B LOCATED IN: cytosolic ribosome%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B BEST Arabidopsis thaliana protein match is: metallothionein 1A (TAIR:AT1G07600.1)%3B Has 443 Blast hits to 367 proteins in 121 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 106%3B Fungi - 13%3B Plants - 241%3B Viruses - 0%3B Other Eukaryotes - 79 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:7565594, PMID:12169696, PMID:12368493, PMID:12509532, PMID:14730065, PMID:15235117, PMID:15546358, PMID:15821981, PMID:16299181, PMID:16684236, PMID:18631293, PMID:16240177, locus:2025097; locus_type=protein_coding
AT1G07615.1	chr1:002342277	0.0	C/2342277-2343365,2343459-2343521,2343610-2343692,2343855-2343963,2344063-2344200	AT1G07615.1 CDS AT1G07615 ID=AT1G07615.1; Parent=AT1G07615; Name=AT1G07615.1; Note=GTP-binding protein Obg/CgtA; conf_class=1; Alias=Obg A-1; computational_description=GTP-binding protein Obg/CgtA%3B FUNCTIONS IN: magnesium ion binding%2C GTP binding%2C GTPase activity%3B LOCATED IN: intracellular%3B EXPRESSED IN: 14 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: GTP1/OBG subdomain (InterPro:IPR006169)%2C GTP1/OBG (InterPro:IPR006073)%2C GTP-binding protein%2C HSR1-related (InterPro:IPR002917)%2C GTP-binding protein Obg/CgtA (InterPro:IPR014100)%3B BEST Arabidopsis thaliana protein match is: GTP1/OBG family protein (TAIR:AT5G18570.1)%3B Has 28571 Blast hits to 22114 proteins in 2954 species: Archae - 681%3B Bacteria - 18882%3B Metazoa - 872%3B Fungi - 715%3B Plants - 429%3B Viruses - 2%3B Other Eukaryotes - 6990 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:20032078, PMID:25566271, locus:4010713419; locus_type=protein_coding
AT1G07620.1	chr1:002344556	0.0	C/2344556-2345067,2345146-2346162,2346245-2346374	AT1G07620.1 CDS AT1G07620 ID=AT1G07620.1; Parent=AT1G07620; Name=AT1G07620.1; Note=GTP-binding protein Obg/CgtA; conf_class=1; symbol=ATOBGM; computational_description=ATOBGM%3B FUNCTIONS IN: magnesium ion binding%2C GTP binding%2C GTPase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: GTP-binding protein Obg/CgtA (InterPro:IPR014100)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3741) (TAIR:AT5G02390.1)%3B Has 561 Blast hits to 511 proteins in 87 species: Archae - 0%3B Bacteria - 20%3B Metazoa - 47%3B Fungi - 31%3B Plants - 219%3B Viruses - 2%3B Other Eukaryotes - 242 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:19636801, PMID:20736450, PMID:22286137, locus:2024947; locus_type=protein_coding
AT1G07620.2	chr1:002344556	0.0	C/2344556-2346162,2346245-2346374	AT1G07620.2 CDS AT1G07620 ID=AT1G07620.2; Parent=AT1G07620; Name=AT1G07620.2; Note=GTP-binding protein Obg/CgtA; symbol=ATOBGM; computational_description=ATOBGM%3B FUNCTIONS IN: magnesium ion binding%2C GTP binding%2C GTPase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: GTP-binding protein Obg/CgtA (InterPro:IPR014100)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3741) (TAIR:AT5G02390.1)%3B Has 561 Blast hits to 511 proteins in 87 species: Archae - 0%3B Bacteria - 20%3B Metazoa - 47%3B Fungi - 31%3B Plants - 219%3B Viruses - 2%3B Other Eukaryotes - 242 (source: NCBI BLink).; Dbxref=PMID:19636801, PMID:20736450, PMID:22286137, locus:2024947; locus_type=protein_coding
AT1G07620.3	chr1:002344556	0.0	C/2344556-2345067,2345146-2346162,2346245-2346374	AT1G07620.3 CDS AT1G07620 ID=AT1G07620.3; Parent=AT1G07620; Name=AT1G07620.3; Note=GTP-binding protein Obg/CgtA; symbol=ATOBGM; Dbxref=PMID:19636801, PMID:20736450, PMID:22286137, locus:2024947; computational_description=ATOBGM%3B FUNCTIONS IN: magnesium ion binding%2C GTP binding%2C GTPase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: GTP-binding protein Obg/CgtA (InterPro:IPR014100)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3741) (TAIR:AT5G02390.1)%3B Has 561 Blast hits to 511 proteins in 87 species: Archae - 0%3B Bacteria - 20%3B Metazoa - 47%3B Fungi - 31%3B Plants - 219%3B Viruses - 2%3B Other Eukaryotes - 242 (source: NCBI BLink).; locus_type=protein_coding
AT1G07620.4	chr1:002344556	0.0	C/2344556-2345067,2345146-2346162,2346245-2346374	AT1G07620.4 CDS AT1G07620 ID=AT1G07620.4; Parent=AT1G07620; Name=AT1G07620.4; Note=GTP-binding protein Obg/CgtA; symbol=ATOBGM; Dbxref=PMID:19636801, PMID:20736450, PMID:22286137, locus:2024947; computational_description=ATOBGM%3B FUNCTIONS IN: magnesium ion binding%2C GTP binding%2C GTPase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: GTP-binding protein Obg/CgtA (InterPro:IPR014100)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3741) (TAIR:AT5G02390.1)%3B Has 561 Blast hits to 511 proteins in 87 species: Archae - 0%3B Bacteria - 20%3B Metazoa - 47%3B Fungi - 31%3B Plants - 219%3B Viruses - 2%3B Other Eukaryotes - 242 (source: NCBI BLink).; locus_type=protein_coding
AT1G04607.1	chr1:002348027	0.0	C/2348027-2348447	AT1G04607.1 lnc_RNA AT1G04607 ID=AT1G04607.1; Parent=AT1G04607; Name=AT1G04607.1; locus_type=long_noncoding_rna
AT1G07630.1	chr1:002349189	0.0	W/2349189-2350682,2350772-2350885,2350973-2351237,2351322-2351437	AT1G07630.1 CDS AT1G07630 ID=AT1G07630.1; Parent=AT1G07630; Name=AT1G07630.1; Note=pol-like 5; curator_summary=Encodes a protein phosphatase 2C like gene%2C similar to POL. Involved in leaf development. Knockout mutants have abnormally shaped leaves.; conf_class=2; symbol=PLL5; full_name=pol-like 5; computational_description=pol-like 5 (PLL5)%3B FUNCTIONS IN: protein serine/threonine phosphatase activity%2C catalytic activity%3B INVOLVED IN: N-terminal protein myristoylation%2C leaf development%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932)%2C Protein phosphatase 2C (InterPro:IPR015655)%2C Protein phosphatase 2C%2C N-terminal (InterPro:IPR014045)%3B BEST Arabidopsis thaliana protein match is: poltergeist like 4 (TAIR:AT2G28890.1)%3B Has 2889 Blast hits to 2855 proteins in 251 species: Archae - 0%3B Bacteria - 18%3B Metazoa - 486%3B Fungi - 220%3B Plants - 1762%3B Viruses - 0%3B Other Eukaryotes - 403 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12068129, PMID:12912986, PMID:15130549, PMID:16112663, PMID:18650403, PMID:18775970, PMID:19021904, PMID:20736450, locus:2026605; locus_type=protein_coding
AT1G04613.1	chr1:002352131	0.0	C/2352131-2352911	AT1G04613.1 transcript_region AT1G04613 ID=AT1G04613.1; Parent=AT1G04613; computational_description=novel transcribed region%3B detected in carpel%2C leaf%2C dark-grown seedling%2C light-grown seedling; Name=AT1G04613.1; locus_type=novel_transcribed_region
AT1G07640.1	chr1:002354707	0.0	C/2354707-2355534	AT1G07640.1 CDS AT1G07640 ID=AT1G07640.1; Parent=AT1G07640; Name=AT1G07640.1; Note=Dof-type zinc finger DNA-binding family protein; curator_summary=A member of the DOF transcription factors. Prominently expressed in the phloem of leaves and other organs. Expression is induced by wounding%2C MeJA and insect feeding. Upregulates glucosinolate biosynthesis.; conf_class=1; symbol=OBP2; computational_description=OBP2%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C Dof-type (InterPro:IPR003851)%3B BEST Arabidopsis thaliana protein match is: Dof-type zinc finger DNA-binding family protein (TAIR:AT2G28810.2)%3B Has 1592 Blast hits to 1530 proteins in 87 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 20%3B Fungi - 15%3B Plants - 1085%3B Viruses - 0%3B Other Eukaryotes - 468 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:10758484, PMID:11118137, PMID:12475498, PMID:12694592, PMID:12877745, PMID:15923329, PMID:16581911, PMID:16820983, PMID:16740150, PMID:16980566, PMID:22037706, PMID:23057675, locus:2026595; locus_type=protein_coding
AT1G07640.2	chr1:002354707	0.0	C/2354707-2355699,2355796-2355798	AT1G07640.2 CDS AT1G07640 ID=AT1G07640.2; Parent=AT1G07640; Name=AT1G07640.2; Note=Dof-type zinc finger DNA-binding family protein; curator_summary=A member of the DOF transcription factors. Prominently expressed in the phloem of leaves and other organs. Expression is induced by wounding%2C MeJA and insect feeding. Upregulates glucosinolate biosynthesis.; conf_class=1; symbol=OBP2; computational_description=OBP2%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C Dof-type (InterPro:IPR003851)%3B BEST Arabidopsis thaliana protein match is: Dof-type zinc finger DNA-binding family protein (TAIR:AT2G28810.2)%3B Has 1592 Blast hits to 1530 proteins in 87 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 20%3B Fungi - 15%3B Plants - 1085%3B Viruses - 0%3B Other Eukaryotes - 468 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:10758484, PMID:11118137, PMID:12475498, PMID:12694592, PMID:12877745, PMID:15923329, PMID:16581911, PMID:16820983, PMID:16740150, PMID:16980566, PMID:22037706, PMID:23057675, locus:2026595; locus_type=protein_coding
AT1G07640.3	chr1:002354707	0.0	C/2354707-2355699,2355986-2356012	AT1G07640.3 CDS AT1G07640 ID=AT1G07640.3; Parent=AT1G07640; Name=AT1G07640.3; Note=Dof-type zinc finger DNA-binding family protein; curator_summary=A member of the DOF transcription factors. Prominently expressed in the phloem of leaves and other organs. Expression is induced by wounding%2C MeJA and insect feeding. Upregulates glucosinolate biosynthesis.; conf_class=2; symbol=OBP2; computational_description=OBP2%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C Dof-type (InterPro:IPR003851)%3B BEST Arabidopsis thaliana protein match is: Dof-type zinc finger DNA-binding family protein (TAIR:AT2G28810.2)%3B Has 1592 Blast hits to 1530 proteins in 87 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 20%3B Fungi - 15%3B Plants - 1085%3B Viruses - 0%3B Other Eukaryotes - 468 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10758484, PMID:11118137, PMID:12475498, PMID:12694592, PMID:12877745, PMID:15923329, PMID:16581911, PMID:16820983, PMID:16740150, PMID:16980566, PMID:22037706, PMID:23057675, locus:2026595; locus_type=protein_coding
AT1G07650.1	chr1:002359817	0.0	C/2359817-2360176,2360270-2360420,2360512-2360752,2360841-2361051,2361161-2361279,2361382-2361522,2361617-2361812,2361904-2362298,2362415-2362473,2362630-2362665,2362752-2362820,2362905-2362970,2363039-2363110,2363214-2363285,2363365-2363436,2363541-2363612,2363691-2363762,2363858-2363929,2364093-2364164,2364296-2364367,2364454-2364522,2364620-2364691,2366005-2366185,2366321-2366423	AT1G07650.1 CDS AT1G07650 ID=AT1G07650.1; Parent=AT1G07650; Name=AT1G07650.1; Note=Leucine-rich repeat transmembrane protein kinase; conf_class=2; computational_description=Leucine-rich repeat transmembrane protein kinase%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%2C transmembrane receptor protein tyrosine kinase signaling pathway%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase (TAIR:AT1G53430.1)%3B Has 190432 Blast hits to 138472 proteins in 4783 species: Archae - 131%3B Bacteria - 16225%3B Metazoa - 53388%3B Fungi - 11706%3B Plants - 85318%3B Viruses - 481%3B Other Eukaryotes - 23183 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12972053, PMID:15258262, PMID:21477822, locus:2026585; locus_type=protein_coding
AT1G07650.2	chr1:002359817	0.0	C/2359817-2360176,2360270-2360420,2360512-2360752,2360841-2361051,2361161-2361279,2361382-2361522,2361617-2361812,2361904-2362298,2362415-2362473,2362630-2362665,2362752-2362820,2362905-2362970,2363039-2363110,2363214-2363285,2363365-2363436,2363541-2363612,2363691-2363762,2363858-2363929,2364093-2364164,2364296-2364367,2364454-2364522,2364620-2364709,2366005-2366185,2366321-2366423	AT1G07650.2 CDS AT1G07650 ID=AT1G07650.2; Parent=AT1G07650; Name=AT1G07650.2; Note=Leucine-rich repeat transmembrane protein kinase; conf_class=3; computational_description=Leucine-rich repeat transmembrane protein kinase%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%2C transmembrane receptor protein tyrosine kinase signaling pathway%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase (TAIR:AT1G53430.1)%3B Has 190432 Blast hits to 138472 proteins in 4783 species: Archae - 131%3B Bacteria - 16225%3B Metazoa - 53388%3B Fungi - 11706%3B Plants - 85318%3B Viruses - 481%3B Other Eukaryotes - 23183 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12972053, PMID:15258262, PMID:21477822, locus:2026585; locus_type=protein_coding
AT1G07650.3	chr1:002359817	0.0	C/2359817-2360176,2360270-2360420,2360512-2360752,2360841-2361051,2361161-2361279,2361382-2361522,2361617-2361682,2361761-2361812,2361904-2362298,2362415-2362473,2362630-2362665,2362752-2362820,2362905-2362970,2363039-2363110,2363214-2363285,2363365-2363436,2363541-2363612,2363691-2363762,2363858-2363929,2364093-2364164,2364296-2364367,2364454-2364522,2364620-2364691,2366005-2366185,2366321-2366423	AT1G07650.3 CDS AT1G07650 ID=AT1G07650.3; Parent=AT1G07650; Name=AT1G07650.3; Note=Leucine-rich repeat transmembrane protein kinase; computational_description=Leucine-rich repeat transmembrane protein kinase%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%2C transmembrane receptor protein tyrosine kinase signaling pathway%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase (TAIR:AT1G53430.1)%3B Has 190432 Blast hits to 138472 proteins in 4783 species: Archae - 131%3B Bacteria - 16225%3B Metazoa - 53388%3B Fungi - 11706%3B Plants - 85318%3B Viruses - 481%3B Other Eukaryotes - 23183 (source: NCBI BLink).; Dbxref=PMID:12972053, PMID:15258262, PMID:21477822, locus:2026585; locus_type=protein_coding
AT1G07650.4	chr1:002359817	0.0	C/2359817-2360176,2360270-2360420,2360512-2360752,2360841-2361051,2361161-2361279,2361382-2361522,2361617-2361812,2361904-2362298,2362415-2362473,2362630-2362665,2362752-2362820,2362905-2362970,2363039-2363110,2363214-2363285,2363365-2363436,2363541-2363612,2363691-2363762,2363858-2363859	AT1G07650.4 CDS AT1G07650 ID=AT1G07650.4; Parent=AT1G07650; Name=AT1G07650.4; Note=Leucine-rich repeat transmembrane protein kinase; computational_description=Leucine-rich repeat transmembrane protein kinase%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%2C transmembrane receptor protein tyrosine kinase signaling pathway%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase (TAIR:AT1G53430.1)%3B Has 190432 Blast hits to 138472 proteins in 4783 species: Archae - 131%3B Bacteria - 16225%3B Metazoa - 53388%3B Fungi - 11706%3B Plants - 85318%3B Viruses - 481%3B Other Eukaryotes - 23183 (source: NCBI BLink).; Dbxref=PMID:12972053, PMID:15258262, PMID:21477822, locus:2026585; locus_type=protein_coding
AT1G07645.1	chr1:002367612	0.0	C/2367612-2367734,2367829-2367991,2368222-2368349	AT1G07645.1 CDS AT1G07645 ID=AT1G07645.1; Parent=AT1G07645; Name=AT1G07645.1; Note=dessication-induced 1VOC superfamily protein; conf_class=2; symbol=DSI-1VOC; Alias=ATDSI-1VOC, dessication-induced 1VOC superfamily protein; full_name=dessication-induced 1VOC superfamily protein; computational_description=dessication-induced 1VOC superfamily protein (DSI-1VOC)%3B FUNCTIONS IN: catalytic activity%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: seed%3B CONTAINS InterPro DOMAIN/s: Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18791196, PMID:21213008, locus:1006230726; locus_type=protein_coding
AT1G07660.1	chr1:002369212	0.0	W/2369212-2369523	AT1G07660.1 CDS AT1G07660 ID=AT1G07660.1; Parent=AT1G07660; Name=AT1G07660.1; Note=Histone superfamily protein; conf_class=1; computational_description=Histone superfamily protein%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: nucleosome assembly%3B LOCATED IN: plasma membrane%2C chloroplast%3B EXPRESSED IN: cultured cell%3B CONTAINS InterPro DOMAIN/s: Histone H4%2C conserved site (InterPro:IPR019809)%2C Histone-fold (InterPro:IPR009072)%2C Histone core (InterPro:IPR007125)%2C Histone H4 (InterPro:IPR001951)%3B BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G59690.1)%3B Has 3178 Blast hits to 3178 proteins in 446 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1790%3B Fungi - 358%3B Plants - 490%3B Viruses - 6%3B Other Eukaryotes - 534 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16489130, locus:2026570; locus_type=protein_coding
AT1G07660.2	chr1:002369212	0.0	W/2369212-2369256,2369308-2369523	AT1G07660.2 CDS AT1G07660 ID=AT1G07660.2; Parent=AT1G07660; Name=AT1G07660.2; Note=Histone superfamily protein; conf_class=2; computational_description=Histone superfamily protein%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: nucleosome assembly%3B LOCATED IN: plasma membrane%2C chloroplast%3B EXPRESSED IN: cultured cell%3B CONTAINS InterPro DOMAIN/s: Histone H4%2C conserved site (InterPro:IPR019809)%2C Histone-fold (InterPro:IPR009072)%2C Histone core (InterPro:IPR007125)%2C Histone H4 (InterPro:IPR001951)%3B BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G59690.1)%3B Has 3178 Blast hits to 3178 proteins in 446 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1790%3B Fungi - 358%3B Plants - 490%3B Viruses - 6%3B Other Eukaryotes - 534 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16489130, locus:2026570; locus_type=protein_coding
AT1G07670.1	chr1:002370305	0.0	C/2370305-2370889,2370968-2371196,2371291-2371400,2371482-2371859,2371947-2372228,2372383-2372504,2372596-2372662,2372784-2374196	AT1G07670.1 CDS AT1G07670 ID=AT1G07670.1; Parent=AT1G07670; Name=AT1G07670.1; Note=endomembrane-type CA-ATPase 4; conf_class=2; symbol=ECA4; Alias=ATECA4; full_name=endomembrane-type CA-ATPase 4; computational_description=endomembrane-type CA-ATPase 4 (ECA4)%3B FUNCTIONS IN: calcium-transporting ATPase activity%3B INVOLVED IN: cation transport%2C calcium ion transport%2C metabolic process%2C ATP biosynthetic process%3B LOCATED IN: endoplasmic reticulum%2C plasma membrane%3B EXPRESSED IN: guard cell%2C callus%2C cultured cell%3B CONTAINS InterPro DOMAIN/s: ATPase%2C P-type%2C ATPase-associated domain (InterPro:IPR008250)%2C ATPase%2C P-type%2C calcium-transporting (InterPro:IPR005782)%2C ATPase%2C P-type cation-transporter%2C N-terminal (InterPro:IPR004014)%2C Haloacid dehalogenase-like hydrolase (InterPro:IPR005834)%2C ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757)%2C ATPase%2C P-type phosphorylation site (InterPro:IPR018303)%2C ATPase%2C P-type cation-transporter%2C C-terminal (InterPro:IPR006068)%3B BEST Arabidopsis thaliana protein match is: ER-type Ca2+-ATPase 1 (TAIR:AT1G07810.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11402198, PMID:12226493, PMID:12566592, PMID:12805592, PMID:12969422, PMID:16618929, PMID:17885809, PMID:18567829, PMID:22635117, locus:2026555; locus_type=protein_coding
AT1G07670.2	chr1:002370305	0.0	C/2370305-2370889,2370968-2371196,2371291-2371400,2371482-2371859,2371947-2372228,2372383-2372504,2372596-2372662,2372784-2374196	AT1G07670.2 CDS AT1G07670 ID=AT1G07670.2; Parent=AT1G07670; Name=AT1G07670.2; Note=endomembrane-type CA-ATPase 4; symbol=ECA4; Alias=ATECA4; full_name=endomembrane-type CA-ATPase 4; Dbxref=PMID:11402198, PMID:12226493, PMID:12566592, PMID:12805592, PMID:12969422, PMID:16618929, PMID:17885809, PMID:18567829, PMID:22635117, locus:2026555; computational_description=endomembrane-type CA-ATPase 4 (ECA4)%3B FUNCTIONS IN: calcium-transporting ATPase activity%3B INVOLVED IN: cation transport%2C calcium ion transport%2C metabolic process%2C ATP biosynthetic process%3B LOCATED IN: endoplasmic reticulum%2C plasma membrane%3B EXPRESSED IN: guard cell%2C callus%2C cultured cell%3B CONTAINS InterPro DOMAIN/s: ATPase%2C P-type%2C ATPase-associated domain (InterPro:IPR008250)%2C ATPase%2C P-type%2C calcium-transporting (InterPro:IPR005782)%2C ATPase%2C P-type cation-transporter%2C N-terminal (InterPro:IPR004014)%2C Haloacid dehalogenase-like hydrolase (InterPro:IPR005834)%2C ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757)%2C ATPase%2C P-type phosphorylation site (InterPro:IPR018303)%2C ATPase%2C P-type cation-transporter%2C C-terminal (InterPro:IPR006068)%3B BEST Arabidopsis thaliana protein match is: ER-type Ca2+-ATPase 1 (TAIR:AT1G07810.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; locus_type=protein_coding
AT1TE07750	chr1:002374980	0.0	C/2374980-2375519	AT1TE07750 transposable_element AT1TE07750 ID=AT1TE07750; Name=AT1TE07750; Alias=HELITRONY1D
AT1G07680.1	chr1:002376062	0.0	W/2376062-2376131,2376268-2376543,2376881-2376993	AT1G07680.1 CDS AT1G07680 ID=AT1G07680.1; Parent=AT1G07680; Name=AT1G07680.1; Note=transmembrane protein; conf_class=1; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23903.1)%3B Has 7 Blast hits to 7 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 7%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:20736450, locus:2026540; locus_type=protein_coding
AT1G07690.2	chr1:002377983	0.0	W/2377983-2378170,2378267-2378433,2378543-2378587,2378678-2378842,2378933-2379000	AT1G07690.2 CDS AT1G07690 ID=AT1G07690.2; Parent=AT1G07690; Name=AT1G07690.2; Note=transmembrane protein; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: root%3B CONTAINS InterPro DOMAIN/s: Orthoreovirus membrane fusion p10 (InterPro:IPR009854)%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54950.1)%3B Has 11 Blast hits to 11 proteins in 4 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 0%3B Fungi - 0%3B Plants - 7%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; Dbxref=locus:2026520; locus_type=protein_coding
AT1G07690.3	chr1:002377983	0.0	W/2377983-2378170,2378267-2378421,2378543-2378587,2378678-2378842,2378933-2379000	AT1G07690.3 CDS AT1G07690 ID=AT1G07690.3; Parent=AT1G07690; Name=AT1G07690.3; Note=transmembrane protein; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: root%3B CONTAINS InterPro DOMAIN/s: Orthoreovirus membrane fusion p10 (InterPro:IPR009854)%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54950.1)%3B Has 11 Blast hits to 11 proteins in 4 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 0%3B Fungi - 0%3B Plants - 7%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; Dbxref=locus:2026520; locus_type=protein_coding
AT1G07690.1	chr1:002378076	0.0	W/2378076-2378170,2378267-2378421,2378543-2378587,2378678-2378854,2378933-2379000	AT1G07690.1 CDS AT1G07690 ID=AT1G07690.1; Parent=AT1G07690; Name=AT1G07690.1; Note=transmembrane protein; conf_class=6; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: root%3B CONTAINS InterPro DOMAIN/s: Orthoreovirus membrane fusion p10 (InterPro:IPR009854)%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54950.1)%3B Has 11 Blast hits to 11 proteins in 4 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 0%3B Fungi - 0%3B Plants - 7%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=**; Dbxref=locus:2026520; locus_type=protein_coding
AT1G07690.4	chr1:002378076	0.0	W/2378076-2378170,2378267-2378433,2378543-2378587,2378678-2378854,2378933-2379000	AT1G07690.4 CDS AT1G07690 ID=AT1G07690.4; Parent=AT1G07690; Name=AT1G07690.4; Note=transmembrane protein; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: root%3B CONTAINS InterPro DOMAIN/s: Orthoreovirus membrane fusion p10 (InterPro:IPR009854)%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54950.1)%3B Has 11 Blast hits to 11 proteins in 4 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 0%3B Fungi - 0%3B Plants - 7%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; Dbxref=locus:2026520; locus_type=protein_coding
AT1G07690.5	chr1:002378076	0.0	W/2378076-2378170,2378267-2378433,2378543-2378587,2378678-2378842,2378933-2379000	AT1G07690.5 CDS AT1G07690 ID=AT1G07690.5; Parent=AT1G07690; Name=AT1G07690.5; Note=transmembrane protein; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: root%3B CONTAINS InterPro DOMAIN/s: Orthoreovirus membrane fusion p10 (InterPro:IPR009854)%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54950.1)%3B Has 11 Blast hits to 11 proteins in 4 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 0%3B Fungi - 0%3B Plants - 7%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; Dbxref=locus:2026520; locus_type=protein_coding
AT1G07700.1	chr1:002380214	0.0	W/2380214-2380231,2380354-2380782,2380871-2380924,2381014-2381127	AT1G07700.1 CDS AT1G07700 ID=AT1G07700.1; Parent=AT1G07700; Name=AT1G07700.1; Note=Thioredoxin superfamily protein; conf_class=2; computational_description=Thioredoxin superfamily protein%3B INVOLVED IN: cell redox homeostasis%3B LOCATED IN: chloroplast stroma%2C chloroplast%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335)%2C Thioredoxin%2C core (InterPro:IPR015467)%2C Thioredoxin-like (InterPro:IPR017936)%2C Thioredoxin domain (InterPro:IPR013766)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT1G19730.1)%3B Has 1987 Blast hits to 1985 proteins in 408 species: Archae - 6%3B Bacteria - 244%3B Metazoa - 551%3B Fungi - 299%3B Plants - 574%3B Viruses - 3%3B Other Eukaryotes - 310 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15200639, PMID:17031546, PMID:18650403, PMID:18775970, PMID:20736450, locus:2026504; locus_type=protein_coding
AT1G07700.2	chr1:002380214	0.0	W/2380214-2380231,2380354-2380782,2380871-2380924,2381014-2381127	AT1G07700.2 CDS AT1G07700 ID=AT1G07700.2; Parent=AT1G07700; Name=AT1G07700.2; Note=Thioredoxin superfamily protein; conf_class=1; computational_description=Thioredoxin superfamily protein%3B INVOLVED IN: cell redox homeostasis%3B LOCATED IN: chloroplast stroma%2C chloroplast%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335)%2C Thioredoxin%2C core (InterPro:IPR015467)%2C Thioredoxin-like (InterPro:IPR017936)%2C Thioredoxin domain (InterPro:IPR013766)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT1G19730.1)%3B Has 1987 Blast hits to 1985 proteins in 408 species: Archae - 6%3B Bacteria - 244%3B Metazoa - 551%3B Fungi - 299%3B Plants - 574%3B Viruses - 3%3B Other Eukaryotes - 310 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15200639, PMID:17031546, PMID:18650403, PMID:18775970, PMID:20736450, locus:2026504; locus_type=protein_coding
AT1G07700.4	chr1:002380214	0.0	W/2380214-2380231,2380354-2380782,2380871-2380924,2381014-2381127	AT1G07700.4 CDS AT1G07700 ID=AT1G07700.4; Parent=AT1G07700; Name=AT1G07700.4; Note=Thioredoxin superfamily protein; Dbxref=PMID:15200639, PMID:17031546, PMID:18650403, PMID:18775970, PMID:20736450, locus:2026504; computational_description=Thioredoxin superfamily protein%3B INVOLVED IN: cell redox homeostasis%3B LOCATED IN: chloroplast stroma%2C chloroplast%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335)%2C Thioredoxin%2C core (InterPro:IPR015467)%2C Thioredoxin-like (InterPro:IPR017936)%2C Thioredoxin domain (InterPro:IPR013766)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT1G19730.1)%3B Has 1987 Blast hits to 1985 proteins in 408 species: Archae - 6%3B Bacteria - 244%3B Metazoa - 551%3B Fungi - 299%3B Plants - 574%3B Viruses - 3%3B Other Eukaryotes - 310 (source: NCBI BLink).; locus_type=protein_coding
AT1G07700.3	chr1:002380297	0.0	W/2380297-2380782,2380871-2380924,2381014-2381127	AT1G07700.3 CDS AT1G07700 ID=AT1G07700.3; Parent=AT1G07700; Name=AT1G07700.3; Note=Thioredoxin superfamily protein; conf_class=2; computational_description=Thioredoxin superfamily protein%3B INVOLVED IN: cell redox homeostasis%3B LOCATED IN: chloroplast stroma%2C chloroplast%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335)%2C Thioredoxin%2C core (InterPro:IPR015467)%2C Thioredoxin-like (InterPro:IPR017936)%2C Thioredoxin domain (InterPro:IPR013766)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT1G19730.1)%3B Has 1987 Blast hits to 1985 proteins in 408 species: Archae - 6%3B Bacteria - 244%3B Metazoa - 551%3B Fungi - 299%3B Plants - 574%3B Viruses - 3%3B Other Eukaryotes - 310 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15200639, PMID:17031546, PMID:18650403, PMID:18775970, PMID:20736450, locus:2026504; locus_type=protein_coding
AT1G07705.1	chr1:002382090	0.0	W/2382090-2382107,2382223-2382331,2382404-2382582,2382682-2382730,2382840-2383049,2383347-2383553,2383642-2383743,2384126-2384214,2384313-2384465,2384572-2384997,2385107-2385159,2385237-2385282	AT1G07705.1 CDS AT1G07705 ID=AT1G07705.1; Parent=AT1G07705; Name=AT1G07705.1; Note=NOT2 / NOT3 / NOT5 family; conf_class=2; Alias=NOT2a, Negative on TATA less2a; computational_description=NOT2 / NOT3 / NOT5 family%3B FUNCTIONS IN: transcription regulator activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: nucleus%2C chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: NOT2/NOT3/NOT5 (InterPro:IPR007282)%3B BEST Arabidopsis thaliana protein match is: VIRE2 interacting protein 2 (TAIR:AT5G59710.1)%3B Has 2858 Blast hits to 2245 proteins in 417 species: Archae - 0%3B Bacteria - 989%3B Metazoa - 670%3B Fungi - 343%3B Plants - 147%3B Viruses - 8%3B Other Eukaryotes - 701 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, PMID:23424246, locus:505006107; locus_type=protein_coding
AT1G07705.2	chr1:002382090	0.0	W/2382090-2382107,2382223-2382331,2382404-2382582,2382682-2382730,2382840-2383049,2383347-2383553,2383642-2383743,2384126-2384214,2384313-2384465,2384572-2384997,2385107-2385159,2385237-2385278,2385570-2385708,2385788-2385856	AT1G07705.2 CDS AT1G07705 ID=AT1G07705.2; Parent=AT1G07705; Name=AT1G07705.2; Note=NOT2 / NOT3 / NOT5 family; conf_class=3; Alias=NOT2a, Negative on TATA less2a; computational_description=NOT2 / NOT3 / NOT5 family%3B FUNCTIONS IN: transcription regulator activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: nucleus%2C chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: NOT2/NOT3/NOT5 (InterPro:IPR007282)%3B BEST Arabidopsis thaliana protein match is: VIRE2 interacting protein 2 (TAIR:AT5G59710.1)%3B Has 2858 Blast hits to 2245 proteins in 417 species: Archae - 0%3B Bacteria - 989%3B Metazoa - 670%3B Fungi - 343%3B Plants - 147%3B Viruses - 8%3B Other Eukaryotes - 701 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, PMID:23424246, locus:505006107; locus_type=protein_coding
AT1G07702.1	chr1:002382251	0.0	C/2382251-2382331	AT1G07702.1 snoRNA AT1G07702 ID=AT1G07702.1; Parent=AT1G07702; computational_description=snoRNA; Dbxref=PMID:22820990, locus:3689377; Name=AT1G07702.1; Note=snoRNA; locus_type=small_nucleolar_rna
AT1TE07780	chr1:002383162	0.0	C/2383162-2383320	AT1TE07780 transposable_element AT1TE07780 ID=AT1TE07780; Name=AT1TE07780; Alias=ATTIRX1D
AT1G07710.1	chr1:002386275	0.0	C/2386275-2387563,2387644-2387986	AT1G07710.1 CDS AT1G07710 ID=AT1G07710.1; Parent=AT1G07710; Name=AT1G07710.1; Note=Ankyrin repeat family protein; conf_class=2; computational_description=Ankyrin repeat family protein%3B CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683)%2C Ankyrin repeat (InterPro:IPR002110)%3B BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT5G60070.1)%3B Has 71061 Blast hits to 30444 proteins in 1217 species: Archae - 72%3B Bacteria - 7320%3B Metazoa - 31750%3B Fungi - 7301%3B Plants - 5738%3B Viruses - 586%3B Other Eukaryotes - 18294 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2026489; locus_type=protein_coding
AT1G07710.2	chr1:002386275	0.0	C/2386275-2387563,2387644-2387986	AT1G07710.2 CDS AT1G07710 ID=AT1G07710.2; Parent=AT1G07710; Name=AT1G07710.2; Note=Ankyrin repeat family protein; Dbxref=locus:2026489; computational_description=Ankyrin repeat family protein%3B CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683)%2C Ankyrin repeat (InterPro:IPR002110)%3B BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT5G60070.1)%3B Has 71061 Blast hits to 30444 proteins in 1217 species: Archae - 72%3B Bacteria - 7320%3B Metazoa - 31750%3B Fungi - 7301%3B Plants - 5738%3B Viruses - 586%3B Other Eukaryotes - 18294 (source: NCBI BLink).; locus_type=protein_coding
AT1G07720.1	chr1:002390970	0.0	C/2390970-2392406	AT1G07720.1 CDS AT1G07720 ID=AT1G07720.1; Parent=AT1G07720; Name=AT1G07720.1; Note=3-ketoacyl-CoA synthase 3; curator_summary=Encodes KCS3%2C a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).; conf_class=1; symbol=KCS3; full_name=3-ketoacyl-CoA synthase 3; computational_description=3-ketoacyl-CoA synthase 3 (KCS3)%3B FUNCTIONS IN: transferase activity%2C transferring acyl groups other than amino-acyl groups%2C catalytic activity%2C acyltransferase activity%3B INVOLVED IN: response to cold%2C response to light stimulus%2C response to osmotic stress%3B LOCATED IN: endoplasmic reticulum%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039)%2C Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392)%2C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747)%2C FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601)%2C Thiolase-like%2C subgroup (InterPro:IPR016038)%3B BEST Arabidopsis thaliana protein match is: 3-ketoacyl-CoA synthase 12 (TAIR:AT2G28630.1)%3B Has 2897 Blast hits to 2863 proteins in 795 species: Archae - 0%3B Bacteria - 1421%3B Metazoa - 0%3B Fungi - 2%3B Plants - 1311%3B Viruses - 0%3B Other Eukaryotes - 163 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12535340, PMID:15037448, PMID:15047901, PMID:15914083, PMID:16299169, PMID:16805732, PMID:18326828, PMID:18465198, PMID:18552355, PMID:18805951, PMID:23505340, locus:2026600; locus_type=protein_coding
AT1G07720.2	chr1:002390970	0.0	C/2390970-2392535	AT1G07720.2 CDS AT1G07720 ID=AT1G07720.2; Parent=AT1G07720; Name=AT1G07720.2; Note=3-ketoacyl-CoA synthase 3; symbol=KCS3; full_name=3-ketoacyl-CoA synthase 3; curator_summary=Encodes KCS3%2C a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).; computational_description=3-ketoacyl-CoA synthase 3 (KCS3)%3B FUNCTIONS IN: transferase activity%2C transferring acyl groups other than amino-acyl groups%2C catalytic activity%2C acyltransferase activity%3B INVOLVED IN: response to cold%2C response to light stimulus%2C response to osmotic stress%3B LOCATED IN: endoplasmic reticulum%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039)%2C Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392)%2C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747)%2C FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601)%2C Thiolase-like%2C subgroup (InterPro:IPR016038)%3B BEST Arabidopsis thaliana protein match is: 3-ketoacyl-CoA synthase 12 (TAIR:AT2G28630.1)%3B Has 2897 Blast hits to 2863 proteins in 795 species: Archae - 0%3B Bacteria - 1421%3B Metazoa - 0%3B Fungi - 2%3B Plants - 1311%3B Viruses - 0%3B Other Eukaryotes - 163 (source: NCBI BLink).; Dbxref=PMID:12535340, PMID:15037448, PMID:15047901, PMID:15914083, PMID:16299169, PMID:16805732, PMID:18326828, PMID:18465198, PMID:18552355, PMID:18805951, PMID:23505340, locus:2026600; locus_type=protein_coding
AT1G04623.1	chr1:002394236	0.0	C/2394236-2394474	AT1G04623.1 lnc_RNA AT1G04623 ID=AT1G04623.1; Parent=AT1G04623; Name=AT1G04623.1; locus_type=long_noncoding_rna
AT1G07728.1	chr1:002394985	0.0	W/2394985-2397399	AT1G07728.1 antisense_lncRNA AT1G07728 ID=AT1G07728.1; Parent=AT1G07728; curator_summary=Potential natural antisense gene%2C locus overlaps with AT1G07725; Dbxref=locus:4010713420; Name=AT1G07728.1; description=Natural antisense transcript overlaps with AT1G07725; Note=Natural antisense transcript overlaps with AT1G07725; locus_type=antisense_long_noncoding_rna
AT1G07728.2	chr1:002394985	0.0	W/2394985-2397399	AT1G07728.2 antisense_lncRNA AT1G07728 ID=AT1G07728.2; Parent=AT1G07728; curator_summary=Potential natural antisense gene%2C locus overlaps with AT1G07725; Dbxref=locus:4010713420; Name=AT1G07728.2; description=Natural antisense transcript overlaps with AT1G07725; Note=Natural antisense transcript overlaps with AT1G07725; locus_type=antisense_long_noncoding_rna
AT1G07725.1	chr1:002395249	0.0	C/2395249-2397096	AT1G07725.1 CDS AT1G07725 ID=AT1G07725.1; Parent=AT1G07725; Name=AT1G07725.1; Note=exocyst subunit exo70 family protein H6; curator_summary=A member of EXO70 gene family%2C putative exocyst subunits%2C conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes%2C which can be classified into eight clusters on the phylogenetic tree.; conf_class=1; symbol=EXO70H6; Alias=ATEXO70H6, exocyst subunit exo70 family protein H6; full_name=exocyst subunit exo70 family protein H6; computational_description=exocyst subunit exo70 family protein H6 (EXO70H6)%3B INVOLVED IN: exocytosis%2C vesicle docking involved in exocytosis%3B LOCATED IN: exocyst%3B CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140)%3B BEST Arabidopsis thaliana protein match is: exocyst subunit exo70 family protein H5 (TAIR:AT2G28640.1)%3B Has 846 Blast hits to 838 proteins in 99 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 137%3B Fungi - 47%3B Plants - 645%3B Viruses - 0%3B Other Eukaryotes - 17 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16942608, PMID:20943851, locus:504956262; locus_type=protein_coding
AT1G07730.2	chr1:002397527	0.0	C/2397527-2398696	AT1G07730.2 CDS AT1G07730 ID=AT1G07730.2; Parent=AT1G07730; Name=AT1G07730.2; Note=Disease resistance-responsive (dirigent-like protein) family protein; conf_class=1; computational_description=Disease resistance-responsive (dirigent-like protein) family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: Plant disease resistance response protein (InterPro:IPR004265)%3B BEST Arabidopsis thaliana protein match is: Disease resistance-responsive (dirigent-like protein) family protein (TAIR:AT2G28670.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:17590394, locus:1006589878; locus_type=protein_coding
AT1G07740.1	chr1:002399117	0.0	C/2399117-2400496	AT1G07740.1 CDS AT1G07740 ID=AT1G07740.1; Parent=AT1G07740; Name=AT1G07740.1; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; conf_class=1; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 10 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR-like) superfamily protein (TAIR:AT5G16420.1)%3B Has 40211 Blast hits to 12438 proteins in 276 species: Archae - 2%3B Bacteria - 44%3B Metazoa - 539%3B Fungi - 492%3B Plants - 37971%3B Viruses - 0%3B Other Eukaryotes - 1163 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:2026560; locus_type=protein_coding
AT1G07745.1	chr1:002400797	0.0	C/2400797-2400853,2400948-2401103,2401188-2401258,2401356-2401446,2401544-2401636,2401737-2401871,2402081-2402278,2402379-2402458,2402755-2402842	AT1G07745.1 CDS AT1G07745 ID=AT1G07745.1; Parent=AT1G07745; Name=AT1G07745.1; Note=DNA repair RAD51-like protein; curator_summary=Is a suppressor of SNI1. Encodes a member of the RecA/RAD51 family of DNA recombination and repair proteins. Both RAD51 and SNI1 have a dual role in pathogen-related gene transcription and somatic homologous recombination.; conf_class=2; symbol=RAD51D; Alias=ATRAD51D, SSN1, SUPPRESOR OF SNI1; full_name=homolog of RAD51 D; computational_description=homolog of RAD51 D (RAD51D)%3B FUNCTIONS IN: DNA-dependent ATPase activity%2C DNA binding%2C ATP binding%3B INVOLVED IN: DNA repair%2C somatic cell DNA recombination%2C regulation of response to biotic stimulus%3B EXPRESSED IN: sperm cell%2C male gametophyte%2C flower%3B EXPRESSED DURING: petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: DNA recombination/repair protein RecA/RadB%2C ATP-binding domain (InterPro:IPR020588)%2C DNA recombination and repair protein Rad51%2C C-terminal (InterPro:IPR013632)%3B BEST Arabidopsis thaliana protein match is: DNA repair (Rad51) family protein (TAIR:AT2G28560.1)%3B Has 4147 Blast hits to 4147 proteins in 1269 species: Archae - 448%3B Bacteria - 1641%3B Metazoa - 721%3B Fungi - 410%3B Plants - 391%3B Viruses - 2%3B Other Eukaryotes - 534 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15686518, PMID:17360504, PMID:19696887, PMID:21320694, PMID:23521529, PMID:24102485, PMID:24278037, locus:2825233; locus_type=protein_coding
AT1G07745.2	chr1:002400797	0.0	C/2400797-2400853,2400948-2401103,2401188-2401258,2401356-2401446,2401544-2401636,2401737-2401871,2402081-2402278,2402379-2402492	AT1G07745.2 CDS AT1G07745 ID=AT1G07745.2; Parent=AT1G07745; Name=AT1G07745.2; Note=DNA repair RAD51-like protein; curator_summary=Is a suppressor of SNI1. Encodes a member of the RecA/RAD51 family of DNA recombination and repair proteins. Both RAD51 and SNI1 have a dual role in pathogen-related gene transcription and somatic homologous recombination.; conf_class=3; symbol=RAD51D; Alias=ATRAD51D, SSN1, SUPPRESOR OF SNI1; full_name=homolog of RAD51 D; computational_description=homolog of RAD51 D (RAD51D)%3B FUNCTIONS IN: DNA-dependent ATPase activity%2C DNA binding%2C ATP binding%3B INVOLVED IN: DNA repair%2C somatic cell DNA recombination%2C regulation of response to biotic stimulus%3B EXPRESSED IN: sperm cell%2C male gametophyte%2C flower%3B EXPRESSED DURING: petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: DNA recombination/repair protein RecA/RadB%2C ATP-binding domain (InterPro:IPR020588)%2C DNA recombination and repair protein Rad51%2C C-terminal (InterPro:IPR013632)%3B BEST Arabidopsis thaliana protein match is: DNA repair (Rad51) family protein (TAIR:AT2G28560.1)%3B Has 4147 Blast hits to 4147 proteins in 1269 species: Archae - 448%3B Bacteria - 1641%3B Metazoa - 721%3B Fungi - 410%3B Plants - 391%3B Viruses - 2%3B Other Eukaryotes - 534 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15686518, PMID:17360504, PMID:19696887, PMID:21320694, PMID:23521529, PMID:24102485, PMID:24278037, locus:2825233; locus_type=protein_coding
AT1G07745.3	chr1:002401257	0.0	C/2401257-2401258,2401344-2401446,2401544-2401636,2401737-2401871,2402081-2402278,2402379-2402492	AT1G07745.3 CDS AT1G07745 ID=AT1G07745.3; Parent=AT1G07745; Name=AT1G07745.3; Note=DNA repair RAD51-like protein; symbol=RAD51D; Alias=ATRAD51D, SSN1, SUPPRESOR OF SNI1; full_name=homolog of RAD51 D; curator_summary=Is a suppressor of SNI1. Encodes a member of the RecA/RAD51 family of DNA recombination and repair proteins. Both RAD51 and SNI1 have a dual role in pathogen-related gene transcription and somatic homologous recombination.; computational_description=homolog of RAD51 D (RAD51D)%3B FUNCTIONS IN: DNA-dependent ATPase activity%2C DNA binding%2C ATP binding%3B INVOLVED IN: DNA repair%2C somatic cell DNA recombination%2C regulation of response to biotic stimulus%3B EXPRESSED IN: sperm cell%2C male gametophyte%2C flower%3B EXPRESSED DURING: petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: DNA recombination/repair protein RecA/RadB%2C ATP-binding domain (InterPro:IPR020588)%2C DNA recombination and repair protein Rad51%2C C-terminal (InterPro:IPR013632)%3B BEST Arabidopsis thaliana protein match is: DNA repair (Rad51) family protein (TAIR:AT2G28560.1)%3B Has 4147 Blast hits to 4147 proteins in 1269 species: Archae - 448%3B Bacteria - 1641%3B Metazoa - 721%3B Fungi - 410%3B Plants - 391%3B Viruses - 2%3B Other Eukaryotes - 534 (source: NCBI BLink).; Dbxref=PMID:15686518, PMID:17360504, PMID:19696887, PMID:21320694, PMID:23521529, PMID:24102485, PMID:24278037, locus:2825233; locus_type=protein_coding
AT1G07745.4	chr1:002401257	0.0	C/2401257-2401258,2401344-2401446,2401544-2401636,2401737-2401871,2402081-2402278,2402379-2402458,2402755-2402842	AT1G07745.4 CDS AT1G07745 ID=AT1G07745.4; Parent=AT1G07745; Name=AT1G07745.4; Note=DNA repair RAD51-like protein; symbol=RAD51D; Alias=ATRAD51D, SSN1, SUPPRESOR OF SNI1; full_name=homolog of RAD51 D; curator_summary=Is a suppressor of SNI1. Encodes a member of the RecA/RAD51 family of DNA recombination and repair proteins. Both RAD51 and SNI1 have a dual role in pathogen-related gene transcription and somatic homologous recombination.; computational_description=homolog of RAD51 D (RAD51D)%3B FUNCTIONS IN: DNA-dependent ATPase activity%2C DNA binding%2C ATP binding%3B INVOLVED IN: DNA repair%2C somatic cell DNA recombination%2C regulation of response to biotic stimulus%3B EXPRESSED IN: sperm cell%2C male gametophyte%2C flower%3B EXPRESSED DURING: petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: DNA recombination/repair protein RecA/RadB%2C ATP-binding domain (InterPro:IPR020588)%2C DNA recombination and repair protein Rad51%2C C-terminal (InterPro:IPR013632)%3B BEST Arabidopsis thaliana protein match is: DNA repair (Rad51) family protein (TAIR:AT2G28560.1)%3B Has 4147 Blast hits to 4147 proteins in 1269 species: Archae - 448%3B Bacteria - 1641%3B Metazoa - 721%3B Fungi - 410%3B Plants - 391%3B Viruses - 2%3B Other Eukaryotes - 534 (source: NCBI BLink).; Dbxref=PMID:15686518, PMID:17360504, PMID:19696887, PMID:21320694, PMID:23521529, PMID:24102485, PMID:24278037, locus:2825233; locus_type=protein_coding
AT1G07745.5	chr1:002401257	0.0	C/2401257-2401258,2401344-2401446,2401544-2401636,2401737-2401871,2402081-2402278,2402379-2402458,2402755-2402842	AT1G07745.5 CDS AT1G07745 ID=AT1G07745.5; Parent=AT1G07745; Name=AT1G07745.5; Note=DNA repair RAD51-like protein; symbol=RAD51D; Alias=ATRAD51D, SSN1, SUPPRESOR OF SNI1; full_name=homolog of RAD51 D; curator_summary=Is a suppressor of SNI1. Encodes a member of the RecA/RAD51 family of DNA recombination and repair proteins. Both RAD51 and SNI1 have a dual role in pathogen-related gene transcription and somatic homologous recombination.; computational_description=homolog of RAD51 D (RAD51D)%3B FUNCTIONS IN: DNA-dependent ATPase activity%2C DNA binding%2C ATP binding%3B INVOLVED IN: DNA repair%2C somatic cell DNA recombination%2C regulation of response to biotic stimulus%3B EXPRESSED IN: sperm cell%2C male gametophyte%2C flower%3B EXPRESSED DURING: petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: DNA recombination/repair protein RecA/RadB%2C ATP-binding domain (InterPro:IPR020588)%2C DNA recombination and repair protein Rad51%2C C-terminal (InterPro:IPR013632)%3B BEST Arabidopsis thaliana protein match is: DNA repair (Rad51) family protein (TAIR:AT2G28560.1)%3B Has 4147 Blast hits to 4147 proteins in 1269 species: Archae - 448%3B Bacteria - 1641%3B Metazoa - 721%3B Fungi - 410%3B Plants - 391%3B Viruses - 2%3B Other Eukaryotes - 534 (source: NCBI BLink).; Dbxref=PMID:15686518, PMID:17360504, PMID:19696887, PMID:21320694, PMID:23521529, PMID:24102485, PMID:24278037, locus:2825233; locus_type=protein_coding
AT1G07747.1	chr1:002403558	0.0	W/2403558-2403845	AT1G07747.1 CDS AT1G07747 ID=AT1G07747.1; Parent=AT1G07747; Name=AT1G07747.1; Note=Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; curator_summary=Encodes a Protease inhibitor/seed storage/LTP family protein; conf_class=4; computational_description=Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein%3B INVOLVED IN: lipid transport%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140)%2C Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612)%2C Plant lipid transfer protein/hydrophobic protein%2C helical domain (InterPro:IPR013770)%3B BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT1G43667.1)%3B Has 285 Blast hits to 284 proteins in 30 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 285%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=***; Dbxref=locus:4010713421; locus_type=protein_coding
AT1G07750.1	chr1:002404300	0.0	C/2404300-2404453,2404542-2405262,2405668-2405863	AT1G07750.1 CDS AT1G07750 ID=AT1G07750.1; Parent=AT1G07750; Name=AT1G07750.1; Note=RmlC-like cupins superfamily protein; conf_class=2; computational_description=RmlC-like cupins superfamily protein%3B FUNCTIONS IN: copper ion binding%2C zinc ion binding%2C nutrient reservoir activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Cupin%2C RmlC-type (InterPro:IPR011051)%2C Cupin 1 (InterPro:IPR006045)%2C RmlC-like jelly roll fold (InterPro:IPR014710)%2C 11-S seed storage protein%2C plant (InterPro:IPR006044)%3B BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT2G28680.1)%3B Has 920 Blast hits to 832 proteins in 102 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 3%3B Fungi - 0%3B Plants - 914%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12777046, PMID:16055689, PMID:16247729, PMID:16242667, PMID:18650403, PMID:20018591, PMID:20118269, locus:2026545; locus_type=protein_coding
AT1G07760.1	chr1:002406834	0.0	C/2406834-2406905	AT1G07760.1 tRNA AT1G07760 ID=AT1G07760.1; Parent=AT1G07760; Note=tRNA-His; computational_description=tRNA-His (anticodon: GTG); Dbxref=PMID:8980477, PMID:23066098, PMID:8980477, locus:3689374; Name=AT1G07760.1; locus_type=pre_trna
AT1G07770.1	chr1:002408413	0.0	C/2408413-2408511,2408681-2408841,2408933-2409065	AT1G07770.1 CDS AT1G07770 ID=AT1G07770.1; Parent=AT1G07770; Name=AT1G07770.1; Note=ribosomal protein S15A; curator_summary=Encodes cytoplasmic ribosomal protein S15a.; conf_class=2; symbol=RPS15A; full_name=ribosomal protein S15A; computational_description=ribosomal protein S15A (RPS15A)%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%3B LOCATED IN: cytosolic small ribosomal subunit%2C cytosolic ribosome%2C cell wall%2C plasma membrane%2C membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein S8 (InterPro:IPR000630)%3B BEST Arabidopsis thaliana protein match is: Ribosomal protein S8 family protein (TAIR:AT5G59850.1)%3B Has 3677 Blast hits to 3677 proteins in 1417 species: Archae - 277%3B Bacteria - 1997%3B Metazoa - 434%3B Fungi - 223%3B Plants - 257%3B Viruses - 0%3B Other Eukaryotes - 489 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:7972526, PMID:11598216, PMID:11971146, PMID:12692332, PMID:12893775, PMID:15734919, PMID:15821981, PMID:16247729, PMID:18650403, PMID:22195043, locus:2026525; locus_type=protein_coding
AT1G07770.2	chr1:002408413	0.0	C/2408413-2408511,2408681-2408841,2408933-2409065	AT1G07770.2 CDS AT1G07770 ID=AT1G07770.2; Parent=AT1G07770; Name=AT1G07770.2; Note=ribosomal protein S15A; curator_summary=Encodes cytoplasmic ribosomal protein S15a.; conf_class=2; symbol=RPS15A; full_name=ribosomal protein S15A; computational_description=ribosomal protein S15A (RPS15A)%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%3B LOCATED IN: cytosolic small ribosomal subunit%2C cytosolic ribosome%2C cell wall%2C plasma membrane%2C membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein S8 (InterPro:IPR000630)%3B BEST Arabidopsis thaliana protein match is: Ribosomal protein S8 family protein (TAIR:AT5G59850.1)%3B Has 3677 Blast hits to 3677 proteins in 1417 species: Archae - 277%3B Bacteria - 1997%3B Metazoa - 434%3B Fungi - 223%3B Plants - 257%3B Viruses - 0%3B Other Eukaryotes - 489 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:7972526, PMID:11598216, PMID:11971146, PMID:12692332, PMID:12893775, PMID:15734919, PMID:15821981, PMID:16247729, PMID:18650403, PMID:22195043, locus:2026525; locus_type=protein_coding
AT1G07770.3	chr1:002408413	0.0	C/2408413-2408511,2408681-2408841,2408933-2409065	AT1G07770.3 CDS AT1G07770 ID=AT1G07770.3; Parent=AT1G07770; Name=AT1G07770.3; Note=ribosomal protein S15A; symbol=RPS15A; full_name=ribosomal protein S15A; Dbxref=PMID:7972526, PMID:11598216, PMID:11971146, PMID:12692332, PMID:12893775, PMID:15734919, PMID:15821981, PMID:16247729, PMID:18650403, PMID:22195043, locus:2026525; curator_summary=Encodes cytoplasmic ribosomal protein S15a.; computational_description=ribosomal protein S15A (RPS15A)%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%3B LOCATED IN: cytosolic small ribosomal subunit%2C cytosolic ribosome%2C cell wall%2C plasma membrane%2C membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein S8 (InterPro:IPR000630)%3B BEST Arabidopsis thaliana protein match is: Ribosomal protein S8 family protein (TAIR:AT5G59850.1)%3B Has 3677 Blast hits to 3677 proteins in 1417 species: Archae - 277%3B Bacteria - 1997%3B Metazoa - 434%3B Fungi - 223%3B Plants - 257%3B Viruses - 0%3B Other Eukaryotes - 489 (source: NCBI BLink).; locus_type=protein_coding
AT1G07780.10	chr1:002410352	0.0	C/2410352-2410577,2410733-2410896,2410987-2411351,2411479-2411541,2411824-2411833	AT1G07780.10 CDS AT1G07780 ID=AT1G07780.10; Parent=AT1G07780; Name=AT1G07780.10; Note=phosphoribosylanthranilate isomerase 1; symbol=PAI1; Alias=TRP6, TRANSIENT RECEPTOR POTENTIAL 6; full_name=phosphoribosylanthranilate isomerase 1; Dbxref=PMID:10471722, PMID:8521489, PMID:7773017, PMID:7890741, PMID:11346937, PMID:12893775, locus:2026509; curator_summary=Encodes phosphoribosylanthranilate isomerase which catalyzes the third step of the tryptophan biosynthetic pathway. Member of gene family.; computational_description=phosphoribosylanthranilate isomerase 1 (PAI1)%3B CONTAINS InterPro DOMAIN/s: N-(5%26apos%3Bphosphoribosyl)anthranilate isomerase (PRAI) (InterPro:IPR001240)%2C Aldolase-type TIM barrel (InterPro:IPR013785)%2C Ribulose-phosphate binding barrel (InterPro:IPR011060)%3B BEST Arabidopsis thaliana protein match is: phosphoribosylanthranilate isomerase 2 (TAIR:AT5G05590.1)%3B Has 5472 Blast hits to 5471 proteins in 2119 species: Archae - 168%3B Bacteria - 3853%3B Metazoa - 4%3B Fungi - 235%3B Plants - 77%3B Viruses - 0%3B Other Eukaryotes - 1135 (source: NCBI BLink).; locus_type=protein_coding
AT1G07780.12	chr1:002410352	0.0	C/2410352-2410577,2410733-2410896,2410987-2411351,2411479-2411541,2411824-2411833	AT1G07780.12 CDS AT1G07780 ID=AT1G07780.12; Parent=AT1G07780; Name=AT1G07780.12; Note=phosphoribosylanthranilate isomerase 1; symbol=PAI1; Alias=TRP6, TRANSIENT RECEPTOR POTENTIAL 6; full_name=phosphoribosylanthranilate isomerase 1; Dbxref=PMID:10471722, PMID:8521489, PMID:7773017, PMID:7890741, PMID:11346937, PMID:12893775, locus:2026509; curator_summary=Encodes phosphoribosylanthranilate isomerase which catalyzes the third step of the tryptophan biosynthetic pathway. Member of gene family.; computational_description=phosphoribosylanthranilate isomerase 1 (PAI1)%3B CONTAINS InterPro DOMAIN/s: N-(5%26apos%3Bphosphoribosyl)anthranilate isomerase (PRAI) (InterPro:IPR001240)%2C Aldolase-type TIM barrel (InterPro:IPR013785)%2C Ribulose-phosphate binding barrel (InterPro:IPR011060)%3B BEST Arabidopsis thaliana protein match is: phosphoribosylanthranilate isomerase 2 (TAIR:AT5G05590.1)%3B Has 5472 Blast hits to 5471 proteins in 2119 species: Archae - 168%3B Bacteria - 3853%3B Metazoa - 4%3B Fungi - 235%3B Plants - 77%3B Viruses - 0%3B Other Eukaryotes - 1135 (source: NCBI BLink).; locus_type=protein_coding
AT1G07780.13	chr1:002410352	0.0	C/2410352-2410577,2410733-2410896,2410987-2411351,2411479-2411541,2411824-2411833	AT1G07780.13 CDS AT1G07780 ID=AT1G07780.13; Parent=AT1G07780; Name=AT1G07780.13; Note=phosphoribosylanthranilate isomerase 1; symbol=PAI1; Alias=TRP6, TRANSIENT RECEPTOR POTENTIAL 6; full_name=phosphoribosylanthranilate isomerase 1; Dbxref=PMID:10471722, PMID:8521489, PMID:7773017, PMID:7890741, PMID:11346937, PMID:12893775, locus:2026509; curator_summary=Encodes phosphoribosylanthranilate isomerase which catalyzes the third step of the tryptophan biosynthetic pathway. Member of gene family.; computational_description=phosphoribosylanthranilate isomerase 1 (PAI1)%3B CONTAINS InterPro DOMAIN/s: N-(5%26apos%3Bphosphoribosyl)anthranilate isomerase (PRAI) (InterPro:IPR001240)%2C Aldolase-type TIM barrel (InterPro:IPR013785)%2C Ribulose-phosphate binding barrel (InterPro:IPR011060)%3B BEST Arabidopsis thaliana protein match is: phosphoribosylanthranilate isomerase 2 (TAIR:AT5G05590.1)%3B Has 5472 Blast hits to 5471 proteins in 2119 species: Archae - 168%3B Bacteria - 3853%3B Metazoa - 4%3B Fungi - 235%3B Plants - 77%3B Viruses - 0%3B Other Eukaryotes - 1135 (source: NCBI BLink).; locus_type=protein_coding
AT1G07780.1	chr1:002410352	0.0	C/2410352-2410577,2410733-2410896,2410987-2411351,2411479-2411541,2411824-2411833	AT1G07780.1 CDS AT1G07780 ID=AT1G07780.1; Parent=AT1G07780; Name=AT1G07780.1; Note=phosphoribosylanthranilate isomerase 1; curator_summary=Encodes phosphoribosylanthranilate isomerase which catalyzes the third step of the tryptophan biosynthetic pathway. Member of gene family.; conf_class=2; symbol=PAI1; Alias=TRP6, TRANSIENT RECEPTOR POTENTIAL 6; full_name=phosphoribosylanthranilate isomerase 1; computational_description=phosphoribosylanthranilate isomerase 1 (PAI1)%3B CONTAINS InterPro DOMAIN/s: N-(5%26apos%3Bphosphoribosyl)anthranilate isomerase (PRAI) (InterPro:IPR001240)%2C Aldolase-type TIM barrel (InterPro:IPR013785)%2C Ribulose-phosphate binding barrel (InterPro:IPR011060)%3B BEST Arabidopsis thaliana protein match is: phosphoribosylanthranilate isomerase 2 (TAIR:AT5G05590.1)%3B Has 5472 Blast hits to 5471 proteins in 2119 species: Archae - 168%3B Bacteria - 3853%3B Metazoa - 4%3B Fungi - 235%3B Plants - 77%3B Viruses - 0%3B Other Eukaryotes - 1135 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10471722, PMID:8521489, PMID:7773017, PMID:7890741, PMID:11346937, PMID:12893775, locus:2026509; locus_type=protein_coding
AT1G07780.2	chr1:002410352	0.0	C/2410352-2410577,2410733-2410896,2410987-2411351,2411479-2411541,2411824-2411833	AT1G07780.2 CDS AT1G07780 ID=AT1G07780.2; Parent=AT1G07780; Name=AT1G07780.2; Note=phosphoribosylanthranilate isomerase 1; curator_summary=Encodes phosphoribosylanthranilate isomerase which catalyzes the third step of the tryptophan biosynthetic pathway. Member of gene family.; conf_class=2; symbol=PAI1; Alias=TRP6, TRANSIENT RECEPTOR POTENTIAL 6; full_name=phosphoribosylanthranilate isomerase 1; computational_description=phosphoribosylanthranilate isomerase 1 (PAI1)%3B CONTAINS InterPro DOMAIN/s: N-(5%26apos%3Bphosphoribosyl)anthranilate isomerase (PRAI) (InterPro:IPR001240)%2C Aldolase-type TIM barrel (InterPro:IPR013785)%2C Ribulose-phosphate binding barrel (InterPro:IPR011060)%3B BEST Arabidopsis thaliana protein match is: phosphoribosylanthranilate isomerase 2 (TAIR:AT5G05590.1)%3B Has 5472 Blast hits to 5471 proteins in 2119 species: Archae - 168%3B Bacteria - 3853%3B Metazoa - 4%3B Fungi - 235%3B Plants - 77%3B Viruses - 0%3B Other Eukaryotes - 1135 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10471722, PMID:8521489, PMID:7773017, PMID:7890741, PMID:11346937, PMID:12893775, locus:2026509; locus_type=protein_coding
AT1G07780.3	chr1:002410352	0.0	C/2410352-2410577,2410733-2410896,2410987-2411351,2411479-2411541,2411824-2411833	AT1G07780.3 CDS AT1G07780 ID=AT1G07780.3; Parent=AT1G07780; Name=AT1G07780.3; Note=phosphoribosylanthranilate isomerase 1; curator_summary=Encodes phosphoribosylanthranilate isomerase which catalyzes the third step of the tryptophan biosynthetic pathway. Member of gene family.; conf_class=2; symbol=PAI1; Alias=TRP6, TRANSIENT RECEPTOR POTENTIAL 6; full_name=phosphoribosylanthranilate isomerase 1; computational_description=phosphoribosylanthranilate isomerase 1 (PAI1)%3B CONTAINS InterPro DOMAIN/s: N-(5%26apos%3Bphosphoribosyl)anthranilate isomerase (PRAI) (InterPro:IPR001240)%2C Aldolase-type TIM barrel (InterPro:IPR013785)%2C Ribulose-phosphate binding barrel (InterPro:IPR011060)%3B BEST Arabidopsis thaliana protein match is: phosphoribosylanthranilate isomerase 2 (TAIR:AT5G05590.1)%3B Has 5472 Blast hits to 5471 proteins in 2119 species: Archae - 168%3B Bacteria - 3853%3B Metazoa - 4%3B Fungi - 235%3B Plants - 77%3B Viruses - 0%3B Other Eukaryotes - 1135 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10471722, PMID:8521489, PMID:7773017, PMID:7890741, PMID:11346937, PMID:12893775, locus:2026509; locus_type=protein_coding
AT1G07780.5	chr1:002410352	0.0	C/2410352-2410577,2410733-2410896,2410987-2411351,2411479-2411541,2411824-2411833	AT1G07780.5 CDS AT1G07780 ID=AT1G07780.5; Parent=AT1G07780; Name=AT1G07780.5; Note=phosphoribosylanthranilate isomerase 1; curator_summary=Encodes phosphoribosylanthranilate isomerase which catalyzes the third step of the tryptophan biosynthetic pathway. Member of gene family.; conf_class=4; symbol=PAI1; Alias=TRP6, TRANSIENT RECEPTOR POTENTIAL 6; full_name=phosphoribosylanthranilate isomerase 1; computational_description=phosphoribosylanthranilate isomerase 1 (PAI1)%3B CONTAINS InterPro DOMAIN/s: N-(5%26apos%3Bphosphoribosyl)anthranilate isomerase (PRAI) (InterPro:IPR001240)%2C Aldolase-type TIM barrel (InterPro:IPR013785)%2C Ribulose-phosphate binding barrel (InterPro:IPR011060)%3B BEST Arabidopsis thaliana protein match is: phosphoribosylanthranilate isomerase 2 (TAIR:AT5G05590.1)%3B Has 5472 Blast hits to 5471 proteins in 2119 species: Archae - 168%3B Bacteria - 3853%3B Metazoa - 4%3B Fungi - 235%3B Plants - 77%3B Viruses - 0%3B Other Eukaryotes - 1135 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:10471722, PMID:8521489, PMID:7773017, PMID:7890741, PMID:11346937, PMID:12893775, locus:2026509; locus_type=protein_coding
AT1G07780.7	chr1:002410352	0.0	C/2410352-2410577,2410733-2410896,2410987-2411217	AT1G07780.7 CDS AT1G07780 ID=AT1G07780.7; Parent=AT1G07780; Name=AT1G07780.7; Note=phosphoribosylanthranilate isomerase 1; symbol=PAI1; Alias=TRP6, TRANSIENT RECEPTOR POTENTIAL 6; full_name=phosphoribosylanthranilate isomerase 1; curator_summary=Encodes phosphoribosylanthranilate isomerase which catalyzes the third step of the tryptophan biosynthetic pathway. Member of gene family.; computational_description=phosphoribosylanthranilate isomerase 1 (PAI1)%3B CONTAINS InterPro DOMAIN/s: N-(5%26apos%3Bphosphoribosyl)anthranilate isomerase (PRAI) (InterPro:IPR001240)%2C Aldolase-type TIM barrel (InterPro:IPR013785)%2C Ribulose-phosphate binding barrel (InterPro:IPR011060)%3B BEST Arabidopsis thaliana protein match is: phosphoribosylanthranilate isomerase 2 (TAIR:AT5G05590.1)%3B Has 5472 Blast hits to 5471 proteins in 2119 species: Archae - 168%3B Bacteria - 3853%3B Metazoa - 4%3B Fungi - 235%3B Plants - 77%3B Viruses - 0%3B Other Eukaryotes - 1135 (source: NCBI BLink).; Dbxref=PMID:10471722, PMID:8521489, PMID:7773017, PMID:7890741, PMID:11346937, PMID:12893775, locus:2026509; locus_type=protein_coding
AT1G07780.9	chr1:002410352	0.0	C/2410352-2410577,2410733-2410896,2410987-2411351,2411479-2411541,2411824-2411833	AT1G07780.9 CDS AT1G07780 ID=AT1G07780.9; Parent=AT1G07780; Name=AT1G07780.9; Note=phosphoribosylanthranilate isomerase 1; symbol=PAI1; Alias=TRP6, TRANSIENT RECEPTOR POTENTIAL 6; full_name=phosphoribosylanthranilate isomerase 1; Dbxref=PMID:10471722, PMID:8521489, PMID:7773017, PMID:7890741, PMID:11346937, PMID:12893775, locus:2026509; curator_summary=Encodes phosphoribosylanthranilate isomerase which catalyzes the third step of the tryptophan biosynthetic pathway. Member of gene family.; computational_description=phosphoribosylanthranilate isomerase 1 (PAI1)%3B CONTAINS InterPro DOMAIN/s: N-(5%26apos%3Bphosphoribosyl)anthranilate isomerase (PRAI) (InterPro:IPR001240)%2C Aldolase-type TIM barrel (InterPro:IPR013785)%2C Ribulose-phosphate binding barrel (InterPro:IPR011060)%3B BEST Arabidopsis thaliana protein match is: phosphoribosylanthranilate isomerase 2 (TAIR:AT5G05590.1)%3B Has 5472 Blast hits to 5471 proteins in 2119 species: Archae - 168%3B Bacteria - 3853%3B Metazoa - 4%3B Fungi - 235%3B Plants - 77%3B Viruses - 0%3B Other Eukaryotes - 1135 (source: NCBI BLink).; locus_type=protein_coding
AT1G07780.11	chr1:002410563	0.0	C/2410563-2410602,2410733-2410896,2410987-2411351,2411479-2411541,2411824-2411833	AT1G07780.11 CDS AT1G07780 ID=AT1G07780.11; Parent=AT1G07780; Name=AT1G07780.11; Note=phosphoribosylanthranilate isomerase 1; symbol=PAI1; Alias=TRP6, TRANSIENT RECEPTOR POTENTIAL 6; full_name=phosphoribosylanthranilate isomerase 1; Dbxref=PMID:10471722, PMID:8521489, PMID:7773017, PMID:7890741, PMID:11346937, PMID:12893775, locus:2026509; curator_summary=Encodes phosphoribosylanthranilate isomerase which catalyzes the third step of the tryptophan biosynthetic pathway. Member of gene family.; computational_description=phosphoribosylanthranilate isomerase 1 (PAI1)%3B CONTAINS InterPro DOMAIN/s: N-(5%26apos%3Bphosphoribosyl)anthranilate isomerase (PRAI) (InterPro:IPR001240)%2C Aldolase-type TIM barrel (InterPro:IPR013785)%2C Ribulose-phosphate binding barrel (InterPro:IPR011060)%3B BEST Arabidopsis thaliana protein match is: phosphoribosylanthranilate isomerase 2 (TAIR:AT5G05590.1)%3B Has 5472 Blast hits to 5471 proteins in 2119 species: Archae - 168%3B Bacteria - 3853%3B Metazoa - 4%3B Fungi - 235%3B Plants - 77%3B Viruses - 0%3B Other Eukaryotes - 1135 (source: NCBI BLink).; locus_type=protein_coding
AT1G07780.4	chr1:002410563	0.0	C/2410563-2410602,2410733-2410896,2410987-2411351,2411479-2411541,2411824-2411833	AT1G07780.4 CDS AT1G07780 ID=AT1G07780.4; Parent=AT1G07780; Name=AT1G07780.4; Note=phosphoribosylanthranilate isomerase 1; curator_summary=Encodes phosphoribosylanthranilate isomerase which catalyzes the third step of the tryptophan biosynthetic pathway. Member of gene family.; conf_class=6; symbol=PAI1; Alias=TRP6, TRANSIENT RECEPTOR POTENTIAL 6; full_name=phosphoribosylanthranilate isomerase 1; computational_description=phosphoribosylanthranilate isomerase 1 (PAI1)%3B CONTAINS InterPro DOMAIN/s: N-(5%26apos%3Bphosphoribosyl)anthranilate isomerase (PRAI) (InterPro:IPR001240)%2C Aldolase-type TIM barrel (InterPro:IPR013785)%2C Ribulose-phosphate binding barrel (InterPro:IPR011060)%3B BEST Arabidopsis thaliana protein match is: phosphoribosylanthranilate isomerase 2 (TAIR:AT5G05590.1)%3B Has 5472 Blast hits to 5471 proteins in 2119 species: Archae - 168%3B Bacteria - 3853%3B Metazoa - 4%3B Fungi - 235%3B Plants - 77%3B Viruses - 0%3B Other Eukaryotes - 1135 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:10471722, PMID:8521489, PMID:7773017, PMID:7890741, PMID:11346937, PMID:12893775, locus:2026509; locus_type=protein_coding
AT1G07780.6	chr1:002410657	0.0	C/2410657-2410896,2410987-2411351,2411479-2411541,2411824-2411833	AT1G07780.6 CDS AT1G07780 ID=AT1G07780.6; Parent=AT1G07780; Name=AT1G07780.6; Note=phosphoribosylanthranilate isomerase 1; symbol=PAI1; Alias=TRP6, TRANSIENT RECEPTOR POTENTIAL 6; full_name=phosphoribosylanthranilate isomerase 1; curator_summary=Encodes phosphoribosylanthranilate isomerase which catalyzes the third step of the tryptophan biosynthetic pathway. Member of gene family.; computational_description=phosphoribosylanthranilate isomerase 1 (PAI1)%3B CONTAINS InterPro DOMAIN/s: N-(5%26apos%3Bphosphoribosyl)anthranilate isomerase (PRAI) (InterPro:IPR001240)%2C Aldolase-type TIM barrel (InterPro:IPR013785)%2C Ribulose-phosphate binding barrel (InterPro:IPR011060)%3B BEST Arabidopsis thaliana protein match is: phosphoribosylanthranilate isomerase 2 (TAIR:AT5G05590.1)%3B Has 5472 Blast hits to 5471 proteins in 2119 species: Archae - 168%3B Bacteria - 3853%3B Metazoa - 4%3B Fungi - 235%3B Plants - 77%3B Viruses - 0%3B Other Eukaryotes - 1135 (source: NCBI BLink).; Dbxref=PMID:10471722, PMID:8521489, PMID:7773017, PMID:7890741, PMID:11346937, PMID:12893775, locus:2026509; locus_type=protein_coding
AT1G07780.8	chr1:002410657	0.0	C/2410657-2410896,2410987-2411351,2411479-2411541,2411824-2411833	AT1G07780.8 CDS AT1G07780 ID=AT1G07780.8; Parent=AT1G07780; Name=AT1G07780.8; Note=phosphoribosylanthranilate isomerase 1; symbol=PAI1; Alias=TRP6, TRANSIENT RECEPTOR POTENTIAL 6; full_name=phosphoribosylanthranilate isomerase 1; curator_summary=Encodes phosphoribosylanthranilate isomerase which catalyzes the third step of the tryptophan biosynthetic pathway. Member of gene family.; computational_description=phosphoribosylanthranilate isomerase 1 (PAI1)%3B CONTAINS InterPro DOMAIN/s: N-(5%26apos%3Bphosphoribosyl)anthranilate isomerase (PRAI) (InterPro:IPR001240)%2C Aldolase-type TIM barrel (InterPro:IPR013785)%2C Ribulose-phosphate binding barrel (InterPro:IPR011060)%3B BEST Arabidopsis thaliana protein match is: phosphoribosylanthranilate isomerase 2 (TAIR:AT5G05590.1)%3B Has 5472 Blast hits to 5471 proteins in 2119 species: Archae - 168%3B Bacteria - 3853%3B Metazoa - 4%3B Fungi - 235%3B Plants - 77%3B Viruses - 0%3B Other Eukaryotes - 1135 (source: NCBI BLink).; Dbxref=PMID:10471722, PMID:8521489, PMID:7773017, PMID:7890741, PMID:11346937, PMID:12893775, locus:2026509; locus_type=protein_coding
AT1G07790.1	chr1:002413049	0.0	W/2413049-2413495	AT1G07790.1 CDS AT1G07790 ID=AT1G07790.1; Parent=AT1G07790; Name=AT1G07790.1; Note=Histone superfamily protein; curator_summary=Encodes a histone 2B (H2B) protein.; conf_class=1; symbol=HTB1; computational_description=HTB1%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: nucleosome assembly%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Histone H2B (InterPro:IPR000558)%2C Histone-fold (InterPro:IPR009072)%2C Histone core (InterPro:IPR007125)%3B BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT3G45980.1)%3B Has 3418 Blast hits to 3391 proteins in 380 species: Archae - 0%3B Bacteria - 96%3B Metazoa - 2240%3B Fungi - 204%3B Plants - 476%3B Viruses - 0%3B Other Eukaryotes - 402 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16195344, PMID:16489130, PMID:17096212, PMID:18356294, PMID:18849490, PMID:20736450, locus:2026494; locus_type=protein_coding
AT1G07795.1	chr1:002414438	0.0	W/2414438-2414794	AT1G07795.1 CDS AT1G07795 ID=AT1G07795.1; Parent=AT1G07795; Name=AT1G07795.1; Note=forkhead box protein G1; conf_class=1; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G28725.1)%3B Has 38 Blast hits to 38 proteins in 11 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 38%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:22253603, locus:505006108; locus_type=protein_coding
AT1TE07880	chr1:002415020	0.0	W/2415020-2416036	AT1TE07880 transposable_element AT1TE07880 ID=AT1TE07880; Name=AT1TE07880; Alias=ATLINE1_1
AT1G07800.1	chr1:002415041	0.0	W/2415041-2415970	AT1G07800.1 CDS AT1G07800 ID=AT1G07800.1; Parent=AT1G07800; Name=AT1G07800.1; index=1; computational_description=pseudogene%2C similar to putative reverse transcriptase.%2C blastp match of 24%25 identity and 5.3e-10 P-value to GP|21450442|gb|AAM54146.1|AC104616_5|AC104616 putative reverse transcriptase. %7BOryza sativa (japonica cultivar-group)%7D; Dbxref=locus:2026590; Note=transposable_element_gene; locus_type=transposable_element_gene
AT1G07810.1	chr1:002416681	0.0	W/2416681-2418093,2418215-2418281,2418374-2418495,2418647-2418928,2419010-2419387,2419467-2419576,2419677-2419905,2419988-2420572	AT1G07810.1 CDS AT1G07810 ID=AT1G07810.1; Parent=AT1G07810; Name=AT1G07810.1; Note=ER-type Ca2+-ATPase 1; curator_summary=Encodes an ER-type Ca2+-pumping ATPase.; conf_class=2; symbol=ECA1; Alias=ACA3, ATECA1, ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 1; full_name=ER-type Ca2+-ATPase 1; computational_description=ER-type Ca2+-ATPase 1 (ECA1)%3B FUNCTIONS IN: calcium-transporting ATPase activity%3B INVOLVED IN: manganese ion transport%2C response to cadmium ion%2C cellular manganese ion homeostasis%2C calcium ion transport%2C response to manganese ion%3B LOCATED IN: endoplasmic reticulum%2C plasma membrane%2C endoplasmic reticulum membrane%3B EXPRESSED IN: guard cell%2C callus%2C cultured cell%3B CONTAINS InterPro DOMAIN/s: ATPase%2C P-type%2C ATPase-associated domain (InterPro:IPR008250)%2C ATPase%2C P-type%2C calcium-transporting (InterPro:IPR005782)%2C ATPase%2C P-type cation-transporter%2C N-terminal (InterPro:IPR004014)%2C Haloacid dehalogenase-like hydrolase (InterPro:IPR005834)%2C ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757)%2C ATPase%2C P-type phosphorylation site (InterPro:IPR018303)%2C ATPase%2C P-type cation-transporter%2C C-terminal (InterPro:IPR006068)%3B BEST Arabidopsis thaliana protein match is: endomembrane-type CA-ATPase 4 (TAIR:AT1G07670.1)%3B Has 52947 Blast hits to 34771 proteins in 3297 species: Archae - 1117%3B Bacteria - 37251%3B Metazoa - 4506%3B Fungi - 2912%3B Plants - 2416%3B Viruses - 3%3B Other Eukaryotes - 4742 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10631259, PMID:10433975, PMID:9808725, PMID:9238019, PMID:11402198, PMID:12226493, PMID:12805592, PMID:12969422, PMID:15295017, PMID:16502469, PMID:16618929, PMID:18567829, PMID:19056336, locus:2026580; locus_type=protein_coding
AT1G07820.1	chr1:002421435	0.0	C/2421435-2421746	AT1G07820.1 CDS AT1G07820 ID=AT1G07820.1; Parent=AT1G07820; Name=AT1G07820.1; Note=Histone superfamily protein; conf_class=1; computational_description=Histone superfamily protein%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: nucleosome assembly%3B LOCATED IN: nucleus%2C nucleosome%3B CONTAINS InterPro DOMAIN/s: Histone-fold (InterPro:IPR009072)%2C Histone H4%2C conserved site (InterPro:IPR019809)%2C Histone core (InterPro:IPR007125)%2C Histone H4 (InterPro:IPR001951)%3B BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G59690.1)%3B Has 3184 Blast hits to 3184 proteins in 446 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1794%3B Fungi - 359%3B Plants - 490%3B Viruses - 6%3B Other Eukaryotes - 535 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16489130, PMID:16771839, locus:2026565; locus_type=protein_coding
AT1G07820.2	chr1:002421435	0.0	C/2421435-2421746	AT1G07820.2 CDS AT1G07820 ID=AT1G07820.2; Parent=AT1G07820; Name=AT1G07820.2; Note=Histone superfamily protein; conf_class=2; computational_description=Histone superfamily protein%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: nucleosome assembly%3B LOCATED IN: nucleus%2C nucleosome%3B CONTAINS InterPro DOMAIN/s: Histone-fold (InterPro:IPR009072)%2C Histone H4%2C conserved site (InterPro:IPR019809)%2C Histone core (InterPro:IPR007125)%2C Histone H4 (InterPro:IPR001951)%3B BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G59690.1)%3B Has 3184 Blast hits to 3184 proteins in 446 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1794%3B Fungi - 359%3B Plants - 490%3B Viruses - 6%3B Other Eukaryotes - 535 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16489130, PMID:16771839, locus:2026565; locus_type=protein_coding
AT1G07830.1	chr1:002422549	0.0	W/2422549-2422717,2422949-2423106,2423285-2423392	AT1G07830.1 CDS AT1G07830 ID=AT1G07830.1; Parent=AT1G07830; Name=AT1G07830.1; Note=ribosomal protein L29 family protein; conf_class=2; computational_description=ribosomal protein L29 family protein%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%3B LOCATED IN: mitochondrion%2C ribosome%2C mitochondrial ribosome%2C intracellular%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L47%2C mitochondrial (InterPro:IPR010729)%2C Ribosomal protein L29 (InterPro:IPR001854)%3B Has 365 Blast hits to 365 proteins in 201 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 115%3B Fungi - 146%3B Plants - 47%3B Viruses - 0%3B Other Eukaryotes - 55 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16368778, PMID:18650403, locus:2026550; locus_type=protein_coding
AT1G07840.1	chr1:002424603	0.0	W/2424603-2424646,2424839-2424926,2425169-2425348,2425432-2425611,2425695-2425862,2425952-2426103,2426192-2426306,2426414-2426425	AT1G07840.1 CDS AT1G07840 ID=AT1G07840.1; Parent=AT1G07840; Name=AT1G07840.1; Note=Sas10/Utp3/C1D family; conf_class=3; computational_description=Sas10/Utp3/C1D family%3B CONTAINS InterPro DOMAIN/s: Sas10/Utp3/C1D (InterPro:IPR007146)%3B BEST Arabidopsis thaliana protein match is: Sas10/U3 ribonucleoprotein (Utp) family protein (TAIR:AT2G43650.1)%3B Has 652 Blast hits to 650 proteins in 205 species: Archae - 2%3B Bacteria - 28%3B Metazoa - 259%3B Fungi - 134%3B Plants - 81%3B Viruses - 0%3B Other Eukaryotes - 148 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2026530; locus_type=protein_coding
AT1G07840.2	chr1:002424603	0.0	W/2424603-2424646,2424839-2424926,2425169-2425348,2425432-2425611,2425695-2425862,2425952-2426103,2426192-2426306,2426414-2426425	AT1G07840.2 CDS AT1G07840 ID=AT1G07840.2; Parent=AT1G07840; Name=AT1G07840.2; Note=Sas10/Utp3/C1D family; conf_class=3; computational_description=Sas10/Utp3/C1D family%3B CONTAINS InterPro DOMAIN/s: Sas10/Utp3/C1D (InterPro:IPR007146)%3B BEST Arabidopsis thaliana protein match is: Sas10/U3 ribonucleoprotein (Utp) family protein (TAIR:AT2G43650.1)%3B Has 652 Blast hits to 650 proteins in 205 species: Archae - 2%3B Bacteria - 28%3B Metazoa - 259%3B Fungi - 134%3B Plants - 81%3B Viruses - 0%3B Other Eukaryotes - 148 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2026530; locus_type=protein_coding
AT1G07840.3	chr1:002424603	0.0	W/2424603-2424646,2424839-2424926,2425169-2425348,2425432-2425611,2425695-2425862,2425952-2426131	AT1G07840.3 CDS AT1G07840 ID=AT1G07840.3; Parent=AT1G07840; Name=AT1G07840.3; Note=Sas10/Utp3/C1D family; conf_class=3; computational_description=Sas10/Utp3/C1D family%3B CONTAINS InterPro DOMAIN/s: Sas10/Utp3/C1D (InterPro:IPR007146)%3B BEST Arabidopsis thaliana protein match is: Sas10/U3 ribonucleoprotein (Utp) family protein (TAIR:AT2G43650.1)%3B Has 652 Blast hits to 650 proteins in 205 species: Archae - 2%3B Bacteria - 28%3B Metazoa - 259%3B Fungi - 134%3B Plants - 81%3B Viruses - 0%3B Other Eukaryotes - 148 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2026530; locus_type=protein_coding
AT1G07850.1	chr1:002426745	0.0	W/2426745-2427301,2427377-2427779,2427893-2428438,2428600-2428719	AT1G07850.1 CDS AT1G07850 ID=AT1G07850.1; Parent=AT1G07850; Name=AT1G07850.1; Note=transferring glycosyl group transferase (DUF604); conf_class=2; computational_description=Protein of unknown function (DUF604)%3B FUNCTIONS IN: transferase activity%2C transferring glycosyl groups%3B INVOLVED IN: N-terminal protein myristoylation%3B LOCATED IN: chloroplast%3B EXPRESSED IN: petal%2C leaf whorl%2C flower%3B EXPRESSED DURING: 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF604 (InterPro:IPR006740)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF604) (TAIR:AT4G23490.1)%3B Has 101 Blast hits to 95 proteins in 17 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 9%3B Fungi - 16%3B Plants - 76%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12912986, PMID:14576160, locus:2026514; locus_type=protein_coding
AT1G07860.1	chr1:002428942	0.0	C/2428942-2429183,2429266-2429431	AT1G07860.1 CDS AT1G07860 ID=AT1G07860.1; Parent=AT1G07860; Name=AT1G07860.1; Note=Serine/Threonine-kinase RLCKVII protein; conf_class=1; computational_description=BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G07870.2)%3B Has 7 Blast hits to 7 proteins in 4 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 7%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16510518, PMID:18775970, locus:2026499; locus_type=protein_coding
AT1G07870.2	chr1:002428942	0.0	C/2428942-2429183,2429266-2429378,2429943-2430241,2430321-2430712,2430818-2431007,2431105-2431343,2431702-2431843	AT1G07870.2 CDS AT1G07870 ID=AT1G07870.2; Parent=AT1G07870; Name=AT1G07870.2; Note=Protein kinase superfamily protein; conf_class=5; computational_description=Protein kinase superfamily protein%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: response to salt stress%2C N-terminal protein myristoylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT2G28590.1)%3B Has 114203 Blast hits to 112857 proteins in 4234 species: Archae - 113%3B Bacteria - 13468%3B Metazoa - 41680%3B Fungi - 9329%3B Plants - 32811%3B Viruses - 406%3B Other Eukaryotes - 16396 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:11351099, PMID:12912986, PMID:17408486, PMID:18650403, PMID:21477822, locus:2026535; locus_type=protein_coding
AT1G07870.1	chr1:002429933	0.0	C/2429933-2430241,2430321-2430712,2430818-2431007,2431105-2431343,2431702-2431843	AT1G07870.1 CDS AT1G07870 ID=AT1G07870.1; Parent=AT1G07870; Name=AT1G07870.1; Note=Protein kinase superfamily protein; conf_class=4; computational_description=Protein kinase superfamily protein%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: response to salt stress%2C N-terminal protein myristoylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT2G28590.1)%3B Has 114203 Blast hits to 112857 proteins in 4234 species: Archae - 113%3B Bacteria - 13468%3B Metazoa - 41680%3B Fungi - 9329%3B Plants - 32811%3B Viruses - 406%3B Other Eukaryotes - 16396 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:11351099, PMID:12912986, PMID:17408486, PMID:18650403, PMID:21477822, locus:2026535; locus_type=protein_coding
AT1G07880.2	chr1:002434193	0.0	C/2434193-2434356,2434438-2434621,2434727-2435059,2435152-2435289,2435359-2435488,2435570-2435712	AT1G07880.2 CDS AT1G07880 ID=AT1G07880.2; Parent=AT1G07880; Name=AT1G07880.2; Note=Protein kinase superfamily protein; curator_summary=member of MAP Kinase; conf_class=1; symbol=ATMPK13; computational_description=ATMPK13%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase-like domain (InterPro:IPR011009)%2C MAP kinase%2C conserved site (InterPro:IPR003527)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%3B BEST Arabidopsis thaliana protein match is: MAP kinase 5 (TAIR:AT4G11330.1)%3B Has 121340 Blast hits to 120172 proteins in 4531 species: Archae - 84%3B Bacteria - 12928%3B Metazoa - 46067%3B Fungi - 12050%3B Plants - 29427%3B Viruses - 570%3B Other Eukaryotes - 20214 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11544109, PMID:12119167, PMID:16537113, PMID:17933903, PMID:18441220, PMID:20736450, PMID:21904115, locus:2026484; locus_type=protein_coding
AT1G07880.1	chr1:002434706	0.0	C/2434706-2435059,2435152-2435289,2435359-2435488,2435570-2435712	AT1G07880.1 CDS AT1G07880 ID=AT1G07880.1; Parent=AT1G07880; Name=AT1G07880.1; Note=Protein kinase superfamily protein; curator_summary=member of MAP Kinase; conf_class=1; symbol=ATMPK13; computational_description=ATMPK13%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase-like domain (InterPro:IPR011009)%2C MAP kinase%2C conserved site (InterPro:IPR003527)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%3B BEST Arabidopsis thaliana protein match is: MAP kinase 5 (TAIR:AT4G11330.1)%3B Has 121340 Blast hits to 120172 proteins in 4531 species: Archae - 84%3B Bacteria - 12928%3B Metazoa - 46067%3B Fungi - 12050%3B Plants - 29427%3B Viruses - 570%3B Other Eukaryotes - 20214 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11544109, PMID:12119167, PMID:16537113, PMID:17933903, PMID:18441220, PMID:20736450, PMID:21904115, locus:2026484; locus_type=protein_coding
AT1G07885.1	chr1:002436663	0.0	C/2436663-2436827	AT1G07885.1 CDS AT1G07885 ID=AT1G07885.1; Parent=AT1G07885; Name=AT1G07885.1; Note=hypothetical protein; conf_class=6; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).; conf_rating=**; Dbxref=locus:5019474606; locus_type=protein_coding
AT1G07885.2	chr1:002436663	0.0	C/2436663-2436827	AT1G07885.2 CDS AT1G07885 ID=AT1G07885.2; Parent=AT1G07885; Name=AT1G07885.2; Note=hypothetical protein; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).; Dbxref=locus:5019474606; locus_type=protein_coding
AT1G07890.1	chr1:002438005	0.0	W/2438005-2438123,2438211-2438385,2438491-2438556,2438709-2438843,2438935-2439014,2439088-2439190,2439278-2439336,2439420-2439435	AT1G07890.1 CDS AT1G07890 ID=AT1G07890.1; Parent=AT1G07890; Name=AT1G07890.1; Note=ascorbate peroxidase 1; curator_summary=Encodes a cytosolic ascorbate peroxidase APX1. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1%2C APX2%2C APX6)%2C two chloroplastic types (stromal sAPX%2C thylakoid tAPX)%2C and three microsomal (APX3%2C APX4%2C APX5) isoforms. At least part of the induction of heat shock proteins during light stress in Arabidopsis is mediated by H2O2 that is scavenged by APX1. Expression of the gene is downregulated in the presence of paraquat%2C an inducer of photoxidative stress.; conf_class=2; symbol=APX1; Alias=ATAPX01, ATAPX1, CS1, MEE6, maternal effect embryo arrest 6; full_name=ascorbate peroxidase 1; computational_description=ascorbate peroxidase 1 (APX1)%3B FUNCTIONS IN: L-ascorbate peroxidase activity%3B INVOLVED IN: in 6 processes%3B LOCATED IN: cytosol%2C cell wall%2C chloroplast%2C plasma membrane%2C chloroplast stroma%3B EXPRESSED IN: 27 plant structures%3B EXPRESSED DURING: 16 growth stages%3B CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255)%2C Plant ascorbate peroxidase (InterPro:IPR002207)%2C Peroxidases heam-ligand binding site (InterPro:IPR019793)%2C Peroxidase%2C active site (InterPro:IPR019794)%2C Haem peroxidase%2C plant/fungal/bacterial (InterPro:IPR002016)%3B BEST Arabidopsis thaliana protein match is: ascorbate peroxidase 2 (TAIR:AT3G09640.2)%3B Has 8811 Blast hits to 8057 proteins in 1265 species: Archae - 75%3B Bacteria - 2912%3B Metazoa - 21%3B Fungi - 794%3B Plants - 3291%3B Viruses - 0%3B Other Eukaryotes - 1718 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9808745, PMID:9291097, PMID:9144965, PMID:8534847, PMID:8422923, PMID:12068123, PMID:12626114, PMID:12694594, PMID:14739345, PMID:14722088, PMID:15187287, PMID:15608336, PMID:15634699, PMID:15919670, PMID:16034597, PMID:16897488, PMID:17080932, PMID:17556505, PMID:18775970, PMID:18852264, PMID:19125253, PMID:19284649, PMID:16483133, PMID:19884228, PMID:20080316, PMID:20118269, PMID:20736450, PMID:21051935, PMID:21153767, PMID:21492976, PMID:21220338, PMID:22115780, PMID:22661072, PMID:22921811, PMID:23183257, PMID:23289948, PMID:23448691, PMID:23682113, PMID:23918967, PMID:24088017, PMID:24064926, PMID:24792388, PMID:25320212, PMID:25515798, PMID:25482750, PMID:25667317, locus:2026616; locus_type=protein_coding
AT1G07890.2	chr1:002438005	0.0	W/2438005-2438123,2438211-2438385,2438491-2438556,2438709-2438843,2438935-2439014,2439088-2439190,2439278-2439336,2439420-2439435	AT1G07890.2 CDS AT1G07890 ID=AT1G07890.2; Parent=AT1G07890; Name=AT1G07890.2; Note=ascorbate peroxidase 1; curator_summary=Encodes a cytosolic ascorbate peroxidase APX1. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1%2C APX2%2C APX6)%2C two chloroplastic types (stromal sAPX%2C thylakoid tAPX)%2C and three microsomal (APX3%2C APX4%2C APX5) isoforms. At least part of the induction of heat shock proteins during light stress in Arabidopsis is mediated by H2O2 that is scavenged by APX1. Expression of the gene is downregulated in the presence of paraquat%2C an inducer of photoxidative stress.; conf_class=2; symbol=APX1; Alias=ATAPX01, ATAPX1, CS1, MEE6, maternal effect embryo arrest 6; full_name=ascorbate peroxidase 1; computational_description=ascorbate peroxidase 1 (APX1)%3B FUNCTIONS IN: L-ascorbate peroxidase activity%3B INVOLVED IN: in 6 processes%3B LOCATED IN: cytosol%2C cell wall%2C chloroplast%2C plasma membrane%2C chloroplast stroma%3B EXPRESSED IN: 27 plant structures%3B EXPRESSED DURING: 16 growth stages%3B CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255)%2C Plant ascorbate peroxidase (InterPro:IPR002207)%2C Peroxidases heam-ligand binding site (InterPro:IPR019793)%2C Peroxidase%2C active site (InterPro:IPR019794)%2C Haem peroxidase%2C plant/fungal/bacterial (InterPro:IPR002016)%3B BEST Arabidopsis thaliana protein match is: ascorbate peroxidase 2 (TAIR:AT3G09640.2)%3B Has 8811 Blast hits to 8057 proteins in 1265 species: Archae - 75%3B Bacteria - 2912%3B Metazoa - 21%3B Fungi - 794%3B Plants - 3291%3B Viruses - 0%3B Other Eukaryotes - 1718 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9808745, PMID:9291097, PMID:9144965, PMID:8534847, PMID:8422923, PMID:12068123, PMID:12626114, PMID:12694594, PMID:14739345, PMID:14722088, PMID:15187287, PMID:15608336, PMID:15634699, PMID:15919670, PMID:16034597, PMID:16897488, PMID:17080932, PMID:17556505, PMID:18775970, PMID:18852264, PMID:19125253, PMID:19284649, PMID:16483133, PMID:19884228, PMID:20080316, PMID:20118269, PMID:20736450, PMID:21051935, PMID:21153767, PMID:21492976, PMID:21220338, PMID:22115780, PMID:22661072, PMID:22921811, PMID:23183257, PMID:23289948, PMID:23448691, PMID:23682113, PMID:23918967, PMID:24088017, PMID:24064926, PMID:24792388, PMID:25320212, PMID:25515798, PMID:25482750, PMID:25667317, locus:2026616; locus_type=protein_coding
AT1G07890.3	chr1:002438005	0.0	W/2438005-2438123,2438211-2438385,2438491-2438556,2438709-2438843,2438935-2439014,2439088-2439190,2439278-2439336,2439420-2439435	AT1G07890.3 CDS AT1G07890 ID=AT1G07890.3; Parent=AT1G07890; Name=AT1G07890.3; Note=ascorbate peroxidase 1; curator_summary=Encodes a cytosolic ascorbate peroxidase APX1. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1%2C APX2%2C APX6)%2C two chloroplastic types (stromal sAPX%2C thylakoid tAPX)%2C and three microsomal (APX3%2C APX4%2C APX5) isoforms. At least part of the induction of heat shock proteins during light stress in Arabidopsis is mediated by H2O2 that is scavenged by APX1. Expression of the gene is downregulated in the presence of paraquat%2C an inducer of photoxidative stress.; conf_class=2; symbol=APX1; Alias=ATAPX01, ATAPX1, CS1, MEE6, maternal effect embryo arrest 6; full_name=ascorbate peroxidase 1; computational_description=ascorbate peroxidase 1 (APX1)%3B FUNCTIONS IN: L-ascorbate peroxidase activity%3B INVOLVED IN: in 6 processes%3B LOCATED IN: cytosol%2C cell wall%2C chloroplast%2C plasma membrane%2C chloroplast stroma%3B EXPRESSED IN: 27 plant structures%3B EXPRESSED DURING: 16 growth stages%3B CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255)%2C Plant ascorbate peroxidase (InterPro:IPR002207)%2C Peroxidases heam-ligand binding site (InterPro:IPR019793)%2C Peroxidase%2C active site (InterPro:IPR019794)%2C Haem peroxidase%2C plant/fungal/bacterial (InterPro:IPR002016)%3B BEST Arabidopsis thaliana protein match is: ascorbate peroxidase 2 (TAIR:AT3G09640.2)%3B Has 8811 Blast hits to 8057 proteins in 1265 species: Archae - 75%3B Bacteria - 2912%3B Metazoa - 21%3B Fungi - 794%3B Plants - 3291%3B Viruses - 0%3B Other Eukaryotes - 1718 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9808745, PMID:9291097, PMID:9144965, PMID:8534847, PMID:8422923, PMID:12068123, PMID:12626114, PMID:12694594, PMID:14739345, PMID:14722088, PMID:15187287, PMID:15608336, PMID:15634699, PMID:15919670, PMID:16034597, PMID:16897488, PMID:17080932, PMID:17556505, PMID:18775970, PMID:18852264, PMID:19125253, PMID:19284649, PMID:16483133, PMID:19884228, PMID:20080316, PMID:20118269, PMID:20736450, PMID:21051935, PMID:21153767, PMID:21492976, PMID:21220338, PMID:22115780, PMID:22661072, PMID:22921811, PMID:23183257, PMID:23289948, PMID:23448691, PMID:23682113, PMID:23918967, PMID:24088017, PMID:24064926, PMID:24792388, PMID:25320212, PMID:25515798, PMID:25482750, PMID:25667317, locus:2026616; locus_type=protein_coding
AT1G07890.4	chr1:002438005	0.0	W/2438005-2438123,2438211-2438385,2438491-2438556,2438709-2438843,2438935-2439014,2439088-2439190,2439278-2439336,2439420-2439435	AT1G07890.4 CDS AT1G07890 ID=AT1G07890.4; Parent=AT1G07890; Name=AT1G07890.4; Note=ascorbate peroxidase 1; curator_summary=Encodes a cytosolic ascorbate peroxidase APX1. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1%2C APX2%2C APX6)%2C two chloroplastic types (stromal sAPX%2C thylakoid tAPX)%2C and three microsomal (APX3%2C APX4%2C APX5) isoforms. At least part of the induction of heat shock proteins during light stress in Arabidopsis is mediated by H2O2 that is scavenged by APX1. Expression of the gene is downregulated in the presence of paraquat%2C an inducer of photoxidative stress.; conf_class=2; symbol=APX1; Alias=ATAPX01, ATAPX1, CS1, MEE6, maternal effect embryo arrest 6; full_name=ascorbate peroxidase 1; computational_description=ascorbate peroxidase 1 (APX1)%3B FUNCTIONS IN: L-ascorbate peroxidase activity%3B INVOLVED IN: in 6 processes%3B LOCATED IN: cytosol%2C cell wall%2C chloroplast%2C plasma membrane%2C chloroplast stroma%3B EXPRESSED IN: 27 plant structures%3B EXPRESSED DURING: 16 growth stages%3B CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255)%2C Plant ascorbate peroxidase (InterPro:IPR002207)%2C Peroxidases heam-ligand binding site (InterPro:IPR019793)%2C Peroxidase%2C active site (InterPro:IPR019794)%2C Haem peroxidase%2C plant/fungal/bacterial (InterPro:IPR002016)%3B BEST Arabidopsis thaliana protein match is: ascorbate peroxidase 2 (TAIR:AT3G09640.2)%3B Has 8811 Blast hits to 8057 proteins in 1265 species: Archae - 75%3B Bacteria - 2912%3B Metazoa - 21%3B Fungi - 794%3B Plants - 3291%3B Viruses - 0%3B Other Eukaryotes - 1718 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9808745, PMID:9291097, PMID:9144965, PMID:8534847, PMID:8422923, PMID:12068123, PMID:12626114, PMID:12694594, PMID:14739345, PMID:14722088, PMID:15187287, PMID:15608336, PMID:15634699, PMID:15919670, PMID:16034597, PMID:16897488, PMID:17080932, PMID:17556505, PMID:18775970, PMID:18852264, PMID:19125253, PMID:19284649, PMID:16483133, PMID:19884228, PMID:20080316, PMID:20118269, PMID:20736450, PMID:21051935, PMID:21153767, PMID:21492976, PMID:21220338, PMID:22115780, PMID:22661072, PMID:22921811, PMID:23183257, PMID:23289948, PMID:23448691, PMID:23682113, PMID:23918967, PMID:24088017, PMID:24064926, PMID:24792388, PMID:25320212, PMID:25515798, PMID:25482750, PMID:25667317, locus:2026616; locus_type=protein_coding
AT1G07890.5	chr1:002438005	0.0	W/2438005-2438123,2438211-2438385,2438491-2438556,2438709-2438843,2438935-2439014,2439088-2439190,2439278-2439336,2439420-2439435	AT1G07890.5 CDS AT1G07890 ID=AT1G07890.5; Parent=AT1G07890; Name=AT1G07890.5; Note=ascorbate peroxidase 1; curator_summary=Encodes a cytosolic ascorbate peroxidase APX1. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1%2C APX2%2C APX6)%2C two chloroplastic types (stromal sAPX%2C thylakoid tAPX)%2C and three microsomal (APX3%2C APX4%2C APX5) isoforms. At least part of the induction of heat shock proteins during light stress in Arabidopsis is mediated by H2O2 that is scavenged by APX1. Expression of the gene is downregulated in the presence of paraquat%2C an inducer of photoxidative stress.; conf_class=2; symbol=APX1; Alias=ATAPX01, ATAPX1, CS1, MEE6, maternal effect embryo arrest 6; full_name=ascorbate peroxidase 1; computational_description=ascorbate peroxidase 1 (APX1)%3B FUNCTIONS IN: L-ascorbate peroxidase activity%3B INVOLVED IN: in 6 processes%3B LOCATED IN: cytosol%2C cell wall%2C chloroplast%2C plasma membrane%2C chloroplast stroma%3B EXPRESSED IN: 27 plant structures%3B EXPRESSED DURING: 16 growth stages%3B CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255)%2C Plant ascorbate peroxidase (InterPro:IPR002207)%2C Peroxidases heam-ligand binding site (InterPro:IPR019793)%2C Peroxidase%2C active site (InterPro:IPR019794)%2C Haem peroxidase%2C plant/fungal/bacterial (InterPro:IPR002016)%3B BEST Arabidopsis thaliana protein match is: ascorbate peroxidase 2 (TAIR:AT3G09640.2)%3B Has 8811 Blast hits to 8057 proteins in 1265 species: Archae - 75%3B Bacteria - 2912%3B Metazoa - 21%3B Fungi - 794%3B Plants - 3291%3B Viruses - 0%3B Other Eukaryotes - 1718 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9808745, PMID:9291097, PMID:9144965, PMID:8534847, PMID:8422923, PMID:12068123, PMID:12626114, PMID:12694594, PMID:14739345, PMID:14722088, PMID:15187287, PMID:15608336, PMID:15634699, PMID:15919670, PMID:16034597, PMID:16897488, PMID:17080932, PMID:17556505, PMID:18775970, PMID:18852264, PMID:19125253, PMID:19284649, PMID:16483133, PMID:19884228, PMID:20080316, PMID:20118269, PMID:20736450, PMID:21051935, PMID:21153767, PMID:21492976, PMID:21220338, PMID:22115780, PMID:22661072, PMID:22921811, PMID:23183257, PMID:23289948, PMID:23448691, PMID:23682113, PMID:23918967, PMID:24088017, PMID:24064926, PMID:24792388, PMID:25320212, PMID:25515798, PMID:25482750, PMID:25667317, locus:2026616; locus_type=protein_coding
AT1G07890.6	chr1:002438005	0.0	W/2438005-2438123,2438211-2438385,2438491-2438556,2438709-2438843,2438935-2439014,2439088-2439190,2439278-2439349	AT1G07890.6 CDS AT1G07890 ID=AT1G07890.6; Parent=AT1G07890; Name=AT1G07890.6; Note=ascorbate peroxidase 1; curator_summary=Encodes a cytosolic ascorbate peroxidase APX1. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1%2C APX2%2C APX6)%2C two chloroplastic types (stromal sAPX%2C thylakoid tAPX)%2C and three microsomal (APX3%2C APX4%2C APX5) isoforms. At least part of the induction of heat shock proteins during light stress in Arabidopsis is mediated by H2O2 that is scavenged by APX1. Expression of the gene is downregulated in the presence of paraquat%2C an inducer of photoxidative stress.; conf_class=3; symbol=APX1; Alias=ATAPX01, ATAPX1, CS1, MEE6, maternal effect embryo arrest 6; full_name=ascorbate peroxidase 1; computational_description=ascorbate peroxidase 1 (APX1)%3B FUNCTIONS IN: L-ascorbate peroxidase activity%3B INVOLVED IN: in 6 processes%3B LOCATED IN: cytosol%2C cell wall%2C chloroplast%2C plasma membrane%2C chloroplast stroma%3B EXPRESSED IN: 27 plant structures%3B EXPRESSED DURING: 16 growth stages%3B CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255)%2C Plant ascorbate peroxidase (InterPro:IPR002207)%2C Peroxidases heam-ligand binding site (InterPro:IPR019793)%2C Peroxidase%2C active site (InterPro:IPR019794)%2C Haem peroxidase%2C plant/fungal/bacterial (InterPro:IPR002016)%3B BEST Arabidopsis thaliana protein match is: ascorbate peroxidase 2 (TAIR:AT3G09640.2)%3B Has 8811 Blast hits to 8057 proteins in 1265 species: Archae - 75%3B Bacteria - 2912%3B Metazoa - 21%3B Fungi - 794%3B Plants - 3291%3B Viruses - 0%3B Other Eukaryotes - 1718 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9808745, PMID:9291097, PMID:9144965, PMID:8534847, PMID:8422923, PMID:12068123, PMID:12626114, PMID:12694594, PMID:14739345, PMID:14722088, PMID:15187287, PMID:15608336, PMID:15634699, PMID:15919670, PMID:16034597, PMID:16897488, PMID:17080932, PMID:17556505, PMID:18775970, PMID:18852264, PMID:19125253, PMID:19284649, PMID:16483133, PMID:19884228, PMID:20080316, PMID:20118269, PMID:20736450, PMID:21051935, PMID:21153767, PMID:21492976, PMID:21220338, PMID:22115780, PMID:22661072, PMID:22921811, PMID:23183257, PMID:23289948, PMID:23448691, PMID:23682113, PMID:23918967, PMID:24088017, PMID:24064926, PMID:24792388, PMID:25320212, PMID:25515798, PMID:25482750, PMID:25667317, locus:2026616; locus_type=protein_coding
AT1G07890.7	chr1:002438005	0.0	W/2438005-2438123,2438211-2438385,2438491-2438556,2438709-2438843,2438935-2439014,2439088-2439190,2439278-2439336,2439420-2439435	AT1G07890.7 CDS AT1G07890 ID=AT1G07890.7; Parent=AT1G07890; Name=AT1G07890.7; Note=ascorbate peroxidase 1; curator_summary=Encodes a cytosolic ascorbate peroxidase APX1. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1%2C APX2%2C APX6)%2C two chloroplastic types (stromal sAPX%2C thylakoid tAPX)%2C and three microsomal (APX3%2C APX4%2C APX5) isoforms. At least part of the induction of heat shock proteins during light stress in Arabidopsis is mediated by H2O2 that is scavenged by APX1. Expression of the gene is downregulated in the presence of paraquat%2C an inducer of photoxidative stress.; conf_class=2; symbol=APX1; Alias=ATAPX01, ATAPX1, CS1, MEE6, maternal effect embryo arrest 6; full_name=ascorbate peroxidase 1; computational_description=ascorbate peroxidase 1 (APX1)%3B FUNCTIONS IN: L-ascorbate peroxidase activity%3B INVOLVED IN: in 6 processes%3B LOCATED IN: cytosol%2C cell wall%2C chloroplast%2C plasma membrane%2C chloroplast stroma%3B EXPRESSED IN: 27 plant structures%3B EXPRESSED DURING: 16 growth stages%3B CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255)%2C Plant ascorbate peroxidase (InterPro:IPR002207)%2C Peroxidases heam-ligand binding site (InterPro:IPR019793)%2C Peroxidase%2C active site (InterPro:IPR019794)%2C Haem peroxidase%2C plant/fungal/bacterial (InterPro:IPR002016)%3B BEST Arabidopsis thaliana protein match is: ascorbate peroxidase 2 (TAIR:AT3G09640.2)%3B Has 8811 Blast hits to 8057 proteins in 1265 species: Archae - 75%3B Bacteria - 2912%3B Metazoa - 21%3B Fungi - 794%3B Plants - 3291%3B Viruses - 0%3B Other Eukaryotes - 1718 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9808745, PMID:9291097, PMID:9144965, PMID:8534847, PMID:8422923, PMID:12068123, PMID:12626114, PMID:12694594, PMID:14739345, PMID:14722088, PMID:15187287, PMID:15608336, PMID:15634699, PMID:15919670, PMID:16034597, PMID:16897488, PMID:17080932, PMID:17556505, PMID:18775970, PMID:18852264, PMID:19125253, PMID:19284649, PMID:16483133, PMID:19884228, PMID:20080316, PMID:20118269, PMID:20736450, PMID:21051935, PMID:21153767, PMID:21492976, PMID:21220338, PMID:22115780, PMID:22661072, PMID:22921811, PMID:23183257, PMID:23289948, PMID:23448691, PMID:23682113, PMID:23918967, PMID:24088017, PMID:24064926, PMID:24792388, PMID:25320212, PMID:25515798, PMID:25482750, PMID:25667317, locus:2026616; locus_type=protein_coding
AT1G07890.8	chr1:002438005	0.0	W/2438005-2438123,2438211-2438385,2438491-2438556,2438709-2438843,2438935-2439014,2439088-2439190,2439278-2439336,2439420-2439435	AT1G07890.8 CDS AT1G07890 ID=AT1G07890.8; Parent=AT1G07890; Name=AT1G07890.8; Note=ascorbate peroxidase 1; curator_summary=Encodes a cytosolic ascorbate peroxidase APX1. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1%2C APX2%2C APX6)%2C two chloroplastic types (stromal sAPX%2C thylakoid tAPX)%2C and three microsomal (APX3%2C APX4%2C APX5) isoforms. At least part of the induction of heat shock proteins during light stress in Arabidopsis is mediated by H2O2 that is scavenged by APX1. Expression of the gene is downregulated in the presence of paraquat%2C an inducer of photoxidative stress.; conf_class=2; symbol=APX1; Alias=ATAPX01, ATAPX1, CS1, MEE6, maternal effect embryo arrest 6; full_name=ascorbate peroxidase 1; computational_description=ascorbate peroxidase 1 (APX1)%3B FUNCTIONS IN: L-ascorbate peroxidase activity%3B INVOLVED IN: in 6 processes%3B LOCATED IN: cytosol%2C cell wall%2C chloroplast%2C plasma membrane%2C chloroplast stroma%3B EXPRESSED IN: 27 plant structures%3B EXPRESSED DURING: 16 growth stages%3B CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255)%2C Plant ascorbate peroxidase (InterPro:IPR002207)%2C Peroxidases heam-ligand binding site (InterPro:IPR019793)%2C Peroxidase%2C active site (InterPro:IPR019794)%2C Haem peroxidase%2C plant/fungal/bacterial (InterPro:IPR002016)%3B BEST Arabidopsis thaliana protein match is: ascorbate peroxidase 2 (TAIR:AT3G09640.2)%3B Has 8811 Blast hits to 8057 proteins in 1265 species: Archae - 75%3B Bacteria - 2912%3B Metazoa - 21%3B Fungi - 794%3B Plants - 3291%3B Viruses - 0%3B Other Eukaryotes - 1718 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9808745, PMID:9291097, PMID:9144965, PMID:8534847, PMID:8422923, PMID:12068123, PMID:12626114, PMID:12694594, PMID:14739345, PMID:14722088, PMID:15187287, PMID:15608336, PMID:15634699, PMID:15919670, PMID:16034597, PMID:16897488, PMID:17080932, PMID:17556505, PMID:18775970, PMID:18852264, PMID:19125253, PMID:19284649, PMID:16483133, PMID:19884228, PMID:20080316, PMID:20118269, PMID:20736450, PMID:21051935, PMID:21153767, PMID:21492976, PMID:21220338, PMID:22115780, PMID:22661072, PMID:22921811, PMID:23183257, PMID:23289948, PMID:23448691, PMID:23682113, PMID:23918967, PMID:24088017, PMID:24064926, PMID:24792388, PMID:25320212, PMID:25515798, PMID:25482750, PMID:25667317, locus:2026616; locus_type=protein_coding
AT1G07900.1	chr1:002442624	0.0	W/2442624-2442860,2443296-2443631	AT1G07900.1 CDS AT1G07900 ID=AT1G07900.1; Parent=AT1G07900; Name=AT1G07900.1; Note=LOB domain-containing protein 1; conf_class=1; symbol=LBD1; full_name=LOB domain-containing protein 1; computational_description=LOB domain-containing protein 1 (LBD1)%3B CONTAINS InterPro DOMAIN/s: Lateral organ boundaries%2C LOB (InterPro:IPR004883)%3B BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 11 (TAIR:AT2G28500.1)%3B Has 1035 Blast hits to 1030 proteins in 25 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1035%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11743115, PMID:12068116, PMID:12040093, PMID:14576160, PMID:14671022, PMID:16934950, PMID:19154202, PMID:20736450, PMID:21097711, locus:2026611; locus_type=protein_coding
AT1G07902.1	chr1:002443918	0.0	W/2443918-2444010,2444643-2444664,2444679-2444774,2444873-2444883	AT1G07902.1 CDS AT1G07902 ID=AT1G07902.1; Parent=AT1G07902; Name=AT1G07902.1; Note=hypothetical protein; locus_type=protein_coding
AT1G07901.1	chr1:002443971	0.0	C/2443971-2444123	AT1G07901.1 CDS AT1G07901 ID=AT1G07901.1; Parent=AT1G07901; Name=AT1G07901.1; Note=hypothetical protein; conf_class=8; computational_description=unknown protein%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=*; Dbxref=PMID:17395691, locus:4515102506; locus_type=protein_coding
AT1TE07970	chr1:002444684	0.0	W/2444684-2444851	AT1TE07970 transposable_element AT1TE07970 ID=AT1TE07970; Name=AT1TE07970; Alias=ATGP8
AT1G07910.2	chr1:002446185	0.0	W/2446185-2446358,2446667-2447104,2447201-2447251,2447345-2447427,2447844-2447943,2448048-2448126,2448228-2448351,2448702-2448808,2448929-2449057,2449163-2449227,2449344-2449499,2449654-2449814,2449917-2449948,2450208-2450371,2450487-2450566,2450763-2450828,2450986-2451275,2451568-2451675,2451768-2451865,2452044-2452104,2452469-2452545,2452657-2452728,2452807-2452883,2453003-2453083,2453442-2453544,2453698-2453856,2453988-2454386	AT1G07910.2 CDS AT1G07910 ID=AT1G07910.2; Parent=AT1G07910; Name=AT1G07910.2; Note=RNAligase; curator_summary=Encodes a tRNA ligase that resembles the yeast Trl1 RNA ligase in structure and function but very different in sequence. Like Trl1%2C AtRNL consists of two domains %E2%80%94 an N-terminal ligase component and a C-terminal 5'-kinase/2'%2C3'-cyclic phosphodiesterase (CPD) component%E2%80%94 that can function in tRNA splicing in vivo when expressed as separate polypeptides. Requires a 2'-PO4 end for tRNA splicing in vivo.; conf_class=3; symbol=RNL; Alias=ATRNL, ARABIDOPSIS THALIANA RNA LIGASE, AtRLG1, AtRLG1; full_name=RNAligase; computational_description=RNAligase (RNL)%3B CONTAINS InterPro DOMAIN/s: tRNA ligase%2C phosphodiesterase%2C fungi (InterPro:IPR015965)%3B Has 209 Blast hits to 196 proteins in 23 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 3%3B Plants - 200%3B Viruses - 0%3B Other Eukaryotes - 6 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:20844078, PMID:24554441, locus:2205085; locus_type=protein_coding
AT1G07910.1	chr1:002446712	0.0	W/2446712-2447104,2447201-2447251,2447345-2447427,2447844-2447943,2448048-2448126,2448228-2448351,2448702-2448808,2448929-2449057,2449163-2449227,2449344-2449499,2449654-2449814,2449917-2449948,2450208-2450371,2450487-2450566,2450763-2450828,2450986-2451275,2451568-2451675,2451768-2451865,2452044-2452104,2452469-2452545,2452657-2452728,2452807-2452883,2453003-2453083,2453442-2453544,2453698-2453856,2453988-2454386	AT1G07910.1 CDS AT1G07910 ID=AT1G07910.1; Parent=AT1G07910; Name=AT1G07910.1; Note=RNAligase; curator_summary=Encodes a tRNA ligase that resembles the yeast Trl1 RNA ligase in structure and function but very different in sequence. Like Trl1%2C AtRNL consists of two domains %E2%80%94 an N-terminal ligase component and a C-terminal 5'-kinase/2'%2C3'-cyclic phosphodiesterase (CPD) component%E2%80%94 that can function in tRNA splicing in vivo when expressed as separate polypeptides. Requires a 2'-PO4 end for tRNA splicing in vivo.; conf_class=2; symbol=RNL; Alias=ATRNL, ARABIDOPSIS THALIANA RNA LIGASE, AtRLG1, AtRLG1; full_name=RNAligase; computational_description=RNAligase (RNL)%3B CONTAINS InterPro DOMAIN/s: tRNA ligase%2C phosphodiesterase%2C fungi (InterPro:IPR015965)%3B Has 209 Blast hits to 196 proteins in 23 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 3%3B Plants - 200%3B Viruses - 0%3B Other Eukaryotes - 6 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:20844078, PMID:24554441, locus:2205085; locus_type=protein_coding
AT1G44370.1	chr1:002455368	0.0	W/2455368-2455439	AT1G44370.1 pseudogenic_tRNA AT1G44370 ID=AT1G44370.1; Parent=AT1G44370; Name=AT1G44370.1; Dbxref=PMID:23066098; locus_type=pseudogene
AT1G07920.1	chr1:002455559	0.0	W/2455559-2456020,2456114-2457001	AT1G07920.1 CDS AT1G07920 ID=AT1G07920.1; Parent=AT1G07920; Name=AT1G07920.1; Note=GTP binding Elongation factor Tu family protein; conf_class=2; computational_description=GTP binding Elongation factor Tu family protein%3B FUNCTIONS IN: calmodulin binding%2C translation elongation factor activity%3B INVOLVED IN: response to cadmium ion%3B LOCATED IN: mitochondrion%2C nucleolus%2C plasma membrane%2C chloroplast%2C membrane%3B EXPRESSED IN: 6 plant structures%3B EXPRESSED DURING: seedling growth%3B CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A%2C C-terminal (InterPro:IPR004160)%2C Translation elongation factor EFTu/EF1A%2C domain 2 (InterPro:IPR004161)%2C Translation elongation factor EF1A/initiation factor IF2gamma%2C C-terminal (InterPro:IPR009001)%2C Protein synthesis factor%2C GTP-binding (InterPro:IPR000795)%2C Translation elongation factor EF1A%2C eukaryotic/archaeal (InterPro:IPR004539)%2C Translation elongation/initiation factor/Ribosomal%2C beta-barrel (InterPro:IPR009000)%3B BEST Arabidopsis thaliana protein match is: GTP binding Elongation factor Tu family protein (TAIR:AT5G60390.3)%3B Has 84282 Blast hits to 84186 proteins in 18729 species: Archae - 1011%3B Bacteria - 33710%3B Metazoa - 21823%3B Fungi - 13003%3B Plants - 1919%3B Viruses - 6%3B Other Eukaryotes - 12810 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11782485, PMID:12381738, PMID:12366802, PMID:12509522, PMID:14508008, PMID:12960166, PMID:14675533, PMID:14671022, PMID:14671017, PMID:14730065, PMID:15295017, PMID:15469497, PMID:15971193, PMID:15965024, PMID:15994234, PMID:16021339, PMID:16166256, PMID:16247729, PMID:16242667, PMID:16415211, PMID:16502469, PMID:16621846, PMID:16900325, PMID:17897408, PMID:18319396, PMID:18633119, PMID:18931141, PMID:20836890, PMID:23289948, locus:2205095; locus_type=protein_coding
AT1G07930.1	chr1:002459014	0.0	W/2459014-2459475,2459571-2460458	AT1G07930.1 CDS AT1G07930 ID=AT1G07930.1; Parent=AT1G07930; Name=AT1G07930.1; Note=GTP binding Elongation factor Tu family protein; conf_class=2; computational_description=GTP binding Elongation factor Tu family protein%3B FUNCTIONS IN: calmodulin binding%2C translation elongation factor activity%3B INVOLVED IN: translational elongation%3B LOCATED IN: mitochondrion%2C vacuole%3B EXPRESSED IN: cotyledon%2C male gametophyte%2C guard cell%2C juvenile leaf%2C leaf%3B EXPRESSED DURING: seedling growth%3B CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A%2C C-terminal (InterPro:IPR004160)%2C Translation elongation factor EFTu/EF1A%2C domain 2 (InterPro:IPR004161)%2C Translation elongation factor EF1A/initiation factor IF2gamma%2C C-terminal (InterPro:IPR009001)%2C Protein synthesis factor%2C GTP-binding (InterPro:IPR000795)%2C Translation elongation factor EF1A%2C eukaryotic/archaeal (InterPro:IPR004539)%2C Translation elongation/initiation factor/Ribosomal%2C beta-barrel (InterPro:IPR009000)%3B BEST Arabidopsis thaliana protein match is: GTP binding Elongation factor Tu family protein (TAIR:AT5G60390.3)%3B Has 84282 Blast hits to 84186 proteins in 18729 species: Archae - 1011%3B Bacteria - 33710%3B Metazoa - 21823%3B Fungi - 13003%3B Plants - 1919%3B Viruses - 6%3B Other Eukaryotes - 12810 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11782485, PMID:12805593, PMID:14505352, PMID:12969430, PMID:14535880, PMID:14671022, PMID:14730065, PMID:14760709, PMID:15295017, PMID:15769804, PMID:15829605, PMID:15965024, PMID:16166256, PMID:16247729, PMID:16415211, PMID:17253988, PMID:17355434, PMID:17675405, PMID:17897408, PMID:18305006, PMID:18426585, PMID:18633119, PMID:22115780, PMID:23281391, locus:2205105; locus_type=protein_coding
AT1G07930.2	chr1:002459014	0.0	W/2459014-2459475,2459571-2459870,2460102-2460458	AT1G07930.2 CDS AT1G07930 ID=AT1G07930.2; Parent=AT1G07930; Name=AT1G07930.2; Note=GTP binding Elongation factor Tu family protein; conf_class=2; computational_description=GTP binding Elongation factor Tu family protein%3B FUNCTIONS IN: calmodulin binding%2C translation elongation factor activity%3B INVOLVED IN: translational elongation%3B LOCATED IN: mitochondrion%2C vacuole%3B EXPRESSED IN: cotyledon%2C male gametophyte%2C guard cell%2C juvenile leaf%2C leaf%3B EXPRESSED DURING: seedling growth%3B CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A%2C C-terminal (InterPro:IPR004160)%2C Translation elongation factor EFTu/EF1A%2C domain 2 (InterPro:IPR004161)%2C Translation elongation factor EF1A/initiation factor IF2gamma%2C C-terminal (InterPro:IPR009001)%2C Protein synthesis factor%2C GTP-binding (InterPro:IPR000795)%2C Translation elongation factor EF1A%2C eukaryotic/archaeal (InterPro:IPR004539)%2C Translation elongation/initiation factor/Ribosomal%2C beta-barrel (InterPro:IPR009000)%3B BEST Arabidopsis thaliana protein match is: GTP binding Elongation factor Tu family protein (TAIR:AT5G60390.3)%3B Has 84282 Blast hits to 84186 proteins in 18729 species: Archae - 1011%3B Bacteria - 33710%3B Metazoa - 21823%3B Fungi - 13003%3B Plants - 1919%3B Viruses - 6%3B Other Eukaryotes - 12810 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11782485, PMID:12805593, PMID:14505352, PMID:12969430, PMID:14535880, PMID:14671022, PMID:14730065, PMID:14760709, PMID:15295017, PMID:15769804, PMID:15829605, PMID:15965024, PMID:16166256, PMID:16247729, PMID:16415211, PMID:17253988, PMID:17355434, PMID:17675405, PMID:17897408, PMID:18305006, PMID:18426585, PMID:18633119, PMID:22115780, PMID:23281391, locus:2205105; locus_type=protein_coding
AT1TE08020	chr1:002461274	0.0	C/2461274-2462129	AT1TE08020 transposable_element AT1TE08020 ID=AT1TE08020; Name=AT1TE08020; Alias=ATREP3
AT1G07940.1	chr1:002463350	0.0	C/2463350-2464237,2464331-2464792	AT1G07940.1 CDS AT1G07940 ID=AT1G07940.1; Parent=AT1G07940; Name=AT1G07940.1; Note=GTP binding Elongation factor Tu family protein; conf_class=2; computational_description=GTP binding Elongation factor Tu family protein%3B FUNCTIONS IN: calmodulin binding%2C translation elongation factor activity%3B INVOLVED IN: translational elongation%3B LOCATED IN: mitochondrion%2C plasma membrane%3B EXPRESSED IN: guard cell%2C juvenile leaf%2C leaf%3B EXPRESSED DURING: seedling growth%3B CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A%2C C-terminal (InterPro:IPR004160)%2C Translation elongation factor EFTu/EF1A%2C domain 2 (InterPro:IPR004161)%2C Translation elongation factor EF1A/initiation factor IF2gamma%2C C-terminal (InterPro:IPR009001)%2C Protein synthesis factor%2C GTP-binding (InterPro:IPR000795)%2C Translation elongation/initiation factor/Ribosomal%2C beta-barrel (InterPro:IPR009000)%2C Translation elongation factor EF1A%2C eukaryotic/archaeal (InterPro:IPR004539)%3B BEST Arabidopsis thaliana protein match is: GTP binding Elongation factor Tu family protein (TAIR:AT5G60390.3)%3B Has 84282 Blast hits to 84186 proteins in 18729 species: Archae - 1011%3B Bacteria - 33710%3B Metazoa - 21823%3B Fungi - 13003%3B Plants - 1919%3B Viruses - 6%3B Other Eukaryotes - 12810 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11782485, PMID:12609038, PMID:12969430, PMID:14671022, PMID:14730065, PMID:15060130, PMID:15295017, PMID:15341625, PMID:15965024, PMID:16166256, PMID:16212602, PMID:16415211, PMID:16712733, PMID:17092312, PMID:17897408, PMID:18319396, PMID:18515127, PMID:18633119, PMID:18622388, locus:2205115; locus_type=protein_coding
AT1G07940.2	chr1:002463350	0.0	C/2463350-2464237,2464331-2464792	AT1G07940.2 CDS AT1G07940 ID=AT1G07940.2; Parent=AT1G07940; Name=AT1G07940.2; Note=GTP binding Elongation factor Tu family protein; conf_class=2; computational_description=GTP binding Elongation factor Tu family protein%3B FUNCTIONS IN: calmodulin binding%2C translation elongation factor activity%3B INVOLVED IN: translational elongation%3B LOCATED IN: mitochondrion%2C plasma membrane%3B EXPRESSED IN: guard cell%2C juvenile leaf%2C leaf%3B EXPRESSED DURING: seedling growth%3B CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A%2C C-terminal (InterPro:IPR004160)%2C Translation elongation factor EFTu/EF1A%2C domain 2 (InterPro:IPR004161)%2C Translation elongation factor EF1A/initiation factor IF2gamma%2C C-terminal (InterPro:IPR009001)%2C Protein synthesis factor%2C GTP-binding (InterPro:IPR000795)%2C Translation elongation/initiation factor/Ribosomal%2C beta-barrel (InterPro:IPR009000)%2C Translation elongation factor EF1A%2C eukaryotic/archaeal (InterPro:IPR004539)%3B BEST Arabidopsis thaliana protein match is: GTP binding Elongation factor Tu family protein (TAIR:AT5G60390.3)%3B Has 84282 Blast hits to 84186 proteins in 18729 species: Archae - 1011%3B Bacteria - 33710%3B Metazoa - 21823%3B Fungi - 13003%3B Plants - 1919%3B Viruses - 6%3B Other Eukaryotes - 12810 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11782485, PMID:12609038, PMID:12969430, PMID:14671022, PMID:14730065, PMID:15060130, PMID:15295017, PMID:15341625, PMID:15965024, PMID:16166256, PMID:16212602, PMID:16415211, PMID:16712733, PMID:17092312, PMID:17897408, PMID:18319396, PMID:18515127, PMID:18633119, PMID:18622388, locus:2205115; locus_type=protein_coding
AT1G07940.3	chr1:002463350	0.0	C/2463350-2464237,2464331-2464792	AT1G07940.3 CDS AT1G07940 ID=AT1G07940.3; Parent=AT1G07940; Name=AT1G07940.3; Note=GTP binding Elongation factor Tu family protein; Dbxref=PMID:11782485, PMID:12609038, PMID:12969430, PMID:14671022, PMID:14730065, PMID:15060130, PMID:15295017, PMID:15341625, PMID:15965024, PMID:16166256, PMID:16212602, PMID:16415211, PMID:16712733, PMID:17092312, PMID:17897408, PMID:18319396, PMID:18515127, PMID:18633119, PMID:18622388, locus:2205115; computational_description=GTP binding Elongation factor Tu family protein%3B FUNCTIONS IN: calmodulin binding%2C translation elongation factor activity%3B INVOLVED IN: translational elongation%3B LOCATED IN: mitochondrion%2C plasma membrane%3B EXPRESSED IN: guard cell%2C juvenile leaf%2C leaf%3B EXPRESSED DURING: seedling growth%3B CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A%2C C-terminal (InterPro:IPR004160)%2C Translation elongation factor EFTu/EF1A%2C domain 2 (InterPro:IPR004161)%2C Translation elongation factor EF1A/initiation factor IF2gamma%2C C-terminal (InterPro:IPR009001)%2C Protein synthesis factor%2C GTP-binding (InterPro:IPR000795)%2C Translation elongation/initiation factor/Ribosomal%2C beta-barrel (InterPro:IPR009000)%2C Translation elongation factor EF1A%2C eukaryotic/archaeal (InterPro:IPR004539)%3B BEST Arabidopsis thaliana protein match is: GTP binding Elongation factor Tu family protein (TAIR:AT5G60390.3)%3B Has 84282 Blast hits to 84186 proteins in 18729 species: Archae - 1011%3B Bacteria - 33710%3B Metazoa - 21823%3B Fungi - 13003%3B Plants - 1919%3B Viruses - 6%3B Other Eukaryotes - 12810 (source: NCBI BLink).; locus_type=protein_coding
AT1G07940.4	chr1:002463350	0.0	C/2463350-2464237,2464331-2464792	AT1G07940.4 CDS AT1G07940 ID=AT1G07940.4; Parent=AT1G07940; Name=AT1G07940.4; Note=GTP binding Elongation factor Tu family protein; Dbxref=PMID:11782485, PMID:12609038, PMID:12969430, PMID:14671022, PMID:14730065, PMID:15060130, PMID:15295017, PMID:15341625, PMID:15965024, PMID:16166256, PMID:16212602, PMID:16415211, PMID:16712733, PMID:17092312, PMID:17897408, PMID:18319396, PMID:18515127, PMID:18633119, PMID:18622388, locus:2205115; computational_description=GTP binding Elongation factor Tu family protein%3B FUNCTIONS IN: calmodulin binding%2C translation elongation factor activity%3B INVOLVED IN: translational elongation%3B LOCATED IN: mitochondrion%2C plasma membrane%3B EXPRESSED IN: guard cell%2C juvenile leaf%2C leaf%3B EXPRESSED DURING: seedling growth%3B CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A%2C C-terminal (InterPro:IPR004160)%2C Translation elongation factor EFTu/EF1A%2C domain 2 (InterPro:IPR004161)%2C Translation elongation factor EF1A/initiation factor IF2gamma%2C C-terminal (InterPro:IPR009001)%2C Protein synthesis factor%2C GTP-binding (InterPro:IPR000795)%2C Translation elongation/initiation factor/Ribosomal%2C beta-barrel (InterPro:IPR009000)%2C Translation elongation factor EF1A%2C eukaryotic/archaeal (InterPro:IPR004539)%3B BEST Arabidopsis thaliana protein match is: GTP binding Elongation factor Tu family protein (TAIR:AT5G60390.3)%3B Has 84282 Blast hits to 84186 proteins in 18729 species: Archae - 1011%3B Bacteria - 33710%3B Metazoa - 21823%3B Fungi - 13003%3B Plants - 1919%3B Viruses - 6%3B Other Eukaryotes - 12810 (source: NCBI BLink).; locus_type=protein_coding
AT1G44500.1	chr1:002464892	0.0	C/2464892-2464962	AT1G44500.1 pseudogenic_tRNA AT1G44500 ID=AT1G44500.1; Parent=AT1G44500; Name=AT1G44500.1; Dbxref=PMID:23066098; locus_type=pseudogene
AT1G07950.1	chr1:002466061	0.0	C/2466061-2466294,2466640-2466705,2466818-2466982	AT1G07950.1 CDS AT1G07950 ID=AT1G07950.1; Parent=AT1G07950; Name=AT1G07950.1; Note=Surfeit locus protein 5 subunit 22 of Mediator complex; conf_class=2; symbol=MED22B; computational_description=MED22B%3B FUNCTIONS IN: RNA polymerase II transcription mediator activity%3B INVOLVED IN: regulation of transcription from RNA polymerase II promoter%3B LOCATED IN: mediator complex%3B CONTAINS InterPro DOMAIN/s: Mediator complex%2C subunit Med22 (InterPro:IPR009332)%3B BEST Arabidopsis thaliana protein match is: Surfeit locus protein 5 subunit 22 of Mediator complex (TAIR:AT1G16430.1)%3B Has 245 Blast hits to 245 proteins in 83 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 164%3B Fungi - 15%3B Plants - 53%3B Viruses - 0%3B Other Eukaryotes - 13 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17560376, PMID:19671879, PMID:22021418, locus:2205130; locus_type=protein_coding
AT1G07950.2	chr1:002466061	0.0	C/2466061-2466294,2466640-2466705,2466818-2467072	AT1G07950.2 CDS AT1G07950 ID=AT1G07950.2; Parent=AT1G07950; Name=AT1G07950.2; Note=Surfeit locus protein 5 subunit 22 of Mediator complex; symbol=MED22B; computational_description=MED22B%3B FUNCTIONS IN: RNA polymerase II transcription mediator activity%3B INVOLVED IN: regulation of transcription from RNA polymerase II promoter%3B LOCATED IN: mediator complex%3B CONTAINS InterPro DOMAIN/s: Mediator complex%2C subunit Med22 (InterPro:IPR009332)%3B BEST Arabidopsis thaliana protein match is: Surfeit locus protein 5 subunit 22 of Mediator complex (TAIR:AT1G16430.1)%3B Has 245 Blast hits to 245 proteins in 83 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 164%3B Fungi - 15%3B Plants - 53%3B Viruses - 0%3B Other Eukaryotes - 13 (source: NCBI BLink).; Dbxref=PMID:17560376, PMID:19671879, PMID:22021418, locus:2205130; locus_type=protein_coding
AT1G07960.1	chr1:002467681	0.0	W/2467681-2467794,2468305-2468363,2468452-2468627,2468740-2468831	AT1G07960.1 CDS AT1G07960 ID=AT1G07960.1; Parent=AT1G07960; Name=AT1G07960.1; Note=PDI-like 5-1; curator_summary=Encodes a protein disulfide isomerase-like (PDIL) protein%2C a member of a multigene family within the thioredoxin (TRX) superfamily.; conf_class=2; symbol=PDIL5-1; Alias=ATPDIL5-1, PDI-like 5-1; full_name=PDI-like 5-1; computational_description=PDI-like 5-1 (PDIL5-1)%3B INVOLVED IN: cell redox homeostasis%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335)%2C Thioredoxin-like (InterPro:IPR017936)%2C Thioredoxin domain (InterPro:IPR013766)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B BEST Arabidopsis thaliana protein match is: thioredoxin family protein (TAIR:AT2G47470.1)%3B Has 11046 Blast hits to 9080 proteins in 1903 species: Archae - 38%3B Bacteria - 4054%3B Metazoa - 3042%3B Fungi - 886%3B Plants - 964%3B Viruses - 4%3B Other Eukaryotes - 2058 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15684019, PMID:15978049, PMID:18574595, PMID:18545667, PMID:18775970, locus:2205145; locus_type=protein_coding
AT1G07960.2	chr1:002467681	0.0	W/2467681-2467794,2468305-2468363,2468452-2468627,2468740-2468831	AT1G07960.2 CDS AT1G07960 ID=AT1G07960.2; Parent=AT1G07960; Name=AT1G07960.2; Note=PDI-like 5-1; curator_summary=Encodes a protein disulfide isomerase-like (PDIL) protein%2C a member of a multigene family within the thioredoxin (TRX) superfamily.; conf_class=2; symbol=PDIL5-1; Alias=ATPDIL5-1, PDI-like 5-1; full_name=PDI-like 5-1; computational_description=PDI-like 5-1 (PDIL5-1)%3B INVOLVED IN: cell redox homeostasis%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335)%2C Thioredoxin-like (InterPro:IPR017936)%2C Thioredoxin domain (InterPro:IPR013766)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B BEST Arabidopsis thaliana protein match is: thioredoxin family protein (TAIR:AT2G47470.1)%3B Has 11046 Blast hits to 9080 proteins in 1903 species: Archae - 38%3B Bacteria - 4054%3B Metazoa - 3042%3B Fungi - 886%3B Plants - 964%3B Viruses - 4%3B Other Eukaryotes - 2058 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15684019, PMID:15978049, PMID:18574595, PMID:18545667, PMID:18775970, locus:2205145; locus_type=protein_coding
AT1G07960.3	chr1:002467681	0.0	W/2467681-2467794,2468305-2468363,2468452-2468627,2468740-2468831	AT1G07960.3 CDS AT1G07960 ID=AT1G07960.3; Parent=AT1G07960; Name=AT1G07960.3; Note=PDI-like 5-1; curator_summary=Encodes a protein disulfide isomerase-like (PDIL) protein%2C a member of a multigene family within the thioredoxin (TRX) superfamily.; conf_class=2; symbol=PDIL5-1; Alias=ATPDIL5-1, PDI-like 5-1; full_name=PDI-like 5-1; computational_description=PDI-like 5-1 (PDIL5-1)%3B INVOLVED IN: cell redox homeostasis%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335)%2C Thioredoxin-like (InterPro:IPR017936)%2C Thioredoxin domain (InterPro:IPR013766)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B BEST Arabidopsis thaliana protein match is: thioredoxin family protein (TAIR:AT2G47470.1)%3B Has 11046 Blast hits to 9080 proteins in 1903 species: Archae - 38%3B Bacteria - 4054%3B Metazoa - 3042%3B Fungi - 886%3B Plants - 964%3B Viruses - 4%3B Other Eukaryotes - 2058 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15684019, PMID:15978049, PMID:18574595, PMID:18545667, PMID:18775970, locus:2205145; locus_type=protein_coding
AT1G07960.4	chr1:002467681	0.0	W/2467681-2467794,2468305-2468363,2468452-2468627,2468740-2468831	AT1G07960.4 CDS AT1G07960 ID=AT1G07960.4; Parent=AT1G07960; Name=AT1G07960.4; Note=PDI-like 5-1; symbol=PDIL5-1; Alias=ATPDIL5-1, PDI-like 5-1; full_name=PDI-like 5-1; Dbxref=PMID:15684019, PMID:15978049, PMID:18574595, PMID:18545667, PMID:18775970, locus:2205145; curator_summary=Encodes a protein disulfide isomerase-like (PDIL) protein%2C a member of a multigene family within the thioredoxin (TRX) superfamily.; computational_description=PDI-like 5-1 (PDIL5-1)%3B INVOLVED IN: cell redox homeostasis%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335)%2C Thioredoxin-like (InterPro:IPR017936)%2C Thioredoxin domain (InterPro:IPR013766)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B BEST Arabidopsis thaliana protein match is: thioredoxin family protein (TAIR:AT2G47470.1)%3B Has 11046 Blast hits to 9080 proteins in 1903 species: Archae - 38%3B Bacteria - 4054%3B Metazoa - 3042%3B Fungi - 886%3B Plants - 964%3B Viruses - 4%3B Other Eukaryotes - 2058 (source: NCBI BLink).; locus_type=protein_coding
AT1G07970.1	chr1:002469528	0.0	C/2469528-2469668,2469780-2470153,2470232-2470435,2470690-2470888,2471046-2471947,2472041-2472096,2472313-2472518	AT1G07970.1 CDS AT1G07970 ID=AT1G07970.1; Parent=AT1G07970; Name=AT1G07970.1; Note=cytochrome B561%2C amino-terminal protein; conf_class=1; computational_description=CONTAINS InterPro DOMAIN/s: Cytochrome B561-related%2C N-terminal (InterPro:IPR019176)%3B Has 215 Blast hits to 213 proteins in 79 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 131%3B Fungi - 22%3B Plants - 42%3B Viruses - 0%3B Other Eukaryotes - 14 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14576160, locus:2205155; locus_type=protein_coding
AT1TE08050	chr1:002472646	0.0	C/2472646-2473098	AT1TE08050 transposable_element AT1TE08050 ID=AT1TE08050; Name=AT1TE08050; Alias=ATREP1
AT1TE08055	chr1:002473099	0.0	C/2473099-2473131,2473112-2473306	AT1TE08055 transposable_element AT1TE08055 ID=AT1TE08055; Name=AT1TE08055; Alias=ATREP2
AT1TE08060	chr1:002473307	0.0	W/2473307-2473421	AT1TE08060 transposable_element AT1TE08060 ID=AT1TE08060; Name=AT1TE08060; Alias=VANDAL8
AT1G07980.1	chr1:002473523	0.0	C/2473523-2473596,2473684-2473725,2473963-2474047,2474491-2474910	AT1G07980.1 CDS AT1G07980 ID=AT1G07980.1; Parent=AT1G07980; Name=AT1G07980.1; Note=nuclear factor Y%2C subunit C10; conf_class=2; symbol=NF-YC10; full_name=nuclear factor Y%2C subunit C10; computational_description=nuclear factor Y%2C subunit C10 (NF-YC10)%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: intracellular%2C chloroplast%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958)%2C Histone-fold (InterPro:IPR009072)%3B Has 1154 Blast hits to 1151 proteins in 206 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 432%3B Fungi - 306%3B Plants - 324%3B Viruses - 0%3B Other Eukaryotes - 92 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:14576160, PMID:18315867, PMID:25490919, locus:2205170; locus_type=protein_coding
AT1G07980.2	chr1:002473952	0.0	C/2473952-2474047,2474491-2474910	AT1G07980.2 CDS AT1G07980 ID=AT1G07980.2; Parent=AT1G07980; Name=AT1G07980.2; Note=nuclear factor Y%2C subunit C10; symbol=NF-YC10; full_name=nuclear factor Y%2C subunit C10; computational_description=nuclear factor Y%2C subunit C10 (NF-YC10)%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: intracellular%2C chloroplast%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958)%2C Histone-fold (InterPro:IPR009072)%3B Has 1154 Blast hits to 1151 proteins in 206 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 432%3B Fungi - 306%3B Plants - 324%3B Viruses - 0%3B Other Eukaryotes - 92 (source: NCBI BLink).; Dbxref=PMID:11118137, PMID:14576160, PMID:18315867, PMID:25490919, locus:2205170; locus_type=protein_coding
AT1G07985.1	chr1:002475508	0.0	W/2475508-2475942	AT1G07985.1 CDS AT1G07985 ID=AT1G07985.1; Parent=AT1G07985; Name=AT1G07985.1; Note=Expressed protein; conf_class=1; computational_description=Expressed protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:1006230778; locus_type=protein_coding
AT1G07990.1	chr1:002477413	0.0	W/2477413-2477451,2477676-2477779,2477966-2478052,2478186-2478261,2478388-2478462,2478599-2478652,2478979-2479038,2479123-2479239,2479400-2479494,2479590-2479798,2480178-2480275,2480406-2480509,2480597-2480759,2480920-2481042,2481215-2481297,2481580-2481712,2481796-2481825,2481972-2482042,2482211-2482898	AT1G07990.1 CDS AT1G07990 ID=AT1G07990.1; Parent=AT1G07990; Name=AT1G07990.1; Note=SIT4 phosphatase-associated family protein; conf_class=2; computational_description=SIT4 phosphatase-associated family protein%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: SIT4 phosphatase-associated protein (InterPro:IPR007587)%3B BEST Arabidopsis thaliana protein match is: SIT4 phosphatase-associated family protein (TAIR:AT2G28360.1)%3B Has 1048 Blast hits to 891 proteins in 200 species: Archae - 0%3B Bacteria - 31%3B Metazoa - 354%3B Fungi - 329%3B Plants - 109%3B Viruses - 3%3B Other Eukaryotes - 222 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:18775970, locus:2205185; locus_type=protein_coding
AT1G07990.2	chr1:002477413	0.0	W/2477413-2477451,2477676-2477779,2477966-2478052,2478186-2478261,2478388-2478462,2478599-2478652,2478979-2479038,2479123-2479239,2479400-2479494,2479590-2479798,2480178-2480275,2480406-2480509,2480597-2480759,2480920-2481042,2481215-2481297,2481580-2481712,2481796-2481942	AT1G07990.2 CDS AT1G07990 ID=AT1G07990.2; Parent=AT1G07990; Name=AT1G07990.2; Note=SIT4 phosphatase-associated family protein; computational_description=SIT4 phosphatase-associated family protein%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: SIT4 phosphatase-associated protein (InterPro:IPR007587)%3B BEST Arabidopsis thaliana protein match is: SIT4 phosphatase-associated family protein (TAIR:AT2G28360.1)%3B Has 1048 Blast hits to 891 proteins in 200 species: Archae - 0%3B Bacteria - 31%3B Metazoa - 354%3B Fungi - 329%3B Plants - 109%3B Viruses - 3%3B Other Eukaryotes - 222 (source: NCBI BLink).; Dbxref=PMID:14576160, PMID:18775970, locus:2205185; locus_type=protein_coding
AT1G08000.1	chr1:002483460	0.0	C/2483460-2484125,2484304-2484564	AT1G08000.1 CDS AT1G08000 ID=AT1G08000.1; Parent=AT1G08000; Name=AT1G08000.1; Note=GATA transcription factor 10; curator_summary=Encodes a member of the GATA factor family of zinc finger transcription factors.; conf_class=2; symbol=GATA10; full_name=GATA transcription factor 10; computational_description=GATA transcription factor 10 (GATA10)%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B EXPRESSED IN: pollen tube%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C NHR/GATA-type (InterPro:IPR013088)%2C Zinc finger%2C GATA-type (InterPro:IPR000679)%3B BEST Arabidopsis thaliana protein match is: GATA transcription factor 11 (TAIR:AT1G08010.2)%3B Has 1492 Blast hits to 1460 proteins in 163 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 20%3B Fungi - 625%3B Plants - 786%3B Viruses - 0%3B Other Eukaryotes - 61 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:12504119, PMID:15084732, PMID:17208962, PMID:18775970, locus:2205090; locus_type=protein_coding
AT1G08000.2	chr1:002483460	0.0	C/2483460-2484125,2484304-2484564	AT1G08000.2 CDS AT1G08000 ID=AT1G08000.2; Parent=AT1G08000; Name=AT1G08000.2; Note=GATA transcription factor 10; curator_summary=Encodes a member of the GATA factor family of zinc finger transcription factors.; conf_class=2; symbol=GATA10; full_name=GATA transcription factor 10; computational_description=GATA transcription factor 10 (GATA10)%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B EXPRESSED IN: pollen tube%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C NHR/GATA-type (InterPro:IPR013088)%2C Zinc finger%2C GATA-type (InterPro:IPR000679)%3B BEST Arabidopsis thaliana protein match is: GATA transcription factor 11 (TAIR:AT1G08010.2)%3B Has 1492 Blast hits to 1460 proteins in 163 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 20%3B Fungi - 625%3B Plants - 786%3B Viruses - 0%3B Other Eukaryotes - 61 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:12504119, PMID:15084732, PMID:17208962, PMID:18775970, locus:2205090; locus_type=protein_coding
AT1G08005.1	chr1:002485344	0.0	W/2485344-2485511	AT1G08005.1 CDS AT1G08005 ID=AT1G08005.1; Parent=AT1G08005; Name=AT1G08005.1; Note=serine/threonine-protein phosphatase 6 regulatory subunit; conf_class=1; computational_description=BEST Arabidopsis thaliana protein match is: SIT4 phosphatase-associated family protein (TAIR:AT1G07990.1)%3B Has 17 Blast hits to 17 proteins in 3 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 17%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:4010713422; locus_type=protein_coding
AT1G08010.1	chr1:002486202	0.0	C/2486202-2486846,2487136-2487402	AT1G08010.1 CDS AT1G08010 ID=AT1G08010.1; Parent=AT1G08010; Name=AT1G08010.1; Note=GATA transcription factor 11; curator_summary=Encodes a member of the GATA factor family of zinc finger transcription factors.; conf_class=2; symbol=GATA11; full_name=GATA transcription factor 11; computational_description=GATA transcription factor 11 (GATA11)%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C NHR/GATA-type (InterPro:IPR013088)%2C Zinc finger%2C GATA-type (InterPro:IPR000679)%3B BEST Arabidopsis thaliana protein match is: GATA transcription factor 10 (TAIR:AT1G08000.2)%3B Has 1564 Blast hits to 1518 proteins in 176 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 46%3B Fungi - 649%3B Plants - 800%3B Viruses - 0%3B Other Eukaryotes - 69 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:12504119, PMID:15084732, PMID:16262716, PMID:17208962, PMID:19014467, locus:2205100; locus_type=protein_coding
AT1G08010.2	chr1:002486202	0.0	C/2486202-2486846,2487136-2487402	AT1G08010.2 CDS AT1G08010 ID=AT1G08010.2; Parent=AT1G08010; Name=AT1G08010.2; Note=GATA transcription factor 11; curator_summary=Encodes a member of the GATA factor family of zinc finger transcription factors.; conf_class=2; symbol=GATA11; full_name=GATA transcription factor 11; computational_description=GATA transcription factor 11 (GATA11)%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C NHR/GATA-type (InterPro:IPR013088)%2C Zinc finger%2C GATA-type (InterPro:IPR000679)%3B BEST Arabidopsis thaliana protein match is: GATA transcription factor 10 (TAIR:AT1G08000.2)%3B Has 1564 Blast hits to 1518 proteins in 176 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 46%3B Fungi - 649%3B Plants - 800%3B Viruses - 0%3B Other Eukaryotes - 69 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:12504119, PMID:15084732, PMID:16262716, PMID:17208962, PMID:19014467, locus:2205100; locus_type=protein_coding
AT1G08010.3	chr1:002486202	0.0	C/2486202-2486846,2487136-2487402	AT1G08010.3 CDS AT1G08010 ID=AT1G08010.3; Parent=AT1G08010; Name=AT1G08010.3; Note=GATA transcription factor 11; symbol=GATA11; full_name=GATA transcription factor 11; Dbxref=PMID:11118137, PMID:12504119, PMID:15084732, PMID:16262716, PMID:17208962, PMID:19014467, locus:2205100; curator_summary=Encodes a member of the GATA factor family of zinc finger transcription factors.; computational_description=GATA transcription factor 11 (GATA11)%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C NHR/GATA-type (InterPro:IPR013088)%2C Zinc finger%2C GATA-type (InterPro:IPR000679)%3B BEST Arabidopsis thaliana protein match is: GATA transcription factor 10 (TAIR:AT1G08000.2)%3B Has 1564 Blast hits to 1518 proteins in 176 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 46%3B Fungi - 649%3B Plants - 800%3B Viruses - 0%3B Other Eukaryotes - 69 (source: NCBI BLink).; locus_type=protein_coding
AT1G08030.1	chr1:002489575	0.0	C/2489575-2489745,2489824-2489958,2490047-2490166,2490239-2490289,2490377-2490426,2491013-2491157,2491250-2491354,2491434-2491574,2491683-2491968,2492262-2492333,2492419-2492590,2492687-2492741	AT1G08030.1 CDS AT1G08030 ID=AT1G08030.1; Parent=AT1G08030; Name=AT1G08030.1; Note=tyrosylprotein sulfotransferase; curator_summary=Encodes a tyrosylprotein sulfotransferase (TPST). This protein is a 500-aa type I transmembrane protein that shows no sequence similarity to animal TPSTs. Activity confirmed by protein expression in yeast. TPST is expressed throughout the plant body%2C and the highest levels of expression are in the root apical meristem. TPST acts in the auxin pathway to maintain postembryonic root stem cell niche by defining the expression of the PLETHORA stem cell transcription factor genes. A loss-of-function mutant TPST displayed a marked dwarf phenotype accompanied by stunted roots%2C pale green leaves%2C reduction in higher order veins%2C early senescence%2C and a reduced number of flowers and siliques.; conf_class=2; symbol=TPST; Alias=AQC1, active quiescent center1, HPS7, hypersensitive to Pi starvation 7; full_name=tyrosylprotein sulfotransferase; computational_description=tyrosylprotein sulfotransferase (TPST)%3B FUNCTIONS IN: protein-tyrosine sulfotransferase activity%3B INVOLVED IN: carbohydrate biosynthetic process%3B LOCATED IN: Golgi apparatus%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Sulfotransferase (InterPro:IPR005331)%2C Heparan sulphate 6-sulfotransferase (InterPro:IPR010635)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18650403, PMID:18775970, PMID:19666544, PMID:20798316, PMID:19717448, PMID:21045165, PMID:21698171, PMID:22353039, PMID:23062058, PMID:24868033, PMID:25174442, locus:2205135; locus_type=protein_coding
AT1G08030.2	chr1:002489575	0.0	C/2489575-2489745,2489824-2489958,2490047-2490166,2490239-2490289,2490377-2490426,2491013-2491157,2491250-2491354,2491434-2491574,2491683-2491968,2492262-2492333,2492419-2492590,2492687-2492741	AT1G08030.2 CDS AT1G08030 ID=AT1G08030.2; Parent=AT1G08030; Name=AT1G08030.2; Note=tyrosylprotein sulfotransferase; symbol=TPST; Alias=AQC1, active quiescent center1, HPS7, hypersensitive to Pi starvation 7; full_name=tyrosylprotein sulfotransferase; Dbxref=PMID:18650403, PMID:18775970, PMID:19666544, PMID:20798316, PMID:19717448, PMID:21045165, PMID:21698171, PMID:22353039, PMID:23062058, PMID:24868033, PMID:25174442, locus:2205135; curator_summary=Encodes a tyrosylprotein sulfotransferase (TPST). This protein is a 500-aa type I transmembrane protein that shows no sequence similarity to animal TPSTs. Activity confirmed by protein expression in yeast. TPST is expressed throughout the plant body%2C and the highest levels of expression are in the root apical meristem. TPST acts in the auxin pathway to maintain postembryonic root stem cell niche by defining the expression of the PLETHORA stem cell transcription factor genes. A loss-of-function mutant TPST displayed a marked dwarf phenotype accompanied by stunted roots%2C pale green leaves%2C reduction in higher order veins%2C early senescence%2C and a reduced number of flowers and siliques.; computational_description=tyrosylprotein sulfotransferase (TPST)%3B FUNCTIONS IN: protein-tyrosine sulfotransferase activity%3B INVOLVED IN: carbohydrate biosynthetic process%3B LOCATED IN: Golgi apparatus%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Sulfotransferase (InterPro:IPR005331)%2C Heparan sulphate 6-sulfotransferase (InterPro:IPR010635)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; locus_type=protein_coding
AT1G08035.1	chr1:002494772	0.0	W/2494772-2495149	AT1G08035.1 CDS AT1G08035 ID=AT1G08035.1; Parent=AT1G08035; Name=AT1G08035.1; Note=hypothetical protein; conf_class=4; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G28330.1)%3B Has 10 Blast hits to 10 proteins in 3 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 10%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=***; Dbxref=locus:504956111; locus_type=protein_coding
AT1G08035.2	chr1:002494814	0.0	W/2494814-2495149	AT1G08035.2 CDS AT1G08035 ID=AT1G08035.2; Parent=AT1G08035; Name=AT1G08035.2; Note=hypothetical protein; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G28330.1)%3B Has 10 Blast hits to 10 proteins in 3 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 10%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=locus:504956111; locus_type=protein_coding
AT1G08035.3	chr1:002494814	0.0	W/2494814-2495149	AT1G08035.3 CDS AT1G08035 ID=AT1G08035.3; Parent=AT1G08035; Name=AT1G08035.3; Note=hypothetical protein; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G28330.1)%3B Has 10 Blast hits to 10 proteins in 3 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 10%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=locus:504956111; locus_type=protein_coding
AT1G08040.1	chr1:002495507	0.0	C/2495507-2495602,2495694-2495729,2495821-2495895,2496007-2496060,2496230-2496296,2496399-2496455,2496539-2496652,2496724-2496825,2496930-2497045,2497132-2497215,2497329-2497433,2497562-2497672,2497754-2497865,2497954-2497973	AT1G08040.1 CDS AT1G08040 ID=AT1G08040.1; Parent=AT1G08040; Name=AT1G08040.1; Note=trimethylguanosine synthase (DUF707); conf_class=2; computational_description=Protein of unknown function (DUF707)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT2G28310.3)%3B Has 328 Blast hits to 327 proteins in 28 species: Archae - 0%3B Bacteria - 17%3B Metazoa - 0%3B Fungi - 0%3B Plants - 305%3B Viruses - 0%3B Other Eukaryotes - 6 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15295017, PMID:16626458, PMID:18775970, locus:2205140; locus_type=protein_coding
AT1G08040.2	chr1:002495507	0.0	C/2495507-2495602,2495694-2495729,2495821-2495895,2496007-2496060,2496230-2496296,2496399-2496455,2496539-2496652,2496724-2496825,2496930-2497045,2497132-2497215,2497329-2497433,2497562-2497672,2497754-2497865,2497954-2497973	AT1G08040.2 CDS AT1G08040 ID=AT1G08040.2; Parent=AT1G08040; Name=AT1G08040.2; Note=trimethylguanosine synthase (DUF707); conf_class=2; computational_description=Protein of unknown function (DUF707)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT2G28310.3)%3B Has 328 Blast hits to 327 proteins in 28 species: Archae - 0%3B Bacteria - 17%3B Metazoa - 0%3B Fungi - 0%3B Plants - 305%3B Viruses - 0%3B Other Eukaryotes - 6 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15295017, PMID:16626458, PMID:18775970, locus:2205140; locus_type=protein_coding
AT1G08040.3	chr1:002495507	0.0	C/2495507-2495602,2495694-2495729,2495821-2495895,2496007-2496060,2496230-2496296,2496399-2496455,2496539-2496652,2496724-2496825,2496930-2497045,2497132-2497215,2497329-2497433,2497562-2497672,2497754-2497853,2497954-2497973	AT1G08040.3 CDS AT1G08040 ID=AT1G08040.3; Parent=AT1G08040; Name=AT1G08040.3; Note=trimethylguanosine synthase (DUF707); computational_description=Protein of unknown function (DUF707)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT2G28310.3)%3B Has 328 Blast hits to 327 proteins in 28 species: Archae - 0%3B Bacteria - 17%3B Metazoa - 0%3B Fungi - 0%3B Plants - 305%3B Viruses - 0%3B Other Eukaryotes - 6 (source: NCBI BLink).; Dbxref=PMID:15295017, PMID:16626458, PMID:18775970, locus:2205140; locus_type=protein_coding
AT1G08040.4	chr1:002495507	0.0	C/2495507-2495602,2495694-2495729,2495821-2495895,2496007-2496060,2496230-2496296,2496399-2496455,2496539-2496652,2496724-2496825,2496930-2497045,2497132-2497215,2497329-2497433,2497562-2497672,2497754-2497865,2497954-2497973	AT1G08040.4 CDS AT1G08040 ID=AT1G08040.4; Parent=AT1G08040; Name=AT1G08040.4; Note=trimethylguanosine synthase (DUF707); Dbxref=PMID:15295017, PMID:16626458, PMID:18775970, locus:2205140; computational_description=Protein of unknown function (DUF707)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT2G28310.3)%3B Has 328 Blast hits to 327 proteins in 28 species: Archae - 0%3B Bacteria - 17%3B Metazoa - 0%3B Fungi - 0%3B Plants - 305%3B Viruses - 0%3B Other Eukaryotes - 6 (source: NCBI BLink).; locus_type=protein_coding
AT1G08050.1	chr1:002499088	0.0	C/2499088-2500815,2501114-2501311	AT1G08050.1 CDS AT1G08050 ID=AT1G08050.1; Parent=AT1G08050; Name=AT1G08050.1; Note=Zinc finger (C3HC4-type RING finger) family protein; conf_class=2; computational_description=Zinc finger (C3HC4-type RING finger) family protein%3B FUNCTIONS IN: ubiquitin-protein ligase activity%2C zinc ion binding%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: 4 anthesis%2C LP.10 ten leaves visible%2C petal differentiation and expansion stage%2C LP.08 eight leaves visible%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%2C von Willebrand factor%2C type A (InterPro:IPR002035)%3B BEST Arabidopsis thaliana protein match is: Zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G60710.1)%3B Has 3591 Blast hits to 3577 proteins in 633 species: Archae - 55%3B Bacteria - 1268%3B Metazoa - 812%3B Fungi - 224%3B Plants - 715%3B Viruses - 5%3B Other Eukaryotes - 512 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11983057, PMID:14576160, PMID:15258262, PMID:16183833, PMID:18053238, PMID:18650403, PMID:18775970, PMID:25720653, locus:2205160; locus_type=protein_coding
AT1G08060.1	chr1:002501981	0.0	C/2501981-2502504,2502578-2502788,2502871-2503070,2503160-2503337,2503471-2503635,2503719-2503874,2504018-2504173,2504309-2505706,2505907-2506011,2506572-2506813,2506894-2507815,2508109-2508282,2508676-2508921,2509037-2509115,2509239-2510488	AT1G08060.1 CDS AT1G08060 ID=AT1G08060.1; Parent=AT1G08060; Name=AT1G08060.1; Note=ATP-dependent helicase family protein; curator_summary=Encodes a transcriptional silencer.; conf_class=1; symbol=MOM; Alias=MOM1, MORPHEUS MOLECULE 1; full_name=MORPHEUS MOLECULE; computational_description=MORPHEUS MOLECULE (MOM)%3B INVOLVED IN: chromatin silencing%3B LOCATED IN: nucleus%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 7 growth stages%3B BEST Arabidopsis thaliana protein match is: chromatin remodeling 4 (TAIR:AT5G44800.1)%3B Has 8505 Blast hits to 7857 proteins in 726 species: Archae - 6%3B Bacteria - 999%3B Metazoa - 3217%3B Fungi - 2019%3B Plants - 785%3B Viruses - 95%3B Other Eukaryotes - 1384 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:10999407, PMID:10821279, PMID:9697415, PMID:12370435, PMID:15165191, PMID:17025159, PMID:17082821, PMID:17082818, PMID:18775970, PMID:18725928, PMID:19910926, PMID:20010696, PMID:20404545, PMID:20693667, PMID:20826701, PMID:21070421, PMID:21464619, PMID:22346760, PMID:22676624, PMID:23313553, PMID:24255109, PMID:24799676, PMID:25329561, locus:2205205; locus_type=protein_coding
AT1G08060.2	chr1:002501981	0.0	C/2501981-2502504,2502578-2502788,2502871-2503070,2503160-2503337,2503471-2503635,2503719-2503874,2504018-2504173,2504309-2505706,2505907-2506011,2506572-2506813,2506894-2507815,2508109-2508282,2508676-2508921,2509037-2509115,2509239-2510488	AT1G08060.2 CDS AT1G08060 ID=AT1G08060.2; Parent=AT1G08060; Name=AT1G08060.2; Note=ATP-dependent helicase family protein; curator_summary=Encodes a transcriptional silencer.; conf_class=3; symbol=MOM; Alias=MOM1, MORPHEUS MOLECULE 1; full_name=MORPHEUS MOLECULE; computational_description=MORPHEUS MOLECULE (MOM)%3B INVOLVED IN: chromatin silencing%3B LOCATED IN: nucleus%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 7 growth stages%3B BEST Arabidopsis thaliana protein match is: chromatin remodeling 4 (TAIR:AT5G44800.1)%3B Has 8505 Blast hits to 7857 proteins in 726 species: Archae - 6%3B Bacteria - 999%3B Metazoa - 3217%3B Fungi - 2019%3B Plants - 785%3B Viruses - 95%3B Other Eukaryotes - 1384 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10999407, PMID:10821279, PMID:9697415, PMID:12370435, PMID:15165191, PMID:17025159, PMID:17082821, PMID:17082818, PMID:18775970, PMID:18725928, PMID:19910926, PMID:20010696, PMID:20404545, PMID:20693667, PMID:20826701, PMID:21070421, PMID:21464619, PMID:22346760, PMID:22676624, PMID:23313553, PMID:24255109, PMID:24799676, PMID:25329561, locus:2205205; locus_type=protein_coding
AT1G08060.3	chr1:002501981	0.0	C/2501981-2502504,2502578-2502788,2502871-2503070,2503160-2503337,2503471-2503635,2503719-2503874,2504018-2504173,2504309-2505706,2505907-2506011,2506572-2506813,2506894-2507818,2508109-2508282,2508676-2508921,2509037-2509115,2509239-2510488	AT1G08060.3 CDS AT1G08060 ID=AT1G08060.3; Parent=AT1G08060; Name=AT1G08060.3; Note=ATP-dependent helicase family protein; symbol=MOM; Alias=MOM1, MORPHEUS MOLECULE 1; full_name=MORPHEUS MOLECULE; curator_summary=Encodes a transcriptional silencer.; computational_description=MORPHEUS MOLECULE (MOM)%3B INVOLVED IN: chromatin silencing%3B LOCATED IN: nucleus%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 7 growth stages%3B BEST Arabidopsis thaliana protein match is: chromatin remodeling 4 (TAIR:AT5G44800.1)%3B Has 8505 Blast hits to 7857 proteins in 726 species: Archae - 6%3B Bacteria - 999%3B Metazoa - 3217%3B Fungi - 2019%3B Plants - 785%3B Viruses - 95%3B Other Eukaryotes - 1384 (source: NCBI BLink).; Dbxref=PMID:10999407, PMID:10821279, PMID:9697415, PMID:12370435, PMID:15165191, PMID:17025159, PMID:17082821, PMID:17082818, PMID:18775970, PMID:18725928, PMID:19910926, PMID:20010696, PMID:20404545, PMID:20693667, PMID:20826701, PMID:21070421, PMID:21464619, PMID:22346760, PMID:22676624, PMID:23313553, PMID:24255109, PMID:24799676, PMID:25329561, locus:2205205; locus_type=protein_coding
AT1G08065.1	chr1:002511788	0.0	C/2511788-2511877,2512004-2512057,2512151-2512318,2512432-2512534,2512690-2512802,2512889-2513106,2513254-2513341	AT1G08065.1 CDS AT1G08065 ID=AT1G08065.1; Parent=AT1G08065; Name=AT1G08065.1; Note=alpha carbonic anhydrase 5; conf_class=2; symbol=ACA5; Alias=ATACA5, ALPHA CARBONIC ANHYDRASE 5; full_name=alpha carbonic anhydrase 5; computational_description=alpha carbonic anhydrase 5 (ACA5)%3B FUNCTIONS IN: carbonate dehydratase activity%2C zinc ion binding%3B INVOLVED IN: one-carbon metabolic process%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: petal%2C leaf whorl%2C sepal%2C flower%3B EXPRESSED DURING: 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Carbonic anhydrase%2C alpha-class%2C catalytic domain (InterPro:IPR001148)%2C Carbonic anhydrase%2C CAH1-like (InterPro:IPR018340)%3B BEST Arabidopsis thaliana protein match is: alpha carbonic anhydrase 7 (TAIR:AT1G08080.1)%3B Has 3351 Blast hits to 3338 proteins in 543 species: Archae - 0%3B Bacteria - 710%3B Metazoa - 2051%3B Fungi - 82%3B Plants - 328%3B Viruses - 7%3B Other Eukaryotes - 173 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17407539, PMID:18433503, locus:2827099; locus_type=protein_coding
AT1TE08190	chr1:002513507	0.0	W/2513507-2514452	AT1TE08190 transposable_element AT1TE08190 ID=AT1TE08190; Name=AT1TE08190; Alias=HELITRONY3
AT1G08070.1	chr1:002514374	0.0	C/2514374-2516599	AT1G08070.1 CDS AT1G08070 ID=AT1G08070.1; Parent=AT1G08070; Name=AT1G08070.1; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; curator_summary=Encodes a chloroplast RNA editing factor.; conf_class=4; symbol=OTP82; Alias=EMB3102, EMBRYO DEFECTIVE 3102; full_name=ORGANELLE TRANSCRIPT PROCESSING 82; computational_description=ORGANELLE TRANSCRIPT PROCESSING 82 (OTP82)%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1)%3B Has 45065 Blast hits to 15003 proteins in 296 species: Archae - 0%3B Bacteria - 12%3B Metazoa - 221%3B Fungi - 219%3B Plants - 43815%3B Viruses - 0%3B Other Eukaryotes - 798 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:19934379, PMID:20736450, PMID:25649437, locus:2205200; locus_type=protein_coding
AT1G08070.2	chr1:002514374	0.0	C/2514374-2516287	AT1G08070.2 CDS AT1G08070 ID=AT1G08070.2; Parent=AT1G08070; Name=AT1G08070.2; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; symbol=OTP82; Alias=EMB3102, EMBRYO DEFECTIVE 3102; full_name=ORGANELLE TRANSCRIPT PROCESSING 82; curator_summary=Encodes a chloroplast RNA editing factor.; computational_description=ORGANELLE TRANSCRIPT PROCESSING 82 (OTP82)%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1)%3B Has 45065 Blast hits to 15003 proteins in 296 species: Archae - 0%3B Bacteria - 12%3B Metazoa - 221%3B Fungi - 219%3B Plants - 43815%3B Viruses - 0%3B Other Eukaryotes - 798 (source: NCBI BLink).; Dbxref=PMID:19934379, PMID:20736450, PMID:25649437, locus:2205200; locus_type=protein_coding
AT1G08080.1	chr1:002517022	0.0	C/2517022-2517096,2517214-2517267,2517351-2517518,2517628-2517730,2517826-2517932,2518154-2518371,2518444-2518546	AT1G08080.1 CDS AT1G08080 ID=AT1G08080.1; Parent=AT1G08080; Name=AT1G08080.1; Note=alpha carbonic anhydrase 7; conf_class=1; symbol=ACA7; Alias=ATACA7, A. THALIANA ALPHA CARBONIC ANHYDRASE 7; full_name=alpha carbonic anhydrase 7; computational_description=alpha carbonic anhydrase 7 (ACA7)%3B FUNCTIONS IN: carbonate dehydratase activity%2C zinc ion binding%3B INVOLVED IN: one-carbon metabolic process%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: Carbonic anhydrase%2C alpha-class%2C catalytic domain (InterPro:IPR001148)%2C Carbonic anhydrase%2C CAH1-like (InterPro:IPR018340)%2C Carbonic anhydrase%2C alpha-class%2C conserved site (InterPro:IPR018338)%3B BEST Arabidopsis thaliana protein match is: alpha carbonic anhydrase 5 (TAIR:AT1G08065.1)%3B Has 3434 Blast hits to 3405 proteins in 557 species: Archae - 0%3B Bacteria - 714%3B Metazoa - 2114%3B Fungi - 83%3B Plants - 330%3B Viruses - 6%3B Other Eukaryotes - 187 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:17407539, PMID:20736450, locus:2205175; locus_type=protein_coding
AT1TE08220	chr1:002522239	0.0	C/2522239-2522640	AT1TE08220 transposable_element AT1TE08220 ID=AT1TE08220; Name=AT1TE08220; Alias=ATREP3
AT1G08090.1	chr1:002524139	0.0	W/2524139-2524948,2525049-2525164,2525254-2525920	AT1G08090.1 CDS AT1G08090 ID=AT1G08090.1; Parent=AT1G08090; Name=AT1G08090.1; Note=nitrate transporter 2:1; curator_summary=High-affinity nitrate transporter. Up-regulated by nitrate. Functions as a repressor of lateral root initiation independently of nitrate uptake.; conf_class=2; symbol=NRT2:1; Alias=ACH1, ATNRT2.1, NITRATE TRANSPORTER 2.1, ATNRT2:1, nitrate transporter 2:1, LIN1, LATERAL ROOT INITIATION 1, NRT2.1, NITRATE TRANSPORTER 2.1, NRT2%3B1AT, NRT2, NITRATE TRANSPORTER 2; full_name=nitrate transporter 2:1; computational_description=nitrate transporter 2:1 (NRT2:1)%3B CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701)%2C Major facilitator superfamily%2C general substrate transporter (InterPro:IPR016196)%3B BEST Arabidopsis thaliana protein match is: nitrate transporter 2.2 (TAIR:AT1G08100.1)%3B Has 5150 Blast hits to 5022 proteins in 1376 species: Archae - 45%3B Bacteria - 4402%3B Metazoa - 22%3B Fungi - 274%3B Plants - 247%3B Viruses - 0%3B Other Eukaryotes - 160 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10417701, PMID:10205909, PMID:9951738, PMID:8799195, PMID:11289304, PMID:11706172, PMID:11165253, PMID:11389756, PMID:11553754, PMID:11912228, PMID:11912225, PMID:12068127, PMID:12668777, PMID:12956537, PMID:12953122, PMID:15107992, PMID:15319483, PMID:15347784, PMID:16160849, PMID:16157886, PMID:16415212, PMID:16415211, PMID:16998085, PMID:16980702, PMID:17012411, PMID:17085507, PMID:17519352, PMID:17481610, PMID:17583518, PMID:17578866, PMID:17573350, PMID:17540716, PMID:17897408, PMID:18304979, PMID:18467466, PMID:18826430, PMID:18713378, PMID:19704673, PMID:19732351, PMID:20448103, PMID:20444232, PMID:20561257, PMID:21151904, PMID:21788519, PMID:21852757, PMID:22158760, PMID:22227893, PMID:22432443, PMID:22580578, PMID:22880003, PMID:23154505, PMID:23305042, PMID:23414092, PMID:23398541, PMID:23763619, PMID:24272701, PMID:24532451, PMID:24506441, PMID:24642706, PMID:25065551, PMID:24739434, PMID:25474587, PMID:25596127, PMID:25681328, locus:2205190; locus_type=protein_coding
AT1TE08230	chr1:002526624	0.0	C/2526624-2526756	AT1TE08230 transposable_element AT1TE08230 ID=AT1TE08230; Name=AT1TE08230; Alias=ATHILA7A
AT1G08100.1	chr1:002527268	0.0	C/2527268-2527916,2528055-2528170,2528275-2529078	AT1G08100.1 CDS AT1G08100 ID=AT1G08100.1; Parent=AT1G08100; Name=AT1G08100.1; Note=nitrate transporter 2.2; curator_summary=Encodes a high-affinity nitrate transporter.; conf_class=1; symbol=NRT2.2; Alias=ACH2, ATNRT2.2, NITRATE TRANSPORTER 2.2, NRT2%3B2AT; full_name=nitrate transporter 2.2; computational_description=nitrate transporter 2.2 (NRT2.2)%3B CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701)%2C Major facilitator superfamily%2C general substrate transporter (InterPro:IPR016196)%3B BEST Arabidopsis thaliana protein match is: nitrate transporter 2:1 (TAIR:AT1G08090.1)%3B Has 5331 Blast hits to 5172 proteins in 1398 species: Archae - 41%3B Bacteria - 4556%3B Metazoa - 25%3B Fungi - 295%3B Plants - 255%3B Viruses - 0%3B Other Eukaryotes - 159 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:10205909, PMID:11165253, PMID:11553754, PMID:11912225, PMID:12668777, PMID:16415211, PMID:17085507, PMID:17481610, PMID:18826430, PMID:20444232, PMID:22158760, PMID:22227893, PMID:22432443, PMID:22880003, PMID:25065551, PMID:25039575, PMID:25596127, locus:2205195; locus_type=protein_coding
AT1TE08240	chr1:002531451	0.0	C/2531451-2533895,2534472-2534781	AT1TE08240 transposable_element AT1TE08240 ID=AT1TE08240; Name=AT1TE08240; Alias=TAG2
AT1G08105.1	chr1:002531695	0.0	C/2531695-2534786	AT1G08105.1 CDS AT1G08105 ID=AT1G08105.1; Parent=AT1G08105; Name=AT1G08105.1; index=1; computational_description=hAT-like transposase family (hobo/Ac/Tam3)%2C has a 1.0e-298 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana); Dbxref=locus:2827104; Note=transposable_element_gene; locus_type=transposable_element_gene
AT1TE08245	chr1:002533899	0.0	C/2533899-2533947	AT1TE08245 transposable_element AT1TE08245 ID=AT1TE08245; Name=AT1TE08245; Alias=ATHAT1
AT1G08110.4	chr1:002535463	0.0	W/2535463-2535585,2535675-2535794,2536396-2536457,2536567-2536627,2536877-2536956,2537039-2537109,2537330-2537419,2537530-2537630	AT1G08110.4 CDS AT1G08110 ID=AT1G08110.4; Parent=AT1G08110; Name=AT1G08110.4; Note=lactoylglutathione lyase family protein / glyoxalase I family protein; conf_class=2; computational_description=lactoylglutathione lyase family protein / glyoxalase I family protein%3B FUNCTIONS IN: calmodulin binding%2C lactoylglutathione lyase activity%3B INVOLVED IN: response to cadmium ion%2C carbohydrate metabolic process%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Glyoxalase I (InterPro:IPR004361)%2C Glyoxalase I%2C conserved site (InterPro:IPR018146)%2C Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360)%3B BEST Arabidopsis thaliana protein match is: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (TAIR:AT1G67280.1)%3B Has 4789 Blast hits to 4500 proteins in 1507 species: Archae - 34%3B Bacteria - 2875%3B Metazoa - 164%3B Fungi - 363%3B Plants - 266%3B Viruses - 0%3B Other Eukaryotes - 1087 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11782485, PMID:15618427, PMID:16502469, PMID:16911220, PMID:17828791, PMID:18791196, PMID:21213008, locus:2205110; locus_type=protein_coding
AT1G08110.1	chr1:002535702	0.0	W/2535702-2535794,2536396-2536457,2536567-2536627,2536877-2536956,2537039-2537109,2537330-2537419,2537530-2537630	AT1G08110.1 CDS AT1G08110 ID=AT1G08110.1; Parent=AT1G08110; Name=AT1G08110.1; Note=lactoylglutathione lyase family protein / glyoxalase I family protein; conf_class=2; computational_description=lactoylglutathione lyase family protein / glyoxalase I family protein%3B FUNCTIONS IN: calmodulin binding%2C lactoylglutathione lyase activity%3B INVOLVED IN: response to cadmium ion%2C carbohydrate metabolic process%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Glyoxalase I (InterPro:IPR004361)%2C Glyoxalase I%2C conserved site (InterPro:IPR018146)%2C Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360)%3B BEST Arabidopsis thaliana protein match is: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (TAIR:AT1G67280.1)%3B Has 4789 Blast hits to 4500 proteins in 1507 species: Archae - 34%3B Bacteria - 2875%3B Metazoa - 164%3B Fungi - 363%3B Plants - 266%3B Viruses - 0%3B Other Eukaryotes - 1087 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11782485, PMID:15618427, PMID:16502469, PMID:16911220, PMID:17828791, PMID:18791196, PMID:21213008, locus:2205110; locus_type=protein_coding
AT1G08110.2	chr1:002535702	0.0	W/2535702-2535794,2536396-2536457,2536567-2536627,2536877-2536956,2537039-2537109,2537330-2537419,2537530-2537630	AT1G08110.2 CDS AT1G08110 ID=AT1G08110.2; Parent=AT1G08110; Name=AT1G08110.2; Note=lactoylglutathione lyase family protein / glyoxalase I family protein; conf_class=2; computational_description=lactoylglutathione lyase family protein / glyoxalase I family protein%3B FUNCTIONS IN: calmodulin binding%2C lactoylglutathione lyase activity%3B INVOLVED IN: response to cadmium ion%2C carbohydrate metabolic process%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Glyoxalase I (InterPro:IPR004361)%2C Glyoxalase I%2C conserved site (InterPro:IPR018146)%2C Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360)%3B BEST Arabidopsis thaliana protein match is: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (TAIR:AT1G67280.1)%3B Has 4789 Blast hits to 4500 proteins in 1507 species: Archae - 34%3B Bacteria - 2875%3B Metazoa - 164%3B Fungi - 363%3B Plants - 266%3B Viruses - 0%3B Other Eukaryotes - 1087 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11782485, PMID:15618427, PMID:16502469, PMID:16911220, PMID:17828791, PMID:18791196, PMID:21213008, locus:2205110; locus_type=protein_coding
AT1G08110.3	chr1:002535702	0.0	W/2535702-2535794,2536396-2536457,2536567-2536627,2536877-2536956,2537039-2537109,2537330-2537419,2537530-2537630	AT1G08110.3 CDS AT1G08110 ID=AT1G08110.3; Parent=AT1G08110; Name=AT1G08110.3; Note=lactoylglutathione lyase family protein / glyoxalase I family protein; conf_class=2; computational_description=lactoylglutathione lyase family protein / glyoxalase I family protein%3B FUNCTIONS IN: calmodulin binding%2C lactoylglutathione lyase activity%3B INVOLVED IN: response to cadmium ion%2C carbohydrate metabolic process%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Glyoxalase I (InterPro:IPR004361)%2C Glyoxalase I%2C conserved site (InterPro:IPR018146)%2C Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360)%3B BEST Arabidopsis thaliana protein match is: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (TAIR:AT1G67280.1)%3B Has 4789 Blast hits to 4500 proteins in 1507 species: Archae - 34%3B Bacteria - 2875%3B Metazoa - 164%3B Fungi - 363%3B Plants - 266%3B Viruses - 0%3B Other Eukaryotes - 1087 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11782485, PMID:15618427, PMID:16502469, PMID:16911220, PMID:17828791, PMID:18791196, PMID:21213008, locus:2205110; locus_type=protein_coding
AT1G08115.1	chr1:002538074	0.0	C/2538074-2538238	AT1G08115.1 snRNA AT1G08115 ID=AT1G08115.1; Parent=AT1G08115; curator_summary=U1A small nuclear RNA; computational_description=gi|22293581|emb|AJ505685.1|ATH505685 Arabidopsis putative U1a snRNA (U1asnRNA gene)%2C 5' end incomplete%2C At5g05684; Dbxref=PMID:15575968, locus:1005716661; Name=AT1G08115.1; Note=U1; symbol=U1-5; Alias=U1.5; locus_type=small_nuclear_rna
AT1G04643.1	chr1:002538664	0.0	C/2538664-2539548	AT1G04643.1 antisense_lncRNA AT1G04643 ID=AT1G04643.1; Parent=AT1G04643; Name=AT1G04643.1; description=Natural antisense transcript overlaps with AT1G08120; Note=Natural antisense transcript overlaps with AT1G08120; locus_type=antisense_long_noncoding_rna
AT1G04643.2	chr1:002538664	0.0	C/2538664-2539548	AT1G04643.2 antisense_lncRNA AT1G04643 ID=AT1G04643.2; Parent=AT1G04643; Name=AT1G04643.2; description=Natural antisense transcript overlaps with AT1G08120; Note=Natural antisense transcript overlaps with AT1G08120; locus_type=antisense_long_noncoding_rna
AT1G08120.1	chr1:002538678	0.0	W/2538678-2538941	AT1G08120.1 CDS AT1G08120 ID=AT1G08120.1; Parent=AT1G08120; Name=AT1G08120.1; Note=TP53-regulating kinase-like protein; conf_class=1; computational_description=BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G26110.1)%3B Has 235 Blast hits to 235 proteins in 96 species: Archae - 21%3B Bacteria - 0%3B Metazoa - 117%3B Fungi - 8%3B Plants - 47%3B Viruses - 0%3B Other Eukaryotes - 42 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:2205125; locus_type=protein_coding
AT1G08125.1	chr1:002539748	0.0	C/2539748-2539759,2539852-2540163,2540237-2540329,2540410-2540484,2540588-2540685,2540881-2540997,2541116-2541209,2541656-2541721,2541796-2541862,2542217-2542230	AT1G08125.1 CDS AT1G08125 ID=AT1G08125.1; Parent=AT1G08125; Name=AT1G08125.1; Note=S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; conf_class=3; computational_description=S-adenosyl-L-methionine-dependent methyltransferases superfamily protein%3B CONTAINS InterPro DOMAIN/s: Methyltransferase-16%2C putative (InterPro:IPR019410)%3B BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT1G73320.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:20736450, locus:1006230779; locus_type=protein_coding
AT1G08125.2	chr1:002539748	0.0	C/2539748-2539759,2539852-2540163,2540237-2540329,2540410-2540484,2540588-2540685,2540881-2540997,2541116-2541209,2541656-2541721,2541796-2541862,2542013-2542038,2542124-2542132	AT1G08125.2 CDS AT1G08125 ID=AT1G08125.2; Parent=AT1G08125; Name=AT1G08125.2; Note=S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; conf_class=6; computational_description=S-adenosyl-L-methionine-dependent methyltransferases superfamily protein%3B CONTAINS InterPro DOMAIN/s: Methyltransferase-16%2C putative (InterPro:IPR019410)%3B BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT1G73320.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:20736450, locus:1006230779; locus_type=protein_coding
AT1G08125.3	chr1:002539748	0.0	C/2539748-2539759,2539852-2540163,2540237-2540329,2540410-2540484,2540972-2540997,2541116-2541209,2541656-2541721,2541796-2541862,2542013-2542038,2542124-2542183	AT1G08125.3 CDS AT1G08125 ID=AT1G08125.3; Parent=AT1G08125; Name=AT1G08125.3; Note=S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; conf_class=6; computational_description=S-adenosyl-L-methionine-dependent methyltransferases superfamily protein%3B CONTAINS InterPro DOMAIN/s: Methyltransferase-16%2C putative (InterPro:IPR019410)%3B BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT1G73320.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:20736450, locus:1006230779; locus_type=protein_coding
AT1G08125.4	chr1:002539748	0.0	C/2539748-2539759,2539852-2540163,2540237-2540329,2540410-2540484,2540972-2540997,2541116-2541209,2541656-2541676	AT1G08125.4 CDS AT1G08125 ID=AT1G08125.4; Parent=AT1G08125; Name=AT1G08125.4; Note=S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; computational_description=S-adenosyl-L-methionine-dependent methyltransferases superfamily protein%3B CONTAINS InterPro DOMAIN/s: Methyltransferase-16%2C putative (InterPro:IPR019410)%3B BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT1G73320.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).; Dbxref=PMID:20736450, locus:1006230779; locus_type=protein_coding
AT1G08130.1	chr1:002542913	0.0	C/2542913-2542981,2543097-2543174,2543277-2543354,2543460-2543516,2543595-2543668,2543769-2543840,2543920-2543981,2544060-2544161,2544745-2544857,2544964-2545095,2545554-2545641,2545720-2545814,2545909-2546139,2546370-2546486,2546563-2546664,2546793-2546909,2547030-2547815	AT1G08130.1 CDS AT1G08130 ID=AT1G08130.1; Parent=AT1G08130; Name=AT1G08130.1; Note=DNA ligase 1; curator_summary=Encodes the Arabidopsis DNA ligase 1 that provides the major DNA ligase activity in cells and plays a key role in both DNA replication and excision repair pathways. Indispensable for cell viability. AtLIG1 expresses one major and two minor mRNA transcripts differing only in the length of the 5' untranslated leader sequences preceding a common ORF. Translation from the first in-frame start codon produces an AtLIG1 isoform that is targeted exclusively to the mitochondria. Translation initiation from the second in-frame start codon produces an AtLIG1 isoform targeted only to the nucleus.; conf_class=2; symbol=LIG1; Alias=ATLIG1, DNA ligase 1; full_name=DNA ligase 1; computational_description=DNA ligase 1 (LIG1)%3B FUNCTIONS IN: DNA binding%2C DNA ligase (ATP) activity%2C ATP binding%3B INVOLVED IN: DNA repair%2C DNA replication%2C DNA recombination%3B LOCATED IN: mitochondrion%2C nucleus%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Nucleic acid-binding%2C OB-fold (InterPro:IPR012340)%2C DNA ligase%2C N-terminal (InterPro:IPR012308)%2C ATP dependent DNA ligase%2C central (InterPro:IPR012310)%2C ATP dependent DNA ligase%2C C-terminal (InterPro:IPR012309)%2C ATP-dependent DNA ligase (InterPro:IPR000977)%2C ATP-dependent DNA ligase%2C conserved site (InterPro:IPR016059)%3B BEST Arabidopsis thaliana protein match is: ATP-dependent DNA ligase (TAIR:AT1G49250.1)%3B Has 3556 Blast hits to 3521 proteins in 879 species: Archae - 298%3B Bacteria - 1538%3B Metazoa - 375%3B Fungi - 434%3B Plants - 112%3B Viruses - 159%3B Other Eukaryotes - 640 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:16126853, PMID:16790030, PMID:17556508, PMID:18775970, PMID:19558640, PMID:20023162, PMID:21781197, locus:2199953; locus_type=protein_coding
AT1G08135.1	chr1:002548819	0.0	C/2548819-2549250,2549338-2549991,2550085-2551101,2551186-2551473	AT1G08135.1 CDS AT1G08135 ID=AT1G08135.1; Parent=AT1G08135; Name=AT1G08135.1; Note=cation/H+ exchanger 6B; conf_class=9; symbol=CHX6B; Alias=ATCHX6B; full_name=cation/H+ exchanger 6B; computational_description=cation/H+ exchanger 6B (CHX6B)%3B FUNCTIONS IN: monovalent cation:hydrogen antiporter activity%3B INVOLVED IN: cation transport%3B LOCATED IN: integral to membrane%3B EXPRESSED IN: 14 plant structures%3B EXPRESSED DURING: 4 anthesis%2C F mature embryo stage%2C 4 leaf senescence stage%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153)%3B BEST Arabidopsis thaliana protein match is: Cation/hydrogen exchanger family protein (TAIR:AT2G28170.1)%3B Has 1422 Blast hits to 1406 proteins in 439 species: Archae - 64%3B Bacteria - 709%3B Metazoa - 0%3B Fungi - 111%3B Plants - 510%3B Viruses - 0%3B Other Eukaryotes - 28 (source: NCBI BLink).; conf_rating=*; Dbxref=PMID:11500563, PMID:15347787, PMID:16607029, locus:1005716662; locus_type=protein_coding
AT1G08140.1	chr1:002552206	0.0	C/2552206-2552700,2552924-2553586,2553681-2554700,2554796-2555074	AT1G08140.1 CDS AT1G08140 ID=AT1G08140.1; Parent=AT1G08140; Name=AT1G08140.1; Note=cation/H+ exchanger 6A; curator_summary=member of Putative Na+/H+ antiporter family; conf_class=1; symbol=CHX6A; Alias=ATCHX6A, cation/H+ exchanger 6A; full_name=cation/H+ exchanger 6A; computational_description=cation/H+ exchanger 6A (CHX6A)%3B FUNCTIONS IN: monovalent cation:hydrogen antiporter activity%2C sodium:hydrogen antiporter activity%3B INVOLVED IN: cation transport%3B LOCATED IN: integral to membrane%3B EXPRESSED IN: male gametophyte%3B CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153)%3B BEST Arabidopsis thaliana protein match is: Cation/hydrogen exchanger family protein (TAIR:AT2G28170.1)%3B Has 1486 Blast hits to 1465 proteins in 477 species: Archae - 56%3B Bacteria - 742%3B Metazoa - 0%3B Fungi - 110%3B Plants - 524%3B Viruses - 0%3B Other Eukaryotes - 54 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11500563, PMID:14666423, PMID:15347787, PMID:15341627, PMID:16607029, PMID:20032078, PMID:20736450, locus:2205150; locus_type=protein_coding
AT1G08150.1	chr1:002556343	0.0	C/2556343-2556807,2556907-2557566,2557671-2558690,2558772-2559074	AT1G08150.1 CDS AT1G08150 ID=AT1G08150.1; Parent=AT1G08150; Name=AT1G08150.1; Note=Cation/hydrogen exchanger family protein; curator_summary=member of Putative Na+/H+ antiporter family; conf_class=6; symbol=ATCHX5; computational_description=ATCHX5%3B FUNCTIONS IN: monovalent cation:hydrogen antiporter activity%2C sodium:hydrogen antiporter activity%3B INVOLVED IN: cation transport%3B LOCATED IN: integral to membrane%3B EXPRESSED IN: male gametophyte%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%3B CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153)%3B BEST Arabidopsis thaliana protein match is: cation/H+ exchanger 6A (TAIR:AT1G08140.1)%3B Has 2700 Blast hits to 2678 proteins in 819 species: Archae - 128%3B Bacteria - 1881%3B Metazoa - 0%3B Fungi - 113%3B Plants - 529%3B Viruses - 0%3B Other Eukaryotes - 49 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:11500563, PMID:15347787, PMID:18775970, PMID:20736450, locus:2205165; locus_type=protein_coding
AT1G08160.1	chr1:002559672	0.0	C/2559672-2560337	AT1G08160.1 CDS AT1G08160 ID=AT1G08160.1; Parent=AT1G08160; Name=AT1G08160.1; Note=Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; conf_class=1; computational_description=Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family%3B CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein%2C group 2 (InterPro:IPR004864)%3B BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT5G22870.1)%3B Has 611 Blast hits to 611 proteins in 23 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 611%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:20736450, locus:2205180; locus_type=protein_coding
AT1G08165.1	chr1:002561913	0.0	C/2561913-2561963,2562056-2562148	AT1G08165.1 CDS AT1G08165 ID=AT1G08165.1; Parent=AT1G08165; Name=AT1G08165.1; Note=hypothetical protein; conf_class=2; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:4515102507; locus_type=protein_coding
AT1G08170.1	chr1:002562941	0.0	C/2562941-2563672	AT1G08170.1 CDS AT1G08170 ID=AT1G08170.1; Parent=AT1G08170; Name=AT1G08170.1; Note=Histone superfamily protein; conf_class=1; computational_description=Histone superfamily protein%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: nucleosome assembly%3B LOCATED IN: nucleus%2C nucleosome%3B EXPRESSED IN: sperm cell%2C male gametophyte%2C flower%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%3B CONTAINS InterPro DOMAIN/s: Histone H2B (InterPro:IPR000558)%2C Histone-fold (InterPro:IPR009072)%2C Histone core (InterPro:IPR007125)%3B BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT2G28720.1)%3B Has 3412 Blast hits to 3396 proteins in 350 species: Archae - 0%3B Bacteria - 51%3B Metazoa - 2306%3B Fungi - 230%3B Plants - 467%3B Viruses - 0%3B Other Eukaryotes - 358 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16489130, PMID:18775970, PMID:20736450, locus:2199988; locus_type=protein_coding
AT1G08180.1	chr1:002564741	0.0	C/2564741-2565076	AT1G08180.1 CDS AT1G08180 ID=AT1G08180.1; Parent=AT1G08180; Name=AT1G08180.1; Note=cyclin-dependent kinase inhibitor; conf_class=1; computational_description=unknown protein%3B Has 53 Blast hits to 53 proteins in 9 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1%3B Fungi - 0%3B Plants - 52%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:17098811, PMID:17599908, PMID:20706207, locus:2199998; locus_type=protein_coding
AT1G08190.1	chr1:002567652	0.0	W/2567652-2567921,2568161-2568433,2568512-2568691,2568788-2569045,2569148-2569280,2569369-2569459,2569556-2569658,2570019-2570122,2570208-2570301,2570473-2570628,2570708-2570770,2570878-2570943,2571265-2571492,2571584-2571661,2571750-2571869,2571998-2572078,2572192-2572277,2572496-2572577,2572666-2573142	AT1G08190.1 CDS AT1G08190 ID=AT1G08190.1; Parent=AT1G08190; Name=AT1G08190.1; Note=vacuolar protein sorting 41; curator_summary=Might be involved in protein sorting to the vacuole.; conf_class=4; symbol=VPS41; Alias=ATVAM2, ATVPS41, VACUOLAR PROTEIN SORTING 41, VAM2, ZIP2, ZIGZAG SUPPRESSOR 2; full_name=vacuolar protein sorting 41; computational_description=vacuolar protein sorting 41 (VPS41)%3B FUNCTIONS IN: binding%2C nucleotide binding%2C zinc ion binding%3B INVOLVED IN: gravitropism%2C protein targeting to vacuole%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C WD40 repeat (InterPro:IPR001680)%2C Vacuolar protein sorting-associated protein 41 (InterPro:IPR016902)%2C WD40 repeat-like-containing domain (InterPro:IPR011046)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C Armadillo-type fold (InterPro:IPR016024)%2C WD40 repeat%2C subgroup (InterPro:IPR019781)%2C Clathrin%2C heavy chain/VPS%2C 7-fold repeat (InterPro:IPR000547)%3B Has 13288 Blast hits to 4251 proteins in 360 species: Archae - 4%3B Bacteria - 340%3B Metazoa - 7814%3B Fungi - 1141%3B Plants - 584%3B Viruses - 346%3B Other Eukaryotes - 3059 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:12589039, PMID:14988481, PMID:15047898, PMID:15644464, PMID:17346352, PMID:18650403, PMID:18775970, PMID:19884248, PMID:20181752, PMID:20117084, PMID:20736450, locus:2200008; locus_type=protein_coding
AT1G08200.1	chr1:002574259	0.0	C/2574259-2574371,2574458-2574593,2574687-2574779,2574876-2574977,2575067-2575200,2575282-2575396,2575862-2575969,2576094-2576186,2576334-2576609	AT1G08200.1 CDS AT1G08200 ID=AT1G08200.1; Parent=AT1G08200; Name=AT1G08200.1; Note=UDP-D-apiose/UDP-D-xylose synthase 2; curator_summary=Encodes a putative UDP-D-apiose/UPD-D-xylose synthetase.; conf_class=3; symbol=AXS2; full_name=UDP-D-apiose/UDP-D-xylose synthase 2; computational_description=UDP-D-apiose/UDP-D-xylose synthase 2 (AXS2)%3B FUNCTIONS IN: UDP-glucuronate decarboxylase activity%3B INVOLVED IN: nucleotide-sugar biosynthetic process%3B LOCATED IN: apoplast%2C cytoplasm%3B EXPRESSED IN: fruit%2C guard cell%2C cultured cell%2C leaf%3B EXPRESSED DURING: seedling growth%3B CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509)%2C NAD(P)-binding domain (InterPro:IPR016040)%3B BEST Arabidopsis thaliana protein match is: UDP-D-apiose/UDP-D-xylose synthase 1 (TAIR:AT2G27860.1)%3B Has 18414 Blast hits to 18403 proteins in 2616 species: Archae - 518%3B Bacteria - 11662%3B Metazoa - 253%3B Fungi - 80%3B Plants - 1043%3B Viruses - 12%3B Other Eukaryotes - 4846 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12969423, PMID:16055689, PMID:17329564, PMID:18650403, locus:2200018; locus_type=protein_coding
AT1G08210.1	chr1:002577119	0.0	C/2577119-2577279,2577357-2577428,2577510-2577576,2577864-2577957,2578040-2578113,2578315-2578477,2578865-2579092,2579434-2579678,2579819-2579948,2580337-2580581	AT1G08210.1 CDS AT1G08210 ID=AT1G08210.1; Parent=AT1G08210; Name=AT1G08210.1; Note=Eukaryotic aspartyl protease family protein; conf_class=2; computational_description=Eukaryotic aspartyl protease family protein%3B FUNCTIONS IN: aspartic-type endopeptidase activity%3B INVOLVED IN: proteolysis%3B LOCATED IN: anchored to membrane%2C plant-type cell wall%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109)%2C Peptidase aspartic%2C catalytic (InterPro:IPR009007)%2C Peptidase A1 (InterPro:IPR001461)%3B BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT5G22850.1)%3B Has 5025 Blast hits to 5004 proteins in 412 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1724%3B Fungi - 965%3B Plants - 2068%3B Viruses - 0%3B Other Eukaryotes - 268 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12068095, PMID:12805588, PMID:14697270, PMID:16287169, locus:2200023; locus_type=protein_coding
AT1G08210.2	chr1:002577119	0.0	C/2577119-2577279,2577357-2577576,2577864-2577957,2578040-2578113,2578315-2578477,2578865-2579092,2579434-2579678,2579819-2579948,2580337-2580581	AT1G08210.2 CDS AT1G08210 ID=AT1G08210.2; Parent=AT1G08210; Name=AT1G08210.2; Note=Eukaryotic aspartyl protease family protein; computational_description=Eukaryotic aspartyl protease family protein%3B FUNCTIONS IN: aspartic-type endopeptidase activity%3B INVOLVED IN: proteolysis%3B LOCATED IN: anchored to membrane%2C plant-type cell wall%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109)%2C Peptidase aspartic%2C catalytic (InterPro:IPR009007)%2C Peptidase A1 (InterPro:IPR001461)%3B BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT5G22850.1)%3B Has 5025 Blast hits to 5004 proteins in 412 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1724%3B Fungi - 965%3B Plants - 2068%3B Viruses - 0%3B Other Eukaryotes - 268 (source: NCBI BLink).; Dbxref=PMID:12068095, PMID:12805588, PMID:14697270, PMID:16287169, locus:2200023; locus_type=protein_coding
AT1G08210.3	chr1:002577119	0.0	C/2577119-2577279,2577357-2577428,2577510-2577576,2577864-2577957,2578040-2578113,2578315-2578477,2578865-2579092,2579434-2579678,2579819-2579948,2580337-2580725	AT1G08210.3 CDS AT1G08210 ID=AT1G08210.3; Parent=AT1G08210; Name=AT1G08210.3; Note=Eukaryotic aspartyl protease family protein; computational_description=Eukaryotic aspartyl protease family protein%3B FUNCTIONS IN: aspartic-type endopeptidase activity%3B INVOLVED IN: proteolysis%3B LOCATED IN: anchored to membrane%2C plant-type cell wall%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109)%2C Peptidase aspartic%2C catalytic (InterPro:IPR009007)%2C Peptidase A1 (InterPro:IPR001461)%3B BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT5G22850.1)%3B Has 5025 Blast hits to 5004 proteins in 412 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1724%3B Fungi - 965%3B Plants - 2068%3B Viruses - 0%3B Other Eukaryotes - 268 (source: NCBI BLink).; Dbxref=PMID:12068095, PMID:12805588, PMID:14697270, PMID:16287169, locus:2200023; locus_type=protein_coding
AT1G08210.4	chr1:002577119	0.0	C/2577119-2577279,2577357-2577428,2577510-2577576,2577864-2577957,2578040-2578113,2578315-2578477,2578865-2579092,2579434-2579678,2579819-2579948,2580337-2580683	AT1G08210.4 CDS AT1G08210 ID=AT1G08210.4; Parent=AT1G08210; Name=AT1G08210.4; Note=Eukaryotic aspartyl protease family protein; computational_description=Eukaryotic aspartyl protease family protein%3B FUNCTIONS IN: aspartic-type endopeptidase activity%3B INVOLVED IN: proteolysis%3B LOCATED IN: anchored to membrane%2C plant-type cell wall%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109)%2C Peptidase aspartic%2C catalytic (InterPro:IPR009007)%2C Peptidase A1 (InterPro:IPR001461)%3B BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT5G22850.1)%3B Has 5025 Blast hits to 5004 proteins in 412 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1724%3B Fungi - 965%3B Plants - 2068%3B Viruses - 0%3B Other Eukaryotes - 268 (source: NCBI BLink).; Dbxref=PMID:12068095, PMID:12805588, PMID:14697270, PMID:16287169, locus:2200023; locus_type=protein_coding
AT1G08220.1	chr1:002581574	0.0	C/2581574-2581691,2581788-2581963,2582087-2582158,2582370-2582558,2582797-2582860,2582998-2583038,2583124-2583288	AT1G08220.1 CDS AT1G08220 ID=AT1G08220.1; Parent=AT1G08220; Name=AT1G08220.1; Note=ATPase complex subunit; conf_class=2; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: mitochondrial proton-transporting ATP synthase complex assembly%3B LOCATED IN: mitochondrial inner membrane%3B EXPRESSED IN: 18 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: ATPase assembly factor ATP10%2C mitochondria (InterPro:IPR007849)%3B Has 168 Blast hits to 168 proteins in 86 species: Archae - 6%3B Bacteria - 0%3B Metazoa - 2%3B Fungi - 107%3B Plants - 30%3B Viruses - 0%3B Other Eukaryotes - 23 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, PMID:20736450, PMID:21908688, locus:2200028; locus_type=protein_coding
AT1G08220.2	chr1:002581574	0.0	C/2581574-2581691,2581788-2581963,2582087-2582158,2582370-2582558,2582797-2582850	AT1G08220.2 CDS AT1G08220 ID=AT1G08220.2; Parent=AT1G08220; Name=AT1G08220.2; Note=ATPase complex subunit; conf_class=1; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: mitochondrial proton-transporting ATP synthase complex assembly%3B LOCATED IN: mitochondrial inner membrane%3B EXPRESSED IN: 18 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: ATPase assembly factor ATP10%2C mitochondria (InterPro:IPR007849)%3B Has 168 Blast hits to 168 proteins in 86 species: Archae - 6%3B Bacteria - 0%3B Metazoa - 2%3B Fungi - 107%3B Plants - 30%3B Viruses - 0%3B Other Eukaryotes - 23 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:18775970, PMID:20736450, PMID:21908688, locus:2200028; locus_type=protein_coding
AT1G08230.2	chr1:002583715	0.0	C/2583715-2584095,2584203-2584442,2584580-2584710,2584800-2585084,2586289-2586519,2586613-2586700	AT1G08230.2 CDS AT1G08230 ID=AT1G08230.2; Parent=AT1G08230; Name=AT1G08230.2; Note=Transmembrane amino acid transporter family protein; curator_summary=Codes for a H+-driven%2C high affinity gamma-aminobutyric acid (GABA) transporter. Localized at the plasma membrane. In planta%2C AtGAT1 expression was highest in flowers and under conditions of elevated GABA concentrations such as wounding or senescence.; conf_class=1; computational_description=Transmembrane amino acid transporter family protein%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 10 growth stages%3B CONTAINS InterPro DOMAIN/s: Amino acid transporter%2C transmembrane (InterPro:IPR013057)%3B BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT5G41800.1)%3B Has 2686 Blast hits to 2681 proteins in 218 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 558%3B Fungi - 296%3B Plants - 1464%3B Viruses - 0%3B Other Eukaryotes - 368 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15361141, PMID:15341629, PMID:15618414, PMID:15546358, PMID:16258011, PMID:20736450, locus:2199978; locus_type=protein_coding
AT1G08230.3	chr1:002583715	0.0	C/2583715-2584095,2584203-2584442,2584580-2584710,2584800-2585084,2586289-2586307	AT1G08230.3 CDS AT1G08230 ID=AT1G08230.3; Parent=AT1G08230; Name=AT1G08230.3; Note=Transmembrane amino acid transporter family protein; curator_summary=Codes for a H+-driven%2C high affinity gamma-aminobutyric acid (GABA) transporter. Localized at the plasma membrane. In planta%2C AtGAT1 expression was highest in flowers and under conditions of elevated GABA concentrations such as wounding or senescence.; computational_description=Transmembrane amino acid transporter family protein%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 10 growth stages%3B CONTAINS InterPro DOMAIN/s: Amino acid transporter%2C transmembrane (InterPro:IPR013057)%3B BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT5G41800.1)%3B Has 2686 Blast hits to 2681 proteins in 218 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 558%3B Fungi - 296%3B Plants - 1464%3B Viruses - 0%3B Other Eukaryotes - 368 (source: NCBI BLink).; Dbxref=PMID:15361141, PMID:15341629, PMID:15618414, PMID:15546358, PMID:16258011, PMID:20736450, locus:2199978; locus_type=protein_coding
AT1G08230.4	chr1:002583715	0.0	C/2583715-2584095,2584203-2584442,2584580-2584710,2584800-2585046	AT1G08230.4 CDS AT1G08230 ID=AT1G08230.4; Parent=AT1G08230; Name=AT1G08230.4; Note=Transmembrane amino acid transporter family protein; curator_summary=Codes for a H+-driven%2C high affinity gamma-aminobutyric acid (GABA) transporter. Localized at the plasma membrane. In planta%2C AtGAT1 expression was highest in flowers and under conditions of elevated GABA concentrations such as wounding or senescence.; computational_description=Transmembrane amino acid transporter family protein%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 10 growth stages%3B CONTAINS InterPro DOMAIN/s: Amino acid transporter%2C transmembrane (InterPro:IPR013057)%3B BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT5G41800.1)%3B Has 2686 Blast hits to 2681 proteins in 218 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 558%3B Fungi - 296%3B Plants - 1464%3B Viruses - 0%3B Other Eukaryotes - 368 (source: NCBI BLink).; Dbxref=PMID:15361141, PMID:15341629, PMID:15618414, PMID:15546358, PMID:16258011, PMID:20736450, locus:2199978; locus_type=protein_coding
AT1G08230.5	chr1:002583715	0.0	C/2583715-2584095,2584203-2584442,2584580-2584710,2584800-2585046	AT1G08230.5 CDS AT1G08230 ID=AT1G08230.5; Parent=AT1G08230; Name=AT1G08230.5; Note=Transmembrane amino acid transporter family protein; curator_summary=Codes for a H+-driven%2C high affinity gamma-aminobutyric acid (GABA) transporter. Localized at the plasma membrane. In planta%2C AtGAT1 expression was highest in flowers and under conditions of elevated GABA concentrations such as wounding or senescence.; computational_description=Transmembrane amino acid transporter family protein%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 10 growth stages%3B CONTAINS InterPro DOMAIN/s: Amino acid transporter%2C transmembrane (InterPro:IPR013057)%3B BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT5G41800.1)%3B Has 2686 Blast hits to 2681 proteins in 218 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 558%3B Fungi - 296%3B Plants - 1464%3B Viruses - 0%3B Other Eukaryotes - 368 (source: NCBI BLink).; Dbxref=PMID:15361141, PMID:15341629, PMID:15618414, PMID:15546358, PMID:16258011, PMID:20736450, locus:2199978; locus_type=protein_coding
AT1G08230.6	chr1:002583715	0.0	C/2583715-2584095,2584203-2584442,2584580-2584710,2584800-2585046	AT1G08230.6 CDS AT1G08230 ID=AT1G08230.6; Parent=AT1G08230; Name=AT1G08230.6; Note=Transmembrane amino acid transporter family protein; curator_summary=Codes for a H+-driven%2C high affinity gamma-aminobutyric acid (GABA) transporter. Localized at the plasma membrane. In planta%2C AtGAT1 expression was highest in flowers and under conditions of elevated GABA concentrations such as wounding or senescence.; computational_description=Transmembrane amino acid transporter family protein%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 10 growth stages%3B CONTAINS InterPro DOMAIN/s: Amino acid transporter%2C transmembrane (InterPro:IPR013057)%3B BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT5G41800.1)%3B Has 2686 Blast hits to 2681 proteins in 218 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 558%3B Fungi - 296%3B Plants - 1464%3B Viruses - 0%3B Other Eukaryotes - 368 (source: NCBI BLink).; Dbxref=PMID:15361141, PMID:15341629, PMID:15618414, PMID:15546358, PMID:16258011, PMID:20736450, locus:2199978; locus_type=protein_coding
AT1TE08410	chr1:002586790	0.0	C/2586790-2586819	AT1TE08410 transposable_element AT1TE08410 ID=AT1TE08410; Name=AT1TE08410; Alias=ATREP15
AT1TE08415	chr1:002586820	0.0	C/2586820-2587142	AT1TE08415 transposable_element AT1TE08415 ID=AT1TE08415; Name=AT1TE08415; Alias=HELITRONY1D
AT1TE08420	chr1:002587143	0.0	C/2587143-2588427	AT1TE08420 transposable_element AT1TE08420 ID=AT1TE08420; Name=AT1TE08420; Alias=ATREP2
AT1TE08425	chr1:002588428	0.0	C/2588428-2588452	AT1TE08425 transposable_element AT1TE08425 ID=AT1TE08425; Name=AT1TE08425; Alias=ATREP2A
AT1TE08430	chr1:002588453	0.0	C/2588453-2588505	AT1TE08430 transposable_element AT1TE08430 ID=AT1TE08430; Name=AT1TE08430; Alias=ATREP2
AT1G08240.1	chr1:002588525	0.0	W/2588525-2588596	AT1G08240.1 tRNA AT1G08240 ID=AT1G08240.1; Parent=AT1G08240; Note=tRNA-Gly; computational_description=tRNA-Gly (anticodon: TCC); Dbxref=PMID:8980477, PMID:23066098, PMID:8980477, locus:3692532; Name=AT1G08240.1; locus_type=pre_trna
AT1G08250.1	chr1:002588994	0.0	C/2588994-2590235	AT1G08250.1 CDS AT1G08250 ID=AT1G08250.1; Parent=AT1G08250; Name=AT1G08250.1; Note=arogenate dehydratase 6; curator_summary=Encodes a plastid-localized arogenate dehydratase involved in phenylalanine biosynthesis. Although this enzyme has sequence similarity to prephenate dehydratases%2C it is 98 times more active with arogenate than prephenate in enzymatic assays.; conf_class=1; symbol=ADT6; Alias=AtADT6, Arabidopsis thaliana arogenate dehydratase 6; full_name=arogenate dehydratase 6; computational_description=arogenate dehydratase 6 (ADT6)%3B FUNCTIONS IN: arogenate dehydratase activity%2C prephenate dehydratase activity%3B INVOLVED IN: L-phenylalanine biosynthetic process%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Prephenate dehydratase (InterPro:IPR001086)%2C Prephenate dehydratase%2C conserved site (InterPro:IPR018528)%3B BEST Arabidopsis thaliana protein match is: prephenate dehydratase 1 (TAIR:AT2G27820.1)%3B Has 7065 Blast hits to 7063 proteins in 2215 species: Archae - 179%3B Bacteria - 3948%3B Metazoa - 2%3B Fungi - 121%3B Plants - 264%3B Viruses - 0%3B Other Eukaryotes - 2551 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14576160, PMID:15918878, PMID:15923328, PMID:16278345, PMID:17726025, PMID:18375600, PMID:19136569, PMID:20736450, PMID:21388819, PMID:22311980, locus:2199963; locus_type=protein_coding
AT1G08260.1	chr1:002590944	0.0	W/2590944-2591102,2591317-2591382,2591505-2591564,2591661-2591756,2592182-2592342,2592499-2592587,2592665-2592882,2593253-2593339,2593423-2593557,2594093-2594215,2594326-2594409,2594744-2594908,2594993-2595169,2595430-2595543,2595966-2596070,2596267-2596385,2596475-2596619,2596694-2596788,2596944-2597049,2597132-2597211,2597308-2597484,2597689-2597773,2597919-2597999,2598083-2598226,2598769-2598864,2599010-2599210,2599631-2599685,2599765-2599907,2599997-2600394,2600538-2600667,2600749-2600946,2601023-2601097,2601605-2601795,2602097-2602277,2602358-2602422,2602759-2602891,2602993-2603094,2603180-2603263,2603515-2603589,2603718-2603777,2603849-2604111,2604186-2604234,2604533-2604693,2604792-2604858,2605178-2605279,2605394-2605513,2605601-2605789,2606079-2606185,2606523-2606892	AT1G08260.1 CDS AT1G08260 ID=AT1G08260.1; Parent=AT1G08260; Name=AT1G08260.1; Note=DNA polymerase epsilon catalytic subunit; curator_summary=Similar to POL2A%2C DNA polymerase epsilon catalytic subunit. Essential for Arabidopsis growth. Null homozygotes are embryo lethal%2C partial loss of function alleles show embryo patterning defects such as root pole displacement. Delayed progression through cell cycle results in embryos with smaller numbers of larger cells.; conf_class=2; symbol=TIL1; Alias=ABO4, ABA OVERLY SENSITIVE 4, EMB142, EMBRYO DEFECTIVE 142, EMB2284, EMBRYO DEFECTIVE 2284, EMB529, EMBRYO DEFECTIVE 529, ESD7, EARLY IN SHORT DAYS 7, POL2A; full_name=TILTED 1; computational_description=TILTED 1 (TIL1)%3B FUNCTIONS IN: DNA-directed DNA polymerase activity%2C DNA binding%2C nucleotide binding%2C zinc ion binding%2C nucleic acid binding%3B INVOLVED IN: positive regulation of S phase of mitotic cell cycle%2C negative regulation of long-day photoperiodism%2C flowering%2C embryo development ending in seed dormancy%3B LOCATED IN: apoplast%2C epsilon DNA polymerase complex%3B EXPRESSED IN: 19 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: DNA polymerase%2C family B (InterPro:IPR022762)%2C DNA-directed DNA polymerase%2C family B%2C exonuclease domain (InterPro:IPR006133)%2C Domain of unknown function DUF1744 (InterPro:IPR013697)%2C Polynucleotidyl transferase%2C ribonuclease H fold (InterPro:IPR012337)%2C DNA-directed DNA polymerase%2C family B%2C conserved region (InterPro:IPR006134)%3B BEST Arabidopsis thaliana protein match is: DNA polymerase epsilon catalytic subunit (TAIR:AT2G27120.1)%3B Has 2011 Blast hits to 1700 proteins in 652 species: Archae - 331%3B Bacteria - 603%3B Metazoa - 305%3B Fungi - 291%3B Plants - 83%3B Viruses - 58%3B Other Eukaryotes - 340 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9294189, PMID:12175016, PMID:12969430, PMID:15960803, PMID:16212602, PMID:16278345, PMID:17227549, PMID:17556508, PMID:19244142, PMID:19812694, PMID:19948787, PMID:19947980, PMID:24053948, locus:2199973; locus_type=protein_coding
AT1G08260.2	chr1:002590944	0.0	W/2590944-2591102,2591317-2591382,2591505-2591564,2591661-2591756,2592182-2592342,2592499-2592587,2592665-2592882,2593253-2593339,2593423-2593557,2594093-2594215,2594326-2594409,2594744-2594908,2594993-2595169,2595430-2595543,2595966-2596070,2596267-2596385,2596475-2596619,2596694-2596788,2596944-2597049,2597132-2597211,2597308-2597484,2597689-2597773,2597919-2597999,2598083-2598226,2598769-2598864,2599010-2599210,2599631-2599685,2599765-2599907,2599997-2600394,2600538-2600667,2600749-2600946,2601023-2601097,2601605-2601795,2602097-2602277,2602358-2602422,2602759-2602891,2602993-2603094,2603180-2603263,2603515-2603589,2603718-2603777,2603849-2604111,2604186-2604234,2604533-2604693,2604792-2604858,2605178-2605279,2605394-2605513,2605601-2605789,2606079-2606414	AT1G08260.2 CDS AT1G08260 ID=AT1G08260.2; Parent=AT1G08260; Name=AT1G08260.2; Note=DNA polymerase epsilon catalytic subunit; symbol=TIL1; Alias=ABO4, ABA OVERLY SENSITIVE 4, EMB142, EMBRYO DEFECTIVE 142, EMB2284, EMBRYO DEFECTIVE 2284, EMB529, EMBRYO DEFECTIVE 529, ESD7, EARLY IN SHORT DAYS 7, POL2A; full_name=TILTED 1; curator_summary=Similar to POL2A%2C DNA polymerase epsilon catalytic subunit. Essential for Arabidopsis growth. Null homozygotes are embryo lethal%2C partial loss of function alleles show embryo patterning defects such as root pole displacement. Delayed progression through cell cycle results in embryos with smaller numbers of larger cells.; computational_description=TILTED 1 (TIL1)%3B FUNCTIONS IN: DNA-directed DNA polymerase activity%2C DNA binding%2C nucleotide binding%2C zinc ion binding%2C nucleic acid binding%3B INVOLVED IN: positive regulation of S phase of mitotic cell cycle%2C negative regulation of long-day photoperiodism%2C flowering%2C embryo development ending in seed dormancy%3B LOCATED IN: apoplast%2C epsilon DNA polymerase complex%3B EXPRESSED IN: 19 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: DNA polymerase%2C family B (InterPro:IPR022762)%2C DNA-directed DNA polymerase%2C family B%2C exonuclease domain (InterPro:IPR006133)%2C Domain of unknown function DUF1744 (InterPro:IPR013697)%2C Polynucleotidyl transferase%2C ribonuclease H fold (InterPro:IPR012337)%2C DNA-directed DNA polymerase%2C family B%2C conserved region (InterPro:IPR006134)%3B BEST Arabidopsis thaliana protein match is: DNA polymerase epsilon catalytic subunit (TAIR:AT2G27120.1)%3B Has 2011 Blast hits to 1700 proteins in 652 species: Archae - 331%3B Bacteria - 603%3B Metazoa - 305%3B Fungi - 291%3B Plants - 83%3B Viruses - 58%3B Other Eukaryotes - 340 (source: NCBI BLink).; Dbxref=PMID:9294189, PMID:12175016, PMID:12969430, PMID:15960803, PMID:16212602, PMID:16278345, PMID:17227549, PMID:17556508, PMID:19244142, PMID:19812694, PMID:19948787, PMID:19947980, PMID:24053948, locus:2199973; locus_type=protein_coding
AT1G08270.2	chr1:002606848	0.0	C/2606848-2606885,2606977-2607337	AT1G08270.2 CDS AT1G08270 ID=AT1G08270.2; Parent=AT1G08270; Name=AT1G08270.2; Note=vacuolar protein sorting-associated protein; conf_class=1; computational_description=CONTAINS InterPro DOMAIN/s: MIT (InterPro:IPR007330)%3B BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT2G27600.1)%3B Has 1133 Blast hits to 1133 proteins in 252 species: Archae - 47%3B Bacteria - 0%3B Metazoa - 540%3B Fungi - 145%3B Plants - 223%3B Viruses - 0%3B Other Eukaryotes - 178 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15960803, PMID:18772308, locus:2199983; locus_type=protein_coding
AT1G08270.1	chr1:002606957	0.0	C/2606957-2607337	AT1G08270.1 CDS AT1G08270 ID=AT1G08270.1; Parent=AT1G08270; Name=AT1G08270.1; Note=vacuolar protein sorting-associated protein; conf_class=1; computational_description=CONTAINS InterPro DOMAIN/s: MIT (InterPro:IPR007330)%3B BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT2G27600.1)%3B Has 1133 Blast hits to 1133 proteins in 252 species: Archae - 47%3B Bacteria - 0%3B Metazoa - 540%3B Fungi - 145%3B Plants - 223%3B Viruses - 0%3B Other Eukaryotes - 178 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15960803, PMID:18772308, locus:2199983; locus_type=protein_coding
AT1G08280.1	chr1:002608408	0.0	W/2608408-2609604	AT1G08280.1 CDS AT1G08280 ID=AT1G08280.1; Parent=AT1G08280; Name=AT1G08280.1; Note=Glycosyltransferase family 29 (sialyltransferase) family protein; curator_summary=Encodes a glycosyltransferase (GT) GALT29A%2C which belongs to the Carbohydrate Active Enzyme family GT29. GALT29A co-expresses with other arabinogalactan GTs%2C GALT31A and GLCAT14A. The recombinant GALT29A expressed in Nicotiana benthamiana demonstrated a galactosyltransferase activity%2C transferring galactose from UDP-galactose to a mixture of various oligosaccharides derived from arabinogalactan proteins.; conf_class=1; Alias=GALT29A, glycosyltransferase 29A; computational_description=Glycosyltransferase family 29 (sialyltransferase) family protein%3B FUNCTIONS IN: sialyltransferase activity%3B INVOLVED IN: protein amino acid glycosylation%3B LOCATED IN: endomembrane system%2C integral to Golgi membrane%2C membrane%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Sialyltransferase (InterPro:IPR012163)%2C Glycosyl transferase%2C family 29 (InterPro:IPR001675)%3B Has 2035 Blast hits to 2021 proteins in 100 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1803%3B Fungi - 0%3B Plants - 152%3B Viruses - 18%3B Other Eukaryotes - 62 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:18252844, PMID:20738727, PMID:20736450, PMID:24693939, locus:2199993; locus_type=protein_coding
AT1G08290.1	chr1:002610680	0.0	C/2610680-2611105,2612593-2613180	AT1G08290.1 CDS AT1G08290 ID=AT1G08290.1; Parent=AT1G08290; Name=AT1G08290.1; Note=WIP domain protein 3; conf_class=2; symbol=WIP3; full_name=WIP domain protein 3; computational_description=WIP domain protein 3 (WIP3)%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C C2H2-like (InterPro:IPR015880)%2C Zinc finger%2C C2H2-type (InterPro:IPR007087)%3B BEST Arabidopsis thaliana protein match is: WIP domain protein 5 (TAIR:AT1G51220.1)%3B Has 40394 Blast hits to 17903 proteins in 213 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 38493%3B Fungi - 119%3B Plants - 685%3B Viruses - 0%3B Other Eukaryotes - 1097 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:11782451, PMID:15236668, PMID:20541552, PMID:20736450, locus:2200003; locus_type=protein_coding
AT1TE08510	chr1:002611952	0.0	C/2611952-2612481	AT1TE08510 transposable_element AT1TE08510 ID=AT1TE08510; Name=AT1TE08510; Alias=BRODYAGA1A
AT1G08300.1	chr1:002614774	0.0	W/2614774-2614904,2615003-2615426,2615518-2615855,2616035-2616548,2616699-2616812,2617757-2618350,2618615-2618652,2618736-2618823	AT1G08300.1 CDS AT1G08300 ID=AT1G08300.1; Parent=AT1G08300; Name=AT1G08300.1; Note=no vein-like protein; conf_class=6; symbol=NVL; full_name=NO VEIN-LIKE; computational_description=NO VEIN-LIKE (NVL)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B BEST Arabidopsis thaliana protein match is: Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase family protein (TAIR:AT4G13750.1)%3B Has 169 Blast hits to 140 proteins in 57 species: Archae - 2%3B Bacteria - 5%3B Metazoa - 24%3B Fungi - 0%3B Plants - 82%3B Viruses - 0%3B Other Eukaryotes - 56 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:19880797, PMID:20736450, PMID:22372667, locus:2200013; locus_type=protein_coding
AT1G08300.2	chr1:002615034	0.0	W/2615034-2615426,2615518-2615855,2616035-2616548,2616699-2616812,2617757-2618368	AT1G08300.2 CDS AT1G08300 ID=AT1G08300.2; Parent=AT1G08300; Name=AT1G08300.2; Note=no vein-like protein; symbol=NVL; full_name=NO VEIN-LIKE; computational_description=NO VEIN-LIKE (NVL)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B BEST Arabidopsis thaliana protein match is: Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase family protein (TAIR:AT4G13750.1)%3B Has 169 Blast hits to 140 proteins in 57 species: Archae - 2%3B Bacteria - 5%3B Metazoa - 24%3B Fungi - 0%3B Plants - 82%3B Viruses - 0%3B Other Eukaryotes - 56 (source: NCBI BLink).; Dbxref=PMID:19880797, PMID:20736450, PMID:22372667, locus:2200013; locus_type=protein_coding
AT1G08300.3	chr1:002615034	0.0	W/2615034-2615426,2615518-2615855,2616035-2616548,2617757-2618368	AT1G08300.3 CDS AT1G08300 ID=AT1G08300.3; Parent=AT1G08300; Name=AT1G08300.3; Note=no vein-like protein; symbol=NVL; full_name=NO VEIN-LIKE; computational_description=NO VEIN-LIKE (NVL)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B BEST Arabidopsis thaliana protein match is: Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase family protein (TAIR:AT4G13750.1)%3B Has 169 Blast hits to 140 proteins in 57 species: Archae - 2%3B Bacteria - 5%3B Metazoa - 24%3B Fungi - 0%3B Plants - 82%3B Viruses - 0%3B Other Eukaryotes - 56 (source: NCBI BLink).; Dbxref=PMID:19880797, PMID:20736450, PMID:22372667, locus:2200013; locus_type=protein_coding
AT1G08310.1	chr1:002619134	0.0	W/2619134-2619292,2619406-2619617,2619691-2619955,2620027-2620338	AT1G08310.1 CDS AT1G08310 ID=AT1G08310.1; Parent=AT1G08310; Name=AT1G08310.1; Note=alpha/beta-Hydrolases superfamily protein; conf_class=2; computational_description=alpha/beta-Hydrolases superfamily protein%3B CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073)%3B BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G44510.2)%3B Has 1160 Blast hits to 1159 proteins in 335 species: Archae - 4%3B Bacteria - 652%3B Metazoa - 57%3B Fungi - 49%3B Plants - 320%3B Viruses - 0%3B Other Eukaryotes - 78 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17085508, locus:2199958; locus_type=protein_coding
AT1G08310.2	chr1:002619134	0.0	W/2619134-2619292,2619397-2619617,2619691-2619955,2620027-2620338	AT1G08310.2 CDS AT1G08310 ID=AT1G08310.2; Parent=AT1G08310; Name=AT1G08310.2; Note=alpha/beta-Hydrolases superfamily protein; conf_class=3; computational_description=alpha/beta-Hydrolases superfamily protein%3B CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073)%3B BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G44510.2)%3B Has 1160 Blast hits to 1159 proteins in 335 species: Archae - 4%3B Bacteria - 652%3B Metazoa - 57%3B Fungi - 49%3B Plants - 320%3B Viruses - 0%3B Other Eukaryotes - 78 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17085508, locus:2199958; locus_type=protein_coding
AT1G08310.3	chr1:002619134	0.0	W/2619134-2619292,2619406-2619617,2619691-2619935,2620027-2620157	AT1G08310.3 CDS AT1G08310 ID=AT1G08310.3; Parent=AT1G08310; Name=AT1G08310.3; Note=alpha/beta-Hydrolases superfamily protein; computational_description=alpha/beta-Hydrolases superfamily protein%3B CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073)%3B BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G44510.2)%3B Has 1160 Blast hits to 1159 proteins in 335 species: Archae - 4%3B Bacteria - 652%3B Metazoa - 57%3B Fungi - 49%3B Plants - 320%3B Viruses - 0%3B Other Eukaryotes - 78 (source: NCBI BLink).; Dbxref=PMID:17085508, locus:2199958; locus_type=protein_coding
AT1G04647.1	chr1:002620439	0.0	W/2620439-2621546	AT1G04647.1 antisense_lncRNA AT1G04647 ID=AT1G04647.1; Parent=AT1G04647; Name=AT1G04647.1; description=Natural antisense transcript overlaps with AT1G08315; Note=Natural antisense transcript overlaps with AT1G08315; locus_type=antisense_long_noncoding_rna
AT1G08315.1	chr1:002620500	0.0	C/2620500-2621477	AT1G08315.1 CDS AT1G08315 ID=AT1G08315.1; Parent=AT1G08315; Name=AT1G08315.1; Note=ARM repeat superfamily protein; conf_class=1; computational_description=ARM repeat superfamily protein%3B FUNCTIONS IN: binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989)%2C Armadillo (InterPro:IPR000225)%2C Armadillo-type fold (InterPro:IPR016024)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein with ARM repeat domain (TAIR:AT2G23140.2)%3B Has 1129 Blast hits to 1121 proteins in 54 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 29%3B Fungi - 8%3B Plants - 1079%3B Viruses - 0%3B Other Eukaryotes - 13 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:1005716696; locus_type=protein_coding
AT1G08320.1	chr1:002622113	0.0	C/2622113-2622200,2622292-2622434,2623228-2623449,2623671-2623942,2624048-2624096,2624256-2624333,2624665-2624724,2624885-2624923,2625603-2625812,2626190-2626272,2626774-2626868,2627345-2627451	AT1G08320.1 CDS AT1G08320 ID=AT1G08320.1; Parent=AT1G08320; Name=AT1G08320.1; Note=bZIP transcription factor family protein; conf_class=3; symbol=TGA9; Alias=bZIP21; full_name=TGACG (TGA) motif-binding protein 9; computational_description=bZIP transcription factor family protein%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B EXPRESSED IN: 9 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827)%2C bZIP transcription factor%2C bZIP-1 (InterPro:IPR011616)%3B BEST Arabidopsis thaliana protein match is: bZIP transcription factor family protein (TAIR:AT5G06839.3)%3B Has 1141 Blast hits to 1141 proteins in 123 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 138%3B Fungi - 49%3B Plants - 915%3B Viruses - 0%3B Other Eukaryotes - 39 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11906833, PMID:12946625, PMID:15010618, PMID:15047879, PMID:15226410, PMID:15805484, PMID:16731568, PMID:18775970, PMID:20736450, PMID:20805327, PMID:22207719, locus:2199968; locus_type=protein_coding
AT1G08320.2	chr1:002622113	0.0	C/2622113-2622200,2622292-2622434,2623228-2623449,2623671-2623942,2624048-2624096,2624256-2624333,2624665-2624724,2624885-2624923,2625603-2625725	AT1G08320.2 CDS AT1G08320 ID=AT1G08320.2; Parent=AT1G08320; Name=AT1G08320.2; Note=bZIP transcription factor family protein; conf_class=3; symbol=TGA9; Alias=bZIP21; full_name=TGACG (TGA) motif-binding protein 9; computational_description=bZIP transcription factor family protein%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B EXPRESSED IN: 9 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827)%2C bZIP transcription factor%2C bZIP-1 (InterPro:IPR011616)%3B BEST Arabidopsis thaliana protein match is: bZIP transcription factor family protein (TAIR:AT5G06839.3)%3B Has 1141 Blast hits to 1141 proteins in 123 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 138%3B Fungi - 49%3B Plants - 915%3B Viruses - 0%3B Other Eukaryotes - 39 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11906833, PMID:12946625, PMID:15010618, PMID:15047879, PMID:15226410, PMID:15805484, PMID:16731568, PMID:18775970, PMID:20736450, PMID:20805327, PMID:22207719, locus:2199968; locus_type=protein_coding
AT1G08320.3	chr1:002622113	0.0	C/2622113-2622200,2622292-2622434,2623228-2623449,2623671-2623942,2624048-2624096,2624256-2624333,2624665-2624724,2624885-2624923,2625603-2625812,2626190-2626272,2626774-2626868,2627345-2627451	AT1G08320.3 CDS AT1G08320 ID=AT1G08320.3; Parent=AT1G08320; Name=AT1G08320.3; Note=bZIP transcription factor family protein; conf_class=3; symbol=TGA9; Alias=bZIP21; full_name=TGACG (TGA) motif-binding protein 9; computational_description=bZIP transcription factor family protein%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B EXPRESSED IN: 9 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827)%2C bZIP transcription factor%2C bZIP-1 (InterPro:IPR011616)%3B BEST Arabidopsis thaliana protein match is: bZIP transcription factor family protein (TAIR:AT5G06839.3)%3B Has 1141 Blast hits to 1141 proteins in 123 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 138%3B Fungi - 49%3B Plants - 915%3B Viruses - 0%3B Other Eukaryotes - 39 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11906833, PMID:12946625, PMID:15010618, PMID:15047879, PMID:15226410, PMID:15805484, PMID:16731568, PMID:18775970, PMID:20736450, PMID:20805327, PMID:22207719, locus:2199968; locus_type=protein_coding
AT1G08320.4	chr1:002622113	0.0	C/2622113-2622200,2622292-2622434,2623228-2623449,2623671-2623942,2624048-2624096,2624256-2624333,2624665-2624724,2624885-2624923,2625603-2625812,2626190-2626272,2626774-2626868,2627345-2627451	AT1G08320.4 CDS AT1G08320 ID=AT1G08320.4; Parent=AT1G08320; Name=AT1G08320.4; Note=bZIP transcription factor family protein; symbol=TGA9; Alias=bZIP21; full_name=TGACG (TGA) motif-binding protein 9; Dbxref=PMID:11906833, PMID:12946625, PMID:15010618, PMID:15047879, PMID:15226410, PMID:15805484, PMID:16731568, PMID:18775970, PMID:20736450, PMID:20805327, PMID:22207719, locus:2199968; computational_description=bZIP transcription factor family protein%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B EXPRESSED IN: 9 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827)%2C bZIP transcription factor%2C bZIP-1 (InterPro:IPR011616)%3B BEST Arabidopsis thaliana protein match is: bZIP transcription factor family protein (TAIR:AT5G06839.3)%3B Has 1141 Blast hits to 1141 proteins in 123 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 138%3B Fungi - 49%3B Plants - 915%3B Viruses - 0%3B Other Eukaryotes - 39 (source: NCBI BLink).; locus_type=protein_coding
AT1G08320.5	chr1:002622113	0.0	C/2622113-2622200,2622292-2622434,2623228-2623449,2623671-2623942,2624048-2624096,2624256-2624333,2624665-2624724,2624885-2624923,2625603-2625725	AT1G08320.5 CDS AT1G08320 ID=AT1G08320.5; Parent=AT1G08320; Name=AT1G08320.5; Note=bZIP transcription factor family protein; symbol=TGA9; Alias=bZIP21; full_name=TGACG (TGA) motif-binding protein 9; Dbxref=PMID:11906833, PMID:12946625, PMID:15010618, PMID:15047879, PMID:15226410, PMID:15805484, PMID:16731568, PMID:18775970, PMID:20736450, PMID:20805327, PMID:22207719, locus:2199968; computational_description=bZIP transcription factor family protein%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B EXPRESSED IN: 9 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827)%2C bZIP transcription factor%2C bZIP-1 (InterPro:IPR011616)%3B BEST Arabidopsis thaliana protein match is: bZIP transcription factor family protein (TAIR:AT5G06839.3)%3B Has 1141 Blast hits to 1141 proteins in 123 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 138%3B Fungi - 49%3B Plants - 915%3B Viruses - 0%3B Other Eukaryotes - 39 (source: NCBI BLink).; locus_type=protein_coding
AT1G04653.1	chr1:002629836	0.0	W/2629836-2630042	AT1G04653.1 lnc_RNA AT1G04653 ID=AT1G04653.1; Parent=AT1G04653; Name=AT1G04653.1; locus_type=long_noncoding_rna
AT1G08340.1	chr1:002631308	0.0	W/2631308-2631432,2631530-2631770,2631857-2632087,2632271-2632669	AT1G08340.1 CDS AT1G08340 ID=AT1G08340.1; Parent=AT1G08340; Name=AT1G08340.1; Note=Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein; conf_class=1; computational_description=Rho GTPase activating protein with PAK-box/P21-Rho-binding domain%3B FUNCTIONS IN: Rac GTPase activator activity%3B INVOLVED IN: signal transduction%3B LOCATED IN: intracellular%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: PAK-box/P21-Rho-binding (InterPro:IPR000095)%2C Rho GTPase activation protein (InterPro:IPR008936)%2C RhoGAP (InterPro:IPR000198)%3B BEST Arabidopsis thaliana protein match is: Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (TAIR:AT5G22400.1)%3B Has 26346 Blast hits to 14360 proteins in 544 species: Archae - 23%3B Bacteria - 479%3B Metazoa - 13985%3B Fungi - 2813%3B Plants - 1188%3B Viruses - 517%3B Other Eukaryotes - 7341 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15980264, PMID:16969662, PMID:22589469, locus:2199948; locus_type=protein_coding
AT1TE08580	chr1:002632338	0.0	W/2632338-2632532	AT1TE08580 transposable_element AT1TE08580 ID=AT1TE08580; Name=AT1TE08580; Alias=ATMU10
AT1G08350.1	chr1:002632970	0.0	C/2632970-2633186,2633412-2633899,2633995-2634151,2634288-2634419,2634523-2635055	AT1G08350.1 CDS AT1G08350 ID=AT1G08350.1; Parent=AT1G08350; Name=AT1G08350.1; Note=Endomembrane protein 70 protein family; conf_class=2; computational_description=Endomembrane protein 70 protein family%3B CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240)%3B BEST Arabidopsis thaliana protein match is: Endomembrane protein 70 protein family (TAIR:AT5G37310.1)%3B Has 1520 Blast hits to 1507 proteins in 318 species: Archae - 0%3B Bacteria - 3%3B Metazoa - 602%3B Fungi - 224%3B Plants - 440%3B Viruses - 0%3B Other Eukaryotes - 251 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11115874, PMID:11591731, PMID:22570441, locus:2201806; locus_type=protein_coding
AT1G08350.2	chr1:002632970	0.0	C/2632970-2633186,2633412-2633899,2633995-2634151,2634288-2634419,2634523-2635111,2635209-2635249,2635460-2635605	AT1G08350.2 CDS AT1G08350 ID=AT1G08350.2; Parent=AT1G08350; Name=AT1G08350.2; Note=Endomembrane protein 70 protein family; conf_class=2; computational_description=Endomembrane protein 70 protein family%3B CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240)%3B BEST Arabidopsis thaliana protein match is: Endomembrane protein 70 protein family (TAIR:AT5G37310.1)%3B Has 1520 Blast hits to 1507 proteins in 318 species: Archae - 0%3B Bacteria - 3%3B Metazoa - 602%3B Fungi - 224%3B Plants - 440%3B Viruses - 0%3B Other Eukaryotes - 251 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11115874, PMID:11591731, PMID:22570441, locus:2201806; locus_type=protein_coding
AT1G08350.3	chr1:002632970	0.0	C/2632970-2633186,2633412-2633899,2633995-2634151,2634288-2634419,2634523-2635111,2635209-2635249,2635460-2635605	AT1G08350.3 CDS AT1G08350 ID=AT1G08350.3; Parent=AT1G08350; Name=AT1G08350.3; Note=Endomembrane protein 70 protein family; Dbxref=PMID:11115874, PMID:11591731, PMID:22570441, locus:2201806; computational_description=Endomembrane protein 70 protein family%3B CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240)%3B BEST Arabidopsis thaliana protein match is: Endomembrane protein 70 protein family (TAIR:AT5G37310.1)%3B Has 1520 Blast hits to 1507 proteins in 318 species: Archae - 0%3B Bacteria - 3%3B Metazoa - 602%3B Fungi - 224%3B Plants - 440%3B Viruses - 0%3B Other Eukaryotes - 251 (source: NCBI BLink).; locus_type=protein_coding
AT1G08350.4	chr1:002633354	0.0	C/2633354-2633899,2633995-2634151,2634288-2634419,2634523-2635111,2635209-2635249,2635460-2635605	AT1G08350.4 CDS AT1G08350 ID=AT1G08350.4; Parent=AT1G08350; Name=AT1G08350.4; Note=Endomembrane protein 70 protein family; computational_description=Endomembrane protein 70 protein family%3B CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240)%3B BEST Arabidopsis thaliana protein match is: Endomembrane protein 70 protein family (TAIR:AT5G37310.1)%3B Has 1520 Blast hits to 1507 proteins in 318 species: Archae - 0%3B Bacteria - 3%3B Metazoa - 602%3B Fungi - 224%3B Plants - 440%3B Viruses - 0%3B Other Eukaryotes - 251 (source: NCBI BLink).; Dbxref=PMID:11115874, PMID:11591731, PMID:22570441, locus:2201806; locus_type=protein_coding
AT1G08360.1	chr1:002636231	0.0	W/2636231-2636235,2636648-2636867,2637087-2637252,2637435-2637694	AT1G08360.1 CDS AT1G08360 ID=AT1G08360.1; Parent=AT1G08360; Name=AT1G08360.1; Note=Ribosomal protein L1p/L10e family; conf_class=2; computational_description=Ribosomal protein L1p/L10e family%3B FUNCTIONS IN: structural constituent of ribosome%2C RNA binding%3B INVOLVED IN: translation%2C RNA processing%3B LOCATED IN: cytosolic ribosome%2C ribosome%2C cytosolic large ribosomal subunit%2C plasma membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L1 (InterPro:IPR002143)%2C Ribosomal protein L1%2C 2-layer alpha/beta-sandwich (InterPro:IPR016094)%3B BEST Arabidopsis thaliana protein match is: Ribosomal protein L1p/L10e family (TAIR:AT2G27530.2)%3B Has 3821 Blast hits to 3820 proteins in 1247 species: Archae - 280%3B Bacteria - 1757%3B Metazoa - 462%3B Fungi - 186%3B Plants - 511%3B Viruses - 0%3B Other Eukaryotes - 625 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11598216, PMID:12609038, PMID:15821981, PMID:16623895, PMID:16776300, PMID:17672910, PMID:17934214, PMID:22195043, locus:2201811; locus_type=protein_coding
AT1G08370.1	chr1:002638355	0.0	W/2638355-2638513,2638594-2638634,2638722-2638771,2638907-2639051,2639253-2639309,2639461-2639575,2639766-2640245,2640311-2640367	AT1G08370.1 CDS AT1G08370 ID=AT1G08370.1; Parent=AT1G08370; Name=AT1G08370.1; Note=decapping 1; curator_summary=Encodes DCP1 involved in mRNA decapping. DCP1 forms a mRNA decapping complex with DCP2 (At5g13570) and VCS (VARICOSE) (At3g13300). However%2C unlike DCP2%2C DCP1 itself does not have mRNA decapping activity in vitro. DCP1%2C DCP2 and VCS colocalize in cytoplasmic loci%2C which are putative Arabidopsis mRNA processing bodies. Null mutants of DCP1%2C DCP2%2C and VCS accumulate capped mRNAs with a reduced degradation rate. These mutants also share a similar lethal phenotype at the seedling cotyledon stage%2C with disorganized veins%2C swollen root hairs%2C and altered epidermal cell morphology. The protein was shown by immunoprecipitation not to interact with DCP2.; conf_class=2; symbol=DCP1; Alias=ATDCP1; full_name=decapping 1; computational_description=decapping 1 (DCP1)%3B CONTAINS InterPro DOMAIN/s: Dcp1-like decapping (InterPro:IPR010334)%3B Has 3561 Blast hits to 2917 proteins in 377 species: Archae - 4%3B Bacteria - 239%3B Metazoa - 1310%3B Fungi - 561%3B Plants - 741%3B Viruses - 142%3B Other Eukaryotes - 564 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16367961, PMID:17158744, PMID:17158604, PMID:17485080, PMID:18775970, PMID:19855049, PMID:22184231, PMID:22407295, PMID:22589469, PMID:22614834, PMID:24525673, PMID:25339350, PMID:25630334, PMID:25736060, locus:2201821; locus_type=protein_coding
AT1G08380.1	chr1:002641004	0.0	C/2641004-2641274,2641492-2641564,2641661-2641739	AT1G08380.1 CDS AT1G08380 ID=AT1G08380.1; Parent=AT1G08380; Name=AT1G08380.1; Note=photosystem I subunit O; curator_summary=Encodes subunit O of photosystem I.; conf_class=2; symbol=PSAO; full_name=photosystem I subunit O; computational_description=photosystem I subunit O (PSAO)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: response to salt stress%2C photosynthesis%2C light harvesting in photosystem I%3B LOCATED IN: thylakoid%2C photosystem I%2C chloroplast%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Photosystem I PsaO (InterPro:IPR017498)%3B Has 161 Blast hits to 161 proteins in 28 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 159%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11801243, PMID:11351099, PMID:12376647, PMID:14576160, PMID:15326280, PMID:16500996, PMID:18650403, PMID:20736450, locus:2201836; locus_type=protein_coding
AT1G08390.1	chr1:002642220	0.0	W/2642220-2642339,2642420-2642599,2642990-2643103	AT1G08390.1 CDS AT1G08390 ID=AT1G08390.1; Parent=AT1G08390; Name=AT1G08390.1; Note=recQ-mediated instability-like protein; conf_class=1; computational_description=unknown protein%3B Has 62 Blast hits to 62 proteins in 27 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 34%3B Fungi - 0%3B Plants - 28%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14730060, locus:2201846; locus_type=protein_coding
AT1G08390.2	chr1:002642220	0.0	W/2642220-2642339,2642420-2642541,2642990-2643017	AT1G08390.2 CDS AT1G08390 ID=AT1G08390.2; Parent=AT1G08390; Name=AT1G08390.2; Note=recQ-mediated instability-like protein; computational_description=unknown protein%3B Has 62 Blast hits to 62 proteins in 27 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 34%3B Fungi - 0%3B Plants - 28%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=PMID:14730060, locus:2201846; locus_type=protein_coding
AT1G08400.1	chr1:002643348	0.0	C/2643348-2645288,2645378-2645466,2645539-2645628,2645711-2646005	AT1G08400.1 CDS AT1G08400 ID=AT1G08400.1; Parent=AT1G08400; Name=AT1G08400.1; Note=RINT-1 / TIP-1 family; conf_class=1; computational_description=RINT-1 / TIP-1 family%3B CONTAINS InterPro DOMAIN/s: RINT-1/TIP-1 (InterPro:IPR007528)%3B BEST Arabidopsis thaliana protein match is: RINT-1 / TIP-1 family (TAIR:AT3G47700.1)%3B Has 146 Blast hits to 144 proteins in 62 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 64%3B Fungi - 34%3B Plants - 43%3B Viruses - 0%3B Other Eukaryotes - 5 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:17194767, PMID:20736450, locus:2201771; locus_type=protein_coding
AT1G08410.1	chr1:002646307	0.0	W/2646307-2646533,2646701-2646802,2646891-2646977,2647483-2647576,2647681-2647737,2647821-2647900,2647984-2649106	AT1G08410.1 CDS AT1G08410 ID=AT1G08410.1; Parent=AT1G08410; Name=AT1G08410.1; Note=P-loop containing nucleoside triphosphate hydrolases superfamily protein; curator_summary=Encodes a ribosome biogenesis factor LSG1-2. Required for 40S maturation.; conf_class=2; Alias=LSG1-2, yeast Lsg1 orthologue 2; computational_description=P-loop containing nucleoside triphosphate hydrolases superfamily protein%3B FUNCTIONS IN: GTP binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: intracellular%3B EXPRESSED IN: 18 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: GTP1/OBG (InterPro:IPR006073)%2C GTP-binding protein%2C HSR1-related (InterPro:IPR002917)%3B BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G27200.1)%3B Has 7267 Blast hits to 7158 proteins in 1932 species: Archae - 109%3B Bacteria - 4700%3B Metazoa - 622%3B Fungi - 502%3B Plants - 285%3B Viruses - 0%3B Other Eukaryotes - 1049 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16849600, PMID:25319368, locus:2201861; locus_type=protein_coding
AT1G08420.1	chr1:002649959	0.0	W/2649959-2650427,2650967-2651027,2651142-2651220,2651332-2651411,2651495-2651589,2651689-2651788,2651866-2651935,2652483-2652584,2652661-2652742,2652966-2653145,2653459-2653726,2653819-2654056,2654207-2654377,2654716-2654954,2655045-2655129,2655226-2655324,2655393-2655592,2655672-2655747,2656019-2656154,2656249-2656388,2656478-2656564	AT1G08420.1 CDS AT1G08420 ID=AT1G08420.1; Parent=AT1G08420; Name=AT1G08420.1; Note=BRI1 suppressor 1 (BSU1)-like 2; conf_class=2; symbol=BSL2; full_name=BRI1 suppressor 1 (BSU1)-like 2; computational_description=BRI1 suppressor 1 (BSU1)-like 2 (BSL2)%3B FUNCTIONS IN: hydrolase activity%2C manganese ion binding%2C protein serine/threonine phosphatase activity%2C phosphoprotein phosphatase activity%2C iron ion binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: male gametophyte%2C guard cell%2C cultured cell%2C pollen tube%3B EXPRESSED DURING: M germinated pollen stage%3B CONTAINS InterPro DOMAIN/s: Serine/threonine protein phosphatase%2C BSU1 (InterPro:IPR012391)%2C Galactose oxidase/kelch%2C beta-propeller (InterPro:IPR011043)%2C Metallophosphoesterase (InterPro:IPR004843)%2C Kelch repeat type 2 (InterPro:IPR011498)%2C Kelch-type beta propeller (InterPro:IPR015915)%2C Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186)%3B BEST Arabidopsis thaliana protein match is: BRI1 suppressor 1 (BSU1)-like 3 (TAIR:AT2G27210.1)%3B Has 11513 Blast hits to 9221 proteins in 570 species: Archae - 78%3B Bacteria - 393%3B Metazoa - 3912%3B Fungi - 1870%3B Plants - 2741%3B Viruses - 9%3B Other Eukaryotes - 2510 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14977918, PMID:17368080, PMID:18156295, PMID:18650403, PMID:18775970, PMID:24492333, locus:2201776; locus_type=protein_coding
AT1G08420.2	chr1:002649959	0.0	W/2649959-2650427,2650967-2651027,2651142-2651220,2651332-2651411,2651495-2651589,2651689-2651788,2651866-2651935,2652483-2652584,2652661-2652742,2652981-2653145,2653459-2653726,2653819-2654056,2654207-2654377,2654716-2654954,2655045-2655129,2655226-2655324,2655393-2655592,2655672-2655747,2656019-2656154,2656249-2656388,2656478-2656564	AT1G08420.2 CDS AT1G08420 ID=AT1G08420.2; Parent=AT1G08420; Name=AT1G08420.2; Note=BRI1 suppressor 1 (BSU1)-like 2; conf_class=4; symbol=BSL2; full_name=BRI1 suppressor 1 (BSU1)-like 2; computational_description=BRI1 suppressor 1 (BSU1)-like 2 (BSL2)%3B FUNCTIONS IN: hydrolase activity%2C manganese ion binding%2C protein serine/threonine phosphatase activity%2C phosphoprotein phosphatase activity%2C iron ion binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: male gametophyte%2C guard cell%2C cultured cell%2C pollen tube%3B EXPRESSED DURING: M germinated pollen stage%3B CONTAINS InterPro DOMAIN/s: Serine/threonine protein phosphatase%2C BSU1 (InterPro:IPR012391)%2C Galactose oxidase/kelch%2C beta-propeller (InterPro:IPR011043)%2C Metallophosphoesterase (InterPro:IPR004843)%2C Kelch repeat type 2 (InterPro:IPR011498)%2C Kelch-type beta propeller (InterPro:IPR015915)%2C Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186)%3B BEST Arabidopsis thaliana protein match is: BRI1 suppressor 1 (BSU1)-like 3 (TAIR:AT2G27210.1)%3B Has 11513 Blast hits to 9221 proteins in 570 species: Archae - 78%3B Bacteria - 393%3B Metazoa - 3912%3B Fungi - 1870%3B Plants - 2741%3B Viruses - 9%3B Other Eukaryotes - 2510 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:14977918, PMID:17368080, PMID:18156295, PMID:18650403, PMID:18775970, PMID:24492333, locus:2201776; locus_type=protein_coding
AT1TE08660	chr1:002657418	0.0	W/2657418-2657920	AT1TE08660 transposable_element AT1TE08660 ID=AT1TE08660; Name=AT1TE08660; Alias=ATLANTYS3
AT1G08430.1	chr1:002658800	0.0	W/2658800-2659010,2659133-2659273,2659407-2659679,2659774-2659895,2659983-2660126,2660439-2661029	AT1G08430.1 CDS AT1G08430 ID=AT1G08430.1; Parent=AT1G08430; Name=AT1G08430.1; Note=aluminum-activated malate transporter 1; curator_summary=Encodes a Al-activated malate efflux transporter. It is essential for aluminum tolerance but does not represent the major Al tolerance QTL. Staurosporine and calyculin A both block all changes in AtALMT1 gene expression (as a result malate release is totally inhibited). AtALMT1 transcription was clearly induced by indole-3-acetic acid%2C abscisic acid%2C low pH%2C hydrogen peroxide and flg22.; conf_class=2; symbol=ALMT1; Alias=ATALMT1, ARABIDOPSIS THALIANA ALUMINUM-ACTIVATED MALATE TRANSPORTER 1; full_name=aluminum-activated malate transporter 1; computational_description=aluminum-activated malate transporter 1 (ALMT1)%3B CONTAINS InterPro DOMAIN/s: Malate transporter%2C aliminium toerance (InterPro:IPR020966)%3B BEST Arabidopsis thaliana protein match is: Aluminium activated malate transporter family protein (TAIR:AT1G08440.1)%3B Has 520 Blast hits to 518 proteins in 110 species: Archae - 0%3B Bacteria - 144%3B Metazoa - 0%3B Fungi - 10%3B Plants - 351%3B Viruses - 0%3B Other Eukaryotes - 15 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16648215, PMID:16740662, PMID:17885092, PMID:18826429, PMID:19321711, PMID:19309492, PMID:19704731, PMID:20663086, PMID:21660471, PMID:22411507, PMID:22972705, PMID:23624855, PMID:23794026, PMID:23857348, PMID:23839867, PMID:23935008, PMID:24118304, PMID:24310121, PMID:25311199, PMID:25627216, PMID:25721473, locus:2201781; locus_type=protein_coding
AT1TE08670	chr1:002662995	0.0	W/2662995-2663093	AT1TE08670 transposable_element AT1TE08670 ID=AT1TE08670; Name=AT1TE08670; Alias=ATDNAI27T9C
AT1G08440.1	chr1:002663027	0.0	W/2663027-2663228,2663370-2663510,2663684-2663956,2664158-2664279,2664395-2664538,2664720-2665343	AT1G08440.1 CDS AT1G08440 ID=AT1G08440.1; Parent=AT1G08440; Name=AT1G08440.1; Note=aluminum activated malate transporter family protein; conf_class=4; computational_description=Aluminium activated malate transporter family protein%3B INVOLVED IN: response to aluminum ion%3B CONTAINS InterPro DOMAIN/s: Malate transporter%2C aliminium toerance (InterPro:IPR020966)%3B BEST Arabidopsis thaliana protein match is: aluminum-activated malate transporter 1 (TAIR:AT1G08430.1)%3B Has 610 Blast hits to 608 proteins in 146 species: Archae - 0%3B Bacteria - 224%3B Metazoa - 0%3B Fungi - 10%3B Plants - 352%3B Viruses - 0%3B Other Eukaryotes - 24 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:16488918, locus:2201791; locus_type=protein_coding
AT1G08450.1	chr1:002668008	0.0	C/2668008-2668019,2668135-2668167,2668288-2668374,2668468-2668524,2668696-2668791,2669066-2669133,2669226-2669283,2669374-2669460,2669648-2669695,2669822-2669878,2670159-2670417,2670607-2670799,2671289-2671396,2671689-2671800	AT1G08450.1 CDS AT1G08450 ID=AT1G08450.1; Parent=AT1G08450; Name=AT1G08450.1; Note=calreticulin 3; curator_summary=Encodes one of three Arabidopsis calreticulins. In CRT-deficient mouse fibroblasts%2C this protein restores ER Ca2+ levels. Non-receptor component required for EFR-mediated immunity. Mutants show de-repressed anthocyanin accumulation in the presence of elf18%2C and EFR accumulation and signalling.; conf_class=2; symbol=CRT3; Alias=AtCRT3, A. thaliana calreticulin 3, EBS2, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, PSL1, PRIORITY IN SWEET LIFE 1; full_name=calreticulin 3; computational_description=calreticulin 3 (CRT3)%3B FUNCTIONS IN: unfolded protein binding%2C calcium ion binding%3B INVOLVED IN: in 6 processes%3B LOCATED IN: endoplasmic reticulum%2C endoplasmic reticulum membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Calreticulin/calnexin%2C P (InterPro:IPR009033)%2C Calreticulin/calnexin (InterPro:IPR001580)%2C Calreticulin/calnexin%2C conserved site (InterPro:IPR018124)%2C Calreticulin (InterPro:IPR009169)%2C Concanavalin A-like lectin/glucanase%2C subgroup (InterPro:IPR013320)%2C Concanavalin A-like lectin/glucanase (InterPro:IPR008985)%3B BEST Arabidopsis thaliana protein match is: calreticulin 1b (TAIR:AT1G09210.1)%3B Has 1183 Blast hits to 1180 proteins in 302 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 620%3B Fungi - 150%3B Plants - 256%3B Viruses - 0%3B Other Eukaryotes - 157 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9159940, PMID:12535341, PMID:14623097, PMID:15010611, PMID:15990873, PMID:16381965, PMID:16766691, PMID:18307823, PMID:18650403, PMID:18931141, PMID:19597144, PMID:19763087, PMID:19717464, PMID:20007779, PMID:21954464, PMID:21974727, PMID:23288863, PMID:23425854, PMID:22827946, PMID:24022063, PMID:24498907, locus:2201816; locus_type=protein_coding
AT1G08450.2	chr1:002668008	0.0	C/2668008-2668019,2668135-2668167,2668288-2668374,2668468-2668524,2668696-2668791,2669066-2669133,2669226-2669283,2669374-2669460,2669648-2669695,2669822-2669878,2670159-2670255,2670607-2670799,2671289-2671396,2671689-2671800	AT1G08450.2 CDS AT1G08450 ID=AT1G08450.2; Parent=AT1G08450; Name=AT1G08450.2; Note=calreticulin 3; curator_summary=Encodes one of three Arabidopsis calreticulins. In CRT-deficient mouse fibroblasts%2C this protein restores ER Ca2+ levels. Non-receptor component required for EFR-mediated immunity. Mutants show de-repressed anthocyanin accumulation in the presence of elf18%2C and EFR accumulation and signalling.; conf_class=2; symbol=CRT3; Alias=AtCRT3, A. thaliana calreticulin 3, EBS2, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, PSL1, PRIORITY IN SWEET LIFE 1; full_name=calreticulin 3; computational_description=calreticulin 3 (CRT3)%3B FUNCTIONS IN: unfolded protein binding%2C calcium ion binding%3B INVOLVED IN: in 6 processes%3B LOCATED IN: endoplasmic reticulum%2C endoplasmic reticulum membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Calreticulin/calnexin%2C P (InterPro:IPR009033)%2C Calreticulin/calnexin (InterPro:IPR001580)%2C Calreticulin/calnexin%2C conserved site (InterPro:IPR018124)%2C Calreticulin (InterPro:IPR009169)%2C Concanavalin A-like lectin/glucanase%2C subgroup (InterPro:IPR013320)%2C Concanavalin A-like lectin/glucanase (InterPro:IPR008985)%3B BEST Arabidopsis thaliana protein match is: calreticulin 1b (TAIR:AT1G09210.1)%3B Has 1183 Blast hits to 1180 proteins in 302 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 620%3B Fungi - 150%3B Plants - 256%3B Viruses - 0%3B Other Eukaryotes - 157 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9159940, PMID:12535341, PMID:14623097, PMID:15010611, PMID:15990873, PMID:16381965, PMID:16766691, PMID:18307823, PMID:18650403, PMID:18931141, PMID:19597144, PMID:19763087, PMID:19717464, PMID:20007779, PMID:21954464, PMID:21974727, PMID:23288863, PMID:23425854, PMID:22827946, PMID:24022063, PMID:24498907, locus:2201816; locus_type=protein_coding
AT1G08450.3	chr1:002668008	0.0	C/2668008-2668019,2668135-2668167,2668288-2668374,2668468-2668524,2668696-2668791,2669066-2669133,2669391-2669460,2669648-2669695,2669822-2669878,2670159-2670417,2670607-2670799,2671289-2671396,2671689-2671800	AT1G08450.3 CDS AT1G08450 ID=AT1G08450.3; Parent=AT1G08450; Name=AT1G08450.3; Note=calreticulin 3; curator_summary=Encodes one of three Arabidopsis calreticulins. In CRT-deficient mouse fibroblasts%2C this protein restores ER Ca2+ levels. Non-receptor component required for EFR-mediated immunity. Mutants show de-repressed anthocyanin accumulation in the presence of elf18%2C and EFR accumulation and signalling.; conf_class=4; symbol=CRT3; Alias=AtCRT3, A. thaliana calreticulin 3, EBS2, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, PSL1, PRIORITY IN SWEET LIFE 1; full_name=calreticulin 3; computational_description=calreticulin 3 (CRT3)%3B FUNCTIONS IN: unfolded protein binding%2C calcium ion binding%3B INVOLVED IN: in 6 processes%3B LOCATED IN: endoplasmic reticulum%2C endoplasmic reticulum membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Calreticulin/calnexin%2C P (InterPro:IPR009033)%2C Calreticulin/calnexin (InterPro:IPR001580)%2C Calreticulin/calnexin%2C conserved site (InterPro:IPR018124)%2C Calreticulin (InterPro:IPR009169)%2C Concanavalin A-like lectin/glucanase%2C subgroup (InterPro:IPR013320)%2C Concanavalin A-like lectin/glucanase (InterPro:IPR008985)%3B BEST Arabidopsis thaliana protein match is: calreticulin 1b (TAIR:AT1G09210.1)%3B Has 1183 Blast hits to 1180 proteins in 302 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 620%3B Fungi - 150%3B Plants - 256%3B Viruses - 0%3B Other Eukaryotes - 157 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:9159940, PMID:12535341, PMID:14623097, PMID:15010611, PMID:15990873, PMID:16381965, PMID:16766691, PMID:18307823, PMID:18650403, PMID:18931141, PMID:19597144, PMID:19763087, PMID:19717464, PMID:20007779, PMID:21954464, PMID:21974727, PMID:23288863, PMID:23425854, PMID:22827946, PMID:24022063, PMID:24498907, locus:2201816; locus_type=protein_coding
AT1G08460.1	chr1:002672527	0.0	W/2672527-2672770,2672921-2673507,2674167-2674469	AT1G08460.1 CDS AT1G08460 ID=AT1G08460.1; Parent=AT1G08460; Name=AT1G08460.1; Note=histone deacetylase 8; conf_class=2; symbol=HDA08; Alias=ATHDA8, HDA8, HISTONE DEACETYLASE 8; full_name=histone deacetylase 8; computational_description=histone deacetylase 8 (HDA08)%3B CONTAINS InterPro DOMAIN/s: Histone deacetylase superfamily (InterPro:IPR000286)%3B BEST Arabidopsis thaliana protein match is: histone deacetylase 5 (TAIR:AT5G61060.1)%3B Has 9025 Blast hits to 8820 proteins in 1442 species: Archae - 223%3B Bacteria - 3178%3B Metazoa - 1474%3B Fungi - 641%3B Plants - 477%3B Viruses - 0%3B Other Eukaryotes - 3032 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12466527, PMID:16489130, PMID:18650403, PMID:18775970, PMID:22363501, PMID:25057814, locus:2201826; locus_type=protein_coding
AT1G08460.2	chr1:002672527	0.0	W/2672527-2672770,2672921-2673651	AT1G08460.2 CDS AT1G08460 ID=AT1G08460.2; Parent=AT1G08460; Name=AT1G08460.2; Note=histone deacetylase 8; symbol=HDA08; Alias=ATHDA8, HDA8, HISTONE DEACETYLASE 8; full_name=histone deacetylase 8; computational_description=histone deacetylase 8 (HDA08)%3B CONTAINS InterPro DOMAIN/s: Histone deacetylase superfamily (InterPro:IPR000286)%3B BEST Arabidopsis thaliana protein match is: histone deacetylase 5 (TAIR:AT5G61060.1)%3B Has 9025 Blast hits to 8820 proteins in 1442 species: Archae - 223%3B Bacteria - 3178%3B Metazoa - 1474%3B Fungi - 641%3B Plants - 477%3B Viruses - 0%3B Other Eukaryotes - 3032 (source: NCBI BLink).; Dbxref=PMID:12466527, PMID:16489130, PMID:18650403, PMID:18775970, PMID:22363501, PMID:25057814, locus:2201826; locus_type=protein_coding
AT1TE08710	chr1:002675839	0.0	W/2675839-2675952	AT1TE08710 transposable_element AT1TE08710 ID=AT1TE08710; Name=AT1TE08710; Alias=ATDNAI27T9A
AT1G08465.1	chr1:002676033	0.0	W/2676033-2676101,2678103-2678234,2678320-2678440,2678554-2678602,2678679-2678754,2679275-2679382	AT1G08465.1 CDS AT1G08465 ID=AT1G08465.1; Parent=AT1G08465; Name=AT1G08465.1; Note=Plant-specific transcription factor YABBY family protein; curator_summary=Member of the YABBY family of Arabidopsis proteins involved in the abaxial cell fate specification in lateral organs; conf_class=2; symbol=YAB2; full_name=YABBY2; computational_description=YABBY2 (YAB2)%3B CONTAINS InterPro DOMAIN/s: High mobility group%2C superfamily (InterPro:IPR009071)%2C YABBY protein (InterPro:IPR006780)%3B BEST Arabidopsis thaliana protein match is: plant-specific transcription factor YABBY family protein (TAIR:AT2G26580.2)%3B Has 446 Blast hits to 444 proteins in 124 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 2%3B Plants - 433%3B Viruses - 0%3B Other Eukaryotes - 11 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10457020, PMID:11118137, PMID:15229173, PMID:17650514, PMID:21974722, locus:2826731; locus_type=protein_coding
AT1G08470.1	chr1:002682262	0.0	C/2682262-2682664,2682869-2683036,2683299-2683574,2683652-2683977	AT1G08470.1 CDS AT1G08470 ID=AT1G08470.1; Parent=AT1G08470; Name=AT1G08470.1; Note=strictosidine synthase-like 3; curator_summary=Although this enzyme is predicted to encode a strictosidine synthase (SS)%2C it lacks a conserved catalytic glutamate residue found in active SS enzymes and it is not expected to have SS activity.; conf_class=2; symbol=SSL3; full_name=strictosidine synthase-like 3; computational_description=strictosidine synthase-like 3 (SSL3)%3B FUNCTIONS IN: strictosidine synthase activity%3B INVOLVED IN: alkaloid biosynthetic process%2C biosynthetic process%3B LOCATED IN: endoplasmic reticulum%2C plasma membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Strictosidine synthase%2C conserved region (InterPro:IPR018119)%2C Strictosidine synthase (InterPro:IPR004141)%2C Six-bladed beta-propeller%2C TolB-like (InterPro:IPR011042)%3B BEST Arabidopsis thaliana protein match is: Calcium-dependent phosphotriesterase superfamily protein (TAIR:AT5G22020.1)%3B Has 1252 Blast hits to 1238 proteins in 269 species: Archae - 3%3B Bacteria - 366%3B Metazoa - 225%3B Fungi - 17%3B Plants - 480%3B Viruses - 0%3B Other Eukaryotes - 161 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10777701, PMID:16618929, PMID:19121120, locus:2201841; locus_type=protein_coding
AT1G08480.1	chr1:002684340	0.0	W/2684340-2684519,2684881-2684983,2685250-2685395	AT1G08480.1 CDS AT1G08480 ID=AT1G08480.1; Parent=AT1G08480; Name=AT1G08480.1; Note=succinate dehydrogenase subunit; curator_summary=predicted to encode subunit 6 of mitochondrial complex II and to participate in the respiratory chain; conf_class=2; symbol=SDH6; full_name=succinate dehydrogenase 6; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: mitochondrion%2C plasma membrane%2C plastid%2C vacuole%3B EXPRESSED IN: 27 plant structures%3B EXPRESSED DURING: 15 growth stages%3B Has 39 Blast hits to 39 proteins in 13 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 39%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12970493, PMID:14671022, PMID:16618929, PMID:17660356, PMID:18650403, PMID:18805951, PMID:18775970, PMID:15604729, PMID:19924544, locus:2201851; locus_type=protein_coding
AT1G08490.1	chr1:002685980	0.0	C/2685980-2686150,2686673-2686831,2686936-2687035,2687115-2687178,2687295-2687367,2687449-2687594,2687704-2687890,2687966-2688259,2688350-2688547	AT1G08490.1 CDS AT1G08490 ID=AT1G08490.1; Parent=AT1G08490; Name=AT1G08490.1; Note=chloroplastic NIFS-like cysteine desulfurase; curator_summary=Chloroplastic NifS-like protein that can catalyze the conversion of cysteine into alanine and elemental sulfur (S(0)) and of selenocysteine into alanine and elemental Se (Se(0)). Overexpression enhances selenium tolerance and accumulation.; conf_class=2; symbol=CPNIFS; Alias=ATCPNIFS, ATNFS2, ATSUFS, SUFS; full_name=chloroplastic NIFS-like cysteine desulfurase; computational_description=chloroplastic NIFS-like cysteine desulfurase (CPNIFS)%3B FUNCTIONS IN: transaminase activity%2C selenocysteine lyase activity%2C cysteine desulfurase activity%3B INVOLVED IN: iron incorporation into metallo-sulfur cluster%2C response to selenium ion%2C sulfur metabolic process%2C selenium metabolic process%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase%2C major domain (InterPro:IPR015424)%2C Aminotransferase%2C class V/Cysteine desulfurase (InterPro:IPR000192)%2C Cysteine desulfurase%2C SufS (InterPro:IPR010970)%2C Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (InterPro:IPR015421)%3B BEST Arabidopsis thaliana protein match is: nitrogen fixation S (NIFS)-like 1 (TAIR:AT5G65720.1)%3B Has 22660 Blast hits to 22653 proteins in 2897 species: Archae - 350%3B Bacteria - 15408%3B Metazoa - 379%3B Fungi - 404%3B Plants - 268%3B Viruses - 1%3B Other Eukaryotes - 5850 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16244144, PMID:17372218, PMID:22511606, locus:2201856; locus_type=protein_coding
AT1G08500.1	chr1:002689110	0.0	W/2689110-2689302,2689388-2689881	AT1G08500.1 CDS AT1G08500 ID=AT1G08500.1; Parent=AT1G08500; Name=AT1G08500.1; Note=early nodulin-like protein 18; conf_class=2; symbol=ENODL18; Alias=AtENODL18; full_name=early nodulin-like protein 18; computational_description=early nodulin-like protein 18 (ENODL18)%3B FUNCTIONS IN: electron carrier activity%2C copper ion binding%3B LOCATED IN: anchored to membrane%3B EXPRESSED IN: 14 plant structures%3B EXPRESSED DURING: LP.06 six leaves visible%2C 4 anthesis%2C petal differentiation and expansion stage%2C LP.08 eight leaves visible%2C E expanded cotyledon stage%3B CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245)%2C Cupredoxin (InterPro:IPR008972)%3B BEST Arabidopsis thaliana protein match is: Cupredoxin superfamily protein (TAIR:AT2G31050.1)%3B Has 799 Blast hits to 788 proteins in 52 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 799%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12068095, PMID:12805588, PMID:17293437, PMID:19897921, locus:2201801; locus_type=protein_coding
AT1G08510.1	chr1:002691546	0.0	C/2691546-2691866,2691957-2692128,2692356-2692469,2692697-2692830,2692912-2693409	AT1G08510.1 CDS AT1G08510 ID=AT1G08510.1; Parent=AT1G08510; Name=AT1G08510.1; Note=fatty acyl-ACP thioesterases B; curator_summary=Encodes an acyl-acyl carrier protein thioesterase. Hydrolyzes primarily saturated acyl-ACPs with chain lengths that vary between 8 and 18 carbons. Involved in saturated fatty acid synthesis. Nuclear-encoded%2C plastid-targeted globular protein that is functional as dimer.; conf_class=2; symbol=FATB; full_name=fatty acyl-ACP thioesterases B; computational_description=fatty acyl-ACP thioesterases B (FATB)%3B CONTAINS InterPro DOMAIN/s: Acyl-ACP-thioesterase%2C N-terminal domain (InterPro:IPR021113)%2C Acyl-ACP thioesterase (InterPro:IPR002864)%3B BEST Arabidopsis thaliana protein match is: fatA acyl-ACP thioesterase (TAIR:AT3G25110.1)%3B Has 1275 Blast hits to 1274 proteins in 533 species: Archae - 0%3B Bacteria - 944%3B Metazoa - 0%3B Fungi - 0%3B Plants - 322%3B Viruses - 0%3B Other Eukaryotes - 9 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12061798, PMID:14576160, PMID:15272873, PMID:15466222, PMID:15574398, PMID:15596101, PMID:16299169, PMID:17573542, PMID:18263779, PMID:18775970, PMID:18952782, PMID:21731053, PMID:22203212, PMID:22312320, PMID:22866055, PMID:23505340, locus:2201786; locus_type=protein_coding
AT1G08520.1	chr1:002696538	0.0	W/2696538-2696810,2697015-2697193,2697283-2697367,2697453-2697769,2697872-2697995,2698111-2698203,2698627-2698722,2698971-2699114,2699194-2699400,2699467-2699622,2699813-2699920,2700021-2700155,2700255-2700413,2700518-2700638,2700734-2700819	AT1G08520.1 CDS AT1G08520 ID=AT1G08520.1; Parent=AT1G08520; Name=AT1G08520.1; Note=ALBINA 1; curator_summary=Encodes the CHLD subunit of the Mg-chelatase enzyme involved in chlorophyll biosynthesis. Lines carrying recessive mutations of this locus are white and seedling lethal.; conf_class=2; symbol=ALB1; Alias=ALB-1V, CHLD, PDE166, PIGMENT DEFECTIVE EMBRYO 166, V157; full_name=ALBINA 1; computational_description=ALBINA 1 (ALB1)%3B FUNCTIONS IN: magnesium chelatase activity%2C nucleoside-triphosphatase activity%2C nucleotide binding%2C ATP binding%3B INVOLVED IN: chlorophyll biosynthetic process%3B LOCATED IN: magnesium chelatase complex%2C chloroplast%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C Magnesium chelatase%2C ChlI subunit (InterPro:IPR000523)%2C Magnesium chelatase%2C ATPase subunit D (InterPro:IPR011776)%2C von Willebrand factor%2C type A (InterPro:IPR002035)%3B BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G18480.1)%3B Has 11508 Blast hits to 8193 proteins in 1580 species: Archae - 212%3B Bacteria - 4110%3B Metazoa - 3314%3B Fungi - 479%3B Plants - 476%3B Viruses - 191%3B Other Eukaryotes - 2726 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:8631249, PMID:9418040, PMID:12750343, PMID:12777052, PMID:14576160, PMID:15326282, PMID:15632054, PMID:15815918, PMID:17355434, PMID:18650403, PMID:18846290, PMID:18846282, PMID:19812694, PMID:23011401, locus:2201796; locus_type=protein_coding
AT1G08530.1	chr1:002701252	0.0	W/2701252-2701593,2701692-2701742,2702262-2702395,2702581-2702681,2702807-2702952	AT1G08530.1 CDS AT1G08530 ID=AT1G08530.1; Parent=AT1G08530; Name=AT1G08530.1; Note=chitinase-like protein; conf_class=1; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G09995.2)%3B Has 140 Blast hits to 140 proteins in 53 species: Archae - 0%3B Bacteria - 63%3B Metazoa - 0%3B Fungi - 0%3B Plants - 76%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14576160, locus:2025630; locus_type=protein_coding
AT1G08530.2	chr1:002701252	0.0	W/2701252-2701593,2701692-2701742,2702262-2702441	AT1G08530.2 CDS AT1G08530 ID=AT1G08530.2; Parent=AT1G08530; Name=AT1G08530.2; Note=chitinase-like protein; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G09995.2)%3B Has 140 Blast hits to 140 proteins in 53 species: Archae - 0%3B Bacteria - 63%3B Metazoa - 0%3B Fungi - 0%3B Plants - 76%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; Dbxref=PMID:14576160, locus:2025630; locus_type=protein_coding
AT1G08530.3	chr1:002701252	0.0	W/2701252-2701593,2701692-2701742,2702262-2702395,2702581-2702776	AT1G08530.3 CDS AT1G08530 ID=AT1G08530.3; Parent=AT1G08530; Name=AT1G08530.3; Note=chitinase-like protein; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G09995.2)%3B Has 140 Blast hits to 140 proteins in 53 species: Archae - 0%3B Bacteria - 63%3B Metazoa - 0%3B Fungi - 0%3B Plants - 76%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; Dbxref=PMID:14576160, locus:2025630; locus_type=protein_coding
AT1G08540.1	chr1:002703461	0.0	W/2703461-2703539,2704080-2704261,2704495-2705091,2705537-2705767,2705879-2706019,2706106-2706306,2706409-2706696	AT1G08540.1 CDS AT1G08540 ID=AT1G08540.1; Parent=AT1G08540; Name=AT1G08540.1; Note=RNApolymerase sigma subunit 2; curator_summary=Enodes a subunit of chloroplast RNA polymerase%2C confers the ability to recognize promoter sequences on the core enzyme. SIG1 is induced by red and blue light.; conf_class=2; symbol=SIG2; Alias=ABC1, ATSIG1, SIGMA FACTOR 1, ATSIG2, SIGMA FACTOR 2, SIG1, RNA POLYMERASE SIGMA SUBUNIT 1, SIGA, SIGB, SIGMA FACTOR B; full_name=RNApolymerase sigma subunit 2; computational_description=RNApolymerase sigma subunit 2 (SIG2)%3B CONTAINS InterPro DOMAIN/s: RNA polymerase sigma factor%2C region 2 (InterPro:IPR013325)%2C Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991)%2C RNA polymerase sigma-70 region 3 (InterPro:IPR007624)%2C RNA polymerase sigma-70 (InterPro:IPR014284)%2C RNA polymerase sigma factor%2C region 3/4 (InterPro:IPR013324)%2C RNA polymerase sigma-70 region 1.2 (InterPro:IPR009042)%2C RNA polymerase sigma-70 factor (InterPro:IPR000943)%2C RNA polymerase sigma factor%2C SigB/SigC/SigD%2C plastid (InterPro:IPR016262)%2C RNA polymerase sigma-70 region 2 (InterPro:IPR007627)%2C RNA polymerase sigma-70 region 4 (InterPro:IPR007630)%3B BEST Arabidopsis thaliana protein match is: RNApolymerase sigma-subunit F (TAIR:AT2G36990.1)%3B Has 24116 Blast hits to 24030 proteins in 2811 species: Archae - 0%3B Bacteria - 17119%3B Metazoa - 4%3B Fungi - 2%3B Plants - 243%3B Viruses - 12%3B Other Eukaryotes - 6736 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10733966, PMID:10555304, PMID:10329472, PMID:9405719, PMID:9280303, PMID:11673617, PMID:11167008, PMID:12602869, PMID:14654684, PMID:14976253, PMID:18532976, PMID:18650403, PMID:21554328, PMID:22527751, PMID:22950756, PMID:23202891, PMID:23754813, PMID:25680513, locus:2025650; locus_type=protein_coding
AT1G08550.1	chr1:002707462	0.0	W/2707462-2707677,2707755-2707921,2708187-2708283,2708388-2708782,2708874-2709387	AT1G08550.1 CDS AT1G08550 ID=AT1G08550.1; Parent=AT1G08550; Name=AT1G08550.1; Note=non-photochemical quenching 1; curator_summary=Violaxanthin deepoxidase involved in xanthophyll cycle.Two major consequences of the npq1 mutation are the absence of zeaxanthin formation in strong light and the partial inhibition of the quenching of singlet excited chlorophylls in the photosystem II light-harvesting complex; conf_class=2; symbol=NPQ1; Alias=AVDE1, ARABIDOPSIS VIOLAXANTHIN DE-EPOXIDASE 1; full_name=non-photochemical quenching 1; computational_description=non-photochemical quenching 1 (NPQ1)%3B FUNCTIONS IN: violaxanthin de-epoxidase activity%3B INVOLVED IN: fatty acid metabolic process%2C response to heat%2C chlorophyll metabolic process%2C xanthophyll metabolic process%2C xanthophyll cycle%3B LOCATED IN: thylakoid lumen%2C chloroplast thylakoid lumen%2C chloroplast photosystem II%2C chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Lipocalin conserved site (InterPro:IPR022272)%2C Calycin (InterPro:IPR012674)%2C Violaxanthin de-epoxidase (InterPro:IPR010788)%2C Calycin-like (InterPro:IPR011038)%3B BEST Arabidopsis thaliana protein match is: violaxanthin de-epoxidase-related (TAIR:AT2G21860.1)%3B Has 258 Blast hits to 254 proteins in 55 species: Archae - 0%3B Bacteria - 9%3B Metazoa - 2%3B Fungi - 0%3B Plants - 212%3B Viruses - 0%3B Other Eukaryotes - 35 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10982442, PMID:10944157, PMID:10750712, PMID:10588066, PMID:10411949, PMID:10364413, PMID:9668132, PMID:9624110, PMID:11719511, PMID:11439133, PMID:12447545, PMID:11058750, PMID:11722132, PMID:12972657, PMID:14576287, PMID:15662017, PMID:15749754, PMID:15923322, PMID:15821287, PMID:16258032, PMID:16418232, PMID:16701678, PMID:16913871, PMID:16896791, PMID:17351115, PMID:17416642, PMID:17932304, PMID:18650403, PMID:19011000, PMID:19118124, PMID:19549928, PMID:18070876, PMID:19638474, PMID:19617542, PMID:20127930, PMID:19965965, PMID:20964339, PMID:20100799, PMID:21340700, PMID:21481232, PMID:21803939, PMID:22428135, PMID:22372667, PMID:22771437, PMID:22860767, PMID:23837879, PMID:24033721, PMID:25429003, PMID:25422428, locus:2025510; locus_type=protein_coding
AT1G08550.2	chr1:002707462	0.0	W/2707462-2707677,2707755-2707921,2708187-2708283,2708388-2708782,2708874-2709387	AT1G08550.2 CDS AT1G08550 ID=AT1G08550.2; Parent=AT1G08550; Name=AT1G08550.2; Note=non-photochemical quenching 1; curator_summary=Violaxanthin deepoxidase involved in xanthophyll cycle.Two major consequences of the npq1 mutation are the absence of zeaxanthin formation in strong light and the partial inhibition of the quenching of singlet excited chlorophylls in the photosystem II light-harvesting complex; conf_class=1; symbol=NPQ1; Alias=AVDE1, ARABIDOPSIS VIOLAXANTHIN DE-EPOXIDASE 1; full_name=non-photochemical quenching 1; computational_description=non-photochemical quenching 1 (NPQ1)%3B FUNCTIONS IN: violaxanthin de-epoxidase activity%3B INVOLVED IN: fatty acid metabolic process%2C response to heat%2C chlorophyll metabolic process%2C xanthophyll metabolic process%2C xanthophyll cycle%3B LOCATED IN: thylakoid lumen%2C chloroplast thylakoid lumen%2C chloroplast photosystem II%2C chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Lipocalin conserved site (InterPro:IPR022272)%2C Calycin (InterPro:IPR012674)%2C Violaxanthin de-epoxidase (InterPro:IPR010788)%2C Calycin-like (InterPro:IPR011038)%3B BEST Arabidopsis thaliana protein match is: violaxanthin de-epoxidase-related (TAIR:AT2G21860.1)%3B Has 258 Blast hits to 254 proteins in 55 species: Archae - 0%3B Bacteria - 9%3B Metazoa - 2%3B Fungi - 0%3B Plants - 212%3B Viruses - 0%3B Other Eukaryotes - 35 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:10982442, PMID:10944157, PMID:10750712, PMID:10588066, PMID:10411949, PMID:10364413, PMID:9668132, PMID:9624110, PMID:11719511, PMID:11439133, PMID:12447545, PMID:11058750, PMID:11722132, PMID:12972657, PMID:14576287, PMID:15662017, PMID:15749754, PMID:15923322, PMID:15821287, PMID:16258032, PMID:16418232, PMID:16701678, PMID:16913871, PMID:16896791, PMID:17351115, PMID:17416642, PMID:17932304, PMID:18650403, PMID:19011000, PMID:19118124, PMID:19549928, PMID:18070876, PMID:19638474, PMID:19617542, PMID:20127930, PMID:19965965, PMID:20964339, PMID:20100799, PMID:21340700, PMID:21481232, PMID:21803939, PMID:22428135, PMID:22372667, PMID:22771437, PMID:22860767, PMID:23837879, PMID:24033721, PMID:25429003, PMID:25422428, locus:2025510; locus_type=protein_coding
AT1G08550.3	chr1:002707462	0.0	W/2707462-2707677,2707755-2707921,2708187-2708283,2708388-2708782,2708874-2709387	AT1G08550.3 CDS AT1G08550 ID=AT1G08550.3; Parent=AT1G08550; Name=AT1G08550.3; Note=non-photochemical quenching 1; symbol=NPQ1; Alias=AVDE1, ARABIDOPSIS VIOLAXANTHIN DE-EPOXIDASE 1; full_name=non-photochemical quenching 1; Dbxref=PMID:10982442, PMID:10944157, PMID:10750712, PMID:10588066, PMID:10411949, PMID:10364413, PMID:9668132, PMID:9624110, PMID:11719511, PMID:11439133, PMID:12447545, PMID:11058750, PMID:11722132, PMID:12972657, PMID:14576287, PMID:15662017, PMID:15749754, PMID:15923322, PMID:15821287, PMID:16258032, PMID:16418232, PMID:16701678, PMID:16913871, PMID:16896791, PMID:17351115, PMID:17416642, PMID:17932304, PMID:18650403, PMID:19011000, PMID:19118124, PMID:19549928, PMID:18070876, PMID:19638474, PMID:19617542, PMID:20127930, PMID:19965965, PMID:20964339, PMID:20100799, PMID:21340700, PMID:21481232, PMID:21803939, PMID:22428135, PMID:22372667, PMID:22771437, PMID:22860767, PMID:23837879, PMID:24033721, PMID:25429003, PMID:25422428, locus:2025510; curator_summary=Violaxanthin deepoxidase involved in xanthophyll cycle.Two major consequences of the npq1 mutation are the absence of zeaxanthin formation in strong light and the partial inhibition of the quenching of singlet excited chlorophylls in the photosystem II light-harvesting complex; computational_description=non-photochemical quenching 1 (NPQ1)%3B FUNCTIONS IN: violaxanthin de-epoxidase activity%3B INVOLVED IN: fatty acid metabolic process%2C response to heat%2C chlorophyll metabolic process%2C xanthophyll metabolic process%2C xanthophyll cycle%3B LOCATED IN: thylakoid lumen%2C chloroplast thylakoid lumen%2C chloroplast photosystem II%2C chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Lipocalin conserved site (InterPro:IPR022272)%2C Calycin (InterPro:IPR012674)%2C Violaxanthin de-epoxidase (InterPro:IPR010788)%2C Calycin-like (InterPro:IPR011038)%3B BEST Arabidopsis thaliana protein match is: violaxanthin de-epoxidase-related (TAIR:AT2G21860.1)%3B Has 258 Blast hits to 254 proteins in 55 species: Archae - 0%3B Bacteria - 9%3B Metazoa - 2%3B Fungi - 0%3B Plants - 212%3B Viruses - 0%3B Other Eukaryotes - 35 (source: NCBI BLink).; locus_type=protein_coding
AT1G08560.1	chr1:002709778	0.0	C/2709778-2710710	AT1G08560.1 CDS AT1G08560 ID=AT1G08560.1; Parent=AT1G08560; Name=AT1G08560.1; Note=syntaxin of plants 111; curator_summary=member of SYP11 syntaxin Gene Family; conf_class=2; symbol=SYP111; Alias=ATSYP111, KN, KNOLLE; full_name=syntaxin of plants 111; computational_description=syntaxin of plants 111 (SYP111)%3B FUNCTIONS IN: SNAP receptor activity%3B INVOLVED IN: intracellular protein transport%2C response to cyclopentenone%2C cellular membrane fusion%3B LOCATED IN: endomembrane system%2C plasma membrane%2C phragmoplast%2C cell plate%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727)%2C t-SNARE (InterPro:IPR010989)%2C Syntaxin/epimorphin%2C conserved site (InterPro:IPR006012)%2C Syntaxin%2C N-terminal (InterPro:IPR006011)%3B BEST Arabidopsis thaliana protein match is: syntaxin of plants 124 (TAIR:AT1G61290.1)%3B Has 2504 Blast hits to 2496 proteins in 285 species: Archae - 12%3B Bacteria - 41%3B Metazoa - 1133%3B Fungi - 466%3B Plants - 469%3B Viruses - 2%3B Other Eukaryotes - 381 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10099932, PMID:9396754, PMID:8548827, PMID:7948864, PMID:11084337, PMID:11080595, PMID:11115874, PMID:11591731, PMID:11157980, PMID:11311933, PMID:11516663, PMID:12239400, PMID:17287251, PMID:17662029, PMID:18239134, PMID:18334669, PMID:17997308, PMID:19794113, PMID:19959995, PMID:20543027, PMID:21051940, PMID:21270057, PMID:21707889, PMID:21862669, PMID:21838778, PMID:21896643, PMID:22089884, PMID:22595672, PMID:23515225, PMID:24556609, PMID:25619248, locus:2025620; locus_type=protein_coding
AT1TE08830	chr1:002711389	0.0	C/2711389-2712022	AT1TE08830 transposable_element AT1TE08830 ID=AT1TE08830; Name=AT1TE08830; Alias=HELITRONY1D
AT1G08570.1	chr1:002713059	0.0	W/2713059-2713295,2713547-2713723,2713809-2713973,2714064-2714312	AT1G08570.1 CDS AT1G08570 ID=AT1G08570.1; Parent=AT1G08570; Name=AT1G08570.1; Note=atypical CYS HIS rich thioredoxin 4; curator_summary=Encodes a member of the thioredoxin family protein. Located in the chloroplast. Shows high activity towards the chloroplast 2-Cys peroxiredoxin A%2C and poor activity towards the chloroplast NADP-malate dehydrogenase.; conf_class=2; symbol=ACHT4; full_name=atypical CYS HIS rich thioredoxin 4; computational_description=atypical CYS HIS rich thioredoxin 4 (ACHT4)%3B FUNCTIONS IN: oxidoreductase activity%2C acting on sulfur group of donors%2C disulfide as acceptor%3B INVOLVED IN: cell redox homeostasis%3B LOCATED IN: chloroplast membrane%2C chloroplast%2C chloroplast stroma%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335)%2C Thioredoxin%2C core (InterPro:IPR015467)%2C Thioredoxin-like (InterPro:IPR017936)%2C Thioredoxin domain (InterPro:IPR013766)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B BEST Arabidopsis thaliana protein match is: atypical CYS HIS rich thioredoxin 3 (TAIR:AT2G33270.1)%3B Has 2532 Blast hits to 2524 proteins in 582 species: Archae - 19%3B Bacteria - 596%3B Metazoa - 625%3B Fungi - 365%3B Plants - 524%3B Viruses - 3%3B Other Eukaryotes - 400 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15908603, PMID:17031546, PMID:18231654, PMID:18230142, PMID:18305208, PMID:18650403, PMID:19109414, locus:2025625; locus_type=protein_coding
AT1G08570.2	chr1:002713059	0.0	W/2713059-2713142,2713236-2713295,2713547-2713723,2713809-2713973,2714064-2714312	AT1G08570.2 CDS AT1G08570 ID=AT1G08570.2; Parent=AT1G08570; Name=AT1G08570.2; Note=atypical CYS HIS rich thioredoxin 4; curator_summary=Encodes a member of the thioredoxin family protein. Located in the chloroplast. Shows high activity towards the chloroplast 2-Cys peroxiredoxin A%2C and poor activity towards the chloroplast NADP-malate dehydrogenase.; conf_class=2; symbol=ACHT4; full_name=atypical CYS HIS rich thioredoxin 4; computational_description=atypical CYS HIS rich thioredoxin 4 (ACHT4)%3B FUNCTIONS IN: oxidoreductase activity%2C acting on sulfur group of donors%2C disulfide as acceptor%3B INVOLVED IN: cell redox homeostasis%3B LOCATED IN: chloroplast membrane%2C chloroplast%2C chloroplast stroma%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335)%2C Thioredoxin%2C core (InterPro:IPR015467)%2C Thioredoxin-like (InterPro:IPR017936)%2C Thioredoxin domain (InterPro:IPR013766)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B BEST Arabidopsis thaliana protein match is: atypical CYS HIS rich thioredoxin 3 (TAIR:AT2G33270.1)%3B Has 2532 Blast hits to 2524 proteins in 582 species: Archae - 19%3B Bacteria - 596%3B Metazoa - 625%3B Fungi - 365%3B Plants - 524%3B Viruses - 3%3B Other Eukaryotes - 400 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15908603, PMID:17031546, PMID:18231654, PMID:18230142, PMID:18305208, PMID:18650403, PMID:19109414, locus:2025625; locus_type=protein_coding
AT1G08570.3	chr1:002713604	0.0	W/2713604-2713723,2713809-2713973,2714064-2714312	AT1G08570.3 CDS AT1G08570 ID=AT1G08570.3; Parent=AT1G08570; Name=AT1G08570.3; Note=atypical CYS HIS rich thioredoxin 4; curator_summary=Encodes a member of the thioredoxin family protein. Located in the chloroplast. Shows high activity towards the chloroplast 2-Cys peroxiredoxin A%2C and poor activity towards the chloroplast NADP-malate dehydrogenase.; conf_class=2; symbol=ACHT4; full_name=atypical CYS HIS rich thioredoxin 4; computational_description=atypical CYS HIS rich thioredoxin 4 (ACHT4)%3B FUNCTIONS IN: oxidoreductase activity%2C acting on sulfur group of donors%2C disulfide as acceptor%3B INVOLVED IN: cell redox homeostasis%3B LOCATED IN: chloroplast membrane%2C chloroplast%2C chloroplast stroma%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335)%2C Thioredoxin%2C core (InterPro:IPR015467)%2C Thioredoxin-like (InterPro:IPR017936)%2C Thioredoxin domain (InterPro:IPR013766)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B BEST Arabidopsis thaliana protein match is: atypical CYS HIS rich thioredoxin 3 (TAIR:AT2G33270.1)%3B Has 2532 Blast hits to 2524 proteins in 582 species: Archae - 19%3B Bacteria - 596%3B Metazoa - 625%3B Fungi - 365%3B Plants - 524%3B Viruses - 3%3B Other Eukaryotes - 400 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15908603, PMID:17031546, PMID:18231654, PMID:18230142, PMID:18305208, PMID:18650403, PMID:19109414, locus:2025625; locus_type=protein_coding
AT1G08570.4	chr1:002713604	0.0	W/2713604-2713723,2713809-2713973,2714064-2714312	AT1G08570.4 CDS AT1G08570 ID=AT1G08570.4; Parent=AT1G08570; Name=AT1G08570.4; Note=atypical CYS HIS rich thioredoxin 4; curator_summary=Encodes a member of the thioredoxin family protein. Located in the chloroplast. Shows high activity towards the chloroplast 2-Cys peroxiredoxin A%2C and poor activity towards the chloroplast NADP-malate dehydrogenase.; conf_class=1; symbol=ACHT4; full_name=atypical CYS HIS rich thioredoxin 4; computational_description=atypical CYS HIS rich thioredoxin 4 (ACHT4)%3B FUNCTIONS IN: oxidoreductase activity%2C acting on sulfur group of donors%2C disulfide as acceptor%3B INVOLVED IN: cell redox homeostasis%3B LOCATED IN: chloroplast membrane%2C chloroplast%2C chloroplast stroma%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335)%2C Thioredoxin%2C core (InterPro:IPR015467)%2C Thioredoxin-like (InterPro:IPR017936)%2C Thioredoxin domain (InterPro:IPR013766)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B BEST Arabidopsis thaliana protein match is: atypical CYS HIS rich thioredoxin 3 (TAIR:AT2G33270.1)%3B Has 2532 Blast hits to 2524 proteins in 582 species: Archae - 19%3B Bacteria - 596%3B Metazoa - 625%3B Fungi - 365%3B Plants - 524%3B Viruses - 3%3B Other Eukaryotes - 400 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15908603, PMID:17031546, PMID:18231654, PMID:18230142, PMID:18305208, PMID:18650403, PMID:19109414, locus:2025625; locus_type=protein_coding
AT1G08580.1	chr1:002715296	0.0	C/2715296-2715357,2715474-2715554,2715943-2716009,2716190-2716351	AT1G08580.1 CDS AT1G08580 ID=AT1G08580.1; Parent=AT1G08580; Name=AT1G08580.1; Note=hypothetical protein; conf_class=2; computational_description=unknown protein%3B Has 39 Blast hits to 39 proteins in 15 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 35%3B Viruses - 0%3B Other Eukaryotes - 4 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2025525; locus_type=protein_coding
AT1G08592.1	chr1:002718616	0.0	C/2718616-2721910	AT1G08592.1 antisense_lncRNA AT1G08592 ID=AT1G08592.1; Parent=AT1G08592; curator_summary=Potential natural antisense gene%2C locus overlaps with AT1G08590; Dbxref=locus:6530298134; Name=AT1G08592.1; description=Natural antisense transcript overlaps with AT1G08590; Note=Natural antisense transcript overlaps with AT1G08590; locus_type=antisense_long_noncoding_rna
AT1G08590.1	chr1:002718859	0.0	W/2718859-2721948	AT1G08590.1 CDS AT1G08590 ID=AT1G08590.1; Parent=AT1G08590; Name=AT1G08590.1; Note=Leucine-rich receptor-like protein kinase family protein; curator_summary=Encodes one of the two putative eLRR kinase closely related to PXY (At1g08590/PXL1 and At4g28650/PXL2). Insertion mutants in either pxl1 or pxl2 do not exhibit an obvious phenotype in the stem%3B double-mutant combinations of a Col allele%2C of pxy (pxy-3) with pxl1 and pxl2%2C generate a more severe vascular phenotype than pxy-3 alone%2C suggesting that these genes act synergistically with PXY in regulating vascular-tissue development in the stem.; conf_class=1; Alias=ATPXL1, PHLOEM INTERCALATED WITH XYLEM-LIKE 1, PXL1, PXY-like1; computational_description=Leucine-rich receptor-like protein kinase family protein%3B FUNCTIONS IN: kinase activity%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: hypocotyl%2C root%2C leaf%3B EXPRESSED DURING: LP.08 eight leaves visible%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Leucine-rich repeat-containing N-terminal domain%2C type 2 (InterPro:IPR013210)%2C Leucine-rich repeat (InterPro:IPR001611)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase family protein (TAIR:AT4G28650.1)%3B Has 238620 Blast hits to 145276 proteins in 3605 species: Archae - 165%3B Bacteria - 22033%3B Metazoa - 74123%3B Fungi - 11983%3B Plants - 100762%3B Viruses - 458%3B Other Eukaryotes - 29096 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12972053, PMID:16527868, PMID:17570668, PMID:20179141, PMID:21431781, PMID:21477822, PMID:23578929, locus:2025545; locus_type=protein_coding
AT1G08592.2	chr1:002718875	0.0	C/2718875-2721676	AT1G08592.2 antisense_lncRNA AT1G08592 ID=AT1G08592.2; Parent=AT1G08592; Name=AT1G08592.2; description=Natural antisense transcript overlaps with AT1G08590; curator_summary=Potential natural antisense gene%2C locus overlaps with AT1G08590; Note=Natural antisense transcript overlaps with AT1G08590; Dbxref=locus:6530298134; locus_type=antisense_long_noncoding_rna
AT1G08600.1	chr1:002724562	0.0	W/2724562-2724876,2724961-2725023,2725122-2725217,2725300-2725392,2725503-2725693,2725778-2726021,2726533-2726646,2726950-2727033,2727448-2727801,2728250-2728563,2728659-2728749,2728855-2729064,2729216-2729335,2729475-2729671,2730095-2730143,2730402-2730551,2730636-2730691,2730782-2731079,2731223-2731352,2731763-2731818,2731933-2732159,2732240-2732443,2732527-2732605,2732693-2732952,2733050-2733431	AT1G08600.1 CDS AT1G08600 ID=AT1G08600.1; Parent=AT1G08600; Name=AT1G08600.1; Note=P-loop containing nucleoside triphosphate hydrolases superfamily protein; conf_class=3; symbol=ATRX; computational_description=ATRX%3B FUNCTIONS IN: helicase activity%2C DNA binding%2C nucleic acid binding%2C ATP binding%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: DEAD-like helicase%2C N-terminal (InterPro:IPR014001)%2C DNA/RNA helicase%2C C-terminal (InterPro:IPR001650)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain (InterPro:IPR014021)%2C SNF2-related (InterPro:IPR000330)%3B BEST Arabidopsis thaliana protein match is: homolog of RAD54 (TAIR:AT3G19210.1)%3B Has 31658 Blast hits to 23484 proteins in 2032 species: Archae - 346%3B Bacteria - 7271%3B Metazoa - 9089%3B Fungi - 4970%3B Plants - 2206%3B Viruses - 434%3B Other Eukaryotes - 7342 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16489130, PMID:16547115, PMID:17227544, PMID:18310306, PMID:18775970, PMID:21670303, locus:2025560; locus_type=protein_coding
AT1G08600.2	chr1:002724562	0.0	W/2724562-2724876,2724961-2725023,2725122-2725217,2725300-2725392,2725503-2725693,2725778-2726021,2726533-2726646,2726950-2727033,2727448-2727801,2728250-2728563,2728659-2728749,2728855-2729064,2729216-2729335,2729475-2729641,2730002-2730143,2730402-2730551,2730636-2730691,2730782-2731079,2731223-2731352,2731763-2731818,2731933-2732159,2732240-2732443,2732527-2732605,2732693-2732952,2733050-2733431	AT1G08600.2 CDS AT1G08600 ID=AT1G08600.2; Parent=AT1G08600; Name=AT1G08600.2; Note=P-loop containing nucleoside triphosphate hydrolases superfamily protein; conf_class=3; symbol=ATRX; computational_description=ATRX%3B FUNCTIONS IN: helicase activity%2C DNA binding%2C nucleic acid binding%2C ATP binding%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: DEAD-like helicase%2C N-terminal (InterPro:IPR014001)%2C DNA/RNA helicase%2C C-terminal (InterPro:IPR001650)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain (InterPro:IPR014021)%2C SNF2-related (InterPro:IPR000330)%3B BEST Arabidopsis thaliana protein match is: homolog of RAD54 (TAIR:AT3G19210.1)%3B Has 31658 Blast hits to 23484 proteins in 2032 species: Archae - 346%3B Bacteria - 7271%3B Metazoa - 9089%3B Fungi - 4970%3B Plants - 2206%3B Viruses - 434%3B Other Eukaryotes - 7342 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16489130, PMID:16547115, PMID:17227544, PMID:18310306, PMID:18775970, PMID:21670303, locus:2025560; locus_type=protein_coding
AT1G08600.3	chr1:002724562	0.0	W/2724562-2724876,2724961-2725023,2725122-2725217,2725300-2725392,2725503-2725693,2725778-2726021,2726533-2726646,2726950-2727033,2727448-2727801,2728250-2728563,2728659-2728749,2728855-2729064,2729216-2729335,2729475-2729641,2730002-2730143,2730402-2730551,2730636-2730691,2730782-2731079,2731223-2731352,2731763-2731818,2731933-2732159,2732240-2732443,2732527-2732605,2732693-2732952,2733050-2733431	AT1G08600.3 CDS AT1G08600 ID=AT1G08600.3; Parent=AT1G08600; Name=AT1G08600.3; Note=P-loop containing nucleoside triphosphate hydrolases superfamily protein; conf_class=3; symbol=ATRX; computational_description=ATRX%3B FUNCTIONS IN: helicase activity%2C DNA binding%2C nucleic acid binding%2C ATP binding%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: DEAD-like helicase%2C N-terminal (InterPro:IPR014001)%2C DNA/RNA helicase%2C C-terminal (InterPro:IPR001650)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain (InterPro:IPR014021)%2C SNF2-related (InterPro:IPR000330)%3B BEST Arabidopsis thaliana protein match is: homolog of RAD54 (TAIR:AT3G19210.1)%3B Has 31658 Blast hits to 23484 proteins in 2032 species: Archae - 346%3B Bacteria - 7271%3B Metazoa - 9089%3B Fungi - 4970%3B Plants - 2206%3B Viruses - 434%3B Other Eukaryotes - 7342 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16489130, PMID:16547115, PMID:17227544, PMID:18310306, PMID:18775970, PMID:21670303, locus:2025560; locus_type=protein_coding
AT1G08600.4	chr1:002724562	0.0	W/2724562-2724876,2724961-2725023,2725122-2725217,2725300-2725392,2725503-2725693,2725778-2726021,2726533-2726646,2726950-2727033,2727448-2727801,2728250-2728563,2728659-2728749,2728855-2729064,2729216-2729335,2729475-2729641,2730002-2730143,2730402-2730551,2730636-2730691,2730782-2731079,2731223-2731352,2731763-2731818,2731933-2732159,2732240-2732443,2732527-2732605,2732693-2732952,2733050-2733431	AT1G08600.4 CDS AT1G08600 ID=AT1G08600.4; Parent=AT1G08600; Name=AT1G08600.4; Note=P-loop containing nucleoside triphosphate hydrolases superfamily protein; conf_class=2; symbol=ATRX; computational_description=ATRX%3B FUNCTIONS IN: helicase activity%2C DNA binding%2C nucleic acid binding%2C ATP binding%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: DEAD-like helicase%2C N-terminal (InterPro:IPR014001)%2C DNA/RNA helicase%2C C-terminal (InterPro:IPR001650)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain (InterPro:IPR014021)%2C SNF2-related (InterPro:IPR000330)%3B BEST Arabidopsis thaliana protein match is: homolog of RAD54 (TAIR:AT3G19210.1)%3B Has 31658 Blast hits to 23484 proteins in 2032 species: Archae - 346%3B Bacteria - 7271%3B Metazoa - 9089%3B Fungi - 4970%3B Plants - 2206%3B Viruses - 434%3B Other Eukaryotes - 7342 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16489130, PMID:16547115, PMID:17227544, PMID:18310306, PMID:18775970, PMID:21670303, locus:2025560; locus_type=protein_coding
AT1G08610.1	chr1:002733788	0.0	C/2733788-2735467	AT1G08610.1 CDS AT1G08610 ID=AT1G08610.1; Parent=AT1G08610; Name=AT1G08610.1; Note=Pentatricopeptide repeat (PPR) superfamily protein; conf_class=4; computational_description=Pentatricopeptide repeat (PPR) superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR-like) superfamily protein (TAIR:AT1G09900.1)%3B Has 46651 Blast hits to 12655 proteins in 271 species: Archae - 5%3B Bacteria - 25%3B Metazoa - 357%3B Fungi - 448%3B Plants - 44319%3B Viruses - 0%3B Other Eukaryotes - 1497 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:15356332, PMID:15695462, locus:2025580; locus_type=protein_coding
AT1G04657.1	chr1:002736598	0.0	C/2736598-2736830	AT1G04657.1 lnc_RNA AT1G04657 ID=AT1G04657.1; Parent=AT1G04657; Name=AT1G04657.1; locus_type=long_noncoding_rna
AT1G08620.3	chr1:002737512	0.0	W/2737512-2737865,2737958-2738029,2738161-2738238,2738325-2738852,2738949-2739176,2739586-2739747,2740058-2740426,2740828-2742094,2742184-2742287,2742635-2742832,2743059-2743370	AT1G08620.3 CDS AT1G08620 ID=AT1G08620.3; Parent=AT1G08620; Name=AT1G08620.3; Note=Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein; symbol=PKDM7D; computational_description=PKDM7D%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347)%2C FY-rich%2C C-terminal (InterPro:IPR003889)%2C FY-rich%2C N-terminal (InterPro:IPR003888)%2C Transcription factor jumonji%2C JmjN (InterPro:IPR003349)%2C Zinc finger%2C C5HC2-type (InterPro:IPR004198)%2C FY-rich%2C C-terminal subgroup (InterPro:IPR018516)%2C Transcription factor jumonji (InterPro:IPR013129)%2C FY-rich%2C N-terminal subgroup (InterPro:IPR018518)%3B BEST Arabidopsis thaliana protein match is: Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (TAIR:AT1G30810.2)%3B Has 2173 Blast hits to 1649 proteins in 190 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 1159%3B Fungi - 446%3B Plants - 392%3B Viruses - 0%3B Other Eukaryotes - 174 (source: NCBI BLink).; Dbxref=PMID:11118137, PMID:15377760, PMID:17329565, PMID:18650403, PMID:18775970, PMID:20202164, PMID:24255109, locus:2025635; locus_type=protein_coding
AT1G08620.1	chr1:002737554	0.0	W/2737554-2737865,2737958-2738029,2738161-2738238,2738325-2738852,2738949-2739176,2739586-2739747,2740058-2740426,2740828-2742094,2742184-2742287,2742635-2742832,2743059-2743370	AT1G08620.1 CDS AT1G08620 ID=AT1G08620.1; Parent=AT1G08620; Name=AT1G08620.1; Note=Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein; conf_class=4; symbol=PKDM7D; computational_description=PKDM7D%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347)%2C FY-rich%2C C-terminal (InterPro:IPR003889)%2C FY-rich%2C N-terminal (InterPro:IPR003888)%2C Transcription factor jumonji%2C JmjN (InterPro:IPR003349)%2C Zinc finger%2C C5HC2-type (InterPro:IPR004198)%2C FY-rich%2C C-terminal subgroup (InterPro:IPR018516)%2C Transcription factor jumonji (InterPro:IPR013129)%2C FY-rich%2C N-terminal subgroup (InterPro:IPR018518)%3B BEST Arabidopsis thaliana protein match is: Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (TAIR:AT1G30810.2)%3B Has 2173 Blast hits to 1649 proteins in 190 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 1159%3B Fungi - 446%3B Plants - 392%3B Viruses - 0%3B Other Eukaryotes - 174 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:11118137, PMID:15377760, PMID:17329565, PMID:18650403, PMID:18775970, PMID:20202164, PMID:24255109, locus:2025635; locus_type=protein_coding
AT1G08620.2	chr1:002737554	0.0	W/2737554-2737865,2737958-2738029,2738161-2738238,2738325-2738852,2738949-2739176,2739586-2739747,2740058-2740426,2740828-2742094,2742184-2742287,2742635-2742832,2743059-2743370	AT1G08620.2 CDS AT1G08620 ID=AT1G08620.2; Parent=AT1G08620; Name=AT1G08620.2; Note=Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein; conf_class=4; symbol=PKDM7D; computational_description=PKDM7D%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347)%2C FY-rich%2C C-terminal (InterPro:IPR003889)%2C FY-rich%2C N-terminal (InterPro:IPR003888)%2C Transcription factor jumonji%2C JmjN (InterPro:IPR003349)%2C Zinc finger%2C C5HC2-type (InterPro:IPR004198)%2C FY-rich%2C C-terminal subgroup (InterPro:IPR018516)%2C Transcription factor jumonji (InterPro:IPR013129)%2C FY-rich%2C N-terminal subgroup (InterPro:IPR018518)%3B BEST Arabidopsis thaliana protein match is: Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (TAIR:AT1G30810.2)%3B Has 2173 Blast hits to 1649 proteins in 190 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 1159%3B Fungi - 446%3B Plants - 392%3B Viruses - 0%3B Other Eukaryotes - 174 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:11118137, PMID:15377760, PMID:17329565, PMID:18650403, PMID:18775970, PMID:20202164, PMID:24255109, locus:2025635; locus_type=protein_coding
AT1G08620.4	chr1:002737554	0.0	W/2737554-2737865,2737958-2738029,2738161-2738238,2738325-2738852,2738949-2739176,2739586-2739747,2740058-2740426,2740828-2742094,2742184-2742287,2742635-2742832,2743059-2743370	AT1G08620.4 CDS AT1G08620 ID=AT1G08620.4; Parent=AT1G08620; Name=AT1G08620.4; Note=Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein; symbol=PKDM7D; Dbxref=PMID:11118137, PMID:15377760, PMID:17329565, PMID:18650403, PMID:18775970, PMID:20202164, PMID:24255109, locus:2025635; computational_description=PKDM7D%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347)%2C FY-rich%2C C-terminal (InterPro:IPR003889)%2C FY-rich%2C N-terminal (InterPro:IPR003888)%2C Transcription factor jumonji%2C JmjN (InterPro:IPR003349)%2C Zinc finger%2C C5HC2-type (InterPro:IPR004198)%2C FY-rich%2C C-terminal subgroup (InterPro:IPR018516)%2C Transcription factor jumonji (InterPro:IPR013129)%2C FY-rich%2C N-terminal subgroup (InterPro:IPR018518)%3B BEST Arabidopsis thaliana protein match is: Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (TAIR:AT1G30810.2)%3B Has 2173 Blast hits to 1649 proteins in 190 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 1159%3B Fungi - 446%3B Plants - 392%3B Viruses - 0%3B Other Eukaryotes - 174 (source: NCBI BLink).; locus_type=protein_coding
AT1G08630.1	chr1:002743948	0.0	C/2743948-2743986,2744072-2744138,2744237-2744337,2744475-2744533,2744614-2744818,2744903-2744953,2745033-2745144,2745243-2745685	AT1G08630.1 CDS AT1G08630 ID=AT1G08630.1; Parent=AT1G08630; Name=AT1G08630.1; Note=threonine aldolase 1; curator_summary=Encodes a threonine aldolase%2C involved in threonine degradation to glycine. Primarily expressed in seeds and seedlings.; conf_class=3; symbol=THA1; full_name=threonine aldolase 1; computational_description=threonine aldolase 1 (THA1)%3B CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase%2C major domain (InterPro:IPR015424)%2C Aromatic amino acid beta-eliminating lyase/threonine aldolase (InterPro:IPR001597)%2C Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (InterPro:IPR015421)%2C Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (InterPro:IPR015422)%3B BEST Arabidopsis thaliana protein match is: threonine aldolase 2 (TAIR:AT3G04520.1)%3B Has 4107 Blast hits to 4101 proteins in 1235 species: Archae - 29%3B Bacteria - 2521%3B Metazoa - 93%3B Fungi - 250%3B Plants - 87%3B Viruses - 0%3B Other Eukaryotes - 1127 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14973164, PMID:15272001, PMID:17172352, PMID:18263779, PMID:18375600, PMID:18616834, PMID:18687588, PMID:23196394, locus:2025645; locus_type=protein_coding
AT1G08630.2	chr1:002743948	0.0	C/2743948-2743986,2744072-2744138,2744237-2744337,2744475-2744533,2744614-2744818,2744903-2744953,2745033-2745144,2745243-2745685	AT1G08630.2 CDS AT1G08630 ID=AT1G08630.2; Parent=AT1G08630; Name=AT1G08630.2; Note=threonine aldolase 1; curator_summary=Encodes a threonine aldolase%2C involved in threonine degradation to glycine. Primarily expressed in seeds and seedlings.; conf_class=3; symbol=THA1; full_name=threonine aldolase 1; computational_description=threonine aldolase 1 (THA1)%3B CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase%2C major domain (InterPro:IPR015424)%2C Aromatic amino acid beta-eliminating lyase/threonine aldolase (InterPro:IPR001597)%2C Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (InterPro:IPR015421)%2C Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (InterPro:IPR015422)%3B BEST Arabidopsis thaliana protein match is: threonine aldolase 2 (TAIR:AT3G04520.1)%3B Has 4107 Blast hits to 4101 proteins in 1235 species: Archae - 29%3B Bacteria - 2521%3B Metazoa - 93%3B Fungi - 250%3B Plants - 87%3B Viruses - 0%3B Other Eukaryotes - 1127 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14973164, PMID:15272001, PMID:17172352, PMID:18263779, PMID:18375600, PMID:18616834, PMID:18687588, PMID:23196394, locus:2025645; locus_type=protein_coding
AT1G08630.3	chr1:002743948	0.0	C/2743948-2743986,2744072-2744138,2744237-2744337,2744475-2744533,2744614-2744818,2744903-2744953,2745033-2745144,2745243-2745685	AT1G08630.3 CDS AT1G08630 ID=AT1G08630.3; Parent=AT1G08630; Name=AT1G08630.3; Note=threonine aldolase 1; curator_summary=Encodes a threonine aldolase%2C involved in threonine degradation to glycine. Primarily expressed in seeds and seedlings.; conf_class=3; symbol=THA1; full_name=threonine aldolase 1; computational_description=threonine aldolase 1 (THA1)%3B CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase%2C major domain (InterPro:IPR015424)%2C Aromatic amino acid beta-eliminating lyase/threonine aldolase (InterPro:IPR001597)%2C Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (InterPro:IPR015421)%2C Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (InterPro:IPR015422)%3B BEST Arabidopsis thaliana protein match is: threonine aldolase 2 (TAIR:AT3G04520.1)%3B Has 4107 Blast hits to 4101 proteins in 1235 species: Archae - 29%3B Bacteria - 2521%3B Metazoa - 93%3B Fungi - 250%3B Plants - 87%3B Viruses - 0%3B Other Eukaryotes - 1127 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14973164, PMID:15272001, PMID:17172352, PMID:18263779, PMID:18375600, PMID:18616834, PMID:18687588, PMID:23196394, locus:2025645; locus_type=protein_coding
AT1G08630.4	chr1:002743948	0.0	C/2743948-2743986,2744072-2744138,2744237-2744337,2744475-2744533,2744614-2744818,2744903-2744953,2745033-2745144,2745243-2745685	AT1G08630.4 CDS AT1G08630 ID=AT1G08630.4; Parent=AT1G08630; Name=AT1G08630.4; Note=threonine aldolase 1; curator_summary=Encodes a threonine aldolase%2C involved in threonine degradation to glycine. Primarily expressed in seeds and seedlings.; conf_class=3; symbol=THA1; full_name=threonine aldolase 1; computational_description=threonine aldolase 1 (THA1)%3B CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase%2C major domain (InterPro:IPR015424)%2C Aromatic amino acid beta-eliminating lyase/threonine aldolase (InterPro:IPR001597)%2C Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (InterPro:IPR015421)%2C Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (InterPro:IPR015422)%3B BEST Arabidopsis thaliana protein match is: threonine aldolase 2 (TAIR:AT3G04520.1)%3B Has 4107 Blast hits to 4101 proteins in 1235 species: Archae - 29%3B Bacteria - 2521%3B Metazoa - 93%3B Fungi - 250%3B Plants - 87%3B Viruses - 0%3B Other Eukaryotes - 1127 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14973164, PMID:15272001, PMID:17172352, PMID:18263779, PMID:18375600, PMID:18616834, PMID:18687588, PMID:23196394, locus:2025645; locus_type=protein_coding
AT1G08630.5	chr1:002743948	0.0	C/2743948-2743986,2744072-2744138,2744237-2744337,2744475-2744491,2744614-2744818,2744903-2744953,2745033-2745144,2745243-2745685	AT1G08630.5 CDS AT1G08630 ID=AT1G08630.5; Parent=AT1G08630; Name=AT1G08630.5; Note=threonine aldolase 1; curator_summary=Encodes a threonine aldolase%2C involved in threonine degradation to glycine. Primarily expressed in seeds and seedlings.; conf_class=3; symbol=THA1; full_name=threonine aldolase 1; computational_description=threonine aldolase 1 (THA1)%3B CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase%2C major domain (InterPro:IPR015424)%2C Aromatic amino acid beta-eliminating lyase/threonine aldolase (InterPro:IPR001597)%2C Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (InterPro:IPR015421)%2C Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (InterPro:IPR015422)%3B BEST Arabidopsis thaliana protein match is: threonine aldolase 2 (TAIR:AT3G04520.1)%3B Has 4107 Blast hits to 4101 proteins in 1235 species: Archae - 29%3B Bacteria - 2521%3B Metazoa - 93%3B Fungi - 250%3B Plants - 87%3B Viruses - 0%3B Other Eukaryotes - 1127 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14973164, PMID:15272001, PMID:17172352, PMID:18263779, PMID:18375600, PMID:18616834, PMID:18687588, PMID:23196394, locus:2025645; locus_type=protein_coding
AT1G08630.6	chr1:002743948	0.0	C/2743948-2743986,2744072-2744138,2744237-2744337,2744475-2744533,2744614-2744818,2744903-2744953,2745033-2745144,2745243-2745685	AT1G08630.6 CDS AT1G08630 ID=AT1G08630.6; Parent=AT1G08630; Name=AT1G08630.6; Note=threonine aldolase 1; symbol=THA1; full_name=threonine aldolase 1; Dbxref=PMID:14973164, PMID:15272001, PMID:17172352, PMID:18263779, PMID:18375600, PMID:18616834, PMID:18687588, PMID:23196394, locus:2025645; curator_summary=Encodes a threonine aldolase%2C involved in threonine degradation to glycine. Primarily expressed in seeds and seedlings.; computational_description=threonine aldolase 1 (THA1)%3B CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase%2C major domain (InterPro:IPR015424)%2C Aromatic amino acid beta-eliminating lyase/threonine aldolase (InterPro:IPR001597)%2C Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (InterPro:IPR015421)%2C Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (InterPro:IPR015422)%3B BEST Arabidopsis thaliana protein match is: threonine aldolase 2 (TAIR:AT3G04520.1)%3B Has 4107 Blast hits to 4101 proteins in 1235 species: Archae - 29%3B Bacteria - 2521%3B Metazoa - 93%3B Fungi - 250%3B Plants - 87%3B Viruses - 0%3B Other Eukaryotes - 1127 (source: NCBI BLink).; locus_type=protein_coding
AT1G08630.7	chr1:002743948	0.0	C/2743948-2743986,2744072-2744138,2744237-2744337,2744475-2744533,2744614-2744818,2744903-2744953,2745033-2745144,2745243-2745628	AT1G08630.7 CDS AT1G08630 ID=AT1G08630.7; Parent=AT1G08630; Name=AT1G08630.7; Note=threonine aldolase 1; symbol=THA1; full_name=threonine aldolase 1; curator_summary=Encodes a threonine aldolase%2C involved in threonine degradation to glycine. Primarily expressed in seeds and seedlings.; computational_description=threonine aldolase 1 (THA1)%3B CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase%2C major domain (InterPro:IPR015424)%2C Aromatic amino acid beta-eliminating lyase/threonine aldolase (InterPro:IPR001597)%2C Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (InterPro:IPR015421)%2C Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (InterPro:IPR015422)%3B BEST Arabidopsis thaliana protein match is: threonine aldolase 2 (TAIR:AT3G04520.1)%3B Has 4107 Blast hits to 4101 proteins in 1235 species: Archae - 29%3B Bacteria - 2521%3B Metazoa - 93%3B Fungi - 250%3B Plants - 87%3B Viruses - 0%3B Other Eukaryotes - 1127 (source: NCBI BLink).; Dbxref=PMID:14973164, PMID:15272001, PMID:17172352, PMID:18263779, PMID:18375600, PMID:18616834, PMID:18687588, PMID:23196394, locus:2025645; locus_type=protein_coding
AT1G08640.1	chr1:002748714	0.0	C/2748714-2748776,2749191-2749262,2749482-2749577,2749676-2749801,2750019-2750076,2750170-2750225,2750315-2750392,2750489-2750593,2750679-2750778,2751079-2751209	AT1G08640.1 CDS AT1G08640 ID=AT1G08640.1; Parent=AT1G08640; Name=AT1G08640.1; Note=Chloroplast J-like domain 1; curator_summary=Encodes a choloroplast membrane protein CJD1 (Chloroplast J-like Domain 1). Predicted to contain a transit peptide%2C three transmembrane domains and an N-terminal J-like domain. Influences fatty acid composition of chloroplast lipids.; conf_class=2; symbol=CJD1; full_name=Chloroplast J-like domain 1; computational_description=Chloroplast J-like domain 1 (CJD1)%3B LOCATED IN: chloroplast%2C chloroplast envelope%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 14 growth stages%3B Has 82 Blast hits to 80 proteins in 30 species: Archae - 0%3B Bacteria - 24%3B Metazoa - 0%3B Fungi - 0%3B Plants - 50%3B Viruses - 0%3B Other Eukaryotes - 8 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:17919328, PMID:22028775, locus:2025660; locus_type=protein_coding
AT1G44570.1	chr1:002751329	0.0	W/2751329-2751401	AT1G44570.1 pseudogenic_tRNA AT1G44570 ID=AT1G44570.1; Parent=AT1G44570; Name=AT1G44570.1; Dbxref=PMID:23066098; locus_type=pseudogene
AT1G08645.1	chr1:002751813	0.0	C/2751813-2751830,2751942-2752007,2752251-2752595	AT1G08645.1 CDS AT1G08645 ID=AT1G08645.1; Parent=AT1G08645; Name=AT1G08645.1; Note=hypothetical protein; locus_type=protein_coding
AT1G08650.1	chr1:002752206	0.0	W/2752206-2753010,2753183-2753232	AT1G08650.1 CDS AT1G08650 ID=AT1G08650.1; Parent=AT1G08650; Name=AT1G08650.1; Note=phosphoenolpyruvate carboxylase kinase 1; curator_summary=Encodes a phosphoenolpyruvate carboxylase kinase that is expressed at highest levels in leaves. Expression is induced by light.; conf_class=1; symbol=PPCK1; Alias=ATPPCK1, PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 1; full_name=phosphoenolpyruvate carboxylase kinase 1; computational_description=phosphoenolpyruvate carboxylase kinase 1 (PPCK1)%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C kinase activity%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Calcium-dependent protein kinase (InterPro:IPR020642)%2C Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: phosphoenolpyruvate carboxylase kinase 2 (TAIR:AT3G04530.1)%3B Has 121330 Blast hits to 119354 proteins in 3292 species: Archae - 175%3B Bacteria - 14755%3B Metazoa - 43495%3B Fungi - 13131%3B Plants - 28233%3B Viruses - 522%3B Other Eukaryotes - 21019 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:10571893, PMID:12805623, PMID:12805596, PMID:12913170, PMID:16246016, PMID:17376028, PMID:19228119, PMID:19397910, PMID:21477822, locus:2025520; locus_type=protein_coding
AT1G08650.2	chr1:002752206	0.0	W/2752206-2753010,2753125-2753150	AT1G08650.2 CDS AT1G08650 ID=AT1G08650.2; Parent=AT1G08650; Name=AT1G08650.2; Note=phosphoenolpyruvate carboxylase kinase 1; curator_summary=Encodes a phosphoenolpyruvate carboxylase kinase that is expressed at highest levels in leaves. Expression is induced by light.; conf_class=3; symbol=PPCK1; Alias=ATPPCK1, PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 1; full_name=phosphoenolpyruvate carboxylase kinase 1; computational_description=phosphoenolpyruvate carboxylase kinase 1 (PPCK1)%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C kinase activity%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Calcium-dependent protein kinase (InterPro:IPR020642)%2C Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: phosphoenolpyruvate carboxylase kinase 2 (TAIR:AT3G04530.1)%3B Has 121330 Blast hits to 119354 proteins in 3292 species: Archae - 175%3B Bacteria - 14755%3B Metazoa - 43495%3B Fungi - 13131%3B Plants - 28233%3B Viruses - 522%3B Other Eukaryotes - 21019 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10571893, PMID:12805623, PMID:12805596, PMID:12913170, PMID:16246016, PMID:17376028, PMID:19228119, PMID:19397910, PMID:21477822, locus:2025520; locus_type=protein_coding
AT1G08660.1	chr1:002757116	0.0	C/2757116-2757514,2757602-2757683,2757805-2757953,2758134-2758192,2758319-2758409,2758531-2758732,2758817-2758908,2758988-2759065,2759159-2759245,2759406-2759485,2759572-2759677	AT1G08660.1 CDS AT1G08660 ID=AT1G08660.1; Parent=AT1G08660; Name=AT1G08660.1; Note=MALE GAMETOPHYTE DEFECTIVE 2; curator_summary=Encodes a sialyltransferase-like protein that is localized to the Golgi apparatus and is involved in pollen tube growth and pollen germination.; conf_class=2; symbol=MGP2; Alias=SIA1, sialyltransferase-like 1; full_name=MALE GAMETOPHYTE DEFECTIVE 2; computational_description=MALE GAMETOPHYTE DEFECTIVE 2 (MGP2)%3B FUNCTIONS IN: transferase activity%2C transferring glycosyl groups%2C sialyltransferase activity%3B INVOLVED IN: protein amino acid glycosylation%3B LOCATED IN: Golgi apparatus%2C membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Glycosyl transferase%2C family 29 (InterPro:IPR001675)%3B BEST Arabidopsis thaliana protein match is: Glycosyltransferase family 29 (sialyltransferase) family protein (TAIR:AT3G48820.1)%3B Has 1529 Blast hits to 1526 proteins in 78 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1325%3B Fungi - 0%3B Plants - 155%3B Viruses - 13%3B Other Eukaryotes - 36 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15295017, PMID:16618929, PMID:18793471, PMID:20738727, PMID:24825296, locus:2025540; locus_type=protein_coding
AT1G08660.2	chr1:002757584	0.0	C/2757584-2757683,2757805-2757953,2758134-2758192,2758319-2758409,2758531-2758732,2758817-2758908,2758988-2759065,2759159-2759245,2759406-2759485,2759572-2759677	AT1G08660.2 CDS AT1G08660 ID=AT1G08660.2; Parent=AT1G08660; Name=AT1G08660.2; Note=MALE GAMETOPHYTE DEFECTIVE 2; curator_summary=Encodes a sialyltransferase-like protein that is localized to the Golgi apparatus and is involved in pollen tube growth and pollen germination.; conf_class=2; symbol=MGP2; Alias=SIA1, sialyltransferase-like 1; full_name=MALE GAMETOPHYTE DEFECTIVE 2; computational_description=MALE GAMETOPHYTE DEFECTIVE 2 (MGP2)%3B FUNCTIONS IN: transferase activity%2C transferring glycosyl groups%2C sialyltransferase activity%3B INVOLVED IN: protein amino acid glycosylation%3B LOCATED IN: Golgi apparatus%2C membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Glycosyl transferase%2C family 29 (InterPro:IPR001675)%3B BEST Arabidopsis thaliana protein match is: Glycosyltransferase family 29 (sialyltransferase) family protein (TAIR:AT3G48820.1)%3B Has 1529 Blast hits to 1526 proteins in 78 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1325%3B Fungi - 0%3B Plants - 155%3B Viruses - 13%3B Other Eukaryotes - 36 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15295017, PMID:16618929, PMID:18793471, PMID:20738727, PMID:24825296, locus:2025540; locus_type=protein_coding
AT1G08660.3	chr1:002757584	0.0	C/2757584-2757683,2757805-2757953,2758134-2758192,2758319-2758409,2758531-2758732,2758817-2758908,2758988-2759065,2759159-2759278	AT1G08660.3 CDS AT1G08660 ID=AT1G08660.3; Parent=AT1G08660; Name=AT1G08660.3; Note=MALE GAMETOPHYTE DEFECTIVE 2; symbol=MGP2; Alias=SIA1, sialyltransferase-like 1; full_name=MALE GAMETOPHYTE DEFECTIVE 2; curator_summary=Encodes a sialyltransferase-like protein that is localized to the Golgi apparatus and is involved in pollen tube growth and pollen germination.; computational_description=MALE GAMETOPHYTE DEFECTIVE 2 (MGP2)%3B FUNCTIONS IN: transferase activity%2C transferring glycosyl groups%2C sialyltransferase activity%3B INVOLVED IN: protein amino acid glycosylation%3B LOCATED IN: Golgi apparatus%2C membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Glycosyl transferase%2C family 29 (InterPro:IPR001675)%3B BEST Arabidopsis thaliana protein match is: Glycosyltransferase family 29 (sialyltransferase) family protein (TAIR:AT3G48820.1)%3B Has 1529 Blast hits to 1526 proteins in 78 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1325%3B Fungi - 0%3B Plants - 155%3B Viruses - 13%3B Other Eukaryotes - 36 (source: NCBI BLink).; Dbxref=PMID:15295017, PMID:16618929, PMID:18793471, PMID:20738727, PMID:24825296, locus:2025540; locus_type=protein_coding
AT1G08670.1	chr1:002760419	0.0	C/2760419-2760872,2761127-2761249,2761433-2761551	AT1G08670.1 CDS AT1G08670 ID=AT1G08670.1; Parent=AT1G08670; Name=AT1G08670.1; Note=ENTH/VHS family protein; conf_class=1; computational_description=ENTH/VHS family protein%3B CONTAINS InterPro DOMAIN/s: Epsin%2C N-terminal (InterPro:IPR001026)%2C Epsin-like%2C N-terminal (InterPro:IPR013809)%2C ENTH/VHS (InterPro:IPR008942)%3B BEST Arabidopsis thaliana protein match is: ENTH/VHS family protein (TAIR:AT3G46540.1)%3B Has 902 Blast hits to 902 proteins in 167 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 537%3B Fungi - 217%3B Plants - 109%3B Viruses - 0%3B Other Eukaryotes - 39 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:2025555; locus_type=protein_coding
AT1G08670.2	chr1:002760419	0.0	C/2760419-2760872,2761127-2761197	AT1G08670.2 CDS AT1G08670 ID=AT1G08670.2; Parent=AT1G08670; Name=AT1G08670.2; Note=ENTH/VHS family protein; computational_description=ENTH/VHS family protein%3B CONTAINS InterPro DOMAIN/s: Epsin%2C N-terminal (InterPro:IPR001026)%2C Epsin-like%2C N-terminal (InterPro:IPR013809)%2C ENTH/VHS (InterPro:IPR008942)%3B BEST Arabidopsis thaliana protein match is: ENTH/VHS family protein (TAIR:AT3G46540.1)%3B Has 902 Blast hits to 902 proteins in 167 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 537%3B Fungi - 217%3B Plants - 109%3B Viruses - 0%3B Other Eukaryotes - 39 (source: NCBI BLink).; Dbxref=locus:2025555; locus_type=protein_coding
AT1G08680.1	chr1:002762820	0.0	W/2762820-2762918,2763298-2763359,2764236-2764323,2764410-2764471,2764593-2764689,2765056-2765451,2765576-2766175,2766506-2766643,2766726-2766821,2766945-2767031,2767612-2767747,2768060-2768093,2768333-2768387	AT1G08680.1 CDS AT1G08680 ID=AT1G08680.1; Parent=AT1G08680; Name=AT1G08680.1; Note=ARF GAP-like zinc finger-containing protein ZIGA4; curator_summary=A member of ARF GAP domain (AGD)%2C A thaliana has 15 members%2C grouped into four classes. AGD14 belongs to the class 4%2C together with AGD15.; conf_class=2; symbol=ZIGA4; Alias=AGD14, ARF-GAP domain 14; full_name=ARF GAP-like zinc finger-containing protein ZIGA4; computational_description=ARF GAP-like zinc finger-containing protein ZIGA4 (ZIGA4)%3B FUNCTIONS IN: ARF GTPase activator activity%2C DNA binding%2C zinc ion binding%3B INVOLVED IN: regulation of ARF GTPase activity%3B LOCATED IN: nucleus%2C plasma membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164)%3B BEST Arabidopsis thaliana protein match is: NSP (nuclear shuttle protein)-interacting GTPase (TAIR:AT4G13350.2)%3B Has 3488 Blast hits to 2959 proteins in 240 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 1486%3B Fungi - 545%3B Plants - 477%3B Viruses - 2%3B Other Eukaryotes - 974 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12644670, PMID:18489709, PMID:20736450, PMID:21477822, locus:2025575; locus_type=protein_coding
AT1G08680.2	chr1:002762820	0.0	W/2762820-2762918,2763298-2763359,2764236-2764323,2764410-2764471,2764593-2764689,2765056-2765451,2765576-2766175,2766509-2766643,2766726-2766821,2766945-2767031,2767612-2767747,2768060-2768093,2768333-2768387	AT1G08680.2 CDS AT1G08680 ID=AT1G08680.2; Parent=AT1G08680; Name=AT1G08680.2; Note=ARF GAP-like zinc finger-containing protein ZIGA4; curator_summary=A member of ARF GAP domain (AGD)%2C A thaliana has 15 members%2C grouped into four classes. AGD14 belongs to the class 4%2C together with AGD15.; conf_class=2; symbol=ZIGA4; Alias=AGD14, ARF-GAP domain 14; full_name=ARF GAP-like zinc finger-containing protein ZIGA4; computational_description=ARF GAP-like zinc finger-containing protein ZIGA4 (ZIGA4)%3B FUNCTIONS IN: ARF GTPase activator activity%2C DNA binding%2C zinc ion binding%3B INVOLVED IN: regulation of ARF GTPase activity%3B LOCATED IN: nucleus%2C plasma membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164)%3B BEST Arabidopsis thaliana protein match is: NSP (nuclear shuttle protein)-interacting GTPase (TAIR:AT4G13350.2)%3B Has 3488 Blast hits to 2959 proteins in 240 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 1486%3B Fungi - 545%3B Plants - 477%3B Viruses - 2%3B Other Eukaryotes - 974 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12644670, PMID:18489709, PMID:20736450, PMID:21477822, locus:2025575; locus_type=protein_coding
AT1G08680.3	chr1:002762820	0.0	W/2762820-2762918,2763298-2763359,2764236-2764323,2764410-2764471,2764593-2764689,2765056-2765200,2765327-2765451,2765576-2766175,2766506-2766643,2766726-2766821,2766945-2767031,2767612-2767747,2768060-2768093,2768333-2768387	AT1G08680.3 CDS AT1G08680 ID=AT1G08680.3; Parent=AT1G08680; Name=AT1G08680.3; Note=ARF GAP-like zinc finger-containing protein ZIGA4; curator_summary=A member of ARF GAP domain (AGD)%2C A thaliana has 15 members%2C grouped into four classes. AGD14 belongs to the class 4%2C together with AGD15.; conf_class=2; symbol=ZIGA4; Alias=AGD14, ARF-GAP domain 14; full_name=ARF GAP-like zinc finger-containing protein ZIGA4; computational_description=ARF GAP-like zinc finger-containing protein ZIGA4 (ZIGA4)%3B FUNCTIONS IN: ARF GTPase activator activity%2C DNA binding%2C zinc ion binding%3B INVOLVED IN: regulation of ARF GTPase activity%3B LOCATED IN: nucleus%2C plasma membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164)%3B BEST Arabidopsis thaliana protein match is: NSP (nuclear shuttle protein)-interacting GTPase (TAIR:AT4G13350.2)%3B Has 3488 Blast hits to 2959 proteins in 240 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 1486%3B Fungi - 545%3B Plants - 477%3B Viruses - 2%3B Other Eukaryotes - 974 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12644670, PMID:18489709, PMID:20736450, PMID:21477822, locus:2025575; locus_type=protein_coding
AT1G08680.4	chr1:002762820	0.0	W/2762820-2762918,2763298-2763359,2764236-2764323,2764410-2764471,2764593-2764689,2765056-2765451,2765576-2766175,2766506-2766643,2766720-2766821,2766945-2767031,2767612-2767747,2768060-2768093,2768333-2768387	AT1G08680.4 CDS AT1G08680 ID=AT1G08680.4; Parent=AT1G08680; Name=AT1G08680.4; Note=ARF GAP-like zinc finger-containing protein ZIGA4; curator_summary=A member of ARF GAP domain (AGD)%2C A thaliana has 15 members%2C grouped into four classes. AGD14 belongs to the class 4%2C together with AGD15.; conf_class=4; symbol=ZIGA4; Alias=AGD14, ARF-GAP domain 14; full_name=ARF GAP-like zinc finger-containing protein ZIGA4; computational_description=ARF GAP-like zinc finger-containing protein ZIGA4 (ZIGA4)%3B FUNCTIONS IN: ARF GTPase activator activity%2C DNA binding%2C zinc ion binding%3B INVOLVED IN: regulation of ARF GTPase activity%3B LOCATED IN: nucleus%2C plasma membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164)%3B BEST Arabidopsis thaliana protein match is: NSP (nuclear shuttle protein)-interacting GTPase (TAIR:AT4G13350.2)%3B Has 3488 Blast hits to 2959 proteins in 240 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 1486%3B Fungi - 545%3B Plants - 477%3B Viruses - 2%3B Other Eukaryotes - 974 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:12644670, PMID:18489709, PMID:20736450, PMID:21477822, locus:2025575; locus_type=protein_coding
AT1G08680.5	chr1:002762820	0.0	W/2762820-2762918,2763298-2763359,2764236-2764323,2764410-2764471,2764593-2764689,2765056-2765451,2765576-2766175,2766506-2766643,2766726-2766821,2766945-2767031,2767404-2767421	AT1G08680.5 CDS AT1G08680 ID=AT1G08680.5; Parent=AT1G08680; Name=AT1G08680.5; Note=ARF GAP-like zinc finger-containing protein ZIGA4; symbol=ZIGA4; Alias=AGD14, ARF-GAP domain 14; full_name=ARF GAP-like zinc finger-containing protein ZIGA4; curator_summary=A member of ARF GAP domain (AGD)%2C A thaliana has 15 members%2C grouped into four classes. AGD14 belongs to the class 4%2C together with AGD15.; computational_description=ARF GAP-like zinc finger-containing protein ZIGA4 (ZIGA4)%3B FUNCTIONS IN: ARF GTPase activator activity%2C DNA binding%2C zinc ion binding%3B INVOLVED IN: regulation of ARF GTPase activity%3B LOCATED IN: nucleus%2C plasma membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164)%3B BEST Arabidopsis thaliana protein match is: NSP (nuclear shuttle protein)-interacting GTPase (TAIR:AT4G13350.2)%3B Has 3488 Blast hits to 2959 proteins in 240 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 1486%3B Fungi - 545%3B Plants - 477%3B Viruses - 2%3B Other Eukaryotes - 974 (source: NCBI BLink).; Dbxref=PMID:12644670, PMID:18489709, PMID:20736450, PMID:21477822, locus:2025575; locus_type=protein_coding
AT1G08695.1	chr1:002769056	0.0	C/2769056-2769252,2769414-2769483	AT1G08695.1 CDS AT1G08695 ID=AT1G08695.1; Parent=AT1G08695; Name=AT1G08695.1; Note=SCR-like 3; curator_summary=Encodes a member of a family of small%2C secreted%2C cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).; conf_class=4; symbol=SCRL3; full_name=SCR-like 3; computational_description=SCR-like 3 (SCRL3)%3B INVOLVED IN: signal transduction%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: Plant self-incompatibility response (InterPro:IPR010682)%3B BEST Arabidopsis thaliana protein match is: SCR-like 1 (TAIR:AT4G10457.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:11437247, locus:1009023104; locus_type=protein_coding
AT1G08700.1	chr1:002769885	0.0	C/2769885-2770924,2771027-2771348	AT1G08700.1 CDS AT1G08700 ID=AT1G08700.1; Parent=AT1G08700; Name=AT1G08700.1; Note=Presenilin-1; curator_summary=Encodes a protein similar to animal presenilin whose expression is increased in response to potassium (K+) deprivation. Located in intracellular membrane compartments.; conf_class=2; symbol=PS1; full_name=Presenilin-1; computational_description=Presenilin-1 (PS1)%3B INVOLVED IN: intracellular signaling pathway%3B LOCATED IN: endomembrane system%2C integral to membrane%2C membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase A22%2C presenilin signal peptide (InterPro:IPR006639)%2C Peptidase A22A%2C presenilin (InterPro:IPR001108)%3B BEST Arabidopsis thaliana protein match is: Presenilin-2 (TAIR:AT2G29900.1)%3B Has 596 Blast hits to 445 proteins in 109 species: Archae - 4%3B Bacteria - 0%3B Metazoa - 417%3B Fungi - 0%3B Plants - 68%3B Viruses - 0%3B Other Eukaryotes - 107 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15449379, PMID:18650403, PMID:20156199, PMID:21815983, PMID:24723404, locus:2025640; locus_type=protein_coding
AT1G08710.1	chr1:002771720	0.0	W/2771720-2771955,2772044-2772217,2772444-2772606,2772697-2772895,2773198-2773250	AT1G08710.1 CDS AT1G08710 ID=AT1G08710.1; Parent=AT1G08710; Name=AT1G08710.1; Note=F-box family protein; conf_class=2; computational_description=F-box family protein%3B Has 132 Blast hits to 132 proteins in 42 species: Archae - 3%3B Bacteria - 4%3B Metazoa - 68%3B Fungi - 2%3B Plants - 38%3B Viruses - 0%3B Other Eukaryotes - 17 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12795696, PMID:18989364, locus:2025665; locus_type=protein_coding
AT1G08710.2	chr1:002771720	0.0	W/2771720-2771955,2772044-2772217,2772444-2772606,2772697-2773011	AT1G08710.2 CDS AT1G08710 ID=AT1G08710.2; Parent=AT1G08710; Name=AT1G08710.2; Note=F-box family protein; conf_class=2; computational_description=F-box family protein%3B Has 132 Blast hits to 132 proteins in 42 species: Archae - 3%3B Bacteria - 4%3B Metazoa - 68%3B Fungi - 2%3B Plants - 38%3B Viruses - 0%3B Other Eukaryotes - 17 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12795696, PMID:18989364, locus:2025665; locus_type=protein_coding
AT1G08720.1	chr1:002774089	0.0	W/2774089-2774499,2774851-2775273,2775519-2775622,2775708-2776801,2777040-2777080,2777597-2777665,2777806-2777906,2777998-2778076,2778168-2778266,2778362-2778430,2778555-2778604,2778737-2778913,2778993-2779077	AT1G08720.1 CDS AT1G08720 ID=AT1G08720.1; Parent=AT1G08720; Name=AT1G08720.1; Note=Protein kinase superfamily protein; curator_summary=enhanced disease resistance 1 (EDR1) confers resistance to powdery mildew disease caused by the fungus Erysiphe cichoracearum; conf_class=1; symbol=EDR1; Alias=ATEDR1; full_name=ENHANCED DISEASE RESISTANCE 1; computational_description=ENHANCED DISEASE RESISTANCE 1 (EDR1)%3B FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity%2C MAP kinase kinase kinase activity%2C kinase activity%3B INVOLVED IN: in 7 processes%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G11850.1)%3B Has 120792 Blast hits to 119043 proteins in 4682 species: Archae - 98%3B Bacteria - 12672%3B Metazoa - 46002%3B Fungi - 10646%3B Plants - 32815%3B Viruses - 475%3B Other Eukaryotes - 18084 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:9634583, PMID:11114160, PMID:12492839, PMID:15773856, PMID:15894742, PMID:16222089, PMID:16429265, PMID:16565218, PMID:18815384, PMID:19318610, PMID:20367466, PMID:20807375, PMID:21343429, PMID:21605210, PMID:21530897, PMID:21726375, PMID:22035198, PMID:22057322, PMID:22499202, PMID:22577987, PMID:23462936, PMID:23838955, PMID:24830651, PMID:25353364, PMID:25398498, locus:2025515; locus_type=protein_coding
AT1G08720.2	chr1:002774089	0.0	W/2774089-2774499,2774851-2775273,2775519-2775622,2775708-2776801,2777040-2777080,2777597-2777665,2777806-2777906,2777998-2778076,2778168-2778266,2778362-2778430,2778555-2778604,2778737-2778917	AT1G08720.2 CDS AT1G08720 ID=AT1G08720.2; Parent=AT1G08720; Name=AT1G08720.2; Note=Protein kinase superfamily protein; symbol=EDR1; Alias=ATEDR1; full_name=ENHANCED DISEASE RESISTANCE 1; curator_summary=enhanced disease resistance 1 (EDR1) confers resistance to powdery mildew disease caused by the fungus Erysiphe cichoracearum; computational_description=ENHANCED DISEASE RESISTANCE 1 (EDR1)%3B FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity%2C MAP kinase kinase kinase activity%2C kinase activity%3B INVOLVED IN: in 7 processes%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G11850.1)%3B Has 120792 Blast hits to 119043 proteins in 4682 species: Archae - 98%3B Bacteria - 12672%3B Metazoa - 46002%3B Fungi - 10646%3B Plants - 32815%3B Viruses - 475%3B Other Eukaryotes - 18084 (source: NCBI BLink).; Dbxref=PMID:9634583, PMID:11114160, PMID:12492839, PMID:15773856, PMID:15894742, PMID:16222089, PMID:16429265, PMID:16565218, PMID:18815384, PMID:19318610, PMID:20367466, PMID:20807375, PMID:21343429, PMID:21605210, PMID:21530897, PMID:21726375, PMID:22035198, PMID:22057322, PMID:22499202, PMID:22577987, PMID:23462936, PMID:23838955, PMID:24830651, PMID:25353364, PMID:25398498, locus:2025515; locus_type=protein_coding
AT1G08730.1	chr1:002779963	0.0	W/2779963-2780014,2780158-2780261,2780355-2780498,2780581-2780726,2780822-2780978,2781072-2781130,2781214-2781373,2781446-2781595,2781697-2781833,2781908-2782054,2782139-2782240,2782317-2782374,2782446-2782547,2782650-2782687,2782772-2782898,2782973-2783143,2783298-2783429,2783565-2783674,2783767-2783827,2783948-2784125,2784240-2784445,2784534-2784653,2784950-2785048,2785128-2785349,2785464-2785603,2785709-2785820,2785917-2785964,2786057-2786311,2786400-2786555,2786659-2786865,2786953-2787096,2787182-2787252,2787356-2787455,2787526-2787582,2787662-2787718,2787867-2787947,2788045-2788127,2788202-2788325	AT1G08730.1 CDS AT1G08730 ID=AT1G08730.1; Parent=AT1G08730; Name=AT1G08730.1; Note=Myosin family protein with Dil domain-containing protein; curator_summary=Class XI myosin gene; conf_class=6; symbol=XIC; computational_description=XIC%3B CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444)%2C Dilute (InterPro:IPR002710)%2C Myosin%2C N-terminal%2C SH3-like (InterPro:IPR004009)%2C Myosin head%2C motor domain (InterPro:IPR001609)%2C IQ calmodulin-binding region (InterPro:IPR000048)%3B BEST Arabidopsis thaliana protein match is: Myosin family protein with Dil domain (TAIR:AT1G54560.1)%3B Has 57567 Blast hits to 36765 proteins in 2556 species: Archae - 784%3B Bacteria - 7621%3B Metazoa - 29049%3B Fungi - 4176%3B Plants - 2435%3B Viruses - 163%3B Other Eukaryotes - 13339 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:7811972, PMID:11516337, PMID:15792961, PMID:17411438, PMID:18178669, PMID:18598361, PMID:18775970, PMID:20736450, PMID:21914656, locus:2025535; locus_type=protein_coding
AT1G08730.2	chr1:002779963	0.0	W/2779963-2779965,2780133-2780261,2780355-2780498,2780581-2780726,2780822-2780978,2781072-2781130,2781214-2781373,2781446-2781595,2781697-2781833,2781908-2782054,2782139-2782240,2782317-2782374,2782446-2782547,2782650-2782687,2782772-2782898,2782973-2783143,2783298-2783429,2783565-2783674,2783767-2783827,2783948-2784125,2784240-2784445,2784534-2784653,2784950-2785048,2785128-2785349,2785464-2785603,2785709-2785820,2785917-2785964,2786057-2786311,2786400-2786555,2786659-2786865,2786953-2787096,2787182-2787252,2787356-2787455,2787526-2787582,2787662-2787718,2787867-2787947,2788045-2788127,2788202-2788325	AT1G08730.2 CDS AT1G08730 ID=AT1G08730.2; Parent=AT1G08730; Name=AT1G08730.2; Note=Myosin family protein with Dil domain-containing protein; symbol=XIC; curator_summary=Class XI myosin gene; computational_description=XIC%3B CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444)%2C Dilute (InterPro:IPR002710)%2C Myosin%2C N-terminal%2C SH3-like (InterPro:IPR004009)%2C Myosin head%2C motor domain (InterPro:IPR001609)%2C IQ calmodulin-binding region (InterPro:IPR000048)%3B BEST Arabidopsis thaliana protein match is: Myosin family protein with Dil domain (TAIR:AT1G54560.1)%3B Has 57567 Blast hits to 36765 proteins in 2556 species: Archae - 784%3B Bacteria - 7621%3B Metazoa - 29049%3B Fungi - 4176%3B Plants - 2435%3B Viruses - 163%3B Other Eukaryotes - 13339 (source: NCBI BLink).; Dbxref=PMID:7811972, PMID:11516337, PMID:15792961, PMID:17411438, PMID:18178669, PMID:18598361, PMID:18775970, PMID:20736450, PMID:21914656, locus:2025535; locus_type=protein_coding
AT1TE09080	chr1:002788430	0.0	W/2788430-2791803,2791804-2800701	AT1TE09080 transposable_element AT1TE09080 ID=AT1TE09080; Name=AT1TE09080; Alias=VANDAL14
AT1G08735.1	chr1:002790290	0.0	W/2790290-2793641	AT1G08735.1 CDS AT1G08735 ID=AT1G08735.1; Parent=AT1G08735; Name=AT1G08735.1; index=1; computational_description=Mutator-like transposase family%2C has a 3.3e-87 P-value blast match to Q9SLM0 /314-478 Pfam PF03108 MuDR family transposase (MuDr-element domain); Dbxref=PMID:16429265, locus:2825154; Note=transposable_element_gene; locus_type=transposable_element_gene
AT1G08740.1	chr1:002795643	0.0	C/2795643-2800081	AT1G08740.1 CDS AT1G08740 ID=AT1G08740.1; Parent=AT1G08740; Name=AT1G08740.1; index=1; computational_description=similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G29240.1)%3B similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G26530.1)%3B similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G44890.1)%3B similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1)%3B contains InterPro domain Peptidase C48%2C SUMO/Sentrin/Ubl1%3B (InterPro:IPR003653); Dbxref=PMID:16798886, locus:2025570; Note=transposable_element_gene; locus_type=transposable_element_gene
AT1G08750.1	chr1:002801283	0.0	W/2801283-2801395,2801830-2801871,2801982-2802126,2802388-2802617,2802824-2802881,2803017-2803094,2803241-2803329,2803537-2803618,2803876-2804064,2804252-2804392	AT1G08750.1 CDS AT1G08750 ID=AT1G08750.1; Parent=AT1G08750; Name=AT1G08750.1; Note=Peptidase C13 family; conf_class=2; computational_description=Peptidase C13 family%3B FUNCTIONS IN: GPI-anchor transamidase activity%2C cysteine-type endopeptidase activity%3B INVOLVED IN: proteolysis%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase C13%2C legumain (InterPro:IPR001096)%3B BEST Arabidopsis thaliana protein match is: alpha-vacuolar processing enzyme (TAIR:AT2G25940.1)%3B Has 779 Blast hits to 778 proteins in 243 species: Archae - 4%3B Bacteria - 12%3B Metazoa - 279%3B Fungi - 120%3B Plants - 231%3B Viruses - 0%3B Other Eukaryotes - 133 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2025590; locus_type=protein_coding
AT1G08750.2	chr1:002801283	0.0	W/2801283-2801395,2801830-2801871,2801982-2802126,2802388-2802617,2802824-2802881,2803017-2803094,2803241-2803329,2803537-2803618,2803876-2804064,2804252-2804392	AT1G08750.2 CDS AT1G08750 ID=AT1G08750.2; Parent=AT1G08750; Name=AT1G08750.2; Note=Peptidase C13 family; conf_class=2; computational_description=Peptidase C13 family%3B FUNCTIONS IN: GPI-anchor transamidase activity%2C cysteine-type endopeptidase activity%3B INVOLVED IN: proteolysis%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase C13%2C legumain (InterPro:IPR001096)%3B BEST Arabidopsis thaliana protein match is: alpha-vacuolar processing enzyme (TAIR:AT2G25940.1)%3B Has 779 Blast hits to 778 proteins in 243 species: Archae - 4%3B Bacteria - 12%3B Metazoa - 279%3B Fungi - 120%3B Plants - 231%3B Viruses - 0%3B Other Eukaryotes - 133 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2025590; locus_type=protein_coding
AT1G08750.3	chr1:002801283	0.0	W/2801283-2801395,2801830-2801871,2801982-2802126,2802388-2802617,2802824-2802881,2803017-2803094,2803241-2803329,2803537-2803618,2803876-2804064,2804252-2804392	AT1G08750.3 CDS AT1G08750 ID=AT1G08750.3; Parent=AT1G08750; Name=AT1G08750.3; Note=Peptidase C13 family; conf_class=2; computational_description=Peptidase C13 family%3B FUNCTIONS IN: GPI-anchor transamidase activity%2C cysteine-type endopeptidase activity%3B INVOLVED IN: proteolysis%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase C13%2C legumain (InterPro:IPR001096)%3B BEST Arabidopsis thaliana protein match is: alpha-vacuolar processing enzyme (TAIR:AT2G25940.1)%3B Has 779 Blast hits to 778 proteins in 243 species: Archae - 4%3B Bacteria - 12%3B Metazoa - 279%3B Fungi - 120%3B Plants - 231%3B Viruses - 0%3B Other Eukaryotes - 133 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2025590; locus_type=protein_coding
AT1G08760.1	chr1:002805478	0.0	W/2805478-2806464,2806758-2807057,2807311-2807402,2807542-2808409	AT1G08760.1 CDS AT1G08760 ID=AT1G08760.1; Parent=AT1G08760; Name=AT1G08760.1; Note=GPI-anchored adhesin-like protein%2C putative (DUF936); conf_class=1; computational_description=Plant protein of unknown function (DUF936)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: cultured cell%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF936%2C plant (InterPro:IPR010341)%3B BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF936) (TAIR:AT3G14170.1)%3B Has 718 Blast hits to 418 proteins in 99 species: Archae - 0%3B Bacteria - 149%3B Metazoa - 50%3B Fungi - 25%3B Plants - 280%3B Viruses - 0%3B Other Eukaryotes - 214 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:2025605; locus_type=protein_coding
AT1G08770.1	chr1:002808933	0.0	W/2808933-2809562	AT1G08770.1 CDS AT1G08770 ID=AT1G08770.1; Parent=AT1G08770; Name=AT1G08770.1; Note=prenylated RAB acceptor 1.E; conf_class=1; symbol=PRA1.E; full_name=prenylated RAB acceptor 1.E; computational_description=prenylated RAB acceptor 1.E (PRA1.E)%3B CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895)%3B BEST Arabidopsis thaliana protein match is: PRA1 (Prenylated rab acceptor) family protein (TAIR:AT1G55190.1)%3B Has 522 Blast hits to 522 proteins in 132 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 107%3B Fungi - 87%3B Plants - 296%3B Viruses - 0%3B Other Eukaryotes - 32 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14576160, PMID:18583532, PMID:18775970, locus:2025615; locus_type=protein_coding
AT1G08780.1	chr1:002809925	0.0	C/2809925-2810185,2810910-2811026,2811115-2811126	AT1G08780.1 CDS AT1G08780 ID=AT1G08780.1; Parent=AT1G08780; Name=AT1G08780.1; Note=ABI3-interacting protein 3; conf_class=2; symbol=AIP3; Alias=PFD4, PREFOLDIN 4; full_name=ABI3-interacting protein 3; computational_description=ABI3-interacting protein 3 (AIP3)%3B FUNCTIONS IN: unfolded protein binding%3B INVOLVED IN: protein folding%3B LOCATED IN: prefoldin complex%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Prefoldin beta-like (InterPro:IPR002777)%2C Prefoldin%2C subunit 4 (InterPro:IPR016661)%3B Has 376 Blast hits to 375 proteins in 196 species: Archae - 2%3B Bacteria - 0%3B Metazoa - 120%3B Fungi - 130%3B Plants - 57%3B Viruses - 0%3B Other Eukaryotes - 67 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10743655, PMID:19004800, PMID:19825635, locus:2025655; locus_type=protein_coding
AT1G08790.1	chr1:002811989	0.0	W/2811989-2812478,2812564-2812646	AT1G08790.1 CDS AT1G08790 ID=AT1G08790.1; Parent=AT1G08790; Name=AT1G08790.1; Note=1-phosphatidylinositol-4%2C5-bisphosphate phosphodiesterase epsilon-1%2C putative (DUF1685); conf_class=1; computational_description=Protein of unknown function (DUF1685)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1685) (TAIR:AT5G28690.1)%3B Has 235 Blast hits to 235 proteins in 15 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1%3B Fungi - 0%3B Plants - 234%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:2025530; locus_type=protein_coding
AT1G08800.1	chr1:002813578	0.0	C/2813578-2814758,2814918-2817078	AT1G08800.1 CDS AT1G08800 ID=AT1G08800.1; Parent=AT1G08800; Name=AT1G08800.1; Note=myosin-binding protein (Protein of unknown function%2C DUF593); conf_class=2; Alias=MyoB1, myosin binding protein 1; computational_description=Protein of unknown function%2C DUF593%3B INVOLVED IN: response to salt stress%2C N-terminal protein myristoylation%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF593 (InterPro:IPR007656)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function%2C DUF593 (TAIR:AT2G30690.1)%3B Has 6872 Blast hits to 5400 proteins in 551 species: Archae - 62%3B Bacteria - 762%3B Metazoa - 3039%3B Fungi - 561%3B Plants - 730%3B Viruses - 11%3B Other Eukaryotes - 1707 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11351099, PMID:12912986, PMID:17056621, PMID:18650403, PMID:23995081, locus:2825149; locus_type=protein_coding
AT1G08800.2	chr1:002813578	0.0	C/2813578-2814758,2814918-2817078	AT1G08800.2 CDS AT1G08800 ID=AT1G08800.2; Parent=AT1G08800; Name=AT1G08800.2; Note=myosin-binding protein (Protein of unknown function%2C DUF593); conf_class=3; Alias=MyoB1, myosin binding protein 1; computational_description=Protein of unknown function%2C DUF593%3B INVOLVED IN: response to salt stress%2C N-terminal protein myristoylation%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF593 (InterPro:IPR007656)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function%2C DUF593 (TAIR:AT2G30690.1)%3B Has 6872 Blast hits to 5400 proteins in 551 species: Archae - 62%3B Bacteria - 762%3B Metazoa - 3039%3B Fungi - 561%3B Plants - 730%3B Viruses - 11%3B Other Eukaryotes - 1707 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11351099, PMID:12912986, PMID:17056621, PMID:18650403, PMID:23995081, locus:2825149; locus_type=protein_coding
AT1G08800.3	chr1:002813578	0.0	C/2813578-2814758,2814918-2817078	AT1G08800.3 CDS AT1G08800 ID=AT1G08800.3; Parent=AT1G08800; Name=AT1G08800.3; Note=myosin-binding protein (Protein of unknown function%2C DUF593); Alias=MyoB1, myosin binding protein 1; Dbxref=PMID:11351099, PMID:12912986, PMID:17056621, PMID:18650403, PMID:23995081, locus:2825149; computational_description=Protein of unknown function%2C DUF593%3B INVOLVED IN: response to salt stress%2C N-terminal protein myristoylation%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF593 (InterPro:IPR007656)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function%2C DUF593 (TAIR:AT2G30690.1)%3B Has 6872 Blast hits to 5400 proteins in 551 species: Archae - 62%3B Bacteria - 762%3B Metazoa - 3039%3B Fungi - 561%3B Plants - 730%3B Viruses - 11%3B Other Eukaryotes - 1707 (source: NCBI BLink).; locus_type=protein_coding
AT1G08800.4	chr1:002813578	0.0	C/2813578-2814758,2814918-2817078	AT1G08800.4 CDS AT1G08800 ID=AT1G08800.4; Parent=AT1G08800; Name=AT1G08800.4; Note=myosin-binding protein (Protein of unknown function%2C DUF593); Alias=MyoB1, myosin binding protein 1; Dbxref=PMID:11351099, PMID:12912986, PMID:17056621, PMID:18650403, PMID:23995081, locus:2825149; computational_description=Protein of unknown function%2C DUF593%3B INVOLVED IN: response to salt stress%2C N-terminal protein myristoylation%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF593 (InterPro:IPR007656)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function%2C DUF593 (TAIR:AT2G30690.1)%3B Has 6872 Blast hits to 5400 proteins in 551 species: Archae - 62%3B Bacteria - 762%3B Metazoa - 3039%3B Fungi - 561%3B Plants - 730%3B Viruses - 11%3B Other Eukaryotes - 1707 (source: NCBI BLink).; locus_type=protein_coding
AT1G08810.1	chr1:002819279	0.0	C/2819279-2819858,2819970-2820099,2820197-2820329	AT1G08810.1 CDS AT1G08810 ID=AT1G08810.1; Parent=AT1G08810; Name=AT1G08810.1; Note=myb domain protein 60; curator_summary=putative transcription factor of the R2R3-MYB gene family. Transcript increases under conditions that promote stomatal opening (white and blue light%2C abi1-1 mutation) and decreases under conditions that trigger stomatal closure (ABA%2C desiccation%2C darkness)%2C with the exception of elevated CO2. Expressed exclusively in guard cells of all tissues. It is required for light-induced opening of stomata. Mutant shows reduced stomatal aperture which helps to limit water loss during drought.; conf_class=2; symbol=MYB60; Alias=AtMYB60, myb domain protein 60; full_name=myb domain protein 60; computational_description=myb domain protein 60 (MYB60)%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%2C Homeodomain-related (InterPro:IPR012287)%2C Myb transcription factor (InterPro:IPR015495)%3B BEST Arabidopsis thaliana protein match is: myb domain protein 96 (TAIR:AT5G62470.2)%3B Has 8826 Blast hits to 8217 proteins in 521 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 784%3B Fungi - 468%3B Plants - 5803%3B Viruses - 7%3B Other Eukaryotes - 1764 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9839469, PMID:11118137, PMID:11597504, PMID:14973164, PMID:15078338, PMID:16005291, PMID:16212609, PMID:16299169, PMID:16463103, PMID:18162593, PMID:19965572, PMID:20736450, PMID:22018045, PMID:22088138, PMID:23453954, PMID:23828545, PMID:24377444, locus:2025565; locus_type=protein_coding
AT1G08810.2	chr1:002819279	0.0	C/2819279-2819872	AT1G08810.2 CDS AT1G08810 ID=AT1G08810.2; Parent=AT1G08810; Name=AT1G08810.2; Note=myb domain protein 60; curator_summary=putative transcription factor of the R2R3-MYB gene family. Transcript increases under conditions that promote stomatal opening (white and blue light%2C abi1-1 mutation) and decreases under conditions that trigger stomatal closure (ABA%2C desiccation%2C darkness)%2C with the exception of elevated CO2. Expressed exclusively in guard cells of all tissues. It is required for light-induced opening of stomata. Mutant shows reduced stomatal aperture which helps to limit water loss during drought.; conf_class=4; symbol=MYB60; Alias=AtMYB60, myb domain protein 60; full_name=myb domain protein 60; computational_description=myb domain protein 60 (MYB60)%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%2C Homeodomain-related (InterPro:IPR012287)%2C Myb transcription factor (InterPro:IPR015495)%3B BEST Arabidopsis thaliana protein match is: myb domain protein 96 (TAIR:AT5G62470.2)%3B Has 8826 Blast hits to 8217 proteins in 521 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 784%3B Fungi - 468%3B Plants - 5803%3B Viruses - 7%3B Other Eukaryotes - 1764 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:9839469, PMID:11118137, PMID:11597504, PMID:14973164, PMID:15078338, PMID:16005291, PMID:16212609, PMID:16299169, PMID:16463103, PMID:18162593, PMID:19965572, PMID:20736450, PMID:22018045, PMID:22088138, PMID:23453954, PMID:23828545, PMID:24377444, locus:2025565; locus_type=protein_coding
AT1G08810.3	chr1:002819279	0.0	C/2819279-2819872	AT1G08810.3 CDS AT1G08810 ID=AT1G08810.3; Parent=AT1G08810; Name=AT1G08810.3; Note=myb domain protein 60; symbol=MYB60; Alias=AtMYB60, myb domain protein 60; full_name=myb domain protein 60; Dbxref=PMID:9839469, PMID:11118137, PMID:11597504, PMID:14973164, PMID:15078338, PMID:16005291, PMID:16212609, PMID:16299169, PMID:16463103, PMID:18162593, PMID:19965572, PMID:20736450, PMID:22018045, PMID:22088138, PMID:23453954, PMID:23828545, PMID:24377444, locus:2025565; curator_summary=putative transcription factor of the R2R3-MYB gene family. Transcript increases under conditions that promote stomatal opening (white and blue light%2C abi1-1 mutation) and decreases under conditions that trigger stomatal closure (ABA%2C desiccation%2C darkness)%2C with the exception of elevated CO2. Expressed exclusively in guard cells of all tissues. It is required for light-induced opening of stomata. Mutant shows reduced stomatal aperture which helps to limit water loss during drought.; computational_description=myb domain protein 60 (MYB60)%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%2C Homeodomain-related (InterPro:IPR012287)%2C Myb transcription factor (InterPro:IPR015495)%3B BEST Arabidopsis thaliana protein match is: myb domain protein 96 (TAIR:AT5G62470.2)%3B Has 8826 Blast hits to 8217 proteins in 521 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 784%3B Fungi - 468%3B Plants - 5803%3B Viruses - 7%3B Other Eukaryotes - 1764 (source: NCBI BLink).; locus_type=protein_coding
AT1G08820.1	chr1:002821810	0.0	C/2821810-2821923,2822017-2822094,2822171-2822641,2822833-2823012,2823105-2823220,2823616-2823697,2823827-2823897,2824364-2824412	AT1G08820.1 CDS AT1G08820 ID=AT1G08820.1; Parent=AT1G08820; Name=AT1G08820.1; Note=vamp/synaptobrevin-associated protein 27-2; curator_summary=Encodes VAP33-like protein that interacts with cowpea mosaic virus protein 60K. Is a SNARE-like protein that may be involved in vesicular transport to or from the ER.; conf_class=1; symbol=VAP27-2; full_name=vamp/synaptobrevin-associated protein 27-2; computational_description=vamp/synaptobrevin-associated protein 27-2 (VAP27-2)%3B FUNCTIONS IN: structural molecule activity%3B INVOLVED IN: intracellular transport%3B LOCATED IN: plasma membrane%2C endoplasmic reticulum membrane%3B EXPRESSED IN: cultured cell%3B CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962)%2C Major sperm protein (InterPro:IPR000535)%3B BEST Arabidopsis thaliana protein match is: vesicle associated protein (TAIR:AT3G60600.1)%3B Has 1156 Blast hits to 1101 proteins in 218 species: Archae - 0%3B Bacteria - 19%3B Metazoa - 465%3B Fungi - 159%3B Plants - 427%3B Viruses - 0%3B Other Eukaryotes - 86 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11907339, PMID:20687615, locus:2025585; locus_type=protein_coding
AT1G08820.2	chr1:002821810	0.0	C/2821810-2821923,2822017-2822094,2822171-2822641,2822833-2823012,2823105-2823220,2823616-2823697,2823827-2823897,2824364-2824412	AT1G08820.2 CDS AT1G08820 ID=AT1G08820.2; Parent=AT1G08820; Name=AT1G08820.2; Note=vamp/synaptobrevin-associated protein 27-2; curator_summary=Encodes VAP33-like protein that interacts with cowpea mosaic virus protein 60K. Is a SNARE-like protein that may be involved in vesicular transport to or from the ER.; conf_class=3; symbol=VAP27-2; full_name=vamp/synaptobrevin-associated protein 27-2; computational_description=vamp/synaptobrevin-associated protein 27-2 (VAP27-2)%3B FUNCTIONS IN: structural molecule activity%3B INVOLVED IN: intracellular transport%3B LOCATED IN: plasma membrane%2C endoplasmic reticulum membrane%3B EXPRESSED IN: cultured cell%3B CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962)%2C Major sperm protein (InterPro:IPR000535)%3B BEST Arabidopsis thaliana protein match is: vesicle associated protein (TAIR:AT3G60600.1)%3B Has 1156 Blast hits to 1101 proteins in 218 species: Archae - 0%3B Bacteria - 19%3B Metazoa - 465%3B Fungi - 159%3B Plants - 427%3B Viruses - 0%3B Other Eukaryotes - 86 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11907339, PMID:20687615, locus:2025585; locus_type=protein_coding
AT1G08820.3	chr1:002821810	0.0	C/2821810-2821923,2822017-2822094,2822171-2822641,2822833-2823012,2823105-2823220,2823616-2823697,2823827-2823897,2824364-2824412	AT1G08820.3 CDS AT1G08820 ID=AT1G08820.3; Parent=AT1G08820; Name=AT1G08820.3; Note=vamp/synaptobrevin-associated protein 27-2; symbol=VAP27-2; full_name=vamp/synaptobrevin-associated protein 27-2; Dbxref=PMID:11907339, PMID:20687615, locus:2025585; curator_summary=Encodes VAP33-like protein that interacts with cowpea mosaic virus protein 60K. Is a SNARE-like protein that may be involved in vesicular transport to or from the ER.; computational_description=vamp/synaptobrevin-associated protein 27-2 (VAP27-2)%3B FUNCTIONS IN: structural molecule activity%3B INVOLVED IN: intracellular transport%3B LOCATED IN: plasma membrane%2C endoplasmic reticulum membrane%3B EXPRESSED IN: cultured cell%3B CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962)%2C Major sperm protein (InterPro:IPR000535)%3B BEST Arabidopsis thaliana protein match is: vesicle associated protein (TAIR:AT3G60600.1)%3B Has 1156 Blast hits to 1101 proteins in 218 species: Archae - 0%3B Bacteria - 19%3B Metazoa - 465%3B Fungi - 159%3B Plants - 427%3B Viruses - 0%3B Other Eukaryotes - 86 (source: NCBI BLink).; locus_type=protein_coding
AT1G08820.4	chr1:002821810	0.0	C/2821810-2821923,2822017-2822094,2822171-2822641,2822833-2823012,2823105-2823220,2823616-2823697,2823827-2823897,2824364-2824412	AT1G08820.4 CDS AT1G08820 ID=AT1G08820.4; Parent=AT1G08820; Name=AT1G08820.4; Note=vamp/synaptobrevin-associated protein 27-2; symbol=VAP27-2; full_name=vamp/synaptobrevin-associated protein 27-2; Dbxref=PMID:11907339, PMID:20687615, locus:2025585; curator_summary=Encodes VAP33-like protein that interacts with cowpea mosaic virus protein 60K. Is a SNARE-like protein that may be involved in vesicular transport to or from the ER.; computational_description=vamp/synaptobrevin-associated protein 27-2 (VAP27-2)%3B FUNCTIONS IN: structural molecule activity%3B INVOLVED IN: intracellular transport%3B LOCATED IN: plasma membrane%2C endoplasmic reticulum membrane%3B EXPRESSED IN: cultured cell%3B CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962)%2C Major sperm protein (InterPro:IPR000535)%3B BEST Arabidopsis thaliana protein match is: vesicle associated protein (TAIR:AT3G60600.1)%3B Has 1156 Blast hits to 1101 proteins in 218 species: Archae - 0%3B Bacteria - 19%3B Metazoa - 465%3B Fungi - 159%3B Plants - 427%3B Viruses - 0%3B Other Eukaryotes - 86 (source: NCBI BLink).; locus_type=protein_coding
AT1G08820.5	chr1:002821810	0.0	C/2821810-2821923,2822017-2822094,2822171-2822641,2822833-2823012,2823105-2823220,2823616-2823697,2823827-2823897,2824364-2824412	AT1G08820.5 CDS AT1G08820 ID=AT1G08820.5; Parent=AT1G08820; Name=AT1G08820.5; Note=vamp/synaptobrevin-associated protein 27-2; symbol=VAP27-2; full_name=vamp/synaptobrevin-associated protein 27-2; Dbxref=PMID:11907339, PMID:20687615, locus:2025585; curator_summary=Encodes VAP33-like protein that interacts with cowpea mosaic virus protein 60K. Is a SNARE-like protein that may be involved in vesicular transport to or from the ER.; computational_description=vamp/synaptobrevin-associated protein 27-2 (VAP27-2)%3B FUNCTIONS IN: structural molecule activity%3B INVOLVED IN: intracellular transport%3B LOCATED IN: plasma membrane%2C endoplasmic reticulum membrane%3B EXPRESSED IN: cultured cell%3B CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962)%2C Major sperm protein (InterPro:IPR000535)%3B BEST Arabidopsis thaliana protein match is: vesicle associated protein (TAIR:AT3G60600.1)%3B Has 1156 Blast hits to 1101 proteins in 218 species: Archae - 0%3B Bacteria - 19%3B Metazoa - 465%3B Fungi - 159%3B Plants - 427%3B Viruses - 0%3B Other Eukaryotes - 86 (source: NCBI BLink).; locus_type=protein_coding
AT1G04667.1	chr1:002825588	0.0	W/2825588-2825978	AT1G04667.1 lnc_RNA AT1G04667 ID=AT1G04667.1; Parent=AT1G04667; Name=AT1G04667.1; locus_type=long_noncoding_rna
AT1G08830.1	chr1:002827700	0.0	W/2827700-2827775,2827872-2827973,2828106-2828201,2828380-2828411,2828506-2828581,2828753-2828806,2829031-2829053	AT1G08830.1 CDS AT1G08830 ID=AT1G08830.1; Parent=AT1G08830; Name=AT1G08830.1; Note=copper/zinc superoxide dismutase 1; curator_summary=Encodes a cytosolic copper/zinc superoxide dismutase CSD1 that can detoxify superoxide radicals. Its expression is affected by miR398-directed mRNA cleavage. Regulated by biotic and abiotic stress. Activation of CSD1 in the cytoplasm involves both a CCS-dependent and -independent pathway.; conf_class=2; symbol=CSD1; Alias=AtSOD1, superoxide dismutase 1, SOD1, superoxide dismutase 1; full_name=copper/zinc superoxide dismutase 1; computational_description=copper/zinc superoxide dismutase 1 (CSD1)%3B FUNCTIONS IN: superoxide dismutase activity%3B INVOLVED IN: in 7 processes%3B LOCATED IN: cytosol%2C cytoplasm%3B EXPRESSED IN: 28 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Superoxide dismutase%2C copper/zinc%2C binding site (InterPro:IPR018152)%2C Superoxide dismutase%2C copper/zinc binding (InterPro:IPR001424)%3B BEST Arabidopsis thaliana protein match is: copper/zinc superoxide dismutase 2 (TAIR:AT2G28190.1)%3B Has 4705 Blast hits to 4689 proteins in 1491 species: Archae - 6%3B Bacteria - 2000%3B Metazoa - 1249%3B Fungi - 303%3B Plants - 666%3B Viruses - 142%3B Other Eukaryotes - 339 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9765550, PMID:1731963, PMID:12028573, PMID:12102506, PMID:15772282, PMID:16861386, PMID:18275461, PMID:18392778, PMID:18650403, PMID:18684332, PMID:18775970, PMID:19084994, PMID:19148671, PMID:19533381, PMID:20128885, PMID:21897129, PMID:22186608, PMID:22447966, PMID:23480361, PMID:23677921, PMID:23835944, locus:2025595; locus_type=protein_coding
AT1G08830.2	chr1:002827700	0.0	W/2827700-2827775,2827872-2827973,2828106-2828201,2828380-2828411,2828506-2828581,2828753-2828806,2829031-2829053	AT1G08830.2 CDS AT1G08830 ID=AT1G08830.2; Parent=AT1G08830; Name=AT1G08830.2; Note=copper/zinc superoxide dismutase 1; curator_summary=Encodes a cytosolic copper/zinc superoxide dismutase CSD1 that can detoxify superoxide radicals. Its expression is affected by miR398-directed mRNA cleavage. Regulated by biotic and abiotic stress. Activation of CSD1 in the cytoplasm involves both a CCS-dependent and -independent pathway.; conf_class=2; symbol=CSD1; Alias=AtSOD1, superoxide dismutase 1, SOD1, superoxide dismutase 1; full_name=copper/zinc superoxide dismutase 1; computational_description=copper/zinc superoxide dismutase 1 (CSD1)%3B FUNCTIONS IN: superoxide dismutase activity%3B INVOLVED IN: in 7 processes%3B LOCATED IN: cytosol%2C cytoplasm%3B EXPRESSED IN: 28 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Superoxide dismutase%2C copper/zinc%2C binding site (InterPro:IPR018152)%2C Superoxide dismutase%2C copper/zinc binding (InterPro:IPR001424)%3B BEST Arabidopsis thaliana protein match is: copper/zinc superoxide dismutase 2 (TAIR:AT2G28190.1)%3B Has 4705 Blast hits to 4689 proteins in 1491 species: Archae - 6%3B Bacteria - 2000%3B Metazoa - 1249%3B Fungi - 303%3B Plants - 666%3B Viruses - 142%3B Other Eukaryotes - 339 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9765550, PMID:1731963, PMID:12028573, PMID:12102506, PMID:15772282, PMID:16861386, PMID:18275461, PMID:18392778, PMID:18650403, PMID:18684332, PMID:18775970, PMID:19084994, PMID:19148671, PMID:19533381, PMID:20128885, PMID:21897129, PMID:22186608, PMID:22447966, PMID:23480361, PMID:23677921, PMID:23835944, locus:2025595; locus_type=protein_coding
AT1G08840.1	chr1:002829579	0.0	C/2829579-2829704,2829791-2829910,2830004-2830141,2830205-2830278,2830373-2830412,2830769-2830906,2830996-2831088,2831168-2831245,2831469-2831620,2831695-2831764,2831980-2832147,2832273-2832377,2832495-2832561,2832650-2832771,2832901-2832975,2833145-2833399,2833492-2833626,2834151-2834261,2834339-2834396,2834489-2834544,2834639-2834794,2834927-2834992,2835372-2835454,2835739-2835835,2835948-2836058,2836158-2836290,2836596-2836657,2836723-2836776,2836861-2837067,2837248-2837310,2837386-2837598,2837737-2837865,2838034-2838369	AT1G08840.1 CDS AT1G08840 ID=AT1G08840.1; Parent=AT1G08840; Name=AT1G08840.1; Note=DNA replication helicase; conf_class=6; symbol=emb2411; full_name=embryo defective 2411; computational_description=embryo defective 2411 (emb2411)%3B FUNCTIONS IN: ATP-dependent DNA helicase activity%2C DNA binding%2C ATP binding%3B INVOLVED IN: DNA replication%2C embryo development ending in seed dormancy%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: DNA helicase%2C UvrD/REP type (InterPro:IPR000212)%2C DNA replication factor Dna2 (InterPro:IPR014808)%3B BEST Arabidopsis thaliana protein match is: DNA-binding protein%2C putative (TAIR:AT2G03270.1)%3B Has 6121 Blast hits to 5421 proteins in 1016 species: Archae - 240%3B Bacteria - 1986%3B Metazoa - 1238%3B Fungi - 1140%3B Plants - 545%3B Viruses - 30%3B Other Eukaryotes - 942 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:17556508, PMID:17551672, PMID:18775970, locus:2025610; locus_type=protein_coding
AT1G08840.2	chr1:002829579	0.0	C/2829579-2829704,2829791-2829910,2830004-2830141,2830205-2830278,2830373-2830412,2830769-2830906,2830996-2831088,2831168-2831245,2831469-2831620,2831695-2831764,2831980-2832147,2832273-2832377,2832495-2832561,2832650-2832771,2832901-2832975,2833145-2833399,2833492-2833626,2834017-2834073,2834151-2834261,2834339-2834396,2834489-2834544,2834639-2834794,2834927-2834992,2835372-2835454,2835739-2835835,2835948-2836058,2836158-2836290,2836596-2836657,2836723-2836776,2836861-2837067,2837248-2837310,2837386-2837598,2837737-2837865,2838034-2838369	AT1G08840.2 CDS AT1G08840 ID=AT1G08840.2; Parent=AT1G08840; Name=AT1G08840.2; Note=DNA replication helicase; conf_class=6; symbol=emb2411; full_name=embryo defective 2411; computational_description=embryo defective 2411 (emb2411)%3B FUNCTIONS IN: ATP-dependent DNA helicase activity%2C DNA binding%2C ATP binding%3B INVOLVED IN: DNA replication%2C embryo development ending in seed dormancy%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: DNA helicase%2C UvrD/REP type (InterPro:IPR000212)%2C DNA replication factor Dna2 (InterPro:IPR014808)%3B BEST Arabidopsis thaliana protein match is: DNA-binding protein%2C putative (TAIR:AT2G03270.1)%3B Has 6121 Blast hits to 5421 proteins in 1016 species: Archae - 240%3B Bacteria - 1986%3B Metazoa - 1238%3B Fungi - 1140%3B Plants - 545%3B Viruses - 30%3B Other Eukaryotes - 942 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:17556508, PMID:17551672, PMID:18775970, locus:2025610; locus_type=protein_coding
AT1G08840.3	chr1:002829579	0.0	C/2829579-2829704,2829791-2829910,2830004-2830141,2830205-2830278,2830373-2830412,2830769-2830906,2830996-2831088,2831168-2831245,2831469-2831620,2831695-2831764,2831980-2832147,2832273-2832377,2832495-2832561,2832650-2832771,2832901-2832975,2833145-2833399,2833492-2833626,2834017-2834073,2834151-2834261,2834339-2834396,2834489-2834544,2834639-2834794,2834927-2834992,2835372-2835454,2835739-2835835,2835948-2836058,2836158-2836290,2836596-2836657,2836723-2836776,2836861-2837067,2837248-2837310,2837386-2837607,2837698-2837865,2838034-2838369	AT1G08840.3 CDS AT1G08840 ID=AT1G08840.3; Parent=AT1G08840; Name=AT1G08840.3; Note=DNA replication helicase; symbol=emb2411; full_name=embryo defective 2411; computational_description=embryo defective 2411 (emb2411)%3B FUNCTIONS IN: ATP-dependent DNA helicase activity%2C DNA binding%2C ATP binding%3B INVOLVED IN: DNA replication%2C embryo development ending in seed dormancy%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: DNA helicase%2C UvrD/REP type (InterPro:IPR000212)%2C DNA replication factor Dna2 (InterPro:IPR014808)%3B BEST Arabidopsis thaliana protein match is: DNA-binding protein%2C putative (TAIR:AT2G03270.1)%3B Has 6121 Blast hits to 5421 proteins in 1016 species: Archae - 240%3B Bacteria - 1986%3B Metazoa - 1238%3B Fungi - 1140%3B Plants - 545%3B Viruses - 30%3B Other Eukaryotes - 942 (source: NCBI BLink).; Dbxref=PMID:17556508, PMID:17551672, PMID:18775970, locus:2025610; locus_type=protein_coding
AT1G08840.4	chr1:002829579	0.0	C/2829579-2829704,2829791-2829910,2830004-2830141,2830205-2830278,2830373-2830412,2830769-2830906,2830996-2831088,2831168-2831245,2831469-2831620,2831695-2831764,2831980-2832147,2832273-2832377,2832495-2832561,2832650-2832771,2832901-2832975,2833145-2833399,2833492-2833626,2834017-2834073,2834151-2834261,2834339-2834396,2834489-2834544,2834639-2834794,2834927-2834992,2835372-2835454,2835739-2835835,2835948-2836058,2836158-2836290,2836596-2836657,2836723-2836776,2836861-2837067,2837248-2837310,2837386-2837598,2837698-2837865,2838034-2838369	AT1G08840.4 CDS AT1G08840 ID=AT1G08840.4; Parent=AT1G08840; Name=AT1G08840.4; Note=DNA replication helicase; symbol=emb2411; full_name=embryo defective 2411; computational_description=embryo defective 2411 (emb2411)%3B FUNCTIONS IN: ATP-dependent DNA helicase activity%2C DNA binding%2C ATP binding%3B INVOLVED IN: DNA replication%2C embryo development ending in seed dormancy%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: DNA helicase%2C UvrD/REP type (InterPro:IPR000212)%2C DNA replication factor Dna2 (InterPro:IPR014808)%3B BEST Arabidopsis thaliana protein match is: DNA-binding protein%2C putative (TAIR:AT2G03270.1)%3B Has 6121 Blast hits to 5421 proteins in 1016 species: Archae - 240%3B Bacteria - 1986%3B Metazoa - 1238%3B Fungi - 1140%3B Plants - 545%3B Viruses - 30%3B Other Eukaryotes - 942 (source: NCBI BLink).; Dbxref=PMID:17556508, PMID:17551672, PMID:18775970, locus:2025610; locus_type=protein_coding
AT1G08840.5	chr1:002831463	0.0	C/2831463-2831620,2831695-2831764,2831980-2832147,2832273-2832377,2832495-2832561,2832650-2832771,2832901-2832975,2833145-2833399,2833492-2833626,2834017-2834073,2834151-2834261,2834339-2834396,2834489-2834544,2834639-2834794,2834927-2834992,2835372-2835454,2835739-2835835,2835948-2836058,2836158-2836290,2836596-2836657,2836723-2836776,2836861-2837067,2837248-2837310,2837386-2837598,2837737-2837865,2838034-2838369	AT1G08840.5 CDS AT1G08840 ID=AT1G08840.5; Parent=AT1G08840; Name=AT1G08840.5; Note=DNA replication helicase; symbol=emb2411; full_name=embryo defective 2411; computational_description=embryo defective 2411 (emb2411)%3B FUNCTIONS IN: ATP-dependent DNA helicase activity%2C DNA binding%2C ATP binding%3B INVOLVED IN: DNA replication%2C embryo development ending in seed dormancy%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: DNA helicase%2C UvrD/REP type (InterPro:IPR000212)%2C DNA replication factor Dna2 (InterPro:IPR014808)%3B BEST Arabidopsis thaliana protein match is: DNA-binding protein%2C putative (TAIR:AT2G03270.1)%3B Has 6121 Blast hits to 5421 proteins in 1016 species: Archae - 240%3B Bacteria - 1986%3B Metazoa - 1238%3B Fungi - 1140%3B Plants - 545%3B Viruses - 30%3B Other Eukaryotes - 942 (source: NCBI BLink).; Dbxref=PMID:17556508, PMID:17551672, PMID:18775970, locus:2025610; locus_type=protein_coding
AT1G08845.2	chr1:002838789	0.0	W/2838789-2838815,2839212-2839304,2839840-2839971,2840503-2840955	AT1G08845.2 CDS AT1G08845 ID=AT1G08845.2; Parent=AT1G08845; Name=AT1G08845.2; Note=Ribosomal L18p/L5e family protein; conf_class=3; computational_description=Ribosomal L18p/L5e family protein%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%3B LOCATED IN: ribosome%2C intracellular%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L18/L5 (InterPro:IPR005484)%3B BEST Arabidopsis thaliana protein match is: Ribosomal L18p/L5e family protein (TAIR:AT3G20230.1)%3B Has 242 Blast hits to 242 proteins in 53 species: Archae - 0%3B Bacteria - 82%3B Metazoa - 0%3B Fungi - 0%3B Plants - 143%3B Viruses - 0%3B Other Eukaryotes - 17 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:1005716736; locus_type=protein_coding
AT1G08845.1	chr1:002839855	0.0	W/2839855-2839971,2840503-2840955	AT1G08845.1 CDS AT1G08845 ID=AT1G08845.1; Parent=AT1G08845; Name=AT1G08845.1; Note=Ribosomal L18p/L5e family protein; conf_class=2; computational_description=Ribosomal L18p/L5e family protein%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%3B LOCATED IN: ribosome%2C intracellular%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L18/L5 (InterPro:IPR005484)%3B BEST Arabidopsis thaliana protein match is: Ribosomal L18p/L5e family protein (TAIR:AT3G20230.1)%3B Has 242 Blast hits to 242 proteins in 53 species: Archae - 0%3B Bacteria - 82%3B Metazoa - 0%3B Fungi - 0%3B Plants - 143%3B Viruses - 0%3B Other Eukaryotes - 17 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:1005716736; locus_type=protein_coding
AT1G08845.3	chr1:002839855	0.0	W/2839855-2839971,2840503-2840955	AT1G08845.3 CDS AT1G08845 ID=AT1G08845.3; Parent=AT1G08845; Name=AT1G08845.3; Note=Ribosomal L18p/L5e family protein; Dbxref=locus:1005716736; computational_description=Ribosomal L18p/L5e family protein%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%3B LOCATED IN: ribosome%2C intracellular%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L18/L5 (InterPro:IPR005484)%3B BEST Arabidopsis thaliana protein match is: Ribosomal L18p/L5e family protein (TAIR:AT3G20230.1)%3B Has 242 Blast hits to 242 proteins in 53 species: Archae - 0%3B Bacteria - 82%3B Metazoa - 0%3B Fungi - 0%3B Plants - 143%3B Viruses - 0%3B Other Eukaryotes - 17 (source: NCBI BLink).; locus_type=protein_coding
AT1G08860.1	chr1:002842153	0.0	W/2842153-2842317,2843005-2843052,2843179-2843327,2843412-2843460,2843557-2843613,2843746-2843925,2844020-2844154,2844235-2844296,2844377-2844473,2844556-2844670,2844753-2844829,2845069-2845206,2845360-2845524,2845639-2845752,2845842-2845938,2846032-2846138	AT1G08860.1 CDS AT1G08860 ID=AT1G08860.1; Parent=AT1G08860; Name=AT1G08860.1; Note=Calcium-dependent phospholipid-binding Copine family protein; curator_summary=Encodes a copine-like protein%2C which is a member of a newly identified class of calcium-dependent%2C phospholipid binding proteins that are present in a wide range of organisms. Overexpression of this gene suppresses bon1-1 phenotypes. Double mutant analyses with bon1-1 suggest that BON1 and BON3 have overlapping functions in maintaining cellular homeostasis and inhibiting cell death.; conf_class=1; symbol=BON3; full_name=BONZAI 3; computational_description=BONZAI 3 (BON3)%3B FUNCTIONS IN: calcium-dependent phospholipid binding%3B INVOLVED IN: N-terminal protein myristoylation%2C cellular homeostasis%2C positive regulation of cellular defense response%2C negative regulation of cell death%3B EXPRESSED IN: sperm cell%2C male gametophyte%2C flower%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029)%2C C2 calcium/lipid-binding domain%2C CaLB (InterPro:IPR008973)%2C Copine (InterPro:IPR010734)%2C C2 calcium-dependent membrane targeting (InterPro:IPR000008)%2C von Willebrand factor%2C type A (InterPro:IPR002035)%3B BEST Arabidopsis thaliana protein match is: DCD (Development and Cell Death) domain protein (TAIR:AT5G61910.4)%3B Has 1559 Blast hits to 1479 proteins in 107 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 903%3B Fungi - 12%3B Plants - 319%3B Viruses - 0%3B Other Eukaryotes - 325 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12912986, PMID:16367962, PMID:16510518, PMID:18775970, PMID:19522566, locus:2036074; locus_type=protein_coding
AT1G08870.1	chr1:002846536	0.0	C/2846536-2846608	AT1G08870.1 tRNA AT1G08870 ID=AT1G08870.1; Parent=AT1G08870; Note=tRNA-Ala; computational_description=tRNA-Ala (anticodon: TGC); Dbxref=PMID:8980477, PMID:23066098, PMID:8980477, locus:3691305; Name=AT1G08870.1; locus_type=pre_trna
AT1G08880.1	chr1:002847144	0.0	C/2847144-2847365,2847470-2847676	AT1G08880.1 CDS AT1G08880 ID=AT1G08880.1; Parent=AT1G08880; Name=AT1G08880.1; Note=Histone superfamily protein; curator_summary=Encodes HTA5%2C a histone H2A protein. H2AX is a meiosis-specific isoform of histone H2A. Upon DSB formation%2C rapid accumulation of phosphorylated H2AX (%26#947%3B-H2AX) occurs around the break site. %01H2AX foci accumulate in early G2. Immunolocalization studies in spread preparations of wild-type meiocytes at G2/early leptotene revealed the accumulation of numerous rather diffuse %26#947%3B-H2AX foci throughout the chromatin. However%2C their accumulation is not contemporaneous with that of AtSPO11-1. At 3 h post-S%2C no %26#947%3B-H2AX foci are detected. During the 3- to 5-h window when AtSPO11-1 foci rapidly disappear%2C there is an equally swift accumulation of %26#947%3B-H2AX to a maximum of %3E50 diffuse foci. The level of %26#947%3BH2AX then remains constant for a further 13 h before undergoing a gradual decrease to 10%E2%80%9320 foci in the 18- to 24-h post-S period. By 30 h the foci have disappeared from the chromatin.; conf_class=2; symbol=H2AXA; computational_description=H2AXA%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: nucleosome assembly%3B LOCATED IN: nucleus%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Histone H2A (InterPro:IPR002119)%2C Histone-fold (InterPro:IPR009072)%2C Histone core (InterPro:IPR007125)%3B BEST Arabidopsis thaliana protein match is: gamma histone variant H2AX (TAIR:AT1G54690.1)%3B Has 3916 Blast hits to 3911 proteins in 363 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2550%3B Fungi - 318%3B Plants - 612%3B Viruses - 4%3B Other Eukaryotes - 432 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:15688252, PMID:15772150, PMID:16489130, PMID:16582009, PMID:16751347, PMID:17220196, PMID:17785529, PMID:18805951, PMID:21070408, locus:2036054; locus_type=protein_coding
AT1G08890.1	chr1:002848374	0.0	W/2848374-2848505,2848737-2848799,2848911-2849000,2849130-2849189,2849288-2849353,2849460-2849525,2849610-2849685,2849796-2849860,2849952-2850044,2850137-2850217,2850477-2850561,2850679-2850722,2850815-2850877,2850969-2851028,2851117-2851170,2851278-2851337,2851437-2851551,2851895-2852016	AT1G08890.1 CDS AT1G08890 ID=AT1G08890.1; Parent=AT1G08890; Name=AT1G08890.1; Note=Major facilitator superfamily protein; conf_class=2; computational_description=Major facilitator superfamily protein%3B FUNCTIONS IN: carbohydrate transmembrane transporter activity%2C sugar:hydrogen symporter activity%3B INVOLVED IN: transport%2C transmembrane transport%3B LOCATED IN: chloroplast%2C membrane%3B CONTAINS InterPro DOMAIN/s: Sugar transporter%2C conserved site (InterPro:IPR005829)%2C Major facilitator superfamily (InterPro:IPR020846)%2C General substrate transporter (InterPro:IPR005828)%2C Sugar/inositol transporter (InterPro:IPR003663)%2C Major facilitator superfamily%2C general substrate transporter (InterPro:IPR016196)%3B BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G08900.2)%3B Has 22268 Blast hits to 21798 proteins in 1696 species: Archae - 379%3B Bacteria - 7327%3B Metazoa - 4739%3B Fungi - 6227%3B Plants - 2471%3B Viruses - 0%3B Other Eukaryotes - 1125 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12805619, PMID:15341633, PMID:16463051, PMID:20736450, locus:2036039; locus_type=protein_coding
AT1G08900.1	chr1:002852478	0.0	W/2852478-2852603,2852716-2852778,2852906-2852995,2853110-2853169,2853271-2853336,2853436-2853501,2853604-2853679,2853779-2853843,2853946-2854038,2854143-2854223,2854334-2854418,2854523-2854566,2854658-2854720,2854812-2854871,2854968-2855021,2855130-2855189,2855281-2855395,2855489-2855610	AT1G08900.1 CDS AT1G08900 ID=AT1G08900.1; Parent=AT1G08900; Name=AT1G08900.1; Note=Major facilitator superfamily protein; conf_class=4; computational_description=Major facilitator superfamily protein%3B FUNCTIONS IN: carbohydrate transmembrane transporter activity%3B INVOLVED IN: transport%2C transmembrane transport%3B LOCATED IN: integral to membrane%2C membrane%3B CONTAINS InterPro DOMAIN/s: Sugar transporter%2C conserved site (InterPro:IPR005829)%2C Major facilitator superfamily (InterPro:IPR020846)%2C General substrate transporter (InterPro:IPR005828)%2C Sugar/inositol transporter (InterPro:IPR003663)%2C Major facilitator superfamily%2C general substrate transporter (InterPro:IPR016196)%3B BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G08890.1)%3B Has 23143 Blast hits to 22654 proteins in 1781 species: Archae - 437%3B Bacteria - 7818%3B Metazoa - 5011%3B Fungi - 6239%3B Plants - 2470%3B Viruses - 0%3B Other Eukaryotes - 1168 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:12620340, PMID:15010610, PMID:15235117, PMID:15347791, PMID:17220200, PMID:20736450, locus:2036009; locus_type=protein_coding
AT1G08900.2	chr1:002852478	0.0	W/2852478-2852603,2852716-2852778,2852906-2852995,2853110-2853169,2853271-2853336,2853436-2853501,2853604-2853679,2853779-2853843,2853946-2854038,2854143-2854223,2854334-2854418,2854523-2854566,2854658-2854720,2854812-2854871,2854968-2855021,2855130-2855189,2855281-2855395,2855489-2855610	AT1G08900.2 CDS AT1G08900 ID=AT1G08900.2; Parent=AT1G08900; Name=AT1G08900.2; Note=Major facilitator superfamily protein; conf_class=2; computational_description=Major facilitator superfamily protein%3B FUNCTIONS IN: carbohydrate transmembrane transporter activity%3B INVOLVED IN: transport%2C transmembrane transport%3B LOCATED IN: integral to membrane%2C membrane%3B CONTAINS InterPro DOMAIN/s: Sugar transporter%2C conserved site (InterPro:IPR005829)%2C Major facilitator superfamily (InterPro:IPR020846)%2C General substrate transporter (InterPro:IPR005828)%2C Sugar/inositol transporter (InterPro:IPR003663)%2C Major facilitator superfamily%2C general substrate transporter (InterPro:IPR016196)%3B BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G08890.1)%3B Has 23143 Blast hits to 22654 proteins in 1781 species: Archae - 437%3B Bacteria - 7818%3B Metazoa - 5011%3B Fungi - 6239%3B Plants - 2470%3B Viruses - 0%3B Other Eukaryotes - 1168 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12620340, PMID:15010610, PMID:15235117, PMID:15347791, PMID:17220200, PMID:20736450, locus:2036009; locus_type=protein_coding
AT1G08900.3	chr1:002852478	0.0	W/2852478-2852603,2852740-2852778,2852906-2852995,2853110-2853169,2853271-2853336,2853436-2853501,2853604-2853679,2853779-2853843,2853946-2854038,2854143-2854223,2854334-2854418,2854523-2854566,2854658-2854720,2854812-2854871,2854968-2855021,2855130-2855189,2855281-2855395,2855489-2855610	AT1G08900.3 CDS AT1G08900 ID=AT1G08900.3; Parent=AT1G08900; Name=AT1G08900.3; Note=Major facilitator superfamily protein; conf_class=2; computational_description=Major facilitator superfamily protein%3B FUNCTIONS IN: carbohydrate transmembrane transporter activity%3B INVOLVED IN: transport%2C transmembrane transport%3B LOCATED IN: integral to membrane%2C membrane%3B CONTAINS InterPro DOMAIN/s: Sugar transporter%2C conserved site (InterPro:IPR005829)%2C Major facilitator superfamily (InterPro:IPR020846)%2C General substrate transporter (InterPro:IPR005828)%2C Sugar/inositol transporter (InterPro:IPR003663)%2C Major facilitator superfamily%2C general substrate transporter (InterPro:IPR016196)%3B BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G08890.1)%3B Has 23143 Blast hits to 22654 proteins in 1781 species: Archae - 437%3B Bacteria - 7818%3B Metazoa - 5011%3B Fungi - 6239%3B Plants - 2470%3B Viruses - 0%3B Other Eukaryotes - 1168 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12620340, PMID:15010610, PMID:15235117, PMID:15347791, PMID:17220200, PMID:20736450, locus:2036009; locus_type=protein_coding
AT1G08900.4	chr1:002852478	0.0	W/2852478-2852603,2852716-2852778,2852906-2852995,2853110-2853169,2853271-2853336,2853436-2853501,2853604-2853679,2853779-2853843,2853946-2854038,2854143-2854223,2854334-2854418,2854523-2854566,2854658-2854720,2854812-2854871,2854968-2855021,2855130-2855189,2855281-2855436	AT1G08900.4 CDS AT1G08900 ID=AT1G08900.4; Parent=AT1G08900; Name=AT1G08900.4; Note=Major facilitator superfamily protein; computational_description=Major facilitator superfamily protein%3B FUNCTIONS IN: carbohydrate transmembrane transporter activity%3B INVOLVED IN: transport%2C transmembrane transport%3B LOCATED IN: integral to membrane%2C membrane%3B CONTAINS InterPro DOMAIN/s: Sugar transporter%2C conserved site (InterPro:IPR005829)%2C Major facilitator superfamily (InterPro:IPR020846)%2C General substrate transporter (InterPro:IPR005828)%2C Sugar/inositol transporter (InterPro:IPR003663)%2C Major facilitator superfamily%2C general substrate transporter (InterPro:IPR016196)%3B BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G08890.1)%3B Has 23143 Blast hits to 22654 proteins in 1781 species: Archae - 437%3B Bacteria - 7818%3B Metazoa - 5011%3B Fungi - 6239%3B Plants - 2470%3B Viruses - 0%3B Other Eukaryotes - 1168 (source: NCBI BLink).; Dbxref=PMID:12620340, PMID:15010610, PMID:15235117, PMID:15347791, PMID:17220200, PMID:20736450, locus:2036009; locus_type=protein_coding
AT1G08900.5	chr1:002852716	0.0	W/2852716-2852778,2852906-2852995,2853110-2853169,2853271-2853336,2853436-2853501,2853604-2853679,2853779-2853843,2853946-2854038,2854143-2854223,2854334-2854418,2854523-2854566,2854658-2854720,2854812-2854871,2854968-2855021,2855130-2855189,2855281-2855395,2855489-2855610	AT1G08900.5 CDS AT1G08900 ID=AT1G08900.5; Parent=AT1G08900; Name=AT1G08900.5; Note=Major facilitator superfamily protein; computational_description=Major facilitator superfamily protein%3B FUNCTIONS IN: carbohydrate transmembrane transporter activity%3B INVOLVED IN: transport%2C transmembrane transport%3B LOCATED IN: integral to membrane%2C membrane%3B CONTAINS InterPro DOMAIN/s: Sugar transporter%2C conserved site (InterPro:IPR005829)%2C Major facilitator superfamily (InterPro:IPR020846)%2C General substrate transporter (InterPro:IPR005828)%2C Sugar/inositol transporter (InterPro:IPR003663)%2C Major facilitator superfamily%2C general substrate transporter (InterPro:IPR016196)%3B BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G08890.1)%3B Has 23143 Blast hits to 22654 proteins in 1781 species: Archae - 437%3B Bacteria - 7818%3B Metazoa - 5011%3B Fungi - 6239%3B Plants - 2470%3B Viruses - 0%3B Other Eukaryotes - 1168 (source: NCBI BLink).; Dbxref=PMID:12620340, PMID:15010610, PMID:15235117, PMID:15347791, PMID:17220200, PMID:20736450, locus:2036009; locus_type=protein_coding
AT1G08910.1	chr1:002856227	0.0	W/2856227-2856249,2856421-2856483,2856606-2856678,2856776-2856844,2856941-2857006,2857087-2857169,2857301-2857352,2857431-2857502,2857779-2857846,2857936-2857984,2858076-2858160,2858237-2858338,2858503-2858554,2858653-2858704,2858995-2859057,2859193-2859846,2859953-2860816	AT1G08910.1 CDS AT1G08910 ID=AT1G08910.1; Parent=AT1G08910; Name=AT1G08910.1; Note=zinc ion binding protein; curator_summary=Encodes an SP-RING domain containing protein that functions in sumolaytion and is involved in positive regulation of sulfur metabolism and stress response.; conf_class=6; Alias=PIAL1, PROTEIN INHIBITOR OF ACTIVATED STAT LIKE 1; computational_description=FUNCTIONS IN: zinc ion binding%3B INVOLVED IN: embryo development ending in seed dormancy%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C MIZ-type (InterPro:IPR004181)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G41580.1)%3B Has 1002 Blast hits to 979 proteins in 199 species: Archae - 0%3B Bacteria - 25%3B Metazoa - 593%3B Fungi - 182%3B Plants - 101%3B Viruses - 6%3B Other Eukaryotes - 95 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:12620340, PMID:17163880, PMID:25415977, locus:2035999; locus_type=protein_coding
AT1G04673.1	chr1:002861646	0.0	C/2861646-2861854	AT1G04673.1 lnc_RNA AT1G04673 ID=AT1G04673.1; Parent=AT1G04673; Name=AT1G04673.1; locus_type=long_noncoding_rna
AT1G04677.1	chr1:002864583	0.0	C/2864583-2865011	AT1G04677.1 lnc_RNA AT1G04677 ID=AT1G04677.1; Parent=AT1G04677; Name=AT1G04677.1; locus_type=long_noncoding_rna
AT1G04683.1	chr1:002865518	0.0	C/2865518-2865792	AT1G04683.1 lnc_RNA AT1G04683 ID=AT1G04683.1; Parent=AT1G04683; Name=AT1G04683.1; locus_type=long_noncoding_rna
AT1TE09290	chr1:002865910	0.0	W/2865910-2866495	AT1TE09290 transposable_element AT1TE09290 ID=AT1TE09290; Name=AT1TE09290; Alias=ATREP1
AT1TE09295	chr1:002866496	0.0	C/2866496-2866523	AT1TE09295 transposable_element AT1TE09295 ID=AT1TE09295; Name=AT1TE09295; Alias=ATREP3
AT1G08920.1	chr1:002867446	0.0	W/2867446-2867592,2867683-2867745,2867843-2867932,2868011-2868136,2868231-2868296,2868398-2868473,2868569-2868633,2868716-2868808,2868904-2868984,2869078-2869162,2869251-2869294,2869378-2869440,2869536-2869595,2869714-2869767,2869860-2869919,2870014-2870128,2870236-2870360	AT1G08920.1 CDS AT1G08920 ID=AT1G08920.1; Parent=AT1G08920; Name=AT1G08920.1; Note=ERD (early response to dehydration) six-like 1; curator_summary=Encodes ESL1%2C a transporter for monosaccharides.; conf_class=2; symbol=ESL1; full_name=ERD (early response to dehydration) six-like 1; computational_description=ERD (early response to dehydration) six-like 1 (ESL1)%3B CONTAINS InterPro DOMAIN/s: Sugar transporter%2C conserved site (InterPro:IPR005829)%2C Major facilitator superfamily (InterPro:IPR020846)%2C General substrate transporter (InterPro:IPR005828)%2C Sugar/inositol transporter (InterPro:IPR003663)%2C Major facilitator superfamily%2C general substrate transporter (InterPro:IPR016196)%3B BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G08930.2)%3B Has 23660 Blast hits to 23155 proteins in 1879 species: Archae - 378%3B Bacteria - 9422%3B Metazoa - 4252%3B Fungi - 6142%3B Plants - 2335%3B Viruses - 0%3B Other Eukaryotes - 1131 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12481097, PMID:12620340, PMID:15086800, PMID:17408486, PMID:18230142, PMID:18805951, PMID:19901034, PMID:20736450, PMID:23148892, PMID:23383346, locus:2035984; locus_type=protein_coding
AT1G08920.2	chr1:002867446	0.0	W/2867446-2867592,2867683-2867745,2867843-2867932,2868011-2868136,2868231-2868296,2868398-2868473,2868569-2868633,2868716-2868808,2868904-2868984,2869078-2869162,2869251-2869294,2869378-2869440,2869515-2869595,2869714-2869767,2869860-2869919,2870014-2870128,2870236-2870360	AT1G08920.2 CDS AT1G08920 ID=AT1G08920.2; Parent=AT1G08920; Name=AT1G08920.2; Note=ERD (early response to dehydration) six-like 1; curator_summary=Encodes ESL1%2C a transporter for monosaccharides.; conf_class=2; symbol=ESL1; full_name=ERD (early response to dehydration) six-like 1; computational_description=ERD (early response to dehydration) six-like 1 (ESL1)%3B CONTAINS InterPro DOMAIN/s: Sugar transporter%2C conserved site (InterPro:IPR005829)%2C Major facilitator superfamily (InterPro:IPR020846)%2C General substrate transporter (InterPro:IPR005828)%2C Sugar/inositol transporter (InterPro:IPR003663)%2C Major facilitator superfamily%2C general substrate transporter (InterPro:IPR016196)%3B BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G08930.2)%3B Has 23660 Blast hits to 23155 proteins in 1879 species: Archae - 378%3B Bacteria - 9422%3B Metazoa - 4252%3B Fungi - 6142%3B Plants - 2335%3B Viruses - 0%3B Other Eukaryotes - 1131 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12481097, PMID:12620340, PMID:15086800, PMID:17408486, PMID:18230142, PMID:18805951, PMID:19901034, PMID:20736450, PMID:23148892, PMID:23383346, locus:2035984; locus_type=protein_coding
AT1G08920.3	chr1:002867446	0.0	W/2867446-2867592,2867683-2867745,2867843-2867932,2868011-2868136,2868231-2868296,2868398-2868473,2868569-2868633,2868716-2868808,2868904-2868984,2869078-2869162,2869251-2869294,2869378-2869440,2869536-2869595,2869714-2869767,2869860-2869919,2870014-2870190	AT1G08920.3 CDS AT1G08920 ID=AT1G08920.3; Parent=AT1G08920; Name=AT1G08920.3; Note=ERD (early response to dehydration) six-like 1; curator_summary=Encodes ESL1%2C a transporter for monosaccharides.; conf_class=2; symbol=ESL1; full_name=ERD (early response to dehydration) six-like 1; computational_description=ERD (early response to dehydration) six-like 1 (ESL1)%3B CONTAINS InterPro DOMAIN/s: Sugar transporter%2C conserved site (InterPro:IPR005829)%2C Major facilitator superfamily (InterPro:IPR020846)%2C General substrate transporter (InterPro:IPR005828)%2C Sugar/inositol transporter (InterPro:IPR003663)%2C Major facilitator superfamily%2C general substrate transporter (InterPro:IPR016196)%3B BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G08930.2)%3B Has 23660 Blast hits to 23155 proteins in 1879 species: Archae - 378%3B Bacteria - 9422%3B Metazoa - 4252%3B Fungi - 6142%3B Plants - 2335%3B Viruses - 0%3B Other Eukaryotes - 1131 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12481097, PMID:12620340, PMID:15086800, PMID:17408486, PMID:18230142, PMID:18805951, PMID:19901034, PMID:20736450, PMID:23148892, PMID:23383346, locus:2035984; locus_type=protein_coding
AT1G08930.1	chr1:002873604	0.0	W/2873604-2873828,2873958-2874020,2874096-2874185,2874311-2874370,2874492-2874557,2874648-2874713,2874816-2874891,2874996-2875060,2875210-2875302,2875415-2875495,2875635-2875719,2875824-2875867,2875961-2876023,2876121-2876180,2876326-2876439,2876639-2876753,2876855-2876979	AT1G08930.1 CDS AT1G08930 ID=AT1G08930.1; Parent=AT1G08930; Name=AT1G08930.1; Note=Major facilitator superfamily protein; curator_summary=encodes a putative sucrose transporter whose gene expression is induced by dehydration and cold.; conf_class=2; symbol=ERD6; full_name=EARLY RESPONSE TO DEHYDRATION 6; computational_description=EARLY RESPONSE TO DEHYDRATION 6 (ERD6)%3B FUNCTIONS IN: carbohydrate transmembrane transporter activity%2C sugar:hydrogen symporter activity%2C sugar transmembrane transporter activity%3B INVOLVED IN: response to water deprivation%2C response to salt stress%2C response to cold%2C response to chitin%2C response to abscisic acid stimulus%3B LOCATED IN: integral to membrane%2C membrane%3B EXPRESSED IN: 30 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Sugar transporter%2C conserved site (InterPro:IPR005829)%2C Major facilitator superfamily (InterPro:IPR020846)%2C General substrate transporter (InterPro:IPR005828)%2C Sugar/inositol transporter (InterPro:IPR003663)%2C Major facilitator superfamily%2C general substrate transporter (InterPro:IPR016196)%3B BEST Arabidopsis thaliana protein match is: ERD (early response to dehydration) six-like 1 (TAIR:AT1G08920.1)%3B Has 27777 Blast hits to 27182 proteins in 2058 species: Archae - 500%3B Bacteria - 11725%3B Metazoa - 4936%3B Fungi - 6599%3B Plants - 2746%3B Viruses - 0%3B Other Eukaryotes - 1271 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9545564, PMID:8075396, PMID:12102506, PMID:12620340, PMID:15598803, PMID:15713015, PMID:16424108, PMID:16539732, PMID:16514558, PMID:16603666, PMID:16581911, PMID:16980540, PMID:17722694, PMID:17705847, PMID:18436742, PMID:18552355, PMID:18650403, PMID:19901034, locus:2036084; locus_type=protein_coding
AT1G08930.2	chr1:002873604	0.0	W/2873604-2873828,2873958-2874020,2874096-2874185,2874311-2874370,2874492-2874557,2874648-2874713,2874816-2874891,2874996-2875060,2875210-2875302,2875415-2875495,2875635-2875719,2875824-2875867,2875961-2876023,2876121-2876180,2876326-2876439,2876639-2876753,2876855-2876979	AT1G08930.2 CDS AT1G08930 ID=AT1G08930.2; Parent=AT1G08930; Name=AT1G08930.2; Note=Major facilitator superfamily protein; curator_summary=encodes a putative sucrose transporter whose gene expression is induced by dehydration and cold.; conf_class=6; symbol=ERD6; full_name=EARLY RESPONSE TO DEHYDRATION 6; computational_description=EARLY RESPONSE TO DEHYDRATION 6 (ERD6)%3B FUNCTIONS IN: carbohydrate transmembrane transporter activity%2C sugar:hydrogen symporter activity%2C sugar transmembrane transporter activity%3B INVOLVED IN: response to water deprivation%2C response to salt stress%2C response to cold%2C response to chitin%2C response to abscisic acid stimulus%3B LOCATED IN: integral to membrane%2C membrane%3B EXPRESSED IN: 30 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Sugar transporter%2C conserved site (InterPro:IPR005829)%2C Major facilitator superfamily (InterPro:IPR020846)%2C General substrate transporter (InterPro:IPR005828)%2C Sugar/inositol transporter (InterPro:IPR003663)%2C Major facilitator superfamily%2C general substrate transporter (InterPro:IPR016196)%3B BEST Arabidopsis thaliana protein match is: ERD (early response to dehydration) six-like 1 (TAIR:AT1G08920.1)%3B Has 27777 Blast hits to 27182 proteins in 2058 species: Archae - 500%3B Bacteria - 11725%3B Metazoa - 4936%3B Fungi - 6599%3B Plants - 2746%3B Viruses - 0%3B Other Eukaryotes - 1271 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:9545564, PMID:8075396, PMID:12102506, PMID:12620340, PMID:15598803, PMID:15713015, PMID:16424108, PMID:16539732, PMID:16514558, PMID:16603666, PMID:16581911, PMID:16980540, PMID:17722694, PMID:17705847, PMID:18436742, PMID:18552355, PMID:18650403, PMID:19901034, locus:2036084; locus_type=protein_coding
AT1G08940.1	chr1:002877694	0.0	W/2877694-2878150,2878716-2879104	AT1G08940.1 CDS AT1G08940 ID=AT1G08940.1; Parent=AT1G08940; Name=AT1G08940.1; Note=Phosphoglycerate mutase family protein; conf_class=2; computational_description=Phosphoglycerate mutase family protein%3B FUNCTIONS IN: catalytic activity%3B INVOLVED IN: metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Histidine phosphatase superfamily%2C clade-1 (InterPro:IPR013078)%2C Phosphoglycerate/bisphosphoglycerate mutase%2C active site (InterPro:IPR001345)%3B BEST Arabidopsis thaliana protein match is: Phosphoglycerate mutase family protein (TAIR:AT3G05170.1)%3B Has 1152 Blast hits to 1140 proteins in 473 species: Archae - 9%3B Bacteria - 736%3B Metazoa - 2%3B Fungi - 189%3B Plants - 85%3B Viruses - 0%3B Other Eukaryotes - 131 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12620340, PMID:12753585, PMID:15737980, locus:2036069; locus_type=protein_coding
AT1G08950.1	chr1:002879303	0.0	W/2879303-2879374	AT1G08950.1 tRNA AT1G08950 ID=AT1G08950.1; Parent=AT1G08950; Note=tRNA-Pro; computational_description=tRNA-Pro (anticodon: AGG); Dbxref=PMID:12620340, PMID:8980477, PMID:23066098, PMID:12620340, PMID:8980477, locus:3691302; Name=AT1G08950.1; locus_type=pre_trna
AT1G08960.1	chr1:002879698	0.0	W/2879698-2880573,2881113-2881877	AT1G08960.1 CDS AT1G08960 ID=AT1G08960.1; Parent=AT1G08960; Name=AT1G08960.1; Note=cation exchanger 11; curator_summary=Encodes a member of the Potassium-dependent sodium-calcium exchanger like-family that localizes to the plasma membrane and nuclear periphery%2C and has a role in mediating high-af%26#64257%3Bnity K+ uptake and Na+ transport in yeast.; conf_class=1; symbol=CAX11; Alias=ATCAX11, CATION EXCHANGER 11, AtCXX5, Arabidopsis thaliana cation calcium exchanger 5, CCX5, cation calcium exchanger 5; full_name=cation exchanger 11; computational_description=cation exchanger 11 (CAX11)%3B FUNCTIONS IN: cation:cation antiporter activity%2C calcium:sodium antiporter activity%3B INVOLVED IN: cation transport%2C transmembrane transport%3B LOCATED IN: endomembrane system%2C integral to membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Sodium/calcium exchanger membrane region (InterPro:IPR004837)%3B BEST Arabidopsis thaliana protein match is: calcium exchanger 7 (TAIR:AT5G17860.1)%3B Has 4219 Blast hits to 2943 proteins in 815 species: Archae - 83%3B Bacteria - 1788%3B Metazoa - 1182%3B Fungi - 291%3B Plants - 224%3B Viruses - 0%3B Other Eukaryotes - 651 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11500563, PMID:12620340, PMID:17086450, PMID:21945443, locus:2036049; locus_type=protein_coding
AT1G08970.1	chr1:002883144	0.0	W/2883144-2883839	AT1G08970.1 CDS AT1G08970 ID=AT1G08970.1; Parent=AT1G08970; Name=AT1G08970.1; Note=nuclear factor Y%2C subunit C9; curator_summary=heme activated protein (HAP5c); conf_class=2; symbol=NF-YC9; Alias=HAP5C, HEME ACTIVATED PROTEIN 5C; full_name=nuclear factor Y%2C subunit C9; computational_description=nuclear factor Y%2C subunit C9 (NF-YC9)%3B CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958)%2C Histone-fold (InterPro:IPR009072)%3B BEST Arabidopsis thaliana protein match is: nuclear factor Y%2C subunit C3 (TAIR:AT1G54830.3)%3B Has 1343 Blast hits to 1343 proteins in 228 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 451%3B Fungi - 349%3B Plants - 427%3B Viruses - 0%3B Other Eukaryotes - 116 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:12620340, PMID:12671079, PMID:14645734, PMID:15610358, PMID:16623906, PMID:17138697, PMID:17470057, PMID:20487380, locus:2036034; locus_type=protein_coding
AT1G08970.2	chr1:002883144	0.0	W/2883144-2883839	AT1G08970.2 CDS AT1G08970 ID=AT1G08970.2; Parent=AT1G08970; Name=AT1G08970.2; Note=nuclear factor Y%2C subunit C9; curator_summary=heme activated protein (HAP5c); conf_class=2; symbol=NF-YC9; Alias=HAP5C, HEME ACTIVATED PROTEIN 5C; full_name=nuclear factor Y%2C subunit C9; computational_description=nuclear factor Y%2C subunit C9 (NF-YC9)%3B CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958)%2C Histone-fold (InterPro:IPR009072)%3B BEST Arabidopsis thaliana protein match is: nuclear factor Y%2C subunit C3 (TAIR:AT1G54830.3)%3B Has 1343 Blast hits to 1343 proteins in 228 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 451%3B Fungi - 349%3B Plants - 427%3B Viruses - 0%3B Other Eukaryotes - 116 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:12620340, PMID:12671079, PMID:14645734, PMID:15610358, PMID:16623906, PMID:17138697, PMID:17470057, PMID:20487380, locus:2036034; locus_type=protein_coding
AT1G08970.3	chr1:002883144	0.0	W/2883144-2883839	AT1G08970.3 CDS AT1G08970 ID=AT1G08970.3; Parent=AT1G08970; Name=AT1G08970.3; Note=nuclear factor Y%2C subunit C9; curator_summary=heme activated protein (HAP5c); conf_class=2; symbol=NF-YC9; Alias=HAP5C, HEME ACTIVATED PROTEIN 5C; full_name=nuclear factor Y%2C subunit C9; computational_description=nuclear factor Y%2C subunit C9 (NF-YC9)%3B CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958)%2C Histone-fold (InterPro:IPR009072)%3B BEST Arabidopsis thaliana protein match is: nuclear factor Y%2C subunit C3 (TAIR:AT1G54830.3)%3B Has 1343 Blast hits to 1343 proteins in 228 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 451%3B Fungi - 349%3B Plants - 427%3B Viruses - 0%3B Other Eukaryotes - 116 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:12620340, PMID:12671079, PMID:14645734, PMID:15610358, PMID:16623906, PMID:17138697, PMID:17470057, PMID:20487380, locus:2036034; locus_type=protein_coding
AT1G08970.4	chr1:002883144	0.0	W/2883144-2883839	AT1G08970.4 CDS AT1G08970 ID=AT1G08970.4; Parent=AT1G08970; Name=AT1G08970.4; Note=nuclear factor Y%2C subunit C9; curator_summary=heme activated protein (HAP5c); conf_class=2; symbol=NF-YC9; Alias=HAP5C, HEME ACTIVATED PROTEIN 5C; full_name=nuclear factor Y%2C subunit C9; computational_description=nuclear factor Y%2C subunit C9 (NF-YC9)%3B CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958)%2C Histone-fold (InterPro:IPR009072)%3B BEST Arabidopsis thaliana protein match is: nuclear factor Y%2C subunit C3 (TAIR:AT1G54830.3)%3B Has 1343 Blast hits to 1343 proteins in 228 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 451%3B Fungi - 349%3B Plants - 427%3B Viruses - 0%3B Other Eukaryotes - 116 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:12620340, PMID:12671079, PMID:14645734, PMID:15610358, PMID:16623906, PMID:17138697, PMID:17470057, PMID:20487380, locus:2036034; locus_type=protein_coding
AT1G08980.1	chr1:002884455	0.0	W/2884455-2884567,2884649-2884801,2884934-2885058,2885150-2885275,2885351-2885533,2885614-2885770,2885840-2886008,2886099-2886233,2886314-2886430	AT1G08980.1 CDS AT1G08980 ID=AT1G08980.1; Parent=AT1G08980; Name=AT1G08980.1; Note=amidase 1; curator_summary=Encodes an enzyme with similarity to bacterial acylamidohydrolases and exhibits indole-3-acetamide amidohydrolase activity in vitro. This enzyme may be involved in the in vivo biosynthesis of indole-acetic acid from indole-3-acetamide%2C a native metabolite of A. thaliana. It appears to exist as a monomer.; conf_class=2; symbol=AMI1; Alias=ATAMI1, AMIDASE-LIKE PROTEIN 1, ATTOC64-I, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, TOC64-I, TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I; full_name=amidase 1; computational_description=amidase 1 (AMI1)%3B FUNCTIONS IN: amidase activity%2C hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds%2C indoleacetamide hydrolase activity%3B INVOLVED IN: indoleacetic acid biosynthetic process%3B LOCATED IN: cytoplasm%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Amidase%2C conserved site (InterPro:IPR020556)%2C Amidase (InterPro:IPR000120)%3B BEST Arabidopsis thaliana protein match is: translocon at the outer membrane of chloroplasts 64-V (TAIR:AT5G09420.1)%3B Has 18462 Blast hits to 18443 proteins in 2488 species: Archae - 262%3B Bacteria - 10888%3B Metazoa - 543%3B Fungi - 1390%3B Plants - 376%3B Viruses - 0%3B Other Eukaryotes - 5003 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12620340, PMID:14741350, PMID:16738862, PMID:17555521, PMID:17655652, PMID:18989364, PMID:19086173, PMID:19887500, PMID:20701997, PMID:21150258, PMID:23505340, PMID:23510449, locus:2036029; locus_type=protein_coding
AT1TE09360	chr1:002886425	0.0	C/2886425-2886533	AT1TE09360 transposable_element AT1TE09360 ID=AT1TE09360; Name=AT1TE09360; Alias=ATREP4
AT1TE09365	chr1:002886534	0.0	C/2886534-2887304	AT1TE09365 transposable_element AT1TE09365 ID=AT1TE09365; Name=AT1TE09365; Alias=ATHPOGON3
AT1TE09370	chr1:002887305	0.0	W/2887305-2887328	AT1TE09370 transposable_element AT1TE09370 ID=AT1TE09370; Name=AT1TE09370; Alias=ARNOLDY2
AT1G08985.1	chr1:002887329	0.0	W/2887329-2887634	AT1G08985.1 CDS AT1G08985 ID=AT1G08985.1; Parent=AT1G08985; Name=AT1G08985.1; Note=AP2/B3-like transcriptional factor family protein; conf_class=1; computational_description=AP2/B3-like transcriptional factor family protein%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340)%3B BEST Arabidopsis thaliana protein match is: F-box associated ubiquitination effector family protein (TAIR:AT2G21920.1)%3B Has 35 Blast hits to 35 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 35%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:1005716737; locus_type=protein_coding
AT1TE09375	chr1:002887329	0.0	C/2887329-2887590	AT1TE09375 transposable_element AT1TE09375 ID=AT1TE09375; Name=AT1TE09375; Alias=HELITRONY3
AT1TE09380	chr1:002887591	0.0	C/2887591-2888195	AT1TE09380 transposable_element AT1TE09380 ID=AT1TE09380; Name=AT1TE09380; Alias=HELITRONY1D
AT1G08990.1	chr1:002888753	0.0	W/2888753-2889500,2889638-2890104,2890268-2890753	AT1G08990.1 CDS AT1G08990 ID=AT1G08990.1; Parent=AT1G08990; Name=AT1G08990.1; Note=plant glycogenin-like starch initiation protein 5; conf_class=4; symbol=PGSIP5; Alias=GUX5, Glucuronic Acid Substitution of Xylan 5; full_name=plant glycogenin-like starch initiation protein 5; computational_description=plant glycogenin-like starch initiation protein 5 (PGSIP5)%3B FUNCTIONS IN: transferase activity%2C transferring glycosyl groups%3B INVOLVED IN: biosynthetic process%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: root%3B CONTAINS InterPro DOMAIN/s: Glycosyl transferase%2C family 8 (InterPro:IPR002495)%3B BEST Arabidopsis thaliana protein match is: plant glycogenin-like starch initiation protein 4 (TAIR:AT1G54940.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:12620340, PMID:22537759, PMID:22706449, PMID:23373848, locus:2036024; locus_type=protein_coding
AT1G09000.1	chr1:002891111	0.0	W/2891111-2891407,2891524-2891565,2891662-2891727,2891828-2891938,2892018-2892098,2892182-2892259,2892400-2892482,2892624-2892705,2892787-2892887,2892999-2893038,2893123-2893182,2893267-2893316,2893415-2893634,2893751-2893921,2894015-2894367,2894630-2894700,2894893-2894987	AT1G09000.1 CDS AT1G09000 ID=AT1G09000.1; Parent=AT1G09000; Name=AT1G09000.1; Note=NPK1-related protein kinase 1; curator_summary=NPK1-related protein kinase 1S; conf_class=2; symbol=NP1; Alias=ANP1, NPK1-related protein kinase 1, MAPKKK1, MAP KINASE KINASE KINASE 1; full_name=NPK1-related protein kinase 1; computational_description=NPK1-related protein kinase 1 (NP1)%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Mitogen activated protein kinase kinase kinase 3 (InterPro:IPR015748)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%3B BEST Arabidopsis thaliana protein match is: NPK1-related protein kinase 2 (TAIR:AT1G54960.1)%3B Has 134800 Blast hits to 132536 proteins in 4716 species: Archae - 154%3B Bacteria - 14967%3B Metazoa - 50642%3B Fungi - 13331%3B Plants - 33399%3B Viruses - 553%3B Other Eukaryotes - 21754 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10717008, PMID:9263451, PMID:11875555, PMID:12034900, PMID:12119167, PMID:12620340, PMID:14718171, PMID:20802223, PMID:21477822, PMID:23027702, PMID:23979944, PMID:24812107, locus:2035989; locus_type=protein_coding
AT1G09000.2	chr1:002891111	0.0	W/2891111-2891407,2891524-2891565,2891662-2891727,2891828-2891938,2892018-2892098,2892182-2892259,2892400-2892482,2892624-2892705,2892787-2892887,2892999-2893038,2893123-2893182,2893267-2893316,2893415-2893634,2893751-2893921,2894015-2894395	AT1G09000.2 CDS AT1G09000 ID=AT1G09000.2; Parent=AT1G09000; Name=AT1G09000.2; Note=NPK1-related protein kinase 1; symbol=NP1; Alias=ANP1, NPK1-related protein kinase 1, MAPKKK1, MAP KINASE KINASE KINASE 1; full_name=NPK1-related protein kinase 1; curator_summary=NPK1-related protein kinase 1S; computational_description=NPK1-related protein kinase 1 (NP1)%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Mitogen activated protein kinase kinase kinase 3 (InterPro:IPR015748)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%3B BEST Arabidopsis thaliana protein match is: NPK1-related protein kinase 2 (TAIR:AT1G54960.1)%3B Has 134800 Blast hits to 132536 proteins in 4716 species: Archae - 154%3B Bacteria - 14967%3B Metazoa - 50642%3B Fungi - 13331%3B Plants - 33399%3B Viruses - 553%3B Other Eukaryotes - 21754 (source: NCBI BLink).; Dbxref=PMID:10717008, PMID:9263451, PMID:11875555, PMID:12034900, PMID:12119167, PMID:12620340, PMID:14718171, PMID:20802223, PMID:21477822, PMID:23027702, PMID:23979944, PMID:24812107, locus:2035989; locus_type=protein_coding
AT1G09010.1	chr1:002895259	0.0	C/2895259-2895993,2896146-2896373,2896541-2897185,2897266-2897470,2897557-2897726,2897840-2898070,2898181-2898229,2898305-2898363,2898448-2898672,2898762-2898900,2899139-2899287	AT1G09010.1 CDS AT1G09010 ID=AT1G09010.1; Parent=AT1G09010; Name=AT1G09010.1; Note=glycoside hydrolase family 2 protein; conf_class=2; computational_description=glycoside hydrolase family 2 protein%3B FUNCTIONS IN: cation binding%2C hydrolase activity%2C hydrolyzing O-glycosyl compounds%2C catalytic activity%3B INVOLVED IN: carbohydrate metabolic process%3B LOCATED IN: vacuole%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Glycoside hydrolase family 2%2C immunoglobulin-like beta-sandwich (InterPro:IPR006102)%2C Glycoside hydrolase%2C catalytic core (InterPro:IPR017853)%2C Glycoside hydrolase family 2%2C TIM barrel (InterPro:IPR006103)%2C Glycoside hydrolase%2C family 2 (InterPro:IPR006101)%2C Glycoside hydrolase family 2%2C carbohydrate-binding (InterPro:IPR006104)%2C Galactose-binding domain-like (InterPro:IPR008979)%2C Glycoside hydrolase%2C family 2/20%2C immunoglobulin-like beta-sandwich domain (InterPro:IPR013812)%2C Glycoside hydrolase%2C subgroup%2C catalytic core (InterPro:IPR013781)%3B Has 5072 Blast hits to 5044 proteins in 1162 species: Archae - 18%3B Bacteria - 3983%3B Metazoa - 234%3B Fungi - 319%3B Plants - 43%3B Viruses - 2%3B Other Eukaryotes - 473 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12620340, PMID:15247239, PMID:15539469, PMID:15713887, PMID:20736450, locus:2036094; locus_type=protein_coding
AT1G09020.1	chr1:002900149	0.0	C/2900149-2900243,2900348-2900465,2900658-2900727,2900815-2900878,2901266-2901439,2901728-2901872,2902037-2902171,2902352-2902441,2902652-2902711,2902839-2902961,2903243-2903419,2903853-2903940,2904088-2904212	AT1G09020.1 CDS AT1G09020 ID=AT1G09020.1; Parent=AT1G09020; Name=AT1G09020.1; Note=sucrose nonfermenting-like protein; curator_summary=putative activator subunit of SNF1-related protein kinase; conf_class=1; symbol=SNF4; Alias=ATSNF4, KIN%26#946%3B%26#947%3B; full_name=homolog of yeast sucrose nonfermenting 4; computational_description=homolog of yeast sucrose nonfermenting 4 (SNF4)%3B CONTAINS InterPro DOMAIN/s: Cystathionine beta-synthase%2C core (InterPro:IPR000644)%3B BEST Arabidopsis thaliana protein match is: 5'-AMP-activated protein kinase-related (TAIR:AT1G27070.1)%3B Has 1379 Blast hits to 1368 proteins in 272 species: Archae - 14%3B Bacteria - 104%3B Metazoa - 613%3B Fungi - 295%3B Plants - 229%3B Viruses - 0%3B Other Eukaryotes - 124 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:10929106, PMID:10417704, PMID:11252725, PMID:12383089, PMID:14535885, PMID:14690509, PMID:16367961, PMID:18775970, PMID:18854047, PMID:18831797, PMID:21235649, PMID:21477822, PMID:23551663, PMID:25736509, locus:2036079; locus_type=protein_coding
AT1G09030.1	chr1:002908611	0.0	C/2908611-2909030	AT1G09030.1 CDS AT1G09030 ID=AT1G09030.1; Parent=AT1G09030; Name=AT1G09030.1; Note=nuclear factor Y%2C subunit B4; conf_class=1; symbol=NF-YB4; full_name=nuclear factor Y%2C subunit B4; computational_description=nuclear factor Y%2C subunit B4 (NF-YB4)%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: intracellular%2C nucleus%3B CONTAINS InterPro DOMAIN/s: Transcription factor%2C CBFA/NFYB%2C DNA topoisomerase (InterPro:IPR003957)%2C Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958)%2C Histone-fold (InterPro:IPR009072)%2C Transcription factor%2C NFYB/HAP3%2C conserved site (InterPro:IPR003956)%3B BEST Arabidopsis thaliana protein match is: nuclear factor Y%2C subunit B5 (TAIR:AT2G47810.1)%3B Has 1487 Blast hits to 1487 proteins in 249 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 489%3B Fungi - 373%3B Plants - 505%3B Viruses - 0%3B Other Eukaryotes - 120 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11118137, PMID:12509518, PMID:16278345, PMID:17138697, locus:2036064; locus_type=protein_coding
AT1G09040.1	chr1:002912362	0.0	W/2912362-2913087,2913165-2915174	AT1G09040.1 CDS AT1G09040 ID=AT1G09040.1; Parent=AT1G09040; Name=AT1G09040.1; Note=arginine-glutamic acid dipeptide repeat protein; conf_class=1; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: membrane%3B EXPRESSED IN: leaf%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09050.1)%3B Has 614 Blast hits to 567 proteins in 104 species: Archae - 2%3B Bacteria - 12%3B Metazoa - 344%3B Fungi - 31%3B Plants - 81%3B Viruses - 0%3B Other Eukaryotes - 144 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:2036059; locus_type=protein_coding
AT1TE09470	chr1:002916187	0.0	C/2916187-2916730	AT1TE09470 transposable_element AT1TE09470 ID=AT1TE09470; Name=AT1TE09470; Alias=HELITRONY1B
AT1G09050.1	chr1:002918031	0.0	W/2918031-2918756,2918834-2920858	AT1G09050.1 CDS AT1G09050 ID=AT1G09050.1; Parent=AT1G09050; Name=AT1G09050.1; Note=arginine-glutamic acid dipeptide repeat protein; conf_class=1; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09040.1)%3B Has 552 Blast hits to 499 proteins in 115 species: Archae - 0%3B Bacteria - 86%3B Metazoa - 259%3B Fungi - 14%3B Plants - 77%3B Viruses - 0%3B Other Eukaryotes - 116 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:2036019; locus_type=protein_coding
AT1G09050.2	chr1:002918031	0.0	W/2918031-2918756,2918834-2920858	AT1G09050.2 CDS AT1G09050 ID=AT1G09050.2; Parent=AT1G09050; Name=AT1G09050.2; Note=arginine-glutamic acid dipeptide repeat protein; Dbxref=locus:2036019; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09040.1)%3B Has 552 Blast hits to 499 proteins in 115 species: Archae - 0%3B Bacteria - 86%3B Metazoa - 259%3B Fungi - 14%3B Plants - 77%3B Viruses - 0%3B Other Eukaryotes - 116 (source: NCBI BLink).; locus_type=protein_coding
AT1G09060.1	chr1:002921235	0.0	C/2921235-2921337,2921439-2921509,2921610-2921729,2921818-2921903,2921993-2922062,2922155-2922526,2922664-2922993,2923072-2923717,2923826-2923880,2923973-2924105,2924209-2924308,2924406-2924548,2924649-2925212	AT1G09060.1 CDS AT1G09060 ID=AT1G09060.1; Parent=AT1G09060; Name=AT1G09060.1; Note=JmjC domain protein JMJ24; conf_class=2; computational_description=Zinc finger%2C RING-type%3BTranscription factor jumonji/aspartyl beta-hydroxylase%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%2C zinc ion binding%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C Transcription factor jumonji (InterPro:IPR013129)%2C WRC (InterPro:IPR014977)%2C Cell division cycle-associated protein (InterPro:IPR018866)%3B BEST Arabidopsis thaliana protein match is: Transcription factor jumonji (jmjC) domain-containing protein (TAIR:AT4G00990.1)%3B Has 1115 Blast hits to 1061 proteins in 99 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 398%3B Fungi - 30%3B Plants - 639%3B Viruses - 0%3B Other Eukaryotes - 48 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11983057, PMID:18775970, locus:2036014; locus_type=protein_coding
AT1G09060.2	chr1:002921235	0.0	C/2921235-2921337,2921439-2921509,2921610-2921729,2921818-2921903,2921993-2922062,2922155-2922526,2922664-2922993,2923072-2923717,2923826-2923880,2923973-2924105,2924209-2924308,2924406-2924548,2924649-2925212	AT1G09060.2 CDS AT1G09060 ID=AT1G09060.2; Parent=AT1G09060; Name=AT1G09060.2; Note=JmjC domain protein JMJ24; conf_class=2; computational_description=Zinc finger%2C RING-type%3BTranscription factor jumonji/aspartyl beta-hydroxylase%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%2C zinc ion binding%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C Transcription factor jumonji (InterPro:IPR013129)%2C WRC (InterPro:IPR014977)%2C Cell division cycle-associated protein (InterPro:IPR018866)%3B BEST Arabidopsis thaliana protein match is: Transcription factor jumonji (jmjC) domain-containing protein (TAIR:AT4G00990.1)%3B Has 1115 Blast hits to 1061 proteins in 99 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 398%3B Fungi - 30%3B Plants - 639%3B Viruses - 0%3B Other Eukaryotes - 48 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11983057, PMID:18775970, locus:2036014; locus_type=protein_coding
AT1G09060.3	chr1:002921235	0.0	C/2921235-2921337,2921439-2921509,2921610-2921729,2921818-2921903,2921993-2922062,2922155-2922526,2922664-2922993,2923072-2923717,2923826-2923880,2923973-2924105,2924209-2924308,2924406-2924548,2924649-2925254	AT1G09060.3 CDS AT1G09060 ID=AT1G09060.3; Parent=AT1G09060; Name=AT1G09060.3; Note=JmjC domain protein JMJ24; conf_class=2; computational_description=Zinc finger%2C RING-type%3BTranscription factor jumonji/aspartyl beta-hydroxylase%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%2C zinc ion binding%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C Transcription factor jumonji (InterPro:IPR013129)%2C WRC (InterPro:IPR014977)%2C Cell division cycle-associated protein (InterPro:IPR018866)%3B BEST Arabidopsis thaliana protein match is: Transcription factor jumonji (jmjC) domain-containing protein (TAIR:AT4G00990.1)%3B Has 1115 Blast hits to 1061 proteins in 99 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 398%3B Fungi - 30%3B Plants - 639%3B Viruses - 0%3B Other Eukaryotes - 48 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11983057, PMID:18775970, locus:2036014; locus_type=protein_coding
AT1G09060.4	chr1:002921235	0.0	C/2921235-2921337,2921439-2921509,2921610-2921729,2921818-2921903,2921993-2922062,2922155-2922526,2922664-2922993,2923072-2923717,2923826-2923880,2923973-2924105,2924209-2924308,2924406-2924548,2924649-2925254	AT1G09060.4 CDS AT1G09060 ID=AT1G09060.4; Parent=AT1G09060; Name=AT1G09060.4; Note=JmjC domain protein JMJ24; Dbxref=PMID:11983057, PMID:18775970, locus:2036014; computational_description=Zinc finger%2C RING-type%3BTranscription factor jumonji/aspartyl beta-hydroxylase%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%2C zinc ion binding%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C Transcription factor jumonji (InterPro:IPR013129)%2C WRC (InterPro:IPR014977)%2C Cell division cycle-associated protein (InterPro:IPR018866)%3B BEST Arabidopsis thaliana protein match is: Transcription factor jumonji (jmjC) domain-containing protein (TAIR:AT4G00990.1)%3B Has 1115 Blast hits to 1061 proteins in 99 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 398%3B Fungi - 30%3B Plants - 639%3B Viruses - 0%3B Other Eukaryotes - 48 (source: NCBI BLink).; locus_type=protein_coding
AT1G09070.1	chr1:002927767	0.0	W/2927767-2928741	AT1G09070.1 CDS AT1G09070 ID=AT1G09070.1; Parent=AT1G09070; Name=AT1G09070.1; Note=soybean gene regulated by cold-2; curator_summary=SRC2 specifically binds the peptide PIEPPPHH%2C and moves from ER to a vacuole fraction where it gets internalized. Involved in Protein Storage Vacuole targeting.; conf_class=1; symbol=SRC2; Alias=(AT)SRC2, SOYBEAN GENE REGULATED BY COLD-2, AtSRC2; full_name=soybean gene regulated by cold-2; computational_description=soybean gene regulated by cold-2 (SRC2)%3B CONTAINS InterPro DOMAIN/s: C2 calcium/lipid-binding domain%2C CaLB (InterPro:IPR008973)%2C C2 calcium-dependent membrane targeting (InterPro:IPR000008)%3B BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT3G16510.1)%3B Has 25146 Blast hits to 15856 proteins in 1076 species: Archae - 6%3B Bacteria - 3010%3B Metazoa - 13770%3B Fungi - 3151%3B Plants - 2962%3B Viruses - 83%3B Other Eukaryotes - 2164 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12953064, PMID:14651343, PMID:15489280, PMID:15688252, PMID:16227454, PMID:16214899, PMID:16980540, PMID:16972165, PMID:17337630, PMID:17408486, PMID:18182375, PMID:18650403, PMID:18808718, PMID:18775970, PMID:20736450, PMID:23872431, locus:2036004; locus_type=protein_coding
AT1G09080.1	chr1:002929268	0.0	C/2929268-2929754,2929844-2930081,2930177-2930899,2931069-2931280,2931376-2931670,2931732-2931804	AT1G09080.1 CDS AT1G09080 ID=AT1G09080.1; Parent=AT1G09080; Name=AT1G09080.1; Note=Heat shock protein 70 (Hsp 70) family protein; conf_class=1; symbol=BIP3; full_name=binding protein 3; computational_description=BIP3%3B FUNCTIONS IN: ATP binding%3B INVOLVED IN: protein folding%2C response to heat%2C pollen tube growth%3B LOCATED IN: endoplasmic reticulum lumen%3B EXPRESSED IN: 10 plant structures%3B EXPRESSED DURING: 10 growth stages%3B CONTAINS InterPro DOMAIN/s: Heat shock protein 70%2C conserved site (InterPro:IPR018181)%2C Heat shock protein Hsp70 (InterPro:IPR001023)%2C Heat shock protein 70 (InterPro:IPR013126)%3B BEST Arabidopsis thaliana protein match is: heat shock protein 70 (Hsp 70) family protein (TAIR:AT5G28540.1)%3B Has 36561 Blast hits to 35981 proteins in 4871 species: Archae - 169%3B Bacteria - 17528%3B Metazoa - 4151%3B Fungi - 1824%3B Plants - 1283%3B Viruses - 337%3B Other Eukaryotes - 11269 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:8888624, PMID:11402207, PMID:12566592, PMID:12853141, PMID:14722088, PMID:15157177, PMID:15781873, PMID:15978049, PMID:16720694, PMID:18156219, PMID:18296626, PMID:18650403, PMID:18775970, PMID:19017746, PMID:19714218, PMID:21277284, PMID:21482766, PMID:21720949, PMID:22021418, PMID:22582100, PMID:23624714, PMID:24486762, locus:2035994; locus_type=protein_coding
AT1G09080.2	chr1:002929268	0.0	C/2929268-2929754,2929844-2930081,2930177-2930899,2931069-2931280,2931376-2931640,2931732-2931804	AT1G09080.2 CDS AT1G09080 ID=AT1G09080.2; Parent=AT1G09080; Name=AT1G09080.2; Note=Heat shock protein 70 (Hsp 70) family protein; conf_class=3; symbol=BIP3; full_name=binding protein 3; computational_description=BIP3%3B FUNCTIONS IN: ATP binding%3B INVOLVED IN: protein folding%2C response to heat%2C pollen tube growth%3B LOCATED IN: endoplasmic reticulum lumen%3B EXPRESSED IN: 10 plant structures%3B EXPRESSED DURING: 10 growth stages%3B CONTAINS InterPro DOMAIN/s: Heat shock protein 70%2C conserved site (InterPro:IPR018181)%2C Heat shock protein Hsp70 (InterPro:IPR001023)%2C Heat shock protein 70 (InterPro:IPR013126)%3B BEST Arabidopsis thaliana protein match is: heat shock protein 70 (Hsp 70) family protein (TAIR:AT5G28540.1)%3B Has 36561 Blast hits to 35981 proteins in 4871 species: Archae - 169%3B Bacteria - 17528%3B Metazoa - 4151%3B Fungi - 1824%3B Plants - 1283%3B Viruses - 337%3B Other Eukaryotes - 11269 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:8888624, PMID:11402207, PMID:12566592, PMID:12853141, PMID:14722088, PMID:15157177, PMID:15781873, PMID:15978049, PMID:16720694, PMID:18156219, PMID:18296626, PMID:18650403, PMID:18775970, PMID:19017746, PMID:19714218, PMID:21277284, PMID:21482766, PMID:21720949, PMID:22021418, PMID:22582100, PMID:23624714, PMID:24486762, locus:2035994; locus_type=protein_coding
AT1G09090.1	chr1:002932743	0.0	W/2932743-2933127,2933284-2933443,2933558-2933606,2933696-2933809,2933952-2934389,2934549-2934935,2935061-2935156,2935268-2935383,2935467-2935590	AT1G09090.1 CDS AT1G09090 ID=AT1G09090.1; Parent=AT1G09090; Name=AT1G09090.1; Note=respiratory burst oxidase-like protein; curator_summary=NADPH-oxidase AtrbohB plays a role in seed after-ripening. Major producer of superoxide in germinating seeds. AtrbohB pre-mRNA is alternatively spliced in seeds in a hormonally and developmentally regulated manner. ABA caused accumulation of AtrbohB-%C3%9F mRNA and prevented prevented AtrbohB-a mRNA expression in fresh seeds.; conf_class=1; symbol=RBOHB; Alias=ATRBOHB-BETA, ATRBOHB, respiratory burst oxidase homolog B; full_name=respiratory burst oxidase homolog B; computational_description=respiratory burst oxidase homolog B (RBOHB)%3B FUNCTIONS IN: NAD(P)H oxidase activity%3B INVOLVED IN: response to heat%2C seed germination%2C defense response%3B LOCATED IN: integral to membrane%2C membrane%3B EXPRESSED IN: embryo%2C root%3B EXPRESSED DURING: imbibition%3B CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927)%2C Cytochrome b245%2C heavy chain (InterPro:IPR000778)%2C EF-hand-like domain (InterPro:IPR011992)%2C Ferric reductase-like transmembrane component%2C N-terminal (InterPro:IPR013130)%2C NADPH oxidase Respiratory burst (InterPro:IPR013623)%2C EF-HAND 2 (InterPro:IPR018249)%2C FAD-binding 8 (InterPro:IPR013112)%2C Riboflavin synthase-like beta-barrel (InterPro:IPR017938)%3B BEST Arabidopsis thaliana protein match is: respiratory burst oxidase homologue D (TAIR:AT5G47910.1)%3B Has 1619 Blast hits to 1551 proteins in 238 species: Archae - 2%3B Bacteria - 81%3B Metazoa - 636%3B Fungi - 280%3B Plants - 489%3B Viruses - 0%3B Other Eukaryotes - 131 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:9628030, PMID:9490748, PMID:12372144, PMID:12773379, PMID:12913156, PMID:15047898, PMID:15923322, PMID:16081496, PMID:16362328, PMID:19761445, PMID:23095998, PMID:24510762, locus:2036104; locus_type=protein_coding
AT1G09090.2	chr1:002932743	0.0	W/2932743-2933127,2933284-2933443,2933558-2933606,2933696-2933809,2933952-2934389,2934549-2934935,2935061-2935156,2935268-2935383,2935467-2935569,2935644-2935717,2935797-2936296,2936386-2936495	AT1G09090.2 CDS AT1G09090 ID=AT1G09090.2; Parent=AT1G09090; Name=AT1G09090.2; Note=respiratory burst oxidase-like protein; curator_summary=NADPH-oxidase AtrbohB plays a role in seed after-ripening. Major producer of superoxide in germinating seeds. AtrbohB pre-mRNA is alternatively spliced in seeds in a hormonally and developmentally regulated manner. ABA caused accumulation of AtrbohB-%C3%9F mRNA and prevented prevented AtrbohB-a mRNA expression in fresh seeds.; conf_class=2; symbol=RBOHB; Alias=ATRBOHB-BETA, ATRBOHB, respiratory burst oxidase homolog B; full_name=respiratory burst oxidase homolog B; computational_description=respiratory burst oxidase homolog B (RBOHB)%3B FUNCTIONS IN: NAD(P)H oxidase activity%3B INVOLVED IN: response to heat%2C seed germination%2C defense response%3B LOCATED IN: integral to membrane%2C membrane%3B EXPRESSED IN: embryo%2C root%3B EXPRESSED DURING: imbibition%3B CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927)%2C Cytochrome b245%2C heavy chain (InterPro:IPR000778)%2C EF-hand-like domain (InterPro:IPR011992)%2C Ferric reductase-like transmembrane component%2C N-terminal (InterPro:IPR013130)%2C NADPH oxidase Respiratory burst (InterPro:IPR013623)%2C EF-HAND 2 (InterPro:IPR018249)%2C FAD-binding 8 (InterPro:IPR013112)%2C Riboflavin synthase-like beta-barrel (InterPro:IPR017938)%3B BEST Arabidopsis thaliana protein match is: respiratory burst oxidase homologue D (TAIR:AT5G47910.1)%3B Has 1619 Blast hits to 1551 proteins in 238 species: Archae - 2%3B Bacteria - 81%3B Metazoa - 636%3B Fungi - 280%3B Plants - 489%3B Viruses - 0%3B Other Eukaryotes - 131 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9628030, PMID:9490748, PMID:12372144, PMID:12773379, PMID:12913156, PMID:15047898, PMID:15923322, PMID:16081496, PMID:16362328, PMID:19761445, PMID:23095998, PMID:24510762, locus:2036104; locus_type=protein_coding
AT1G09100.1	chr1:002936675	0.0	C/2936675-2936752,2936832-2936972,2937153-2937272,2937354-2937441,2937519-2937637,2937734-2937925,2938024-2938215,2938334-2938441,2938681-2938797,2939142-2939258	AT1G09100.1 CDS AT1G09100 ID=AT1G09100.1; Parent=AT1G09100; Name=AT1G09100.1; Note=26S proteasome AAA-ATPase subunit RPT5B; curator_summary=Encodes RPT5b (Regulatory Particle 5b)%2C one of the six AAA-ATPases of the proteasome regulatory particle. Essential for gametophyte development. In Arabidopsis%2C the RPT5 subunit is encoded by two highly homologous genes%2C RPT5a and RPT5b. RPT5a and RPT5b show accession-dependent functional redundancy. In Wassilewskija (Ws) accession: mutant alleles of RPT5a displayed 50%25 pollen lethality%2C indicating that RPT5a is essential for male gametophyte development. In the Columbia (Col) accession%2C a rpt5a mutant allele did not display such a phenotype because the RPT5b Col allele complements the rpt5a defect in the male gametophyte%2C whereas the RPT5b Ws allele does not. Double rpt5a rpt5b mutants in Col background showed a complete male and female gametophyte lethal phenotype.; conf_class=2; symbol=RPT5B; full_name=26S proteasome AAA-ATPase subunit RPT5B; computational_description=26S proteasome AAA-ATPase subunit RPT5B (RPT5B)%3B FUNCTIONS IN: ATPase activity%2C calmodulin binding%3B INVOLVED IN: glucose mediated signaling pathway%2C proteasomal protein catabolic process%2C embryo sac development%2C pollen development%3B LOCATED IN: proteasome complex%2C plasma membrane%2C membrane%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C ATPase%2C AAA-type%2C core (InterPro:IPR003959)%2C ATPase%2C AAA-type%2C conserved site (InterPro:IPR003960)%2C 26S proteasome subunit P45 (InterPro:IPR005937)%3B BEST Arabidopsis thaliana protein match is: regulatory particle triple-A ATPase 5A (TAIR:AT3G05530.1)%3B Has 33470 Blast hits to 31156 proteins in 3185 species: Archae - 1434%3B Bacteria - 12401%3B Metazoa - 4942%3B Fungi - 3663%3B Plants - 3251%3B Viruses - 53%3B Other Eukaryotes - 7726 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11782485, PMID:12368493, PMID:15449379, PMID:17081979, PMID:18650403, PMID:19223514, PMID:19704756, PMID:20118269, PMID:20226671, PMID:20516081, PMID:20736450, PMID:20682047, PMID:21784786, locus:2036099; locus_type=protein_coding
AT1G09110.1	chr1:002939417	0.0	W/2939417-2939488	AT1G09110.1 tRNA AT1G09110 ID=AT1G09110.1; Parent=AT1G09110; Note=tRNA-Glu; computational_description=tRNA-Glu (anticodon: TTC); Dbxref=PMID:8980477, PMID:23066098, PMID:8980477, locus:3691308; Name=AT1G09110.1; locus_type=pre_trna
AT1G09130.3	chr1:002939731	0.0	C/2939731-2939859,2940072-2940152,2940365-2940448,2940523-2940576,2940797-2940870,2940958-2941054,2941213-2941272,2941351-2941473,2941547-2941648,2941909-2942217	AT1G09130.3 CDS AT1G09130 ID=AT1G09130.3; Parent=AT1G09130; Name=AT1G09130.3; Note=ATP-dependent caseinolytic (Clp) protease/crotonase family protein; conf_class=3; computational_description=ATP-dependent caseinolytic (Clp) protease/crotonase family protein%3B FUNCTIONS IN: serine-type endopeptidase activity%3B INVOLVED IN: proteolysis%3B LOCATED IN: in 6 components%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase S14%2C ClpP (InterPro:IPR001907)%3B BEST Arabidopsis thaliana protein match is: CLP protease proteolytic subunit 1 (TAIR:AT1G49970.1)%3B Has 11947 Blast hits to 11945 proteins in 2949 species: Archae - 0%3B Bacteria - 7353%3B Metazoa - 146%3B Fungi - 81%3B Plants - 1069%3B Viruses - 3%3B Other Eukaryotes - 3295 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11278690, PMID:12185496, PMID:14576160, PMID:14593120, PMID:14671022, PMID:16199612, PMID:16766689, PMID:16895613, PMID:16980539, PMID:17181860, PMID:18230142, PMID:18775970, locus:2036044; locus_type=protein_coding
AT1G09130.1	chr1:002940063	0.0	C/2940063-2940152,2940365-2940448,2940523-2940576,2940797-2940870,2940958-2941054,2941213-2941272,2941351-2941473,2941547-2941648,2941909-2942217	AT1G09130.1 CDS AT1G09130 ID=AT1G09130.1; Parent=AT1G09130; Name=AT1G09130.1; Note=ATP-dependent caseinolytic (Clp) protease/crotonase family protein; conf_class=2; computational_description=ATP-dependent caseinolytic (Clp) protease/crotonase family protein%3B FUNCTIONS IN: serine-type endopeptidase activity%3B INVOLVED IN: proteolysis%3B LOCATED IN: in 6 components%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase S14%2C ClpP (InterPro:IPR001907)%3B BEST Arabidopsis thaliana protein match is: CLP protease proteolytic subunit 1 (TAIR:AT1G49970.1)%3B Has 11947 Blast hits to 11945 proteins in 2949 species: Archae - 0%3B Bacteria - 7353%3B Metazoa - 146%3B Fungi - 81%3B Plants - 1069%3B Viruses - 3%3B Other Eukaryotes - 3295 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11278690, PMID:12185496, PMID:14576160, PMID:14593120, PMID:14671022, PMID:16199612, PMID:16766689, PMID:16895613, PMID:16980539, PMID:17181860, PMID:18230142, PMID:18775970, locus:2036044; locus_type=protein_coding
AT1G09130.2	chr1:002940063	0.0	C/2940063-2940152,2940365-2940448,2940523-2940576,2940797-2940870,2940958-2941054,2941213-2941272,2941351-2941473,2941547-2941648,2941909-2942217	AT1G09130.2 CDS AT1G09130 ID=AT1G09130.2; Parent=AT1G09130; Name=AT1G09130.2; Note=ATP-dependent caseinolytic (Clp) protease/crotonase family protein; conf_class=2; computational_description=ATP-dependent caseinolytic (Clp) protease/crotonase family protein%3B FUNCTIONS IN: serine-type endopeptidase activity%3B INVOLVED IN: proteolysis%3B LOCATED IN: in 6 components%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase S14%2C ClpP (InterPro:IPR001907)%3B BEST Arabidopsis thaliana protein match is: CLP protease proteolytic subunit 1 (TAIR:AT1G49970.1)%3B Has 11947 Blast hits to 11945 proteins in 2949 species: Archae - 0%3B Bacteria - 7353%3B Metazoa - 146%3B Fungi - 81%3B Plants - 1069%3B Viruses - 3%3B Other Eukaryotes - 3295 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11278690, PMID:12185496, PMID:14576160, PMID:14593120, PMID:14671022, PMID:16199612, PMID:16766689, PMID:16895613, PMID:16980539, PMID:17181860, PMID:18230142, PMID:18775970, locus:2036044; locus_type=protein_coding
AT1G09140.1	chr1:002942887	0.0	C/2942887-2942901,2943169-2943226,2944169-2944246,2944344-2944456,2944530-2944586,2944730-2944779,2944903-2944960,2945068-2945114,2945200-2945302,2945382-2945456,2945543-2945608,2945732-2945818	AT1G09140.1 CDS AT1G09140 ID=AT1G09140.1; Parent=AT1G09140; Name=AT1G09140.1; Note=SERINE-ARGININE PROTEIN 30; curator_summary=Encodes a serine-arginine rich RNA binding protein involved in regulation of splicing (including splicing of itself). Exists as 3 alternative spliced forms that are differentially expressed. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010%2C 22:2926.; conf_class=2; symbol=SR30; Alias=ATSRP30.1, ATSRP30.2, ATSRP30, SERINE-ARGININE PROTEIN 30, At-SR30, Serine/Arginine-Rich Protein Splicing Factor 30; full_name=Serine/Arginine-Rich Protein Splicing Factor 30; computational_description=SERINE-ARGININE PROTEIN 30 (ATSRP30)%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G02840.3)%3B Has 10547 Blast hits to 8837 proteins in 431 species: Archae - 0%3B Bacteria - 274%3B Metazoa - 6368%3B Fungi - 1180%3B Plants - 1529%3B Viruses - 86%3B Other Eukaryotes - 1110 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10215626, PMID:15034145, PMID:15047901, PMID:15270675, PMID:15452276, PMID:16520337, PMID:16839183, PMID:17556373, PMID:18650403, PMID:18775970, PMID:20736450, PMID:20884799, PMID:21935421, PMID:23132568, PMID:22563826, locus:2195346; locus_type=protein_coding
AT1G09140.2	chr1:002943528	0.0	C/2943528-2943564,2944169-2944246,2944344-2944456,2944530-2944586,2944730-2944779,2944903-2944960,2945068-2945114,2945200-2945302,2945382-2945456,2945543-2945608,2945732-2945818	AT1G09140.2 CDS AT1G09140 ID=AT1G09140.2; Parent=AT1G09140; Name=AT1G09140.2; Note=SERINE-ARGININE PROTEIN 30; curator_summary=Encodes a serine-arginine rich RNA binding protein involved in regulation of splicing (including splicing of itself). Exists as 3 alternative spliced forms that are differentially expressed. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010%2C 22:2926.; conf_class=2; symbol=SR30; Alias=ATSRP30.1, ATSRP30.2, ATSRP30, SERINE-ARGININE PROTEIN 30, At-SR30, Serine/Arginine-Rich Protein Splicing Factor 30; full_name=Serine/Arginine-Rich Protein Splicing Factor 30; computational_description=SERINE-ARGININE PROTEIN 30 (ATSRP30)%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G02840.3)%3B Has 10547 Blast hits to 8837 proteins in 431 species: Archae - 0%3B Bacteria - 274%3B Metazoa - 6368%3B Fungi - 1180%3B Plants - 1529%3B Viruses - 86%3B Other Eukaryotes - 1110 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10215626, PMID:15034145, PMID:15047901, PMID:15270675, PMID:15452276, PMID:16520337, PMID:16839183, PMID:17556373, PMID:18650403, PMID:18775970, PMID:20736450, PMID:20884799, PMID:21935421, PMID:23132568, PMID:22563826, locus:2195346; locus_type=protein_coding
AT1G09140.3	chr1:002944156	0.0	C/2944156-2944246,2944344-2944456,2944530-2944586,2944730-2944779,2944903-2944960,2945068-2945114,2945200-2945302,2945382-2945456,2945543-2945608,2945732-2945818	AT1G09140.3 CDS AT1G09140 ID=AT1G09140.3; Parent=AT1G09140; Name=AT1G09140.3; Note=SERINE-ARGININE PROTEIN 30; symbol=SR30; Alias=ATSRP30.1, ATSRP30.2, ATSRP30, SERINE-ARGININE PROTEIN 30, At-SR30, Serine/Arginine-Rich Protein Splicing Factor 30; full_name=Serine/Arginine-Rich Protein Splicing Factor 30; curator_summary=Encodes a serine-arginine rich RNA binding protein involved in regulation of splicing (including splicing of itself). Exists as 3 alternative spliced forms that are differentially expressed. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010%2C 22:2926.; computational_description=SERINE-ARGININE PROTEIN 30 (ATSRP30)%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G02840.3)%3B Has 10547 Blast hits to 8837 proteins in 431 species: Archae - 0%3B Bacteria - 274%3B Metazoa - 6368%3B Fungi - 1180%3B Plants - 1529%3B Viruses - 86%3B Other Eukaryotes - 1110 (source: NCBI BLink).; Dbxref=PMID:10215626, PMID:15034145, PMID:15047901, PMID:15270675, PMID:15452276, PMID:16520337, PMID:16839183, PMID:17556373, PMID:18650403, PMID:18775970, PMID:20736450, PMID:20884799, PMID:21935421, PMID:23132568, PMID:22563826, locus:2195346; locus_type=protein_coding
AT1G09150.1	chr1:002946599	0.0	W/2946599-2946609,2947210-2947291,2947388-2947455,2947557-2947654,2948174-2948310,2948393-2948460,2948710-2948773,2948891-2948908	AT1G09150.1 CDS AT1G09150 ID=AT1G09150.1; Parent=AT1G09150; Name=AT1G09150.1; Note=pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein; conf_class=2; computational_description=pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein%3B FUNCTIONS IN: RNA binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Pseudouridine synthase/archaeosine transglycosylase-like (InterPro:IPR015947)%2C Pseudouridine synthase/archaeosine transglycosylase (InterPro:IPR002478)%2C Translation-associated RNA-binding%2C predicted (InterPro:IPR016437)%2C Uncharacterised domain 2 (InterPro:IPR004521)%3B BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor SUI1 family protein (TAIR:AT1G71350.1)%3B Has 885 Blast hits to 883 proteins in 291 species: Archae - 148%3B Bacteria - 0%3B Metazoa - 325%3B Fungi - 155%3B Plants - 86%3B Viruses - 0%3B Other Eukaryotes - 171 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, locus:2195336; locus_type=protein_coding
AT1G09155.1	chr1:002949831	0.0	C/2949831-2950332,2950407-2950525,2950594-2950842	AT1G09155.1 CDS AT1G09155 ID=AT1G09155.1; Parent=AT1G09155; Name=AT1G09155.1; Note=phloem protein 2-B15; conf_class=1; symbol=PP2-B15; Alias=AtPP2-B15, phloem protein 2-B15; full_name=phloem protein 2-B15; computational_description=phloem protein 2-B15 (PP2-B15)%3B FUNCTIONS IN: carbohydrate binding%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 6 plant structures%3B EXPRESSED DURING: 4 anthesis%2C C globular stage%2C petal differentiation and expansion stage%3B BEST Arabidopsis thaliana protein match is: phloem protein 2-B13 (TAIR:AT1G56240.1)%3B Has 535 Blast hits to 526 proteins in 37 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 535%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12529520, PMID:16244144, locus:505006110; locus_type=protein_coding
AT1G09157.1	chr1:002951665	0.0	C/2951665-2952396	AT1G09157.1 CDS AT1G09157 ID=AT1G09157.1; Parent=AT1G09157; Name=AT1G09157.1; Note=transmembrane protein%2C putative (DUF679); conf_class=1; computational_description=Protein of unknown function (DUF679)%3B LOCATED IN: chloroplast%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF679 (InterPro:IPR007770)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF679) (TAIR:AT5G39650.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:20712629, locus:1009023066; locus_type=protein_coding
AT1G09160.1	chr1:002953199	0.0	C/2953199-2953418,2953530-2953762,2953846-2953971,2954055-2954162,2954290-2954507,2954600-2954771,2954850-2955059	AT1G09160.1 CDS AT1G09160 ID=AT1G09160.1; Parent=AT1G09160; Name=AT1G09160.1; Note=Protein phosphatase 2C family protein; conf_class=2; computational_description=Protein phosphatase 2C family protein%3B FUNCTIONS IN: protein serine/threonine phosphatase activity%2C catalytic activity%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932)%2C Protein phosphatase 2C (InterPro:IPR015655)%2C Protein phosphatase 2C%2C N-terminal (InterPro:IPR014045)%3B BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT1G68410.2)%3B Has 5570 Blast hits to 5569 proteins in 486 species: Archae - 4%3B Bacteria - 416%3B Metazoa - 1194%3B Fungi - 467%3B Plants - 2390%3B Viruses - 7%3B Other Eukaryotes - 1092 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12218065, PMID:15130549, PMID:18650403, PMID:19021904, locus:2195331; locus_type=protein_coding
AT1G09160.2	chr1:002953199	0.0	C/2953199-2953418,2953530-2953762,2953846-2953971,2954055-2954162,2954290-2954507,2954600-2954771,2954850-2955059	AT1G09160.2 CDS AT1G09160 ID=AT1G09160.2; Parent=AT1G09160; Name=AT1G09160.2; Note=Protein phosphatase 2C family protein; conf_class=2; computational_description=Protein phosphatase 2C family protein%3B FUNCTIONS IN: protein serine/threonine phosphatase activity%2C catalytic activity%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932)%2C Protein phosphatase 2C (InterPro:IPR015655)%2C Protein phosphatase 2C%2C N-terminal (InterPro:IPR014045)%3B BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT1G68410.2)%3B Has 5570 Blast hits to 5569 proteins in 486 species: Archae - 4%3B Bacteria - 416%3B Metazoa - 1194%3B Fungi - 467%3B Plants - 2390%3B Viruses - 7%3B Other Eukaryotes - 1092 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12218065, PMID:15130549, PMID:18650403, PMID:19021904, locus:2195331; locus_type=protein_coding
AT1G09170.1	chr1:002956589	0.0	C/2956589-2956724,2956806-2957269,2957371-2957571,2957667-2957830,2957969-2958222,2958484-2958640,2958846-2958921,2959016-2959122,2959303-2959479,2959592-2959687,2959827-2959908,2960014-2960178,2960310-2960402,2960511-2960579,2960666-2960737,2960821-2961069,2961206-2961349,2961592-2961791,2962081-2962207	AT1G09170.1 CDS AT1G09170 ID=AT1G09170.1; Parent=AT1G09170; Name=AT1G09170.1; Note=P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain-containing protein; conf_class=6; computational_description=P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain%3B FUNCTIONS IN: microtubule motor activity%2C ATP binding%3B INVOLVED IN: microtubule-based movement%3B EXPRESSED IN: shoot%2C male gametophyte%2C root%2C flower%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%3B CONTAINS InterPro DOMAIN/s: Kinesin%2C motor region%2C conserved site (InterPro:IPR019821)%2C Calponin-homology (InterPro:IPR016146)%2C Calponin-like actin-binding (InterPro:IPR001715)%2C Kinesin%2C motor domain (InterPro:IPR001752)%3B BEST Arabidopsis thaliana protein match is: kinesin 4 (TAIR:AT5G27000.1)%3B Has 11983 Blast hits to 11146 proteins in 466 species: Archae - 0%3B Bacteria - 101%3B Metazoa - 5767%3B Fungi - 1479%3B Plants - 1905%3B Viruses - 0%3B Other Eukaryotes - 2731 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:14500793, PMID:18775970, PMID:20736450, PMID:22253603, locus:2195316; locus_type=protein_coding
AT1G09170.5	chr1:002956589	0.0	C/2956589-2956724,2956806-2957269,2957371-2957571,2957667-2957830,2957969-2958222,2958484-2958645,2958743-2958921,2959016-2959122,2959303-2959479,2959592-2959687,2959827-2959908,2960014-2960178,2960310-2960402,2960511-2960579,2960666-2960737,2960821-2961069,2961206-2961349,2961592-2961791,2962081-2962207	AT1G09170.5 CDS AT1G09170 ID=AT1G09170.5; Parent=AT1G09170; Name=AT1G09170.5; Note=P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain-containing protein; computational_description=P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain%3B FUNCTIONS IN: microtubule motor activity%2C ATP binding%3B INVOLVED IN: microtubule-based movement%3B EXPRESSED IN: shoot%2C male gametophyte%2C root%2C flower%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%3B CONTAINS InterPro DOMAIN/s: Kinesin%2C motor region%2C conserved site (InterPro:IPR019821)%2C Calponin-homology (InterPro:IPR016146)%2C Calponin-like actin-binding (InterPro:IPR001715)%2C Kinesin%2C motor domain (InterPro:IPR001752)%3B BEST Arabidopsis thaliana protein match is: kinesin 4 (TAIR:AT5G27000.1)%3B Has 11983 Blast hits to 11146 proteins in 466 species: Archae - 0%3B Bacteria - 101%3B Metazoa - 5767%3B Fungi - 1479%3B Plants - 1905%3B Viruses - 0%3B Other Eukaryotes - 2731 (source: NCBI BLink).; Dbxref=PMID:14500793, PMID:18775970, PMID:20736450, PMID:22253603, locus:2195316; locus_type=protein_coding
AT1G09170.2	chr1:002957227	0.0	C/2957227-2957571,2957667-2957830,2957969-2958222,2958484-2958645,2958743-2958921,2959016-2959122,2959303-2959479,2959592-2959687,2959827-2959908,2960014-2960178,2960310-2960402,2960511-2960579,2960666-2960737,2960821-2961069,2961206-2961349,2961592-2961791,2962081-2962207	AT1G09170.2 CDS AT1G09170 ID=AT1G09170.2; Parent=AT1G09170; Name=AT1G09170.2; Note=P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain-containing protein; computational_description=P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain%3B FUNCTIONS IN: microtubule motor activity%2C ATP binding%3B INVOLVED IN: microtubule-based movement%3B EXPRESSED IN: shoot%2C male gametophyte%2C root%2C flower%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%3B CONTAINS InterPro DOMAIN/s: Kinesin%2C motor region%2C conserved site (InterPro:IPR019821)%2C Calponin-homology (InterPro:IPR016146)%2C Calponin-like actin-binding (InterPro:IPR001715)%2C Kinesin%2C motor domain (InterPro:IPR001752)%3B BEST Arabidopsis thaliana protein match is: kinesin 4 (TAIR:AT5G27000.1)%3B Has 11983 Blast hits to 11146 proteins in 466 species: Archae - 0%3B Bacteria - 101%3B Metazoa - 5767%3B Fungi - 1479%3B Plants - 1905%3B Viruses - 0%3B Other Eukaryotes - 2731 (source: NCBI BLink).; Dbxref=PMID:14500793, PMID:18775970, PMID:20736450, PMID:22253603, locus:2195316; locus_type=protein_coding
AT1G09170.4	chr1:002957282	0.0	C/2957282-2957284,2957371-2957571,2957667-2957830,2957969-2958222,2958484-2958645,2958743-2958921,2959016-2959122,2959303-2959479,2959592-2959687,2959827-2959908,2960014-2960178,2960310-2960402,2960511-2960579,2960666-2960737,2960821-2961069,2961206-2961349,2961592-2961791,2962081-2962207	AT1G09170.4 CDS AT1G09170 ID=AT1G09170.4; Parent=AT1G09170; Name=AT1G09170.4; Note=P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain-containing protein; computational_description=P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain%3B FUNCTIONS IN: microtubule motor activity%2C ATP binding%3B INVOLVED IN: microtubule-based movement%3B EXPRESSED IN: shoot%2C male gametophyte%2C root%2C flower%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%3B CONTAINS InterPro DOMAIN/s: Kinesin%2C motor region%2C conserved site (InterPro:IPR019821)%2C Calponin-homology (InterPro:IPR016146)%2C Calponin-like actin-binding (InterPro:IPR001715)%2C Kinesin%2C motor domain (InterPro:IPR001752)%3B BEST Arabidopsis thaliana protein match is: kinesin 4 (TAIR:AT5G27000.1)%3B Has 11983 Blast hits to 11146 proteins in 466 species: Archae - 0%3B Bacteria - 101%3B Metazoa - 5767%3B Fungi - 1479%3B Plants - 1905%3B Viruses - 0%3B Other Eukaryotes - 2731 (source: NCBI BLink).; Dbxref=PMID:14500793, PMID:18775970, PMID:20736450, PMID:22253603, locus:2195316; locus_type=protein_coding
AT1G09170.3	chr1:002957559	0.0	C/2957559-2957830,2957969-2958222,2958484-2958645,2958743-2958921,2959016-2959122,2959303-2959479,2959592-2959687,2959827-2959908,2960014-2960178,2960310-2960402,2960511-2960579,2960666-2960737,2960821-2961069,2961206-2961349,2961592-2961791,2962081-2962207	AT1G09170.3 CDS AT1G09170 ID=AT1G09170.3; Parent=AT1G09170; Name=AT1G09170.3; Note=P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain-containing protein; computational_description=P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain%3B FUNCTIONS IN: microtubule motor activity%2C ATP binding%3B INVOLVED IN: microtubule-based movement%3B EXPRESSED IN: shoot%2C male gametophyte%2C root%2C flower%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%3B CONTAINS InterPro DOMAIN/s: Kinesin%2C motor region%2C conserved site (InterPro:IPR019821)%2C Calponin-homology (InterPro:IPR016146)%2C Calponin-like actin-binding (InterPro:IPR001715)%2C Kinesin%2C motor domain (InterPro:IPR001752)%3B BEST Arabidopsis thaliana protein match is: kinesin 4 (TAIR:AT5G27000.1)%3B Has 11983 Blast hits to 11146 proteins in 466 species: Archae - 0%3B Bacteria - 101%3B Metazoa - 5767%3B Fungi - 1479%3B Plants - 1905%3B Viruses - 0%3B Other Eukaryotes - 2731 (source: NCBI BLink).; Dbxref=PMID:14500793, PMID:18775970, PMID:20736450, PMID:22253603, locus:2195316; locus_type=protein_coding
AT1G09170.7	chr1:002957559	0.0	C/2957559-2957830,2957969-2958222,2958484-2958645,2958743-2958921,2959016-2959122,2959303-2959479,2959592-2959687,2959827-2959908,2960014-2960178,2960310-2960402,2960511-2960579,2960666-2960737,2960821-2961069,2961206-2961349,2961592-2961791,2962081-2962207	AT1G09170.7 CDS AT1G09170 ID=AT1G09170.7; Parent=AT1G09170; Name=AT1G09170.7; Note=P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain-containing protein; computational_description=P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain%3B FUNCTIONS IN: microtubule motor activity%2C ATP binding%3B INVOLVED IN: microtubule-based movement%3B EXPRESSED IN: shoot%2C male gametophyte%2C root%2C flower%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%3B CONTAINS InterPro DOMAIN/s: Kinesin%2C motor region%2C conserved site (InterPro:IPR019821)%2C Calponin-homology (InterPro:IPR016146)%2C Calponin-like actin-binding (InterPro:IPR001715)%2C Kinesin%2C motor domain (InterPro:IPR001752)%3B BEST Arabidopsis thaliana protein match is: kinesin 4 (TAIR:AT5G27000.1)%3B Has 11983 Blast hits to 11146 proteins in 466 species: Archae - 0%3B Bacteria - 101%3B Metazoa - 5767%3B Fungi - 1479%3B Plants - 1905%3B Viruses - 0%3B Other Eukaryotes - 2731 (source: NCBI BLink).; Dbxref=PMID:14500793, PMID:18775970, PMID:20736450, PMID:22253603, locus:2195316; locus_type=protein_coding
AT1G09170.6	chr1:002957925	0.0	C/2957925-2958222,2958484-2958645,2958743-2958921,2959016-2959122,2959303-2959479,2959592-2959687,2959827-2959908,2960014-2960178,2960310-2960402,2960511-2960579,2960666-2960737,2960821-2961069,2961206-2961349,2961592-2961791,2962081-2962207	AT1G09170.6 CDS AT1G09170 ID=AT1G09170.6; Parent=AT1G09170; Name=AT1G09170.6; Note=P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain-containing protein; computational_description=P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain%3B FUNCTIONS IN: microtubule motor activity%2C ATP binding%3B INVOLVED IN: microtubule-based movement%3B EXPRESSED IN: shoot%2C male gametophyte%2C root%2C flower%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%3B CONTAINS InterPro DOMAIN/s: Kinesin%2C motor region%2C conserved site (InterPro:IPR019821)%2C Calponin-homology (InterPro:IPR016146)%2C Calponin-like actin-binding (InterPro:IPR001715)%2C Kinesin%2C motor domain (InterPro:IPR001752)%3B BEST Arabidopsis thaliana protein match is: kinesin 4 (TAIR:AT5G27000.1)%3B Has 11983 Blast hits to 11146 proteins in 466 species: Archae - 0%3B Bacteria - 101%3B Metazoa - 5767%3B Fungi - 1479%3B Plants - 1905%3B Viruses - 0%3B Other Eukaryotes - 2731 (source: NCBI BLink).; Dbxref=PMID:14500793, PMID:18775970, PMID:20736450, PMID:22253603, locus:2195316; locus_type=protein_coding
AT1G09170.8	chr1:002957925	0.0	C/2957925-2958222,2958484-2958645,2958743-2958921,2959016-2959122,2959303-2959479,2959592-2959687,2959827-2959908,2960014-2960178,2960310-2960402,2960511-2960579,2960666-2960737,2960821-2961069,2961206-2961349,2961592-2961791,2962081-2962207	AT1G09170.8 CDS AT1G09170 ID=AT1G09170.8; Parent=AT1G09170; Name=AT1G09170.8; Note=P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain-containing protein; computational_description=P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain%3B FUNCTIONS IN: microtubule motor activity%2C ATP binding%3B INVOLVED IN: microtubule-based movement%3B EXPRESSED IN: shoot%2C male gametophyte%2C root%2C flower%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%3B CONTAINS InterPro DOMAIN/s: Kinesin%2C motor region%2C conserved site (InterPro:IPR019821)%2C Calponin-homology (InterPro:IPR016146)%2C Calponin-like actin-binding (InterPro:IPR001715)%2C Kinesin%2C motor domain (InterPro:IPR001752)%3B BEST Arabidopsis thaliana protein match is: kinesin 4 (TAIR:AT5G27000.1)%3B Has 11983 Blast hits to 11146 proteins in 466 species: Archae - 0%3B Bacteria - 101%3B Metazoa - 5767%3B Fungi - 1479%3B Plants - 1905%3B Viruses - 0%3B Other Eukaryotes - 2731 (source: NCBI BLink).; Dbxref=PMID:14500793, PMID:18775970, PMID:20736450, PMID:22253603, locus:2195316; locus_type=protein_coding
AT1G09176.1	chr1:002964152	0.0	W/2964152-2964604	AT1G09176.1 CDS AT1G09176 ID=AT1G09176.1; Parent=AT1G09176; Name=AT1G09176.1; Note=transmembrane protein; conf_class=4; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=***; Dbxref=locus:4515102509; locus_type=protein_coding
AT1G09180.1	chr1:002965147	0.0	W/2965147-2965275,2965384-2965515,2965621-2965941	AT1G09180.1 CDS AT1G09180 ID=AT1G09180.1; Parent=AT1G09180; Name=AT1G09180.1; Note=secretion-associated RAS super family 1; curator_summary=A member of ARF-like GTPase family. A thaliana has 21 members%2C in two subfamilies%2C ARF and ARF-like (ARL) GTPases.; conf_class=2; symbol=SARA1A; Alias=ATSAR1, SECRETION-ASSOCIATED RAS 1, ATSARA1A, secretion-associated RAS super family 1; full_name=secretion-associated RAS super family 1; computational_description=secretion-associated RAS super family 1 (SARA1A)%3B FUNCTIONS IN: GTP binding%3B INVOLVED IN: intracellular protein transport%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 15 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225)%2C Small GTPase SAR1-type (InterPro:IPR006687)%2C ARF/SAR superfamily (InterPro:IPR006689)%3B BEST Arabidopsis thaliana protein match is: secretion-associated RAS 1B (TAIR:AT1G56330.1)%3B Has 6779 Blast hits to 6777 proteins in 381 species: Archae - 2%3B Bacteria - 35%3B Metazoa - 3324%3B Fungi - 1254%3B Plants - 1081%3B Viruses - 0%3B Other Eukaryotes - 1083 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12566592, PMID:12644670, PMID:12853141, PMID:15236667, PMID:16297073, PMID:17227549, PMID:17496105, PMID:18650403, PMID:18775970, PMID:18854047, PMID:19017746, PMID:24587212, locus:2195306; locus_type=protein_coding
AT1G09190.1	chr1:002966263	0.0	C/2966263-2967717	AT1G09190.1 CDS AT1G09190 ID=AT1G09190.1; Parent=AT1G09190; Name=AT1G09190.1; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; conf_class=1; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: shoot apex%2C embryo%2C sperm cell%2C flower%2C seed%3B EXPRESSED DURING: petal differentiation and expansion stage%2C E expanded cotyledon stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: mitochondrial editing factor 21 (TAIR:AT2G20540.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:2195296; locus_type=protein_coding
AT1G09195.10	chr1:002968720	0.0	C/2968720-2968758,2968970-2969077,2969375-2969494,2969575-2969655,2969763-2969804,2969982-2970134,2970363-2971457	AT1G09195.10 CDS AT1G09195 ID=AT1G09195.10; Parent=AT1G09195; Name=AT1G09195.10; Note=Ppx-GppA phosphatase; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: mitochondrion%3B CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase%2C HD subdomain (InterPro:IPR006674)%2C Ppx/GppA phosphatase (InterPro:IPR003695)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=locus:4515102510; locus_type=protein_coding
AT1G09195.11	chr1:002968720	0.0	C/2968720-2968758,2968970-2969077,2969375-2969494,2969575-2969655,2969763-2969804,2969982-2970134,2970363-2971457	AT1G09195.11 CDS AT1G09195 ID=AT1G09195.11; Parent=AT1G09195; Name=AT1G09195.11; Note=Ppx-GppA phosphatase; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: mitochondrion%3B CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase%2C HD subdomain (InterPro:IPR006674)%2C Ppx/GppA phosphatase (InterPro:IPR003695)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=locus:4515102510; locus_type=protein_coding
AT1G09195.12	chr1:002968720	0.0	C/2968720-2968758,2968970-2969077,2969375-2969494,2969575-2969655,2969763-2969804,2969982-2970134,2970363-2971457	AT1G09195.12 CDS AT1G09195 ID=AT1G09195.12; Parent=AT1G09195; Name=AT1G09195.12; Note=Ppx-GppA phosphatase; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: mitochondrion%3B CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase%2C HD subdomain (InterPro:IPR006674)%2C Ppx/GppA phosphatase (InterPro:IPR003695)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=locus:4515102510; locus_type=protein_coding
AT1G09195.13	chr1:002968720	0.0	C/2968720-2968758,2968970-2969077,2969375-2969494,2969575-2969655,2969763-2969804,2969982-2970134,2970363-2971457	AT1G09195.13 CDS AT1G09195 ID=AT1G09195.13; Parent=AT1G09195; Name=AT1G09195.13; Note=Ppx-GppA phosphatase; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: mitochondrion%3B CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase%2C HD subdomain (InterPro:IPR006674)%2C Ppx/GppA phosphatase (InterPro:IPR003695)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=locus:4515102510; locus_type=protein_coding
AT1G09195.14	chr1:002968720	0.0	C/2968720-2968758,2968970-2969077,2969375-2969494,2969575-2969655,2969763-2969804,2969982-2970134,2970363-2970721,2971078-2971138	AT1G09195.14 CDS AT1G09195 ID=AT1G09195.14; Parent=AT1G09195; Name=AT1G09195.14; Note=Ppx-GppA phosphatase; Dbxref=locus:4515102510; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: mitochondrion%3B CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase%2C HD subdomain (InterPro:IPR006674)%2C Ppx/GppA phosphatase (InterPro:IPR003695)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; locus_type=protein_coding
AT1G09195.15	chr1:002968720	0.0	C/2968720-2968758,2968970-2969077,2969375-2969494,2969575-2969655,2969763-2969804,2969982-2970134,2970363-2970721,2971078-2971138	AT1G09195.15 CDS AT1G09195 ID=AT1G09195.15; Parent=AT1G09195; Name=AT1G09195.15; Note=Ppx-GppA phosphatase; Dbxref=locus:4515102510; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: mitochondrion%3B CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase%2C HD subdomain (InterPro:IPR006674)%2C Ppx/GppA phosphatase (InterPro:IPR003695)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; locus_type=protein_coding
AT1G09195.1	chr1:002968720	0.0	C/2968720-2968758,2968970-2969077,2969375-2969494,2969575-2969655,2969763-2969804,2969982-2970134,2970363-2970721,2971078-2971138	AT1G09195.1 CDS AT1G09195 ID=AT1G09195.1; Parent=AT1G09195; Name=AT1G09195.1; Note=Ppx-GppA phosphatase; conf_class=2; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: mitochondrion%3B CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase%2C HD subdomain (InterPro:IPR006674)%2C Ppx/GppA phosphatase (InterPro:IPR003695)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:4515102510; locus_type=protein_coding
AT1G09195.2	chr1:002968720	0.0	C/2968720-2968758,2968970-2969077,2969375-2969494,2969575-2969655,2969763-2969804,2969982-2970134,2970363-2971457	AT1G09195.2 CDS AT1G09195 ID=AT1G09195.2; Parent=AT1G09195; Name=AT1G09195.2; Note=Ppx-GppA phosphatase; conf_class=5; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: mitochondrion%3B CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase%2C HD subdomain (InterPro:IPR006674)%2C Ppx/GppA phosphatase (InterPro:IPR003695)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=***; Dbxref=locus:4515102510; locus_type=protein_coding
AT1G09195.8	chr1:002968720	0.0	C/2968720-2968758,2968970-2969077,2969375-2969494,2969575-2969655,2969763-2969804,2969982-2970134,2970363-2971457	AT1G09195.8 CDS AT1G09195 ID=AT1G09195.8; Parent=AT1G09195; Name=AT1G09195.8; Note=Ppx-GppA phosphatase; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: mitochondrion%3B CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase%2C HD subdomain (InterPro:IPR006674)%2C Ppx/GppA phosphatase (InterPro:IPR003695)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=locus:4515102510; locus_type=protein_coding
AT1G09195.6	chr1:002969232	0.0	C/2969232-2969282,2969375-2969494,2969575-2969655,2969763-2969804,2969982-2970134,2970363-2971457	AT1G09195.6 CDS AT1G09195 ID=AT1G09195.6; Parent=AT1G09195; Name=AT1G09195.6; Note=Ppx-GppA phosphatase; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: mitochondrion%3B CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase%2C HD subdomain (InterPro:IPR006674)%2C Ppx/GppA phosphatase (InterPro:IPR003695)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=locus:4515102510; locus_type=protein_coding
AT1G09195.3	chr1:002969249	0.0	C/2969249-2969494,2969575-2969655,2969763-2969804,2969982-2970134,2970363-2971457	AT1G09195.3 CDS AT1G09195 ID=AT1G09195.3; Parent=AT1G09195; Name=AT1G09195.3; Note=Ppx-GppA phosphatase; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: mitochondrion%3B CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase%2C HD subdomain (InterPro:IPR006674)%2C Ppx/GppA phosphatase (InterPro:IPR003695)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=locus:4515102510; locus_type=protein_coding
AT1G09195.4	chr1:002969249	0.0	C/2969249-2969494,2969575-2969655,2969763-2969804,2969982-2970134,2970363-2971457	AT1G09195.4 CDS AT1G09195 ID=AT1G09195.4; Parent=AT1G09195; Name=AT1G09195.4; Note=Ppx-GppA phosphatase; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: mitochondrion%3B CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase%2C HD subdomain (InterPro:IPR006674)%2C Ppx/GppA phosphatase (InterPro:IPR003695)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=locus:4515102510; locus_type=protein_coding
AT1G09195.5	chr1:002969249	0.0	C/2969249-2969494,2969575-2969655,2969763-2969804,2969982-2970134,2970363-2971457	AT1G09195.5 CDS AT1G09195 ID=AT1G09195.5; Parent=AT1G09195; Name=AT1G09195.5; Note=Ppx-GppA phosphatase; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: mitochondrion%3B CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase%2C HD subdomain (InterPro:IPR006674)%2C Ppx/GppA phosphatase (InterPro:IPR003695)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=locus:4515102510; locus_type=protein_coding
AT1G09195.7	chr1:002969249	0.0	C/2969249-2969494,2969575-2969655,2969763-2969804,2969982-2970134,2970363-2971457	AT1G09195.7 CDS AT1G09195 ID=AT1G09195.7; Parent=AT1G09195; Name=AT1G09195.7; Note=Ppx-GppA phosphatase; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: mitochondrion%3B CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase%2C HD subdomain (InterPro:IPR006674)%2C Ppx/GppA phosphatase (InterPro:IPR003695)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=locus:4515102510; locus_type=protein_coding
AT1G09195.9	chr1:002969249	0.0	C/2969249-2969494,2969575-2969655,2969763-2969804,2969982-2970134,2970363-2970721,2971078-2971138	AT1G09195.9 CDS AT1G09195 ID=AT1G09195.9; Parent=AT1G09195; Name=AT1G09195.9; Note=Ppx-GppA phosphatase; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: mitochondrion%3B CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase%2C HD subdomain (InterPro:IPR006674)%2C Ppx/GppA phosphatase (InterPro:IPR003695)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=locus:4515102510; locus_type=protein_coding
AT1G09200.1	chr1:002971722	0.0	C/2971722-2972132	AT1G09200.1 CDS AT1G09200 ID=AT1G09200.1; Parent=AT1G09200; Name=AT1G09200.1; Note=Histone superfamily protein; conf_class=1; Alias=H3.1, histone 3.1; computational_description=Histone superfamily protein%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: nucleosome assembly%3B LOCATED IN: chloroplast%2C nucleosome%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164)%2C Histone-fold (InterPro:IPR009072)%2C Histone core (InterPro:IPR007125)%3B BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G10400.1)%3B Has 14599 Blast hits to 14591 proteins in 7243 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 10602%3B Fungi - 2038%3B Plants - 1256%3B Viruses - 0%3B Other Eukaryotes - 703 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12169696, PMID:14576160, PMID:15722465, PMID:15837708, PMID:16262706, PMID:16489130, PMID:16452472, PMID:16571618, PMID:16915513, PMID:17096212, PMID:18650403, PMID:18805951, PMID:18775970, PMID:18831797, PMID:23383372, PMID:24626927, locus:2195341; locus_type=protein_coding
AT1G09210.1	chr1:002973217	0.0	C/2973217-2973228,2973326-2973442,2973527-2973556,2973718-2973765,2973859-2973954,2974040-2974107,2974615-2974672,2974755-2974841,2974928-2975032,2975206-2975464,2975562-2975754,2975849-2975956,2976562-2976655	AT1G09210.1 CDS AT1G09210 ID=AT1G09210.1; Parent=AT1G09210; Name=AT1G09210.1; Note=calreticulin 1b; curator_summary=Encodes one of three Arabidopsis calreticulins.; conf_class=2; symbol=CRT1b; Alias=AtCRT1b; full_name=calreticulin 1b; computational_description=calreticulin 1b (CRT1b)%3B FUNCTIONS IN: unfolded protein binding%2C calcium ion binding%3B INVOLVED IN: response to oxidative stress%2C response to salt stress%3B LOCATED IN: mitochondrion%2C endoplasmic reticulum%2C vacuole%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Calreticulin/calnexin%2C P (InterPro:IPR009033)%2C Calreticulin/calnexin (InterPro:IPR001580)%2C Calreticulin/calnexin%2C conserved site (InterPro:IPR018124)%2C Calreticulin (InterPro:IPR009169)%2C Concanavalin A-like lectin/glucanase (InterPro:IPR008985)%3B BEST Arabidopsis thaliana protein match is: calreticulin 1a (TAIR:AT1G56340.1)%3B Has 5507 Blast hits to 3456 proteins in 438 species: Archae - 6%3B Bacteria - 291%3B Metazoa - 2217%3B Fungi - 528%3B Plants - 416%3B Viruses - 176%3B Other Eukaryotes - 1873 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12492832, PMID:12566592, PMID:12853141, PMID:14671022, PMID:14973164, PMID:15618420, PMID:14563927, PMID:15978049, PMID:16242667, PMID:16381965, PMID:16618929, PMID:16679420, PMID:17149585, PMID:18296626, PMID:18931141, PMID:20596537, PMID:21277284, PMID:21798377, locus:2195326; locus_type=protein_coding
AT1G09220.1	chr1:002977952	0.0	C/2977952-2979466	AT1G09220.1 CDS AT1G09220 ID=AT1G09220.1; Parent=AT1G09220; Name=AT1G09220.1; Note=Pentatricopeptide repeat (PPR) superfamily protein; conf_class=1; computational_description=Pentatricopeptide repeat (PPR) superfamily protein%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cytosolic ribosome%3B EXPRESSED IN: 7 plant structures%3B EXPRESSED DURING: 4 anthesis%2C F mature embryo stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: mitochondrial editing factor 21 (TAIR:AT2G20540.1)%3B Has 31696 Blast hits to 12551 proteins in 166 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 15%3B Fungi - 19%3B Plants - 31380%3B Viruses - 0%3B Other Eukaryotes - 282 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15821981, locus:2195321; locus_type=protein_coding
AT1G09230.1	chr1:002979637	0.0	C/2979637-2979723,2979877-2979942,2980022-2980080,2980211-2980298,2980605-2980778,2980851-2981012,2981258-2981398,2981541-2981622,2981778-2981987,2982090-2982161,2982376-2982563	AT1G09230.1 CDS AT1G09230 ID=AT1G09230.1; Parent=AT1G09230; Name=AT1G09230.1; Note=RNA-binding (RRM/RBD/RNP motifs) family protein; curator_summary=Encodes a U12-type spliceosomal protein that is an indispensible component of the minor spliceosome and plays a crucial role in U12 intron splicing and plant development.; conf_class=1; Alias=U11/U12-65K, U11/U12-65K; computational_description=RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B Has 908 Blast hits to 898 proteins in 138 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 655%3B Fungi - 76%3B Plants - 104%3B Viruses - 1%3B Other Eukaryotes - 66 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15987817, PMID:17028338, PMID:24606192, locus:2195311; locus_type=protein_coding
AT1G09230.2	chr1:002979637	0.0	C/2979637-2979723,2979877-2979942,2980022-2980080,2980211-2980298,2980605-2980778,2980851-2981012,2981258-2981398,2981541-2981622,2981778-2981987,2982090-2982205	AT1G09230.2 CDS AT1G09230 ID=AT1G09230.2; Parent=AT1G09230; Name=AT1G09230.2; Note=RNA-binding (RRM/RBD/RNP motifs) family protein; Alias=U11/U12-65K, U11/U12-65K; curator_summary=Encodes a U12-type spliceosomal protein that is an indispensible component of the minor spliceosome and plays a crucial role in U12 intron splicing and plant development.; computational_description=RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B Has 908 Blast hits to 898 proteins in 138 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 655%3B Fungi - 76%3B Plants - 104%3B Viruses - 1%3B Other Eukaryotes - 66 (source: NCBI BLink).; Dbxref=PMID:15987817, PMID:17028338, PMID:24606192, locus:2195311; locus_type=protein_coding
AT1G09230.3	chr1:002979862	0.0	C/2979862-2979942,2980022-2980080,2980211-2980298,2980605-2980778,2980851-2981012,2981258-2981398,2981541-2981622,2981778-2981987,2982090-2982161,2982376-2982563	AT1G09230.3 CDS AT1G09230 ID=AT1G09230.3; Parent=AT1G09230; Name=AT1G09230.3; Note=RNA-binding (RRM/RBD/RNP motifs) family protein; Alias=U11/U12-65K, U11/U12-65K; curator_summary=Encodes a U12-type spliceosomal protein that is an indispensible component of the minor spliceosome and plays a crucial role in U12 intron splicing and plant development.; computational_description=RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B Has 908 Blast hits to 898 proteins in 138 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 655%3B Fungi - 76%3B Plants - 104%3B Viruses - 1%3B Other Eukaryotes - 66 (source: NCBI BLink).; Dbxref=PMID:15987817, PMID:17028338, PMID:24606192, locus:2195311; locus_type=protein_coding
AT1TE09690	chr1:002984317	0.0	C/2984317-2984815	AT1TE09690 transposable_element AT1TE09690 ID=AT1TE09690; Name=AT1TE09690; Alias=VANDAL17
AT1G09240.1	chr1:002984950	0.0	W/2984950-2985912	AT1G09240.1 CDS AT1G09240 ID=AT1G09240.1; Parent=AT1G09240; Name=AT1G09240.1; Note=nicotianamine synthase 3; curator_summary=Encodes a nicotianamine synthase.; conf_class=1; symbol=NAS3; Alias=ATNAS3, ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 3; full_name=nicotianamine synthase 3; computational_description=nicotianamine synthase 3 (NAS3)%3B CONTAINS InterPro DOMAIN/s: Nicotianamine synthase (InterPro:IPR004298)%3B BEST Arabidopsis thaliana protein match is: nicotianamine synthase 4 (TAIR:AT1G56430.1)%3B Has 198 Blast hits to 195 proteins in 46 species: Archae - 20%3B Bacteria - 10%3B Metazoa - 0%3B Fungi - 20%3B Plants - 147%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12753585, PMID:13129917, PMID:14690510, PMID:15272001, PMID:15341629, PMID:15531708, PMID:16359384, PMID:16608451, PMID:16844841, PMID:16829591, PMID:16911220, PMID:16998091, PMID:17189325, PMID:17447913, PMID:18650403, PMID:18775970, PMID:19304929, PMID:21592396, PMID:22374397, PMID:22639605, PMID:22706286, PMID:24704865, locus:2195301; locus_type=protein_coding
AT1TE09695	chr1:002986279	0.0	C/2986279-2986347	AT1TE09695 transposable_element AT1TE09695 ID=AT1TE09695; Name=AT1TE09695; Alias=ATREP4
AT1TE09700	chr1:002986348	0.0	C/2986348-2986950	AT1TE09700 transposable_element AT1TE09700 ID=AT1TE09700; Name=AT1TE09700; Alias=ATREP2
AT1G09245.1	chr1:002986948	0.0	C/2986948-2987367	AT1G09245.1 CDS AT1G09245 ID=AT1G09245.1; Parent=AT1G09245; Name=AT1G09245.1; Note=Plant self-incompatibility protein S1 family; conf_class=1; computational_description=Plant self-incompatibility protein S1 family%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264)%3B BEST Arabidopsis thaliana protein match is: Plant self-incompatibility protein S1 family (TAIR:AT5G39493.1)%3B Has 107 Blast hits to 107 proteins in 3 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 107%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:1005716724; locus_type=protein_coding
AT1TE09705	chr1:002986951	0.0	W/2986951-2987018	AT1TE09705 transposable_element AT1TE09705 ID=AT1TE09705; Name=AT1TE09705; Alias=VANDAL8
AT1G04687.1	chr1:002987676	0.0	C/2987676-2987995	AT1G04687.1 lnc_RNA AT1G04687 ID=AT1G04687.1; Parent=AT1G04687; Name=AT1G04687.1; locus_type=long_noncoding_rna
AT1G04693.1	chr1:002987676	0.0	W/2987676-2988104	AT1G04693.1 lnc_RNA AT1G04693 ID=AT1G04693.1; Parent=AT1G04693; Name=AT1G04693.1; locus_type=long_noncoding_rna
AT1G09250.1	chr1:002989509	0.0	W/2989509-2990132	AT1G09250.1 CDS AT1G09250 ID=AT1G09250.1; Parent=AT1G09250; Name=AT1G09250.1; Note=basic helix-loop-helix (bHLH) DNA-binding superfamily protein; conf_class=1; Alias=AIF4, ATBS1 Interacting Factor 4; computational_description=basic helix-loop-helix (bHLH) DNA-binding superfamily protein%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: nucleus%2C chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors (TAIR:AT3G17100.2)%3B Has 250 Blast hits to 250 proteins in 13 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 250%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12679534, PMID:12897250, PMID:14600211, PMID:16214899, PMID:18650403, PMID:20023194, PMID:23333962, locus:2195291; locus_type=protein_coding
AT1G09260.1	chr1:002993404	0.0	W/2993404-2993820	AT1G09260.1 CDS AT1G09260 ID=AT1G09260.1; Parent=AT1G09260; Name=AT1G09260.1; Note=Chaperone DnaJ-domain superfamily protein; conf_class=9; computational_description=Chaperone DnaJ-domain superfamily protein%3B FUNCTIONS IN: unfolded protein binding%2C heat shock protein binding%3B INVOLVED IN: protein folding%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Molecular chaperone%2C heat shock protein%2C Hsp40%2C DnaJ (InterPro:IPR015609)%2C Heat shock protein DnaJ%2C N-terminal (InterPro:IPR001623)%2C Heat shock protein DnaJ (InterPro:IPR003095)%3B BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT2G25560.1)%3B Has 2956 Blast hits to 2955 proteins in 867 species: Archae - 40%3B Bacteria - 1338%3B Metazoa - 620%3B Fungi - 249%3B Plants - 426%3B Viruses - 3%3B Other Eukaryotes - 280 (source: NCBI BLink).; conf_rating=*; Dbxref=locus:2195281; locus_type=protein_coding
AT1G09270.1	chr1:002994506	0.0	W/2994506-2994736,2995147-2995243,2995345-2995436,2995537-2995668,2995893-2996078,2996227-2996390,2996638-2996716,2996801-2996929,2997202-2997329,2997455-2997833	AT1G09270.1 CDS AT1G09270 ID=AT1G09270.1; Parent=AT1G09270; Name=AT1G09270.1; Note=importin alpha isoform 4; curator_summary=Protein interacts with Agrobacterium proteins VirD2 and VirE2.; conf_class=2; symbol=IMPA-4; full_name=importin alpha isoform 4; computational_description=importin alpha isoform 4 (IMPA-4)%3B FUNCTIONS IN: protein transporter activity%2C binding%3B INVOLVED IN: intracellular protein transport%2C symbiont intracellular protein transport in host%2C host response to induction by symbiont of tumor%2C nodule or growth in host%3B LOCATED IN: nucleus%2C nuclear pore%2C cytoplasm%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Importin-alpha-like%2C importin-beta-binding domain (InterPro:IPR002652)%2C Armadillo-like helical (InterPro:IPR011989)%2C Armadillo (InterPro:IPR000225)%2C Armadillo-type fold (InterPro:IPR016024)%3B BEST Arabidopsis thaliana protein match is: importin alpha isoform 1 (TAIR:AT3G06720.2)%3B Has 4272 Blast hits to 3104 proteins in 282 species: Archae - 2%3B Bacteria - 6%3B Metazoa - 1653%3B Fungi - 615%3B Plants - 1226%3B Viruses - 0%3B Other Eukaryotes - 770 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12969426, PMID:12946625, PMID:18775970, PMID:18836040, PMID:20736450, locus:2195351; locus_type=protein_coding
AT1G09270.2	chr1:002994506	0.0	W/2994506-2994736,2995147-2995243,2995345-2995436,2995537-2995668,2995893-2996078,2996227-2996390,2996638-2996716,2996801-2996929,2997202-2997329,2997455-2997833	AT1G09270.2 CDS AT1G09270 ID=AT1G09270.2; Parent=AT1G09270; Name=AT1G09270.2; Note=importin alpha isoform 4; curator_summary=Protein interacts with Agrobacterium proteins VirD2 and VirE2.; conf_class=2; symbol=IMPA-4; full_name=importin alpha isoform 4; computational_description=importin alpha isoform 4 (IMPA-4)%3B FUNCTIONS IN: protein transporter activity%2C binding%3B INVOLVED IN: intracellular protein transport%2C symbiont intracellular protein transport in host%2C host response to induction by symbiont of tumor%2C nodule or growth in host%3B LOCATED IN: nucleus%2C nuclear pore%2C cytoplasm%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Importin-alpha-like%2C importin-beta-binding domain (InterPro:IPR002652)%2C Armadillo-like helical (InterPro:IPR011989)%2C Armadillo (InterPro:IPR000225)%2C Armadillo-type fold (InterPro:IPR016024)%3B BEST Arabidopsis thaliana protein match is: importin alpha isoform 1 (TAIR:AT3G06720.2)%3B Has 4272 Blast hits to 3104 proteins in 282 species: Archae - 2%3B Bacteria - 6%3B Metazoa - 1653%3B Fungi - 615%3B Plants - 1226%3B Viruses - 0%3B Other Eukaryotes - 770 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12969426, PMID:12946625, PMID:18775970, PMID:18836040, PMID:20736450, locus:2195351; locus_type=protein_coding
AT1G09270.3	chr1:002995162	0.0	W/2995162-2995243,2995345-2995436,2995537-2995668,2995893-2996078,2996227-2996390,2996638-2996716,2996801-2996929,2997202-2997329,2997455-2997833	AT1G09270.3 CDS AT1G09270 ID=AT1G09270.3; Parent=AT1G09270; Name=AT1G09270.3; Note=importin alpha isoform 4; curator_summary=Protein interacts with Agrobacterium proteins VirD2 and VirE2.; conf_class=2; symbol=IMPA-4; full_name=importin alpha isoform 4; computational_description=importin alpha isoform 4 (IMPA-4)%3B FUNCTIONS IN: protein transporter activity%2C binding%3B INVOLVED IN: intracellular protein transport%2C symbiont intracellular protein transport in host%2C host response to induction by symbiont of tumor%2C nodule or growth in host%3B LOCATED IN: nucleus%2C nuclear pore%2C cytoplasm%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Importin-alpha-like%2C importin-beta-binding domain (InterPro:IPR002652)%2C Armadillo-like helical (InterPro:IPR011989)%2C Armadillo (InterPro:IPR000225)%2C Armadillo-type fold (InterPro:IPR016024)%3B BEST Arabidopsis thaliana protein match is: importin alpha isoform 1 (TAIR:AT3G06720.2)%3B Has 4272 Blast hits to 3104 proteins in 282 species: Archae - 2%3B Bacteria - 6%3B Metazoa - 1653%3B Fungi - 615%3B Plants - 1226%3B Viruses - 0%3B Other Eukaryotes - 770 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12969426, PMID:12946625, PMID:18775970, PMID:18836040, PMID:20736450, locus:2195351; locus_type=protein_coding
AT1G09280.1	chr1:002998209	0.0	C/2998209-2998915,2999028-2999127,2999204-2999336,2999426-2999508,2999587-2999668,2999755-2999935,3000028-3000133,3000556-3000717,3001062-3001253	AT1G09280.1 CDS AT1G09280 ID=AT1G09280.1; Parent=AT1G09280; Name=AT1G09280.1; Note=rhodanese-like domain protein; conf_class=2; computational_description=CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763)%2C Serine hydrolase (InterPro:IPR005645)%3B BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT2G40760.1)%3B Has 5925 Blast hits to 5912 proteins in 1592 species: Archae - 0%3B Bacteria - 2946%3B Metazoa - 156%3B Fungi - 408%3B Plants - 229%3B Viruses - 0%3B Other Eukaryotes - 2186 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12492831, PMID:12482606, PMID:17408957, locus:2195286; locus_type=protein_coding
AT1G09290.1	chr1:003001682	0.0	C/3001682-3001840,3001926-3002102,3002192-3002321,3002641-3002827,3002922-3003060,3003260-3003306,3003508-3003715	AT1G09290.1 CDS AT1G09290 ID=AT1G09290.1; Parent=AT1G09290; Name=AT1G09290.1; Note=hypothetical protein; conf_class=2; computational_description=unknown protein%3B Has 73 Blast hits to 71 proteins in 26 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 5%3B Fungi - 11%3B Plants - 54%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2203033; locus_type=protein_coding
AT1G09300.1	chr1:003003981	0.0	W/3003981-3004028,3004361-3004435,3004515-3004778,3004868-3004960,3005073-3005279,3005775-3005878,3005993-3006059,3006141-3006248,3006612-3006704,3006999-3007083,3007290-3007360,3007686-3007741,3007921-3008131	AT1G09300.1 CDS AT1G09300 ID=AT1G09300.1; Parent=AT1G09300; Name=AT1G09300.1; Note=Metallopeptidase M24 family protein; conf_class=2; computational_description=Metallopeptidase M24 family protein%3B FUNCTIONS IN: metallopeptidase activity%2C manganese ion binding%2C metalloexopeptidase activity%2C aminopeptidase activity%3B INVOLVED IN: proteolysis%2C cellular process%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 18 plant structures%3B EXPRESSED DURING: 10 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase M24B%2C X-Pro dipeptidase/aminopeptidase P N-terminal (InterPro:IPR007865)%2C Peptidase M24%2C structural domain (InterPro:IPR000994)%2C Peptidase M24%2C methionine aminopeptidase (InterPro:IPR001714)%3B BEST Arabidopsis thaliana protein match is: Metallopeptidase M24 family protein (TAIR:AT4G29490.1)%3B Has 16476 Blast hits to 16448 proteins in 2755 species: Archae - 330%3B Bacteria - 11247%3B Metazoa - 589%3B Fungi - 576%3B Plants - 221%3B Viruses - 0%3B Other Eukaryotes - 3513 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12185496, PMID:18650403, locus:2203038; locus_type=protein_coding
AT1G09300.2	chr1:003004485	0.0	W/3004485-3004778,3004868-3004960,3005073-3005279,3005775-3005878,3005993-3006059,3006141-3006248,3006612-3006704,3006999-3007083,3007290-3007360,3007686-3007741,3007921-3008131	AT1G09300.2 CDS AT1G09300 ID=AT1G09300.2; Parent=AT1G09300; Name=AT1G09300.2; Note=Metallopeptidase M24 family protein; conf_class=2; computational_description=Metallopeptidase M24 family protein%3B FUNCTIONS IN: metallopeptidase activity%2C manganese ion binding%2C metalloexopeptidase activity%2C aminopeptidase activity%3B INVOLVED IN: proteolysis%2C cellular process%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 18 plant structures%3B EXPRESSED DURING: 10 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase M24B%2C X-Pro dipeptidase/aminopeptidase P N-terminal (InterPro:IPR007865)%2C Peptidase M24%2C structural domain (InterPro:IPR000994)%2C Peptidase M24%2C methionine aminopeptidase (InterPro:IPR001714)%3B BEST Arabidopsis thaliana protein match is: Metallopeptidase M24 family protein (TAIR:AT4G29490.1)%3B Has 16476 Blast hits to 16448 proteins in 2755 species: Archae - 330%3B Bacteria - 11247%3B Metazoa - 589%3B Fungi - 576%3B Plants - 221%3B Viruses - 0%3B Other Eukaryotes - 3513 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12185496, PMID:18650403, locus:2203038; locus_type=protein_coding
AT1G09310.1	chr1:003009109	0.0	W/3009109-3009648	AT1G09310.1 CDS AT1G09310 ID=AT1G09310.1; Parent=AT1G09310; Name=AT1G09310.1; Note=plant/protein (Protein of unknown function%2C DUF538); conf_class=1; computational_description=Protein of unknown function%2C DUF538%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: apoplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function%2C DUF538 (TAIR:AT1G56580.1)%3B Has 409 Blast hits to 409 proteins in 33 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 0%3B Fungi - 4%3B Plants - 403%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15352244, PMID:16400686, PMID:16648215, PMID:17163439, PMID:17828791, PMID:18650403, PMID:18684332, locus:2203043; locus_type=protein_coding
AT1G09320.1	chr1:003010270	0.0	C/3010270-3010284,3010430-3010885,3011018-3011494,3011623-3012228	AT1G09320.1 CDS AT1G09320 ID=AT1G09320.1; Parent=AT1G09320; Name=AT1G09320.1; Note=agenet domain-containing protein; conf_class=2; computational_description=agenet domain-containing protein%3B FUNCTIONS IN: RNA binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Tudor-like%2C plant (InterPro:IPR014002)%2C Agenet (InterPro:IPR008395)%3B BEST Arabidopsis thaliana protein match is: agenet domain-containing protein (TAIR:AT3G06520.1)%3B Has 769 Blast hits to 316 proteins in 28 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 13%3B Fungi - 3%3B Plants - 733%3B Viruses - 0%3B Other Eukaryotes - 20 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12575993, PMID:18775970, PMID:20736450, locus:2203018; locus_type=protein_coding
AT1G09330.1	chr1:003013003	0.0	C/3013003-3013091,3013246-3013372,3014044-3014103,3014225-3014428,3014518-3014580,3014886-3014903	AT1G09330.1 CDS AT1G09330 ID=AT1G09330.1; Parent=AT1G09330; Name=AT1G09330.1; Note=golgi apparatus membrane protein-like protein ECHIDNA protein; conf_class=2; Alias=ECH, ECHIDNA; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: integral to membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF846%2C eukaryotic (InterPro:IPR008564)%3B Has 518 Blast hits to 518 proteins in 206 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 193%3B Fungi - 145%3B Plants - 73%3B Viruses - 0%3B Other Eukaryotes - 107 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17660356, PMID:17617174, PMID:18650403, PMID:18775970, PMID:21512130, PMID:23832588, PMID:24043780, PMID:24468625, PMID:24424320, PMID:24058145, PMID:25658798, locus:2203023; locus_type=protein_coding
AT1G09330.2	chr1:003013993	0.0	C/3013993-3014103,3014225-3014428,3014518-3014580,3014886-3014903	AT1G09330.2 CDS AT1G09330 ID=AT1G09330.2; Parent=AT1G09330; Name=AT1G09330.2; Note=golgi apparatus membrane protein-like protein ECHIDNA protein; Alias=ECH, ECHIDNA; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: integral to membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF846%2C eukaryotic (InterPro:IPR008564)%3B Has 518 Blast hits to 518 proteins in 206 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 193%3B Fungi - 145%3B Plants - 73%3B Viruses - 0%3B Other Eukaryotes - 107 (source: NCBI BLink).; Dbxref=PMID:17660356, PMID:17617174, PMID:18650403, PMID:18775970, PMID:21512130, PMID:23832588, PMID:24043780, PMID:24468625, PMID:24424320, PMID:24058145, PMID:25658798, locus:2203023; locus_type=protein_coding
AT1G09340.1	chr1:003015473	0.0	W/3015473-3015574,3016035-3016169,3016248-3016334,3016458-3016548,3016660-3016714,3016816-3016876,3017045-3017266,3017408-3017524,3017677-3017766,3017859-3018035	AT1G09340.1 CDS AT1G09340 ID=AT1G09340.1; Parent=AT1G09340; Name=AT1G09340.1; Note=chloroplast RNA binding protein; curator_summary=Encodes CHLOROPLAST RNA BINDING (CRB)%2C a putative RNA-binding protein. CRB is important for the proper functioning of the chloroplast. Mutations in CRB also affects the circadian system%2C altering the expression of both oscillator and output genes.; conf_class=2; symbol=CRB; Alias=CSP41B, CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA, HIP1.3, heteroglycan-interacting protein 1.3; full_name=chloroplast RNA binding; computational_description=chloroplast RNA binding (CRB)%3B FUNCTIONS IN: coenzyme binding%2C binding%2C catalytic activity%3B INVOLVED IN: in 6 processes%3B LOCATED IN: in 10 components%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509)%2C NAD(P)-binding domain (InterPro:IPR016040)%3B BEST Arabidopsis thaliana protein match is: chloroplast stem-loop binding protein of 41 kDa (TAIR:AT3G63140.1)%3B Has 5936 Blast hits to 5936 proteins in 1402 species: Archae - 366%3B Bacteria - 3891%3B Metazoa - 108%3B Fungi - 58%3B Plants - 234%3B Viruses - 3%3B Other Eukaryotes - 1276 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12432076, PMID:14576160, PMID:16500996, PMID:16461379, PMID:16633814, PMID:16923014, PMID:16980539, PMID:17028151, PMID:17617174, PMID:17951448, PMID:18297659, PMID:18433503, PMID:18398686, PMID:18650403, PMID:18633119, PMID:18684332, PMID:19067181, PMID:20736450, PMID:21087810, PMID:22090436, PMID:22140236, PMID:23281391, PMID:25161659, locus:2203028; locus_type=protein_coding
AT1G09340.2	chr1:003015806	0.0	W/3015806-3015910,3016035-3016169,3016248-3016334,3016458-3016548,3016660-3016714,3016816-3016876,3017045-3017266,3017408-3017524,3017677-3017766,3017859-3018035	AT1G09340.2 CDS AT1G09340 ID=AT1G09340.2; Parent=AT1G09340; Name=AT1G09340.2; Note=chloroplast RNA binding protein; symbol=CRB; Alias=CSP41B, CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA, HIP1.3, heteroglycan-interacting protein 1.3; full_name=chloroplast RNA binding; curator_summary=Encodes CHLOROPLAST RNA BINDING (CRB)%2C a putative RNA-binding protein. CRB is important for the proper functioning of the chloroplast. Mutations in CRB also affects the circadian system%2C altering the expression of both oscillator and output genes.; computational_description=chloroplast RNA binding (CRB)%3B FUNCTIONS IN: coenzyme binding%2C binding%2C catalytic activity%3B INVOLVED IN: in 6 processes%3B LOCATED IN: in 10 components%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509)%2C NAD(P)-binding domain (InterPro:IPR016040)%3B BEST Arabidopsis thaliana protein match is: chloroplast stem-loop binding protein of 41 kDa (TAIR:AT3G63140.1)%3B Has 5936 Blast hits to 5936 proteins in 1402 species: Archae - 366%3B Bacteria - 3891%3B Metazoa - 108%3B Fungi - 58%3B Plants - 234%3B Viruses - 3%3B Other Eukaryotes - 1276 (source: NCBI BLink).; Dbxref=PMID:12432076, PMID:14576160, PMID:16500996, PMID:16461379, PMID:16633814, PMID:16923014, PMID:16980539, PMID:17028151, PMID:17617174, PMID:17951448, PMID:18297659, PMID:18433503, PMID:18398686, PMID:18650403, PMID:18633119, PMID:18684332, PMID:19067181, PMID:20736450, PMID:21087810, PMID:22090436, PMID:22140236, PMID:23281391, PMID:25161659, locus:2203028; locus_type=protein_coding
AT1G09350.1	chr1:003019888	0.0	W/3019888-3020193,3020284-3020607,3020761-3020912,3020992-3021214	AT1G09350.1 CDS AT1G09350 ID=AT1G09350.1; Parent=AT1G09350; Name=AT1G09350.1; Note=galactinol synthase 3; curator_summary=Predicted to encode a galactinol synthase; conf_class=1; symbol=GolS3; Alias=AtGolS3, galactinol synthase 3; full_name=galactinol synthase 3; computational_description=galactinol synthase 3 (GolS3)%3B CONTAINS InterPro DOMAIN/s: Glycosyl transferase%2C family 8 (InterPro:IPR002495)%3B BEST Arabidopsis thaliana protein match is: galactinol synthase 2 (TAIR:AT1G56600.1)%3B Has 1260 Blast hits to 1259 proteins in 288 species: Archae - 0%3B Bacteria - 98%3B Metazoa - 258%3B Fungi - 282%3B Plants - 479%3B Viruses - 73%3B Other Eukaryotes - 70 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11846875, PMID:12172015, PMID:12609047, PMID:15165189, PMID:15341633, PMID:15610345, PMID:16121258, PMID:16463051, PMID:16630346, PMID:16617101, PMID:17346352, PMID:17346263, PMID:17461790, PMID:18230142, PMID:18502973, PMID:18650403, PMID:18643985, PMID:19502356, PMID:19500304, locus:2012320; locus_type=protein_coding
AT1G09350.2	chr1:003020278	0.0	W/3020278-3020607,3020761-3020912,3020992-3021214	AT1G09350.2 CDS AT1G09350 ID=AT1G09350.2; Parent=AT1G09350; Name=AT1G09350.2; Note=galactinol synthase 3; symbol=GolS3; Alias=AtGolS3, galactinol synthase 3; full_name=galactinol synthase 3; curator_summary=Predicted to encode a galactinol synthase; computational_description=galactinol synthase 3 (GolS3)%3B CONTAINS InterPro DOMAIN/s: Glycosyl transferase%2C family 8 (InterPro:IPR002495)%3B BEST Arabidopsis thaliana protein match is: galactinol synthase 2 (TAIR:AT1G56600.1)%3B Has 1260 Blast hits to 1259 proteins in 288 species: Archae - 0%3B Bacteria - 98%3B Metazoa - 258%3B Fungi - 282%3B Plants - 479%3B Viruses - 73%3B Other Eukaryotes - 70 (source: NCBI BLink).; Dbxref=PMID:11846875, PMID:12172015, PMID:12609047, PMID:15165189, PMID:15341633, PMID:15610345, PMID:16121258, PMID:16463051, PMID:16630346, PMID:16617101, PMID:17346352, PMID:17346263, PMID:17461790, PMID:18230142, PMID:18502973, PMID:18650403, PMID:18643985, PMID:19502356, PMID:19500304, locus:2012320; locus_type=protein_coding
AT1G09360.1	chr1:003021802	0.0	W/3021802-3022368	AT1G09360.1 CDS AT1G09360 ID=AT1G09360.1; Parent=AT1G09360; Name=AT1G09360.1; Note=Plant invertase/pectin methylesterase inhibitor superfamily protein; conf_class=9; computational_description=Plant invertase/pectin methylesterase inhibitor superfamily protein%3B FUNCTIONS IN: enzyme inhibitor activity%2C pectinesterase inhibitor activity%2C pectinesterase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501)%3B BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT1G09370.1)%3B Has 29 Blast hits to 29 proteins in 6 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 29%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*; Dbxref=locus:2012360; locus_type=protein_coding
AT1TE09820	chr1:003023386	0.0	C/3023386-3024890	AT1TE09820 transposable_element AT1TE09820 ID=AT1TE09820; Name=AT1TE09820; Alias=ATREP6
AT1G09370.1	chr1:003024895	0.0	W/3024895-3025425	AT1G09370.1 CDS AT1G09370 ID=AT1G09370.1; Parent=AT1G09370; Name=AT1G09370.1; Note=Plant invertase/pectin methylesterase inhibitor superfamily protein; conf_class=1; computational_description=Plant invertase/pectin methylesterase inhibitor superfamily protein%3B FUNCTIONS IN: enzyme inhibitor activity%2C pectinesterase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: embryo%2C cotyledon%3B EXPRESSED DURING: C globular stage%3B CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501)%3B BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT1G09360.1)%3B Has 25 Blast hits to 25 proteins in 5 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 25%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16299181, PMID:20736450, locus:2012365; locus_type=protein_coding
AT1G09380.1	chr1:003026351	0.0	C/3026351-3026552,3026648-3026799,3026887-3027045,3027159-3027411,3027498-3027614,3027691-3027753,3029144-3029322	AT1G09380.1 CDS AT1G09380 ID=AT1G09380.1; Parent=AT1G09380; Name=AT1G09380.1; Note=nodulin MtN21 /EamA-like transporter family protein; curator_summary=nodulin MtN21-like transporter family protein; conf_class=2; symbol=UMAMIT25; full_name=Usually multiple acids move in and out Transporters 25; computational_description=nodulin MtN21 /EamA-like transporter family protein%3B LOCATED IN: endomembrane system%2C membrane%3B EXPRESSED IN: 15 plant structures%3B EXPRESSED DURING: 4 anthesis%2C C globular stage%2C petal differentiation and expansion stage%2C LP.08 eight leaves visible%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6%2C transmembrane (InterPro:IPR000620)%3B BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT5G07050.1)%3B Has 5897 Blast hits to 5875 proteins in 1081 species: Archae - 84%3B Bacteria - 3492%3B Metazoa - 6%3B Fungi - 4%3B Plants - 1243%3B Viruses - 0%3B Other Eukaryotes - 1068 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14722770, PMID:15235117, PMID:20736450, locus:2012255; locus_type=protein_coding
AT1G09390.1	chr1:003031264	0.0	W/3031264-3031519,3032117-3032308,3032387-3032553,3032666-3032930,3033183-3033415	AT1G09390.1 CDS AT1G09390 ID=AT1G09390.1; Parent=AT1G09390; Name=AT1G09390.1; Note=GDSL-like Lipase/Acylhydrolase superfamily protein; conf_class=2; computational_description=GDSL-like Lipase/Acylhydrolase superfamily protein%3B FUNCTIONS IN: hydrolase activity%2C acting on ester bonds%2C carboxylesterase activity%3B INVOLVED IN: glycerol biosynthetic process%2C lipid metabolic process%3B LOCATED IN: chloroplast stroma%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Lipase%2C GDSL (InterPro:IPR001087)%3B BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G56670.1)%3B Has 3339 Blast hits to 3301 proteins in 169 species: Archae - 0%3B Bacteria - 205%3B Metazoa - 0%3B Fungi - 26%3B Plants - 3101%3B Viruses - 0%3B Other Eukaryotes - 7 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14682612, PMID:17409064, locus:2012270; locus_type=protein_coding
AT1G04697.1	chr1:003031497	0.0	C/3031497-3032139	AT1G04697.1 antisense_lncRNA AT1G04697 ID=AT1G04697.1; Parent=AT1G04697; Name=AT1G04697.1; description=Natural antisense transcript overlaps with AT1G09390; Note=Natural antisense transcript overlaps with AT1G09390; locus_type=antisense_long_noncoding_rna
AT1G09400.1	chr1:003033676	0.0	C/3033676-3034193,3034276-3034434,3034519-3034649,3034725-3034865,3034968-3034993	AT1G09400.1 CDS AT1G09400 ID=AT1G09400.1; Parent=AT1G09400; Name=AT1G09400.1; Note=FMN-linked oxidoreductases superfamily protein; conf_class=4; computational_description=FMN-linked oxidoreductases superfamily protein%3B FUNCTIONS IN: oxidoreductase activity%2C FMN binding%2C catalytic activity%3B INVOLVED IN: metabolic process%3B LOCATED IN: mitochondrion%3B CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785)%2C NADH:flavin oxidoreductase/NADH oxidase%2C N-terminal (InterPro:IPR001155)%3B BEST Arabidopsis thaliana protein match is: 12-oxophytodienoate reductase 2 (TAIR:AT1G76690.1)%3B Has 13164 Blast hits to 13141 proteins in 2055 species: Archae - 127%3B Bacteria - 9794%3B Metazoa - 29%3B Fungi - 860%3B Plants - 453%3B Viruses - 0%3B Other Eukaryotes - 1901 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:23505340, locus:2012285; locus_type=protein_coding
AT1G09400.2	chr1:003033676	0.0	C/3033676-3034193,3034276-3034434,3034519-3034639	AT1G09400.2 CDS AT1G09400 ID=AT1G09400.2; Parent=AT1G09400; Name=AT1G09400.2; Note=FMN-linked oxidoreductases superfamily protein; computational_description=FMN-linked oxidoreductases superfamily protein%3B FUNCTIONS IN: oxidoreductase activity%2C FMN binding%2C catalytic activity%3B INVOLVED IN: metabolic process%3B LOCATED IN: mitochondrion%3B CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785)%2C NADH:flavin oxidoreductase/NADH oxidase%2C N-terminal (InterPro:IPR001155)%3B BEST Arabidopsis thaliana protein match is: 12-oxophytodienoate reductase 2 (TAIR:AT1G76690.1)%3B Has 13164 Blast hits to 13141 proteins in 2055 species: Archae - 127%3B Bacteria - 9794%3B Metazoa - 29%3B Fungi - 860%3B Plants - 453%3B Viruses - 0%3B Other Eukaryotes - 1901 (source: NCBI BLink).; Dbxref=PMID:23505340, locus:2012285; locus_type=protein_coding
AT1G09410.1	chr1:003035443	0.0	W/3035443-3037560	AT1G09410.1 CDS AT1G09410 ID=AT1G09410.1; Parent=AT1G09410; Name=AT1G09410.1; Note=pentatricopeptide (PPR) repeat-containing protein; conf_class=1; computational_description=pentatricopeptide (PPR) repeat-containing protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G56690.1)%3B Has 49310 Blast hits to 14061 proteins in 238 species: Archae - 0%3B Bacteria - 33%3B Metazoa - 32%3B Fungi - 36%3B Plants - 48709%3B Viruses - 0%3B Other Eukaryotes - 500 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15269332, locus:2012295; locus_type=protein_coding
AT1G09415.1	chr1:003037910	0.0	C/3037910-3038248	AT1G09415.1 CDS AT1G09415 ID=AT1G09415.1; Parent=AT1G09415; Name=AT1G09415.1; Note=NIM1-interacting 3; curator_summary=encodes a kinase that physically interacts with NPR1/NIM1; conf_class=1; symbol=NIMIN-3; full_name=NIM1-interacting 3; computational_description=NIM1-interacting 3 (NIMIN-3)%3B Has 41 Blast hits to 41 proteins in 12 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 5%3B Plants - 30%3B Viruses - 0%3B Other Eukaryotes - 6 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15749762, PMID:16632591, PMID:17189325, locus:505006111; locus_type=protein_coding
AT1G09421.1	chr1:003038631	0.0	W/3038631-3039326	AT1G09421.1 antisense_lncRNA AT1G09421 ID=AT1G09421.1; Parent=AT1G09421; index=1; curator_summary=Potential natural antisense gene%2C locus overlaps with AT1G09420; Dbxref=locus:4515102511; Name=AT1G09421.1; nochangenat-description=Natural antisense transcript overlaps with AT1G09420; Note=Natural antisense transcript overlaps with AT1G09420; locus_type=antisense_long_noncoding_rna
AT1G09420.1	chr1:003038640	0.0	C/3038640-3038877,3038971-3039171,3039247-3039449,3039550-3039670,3039790-3039824,3039924-3040032,3040113-3040318,3040450-3040564,3040649-3040743,3040841-3041088,3041175-3041379,3041614-3041715	AT1G09420.1 CDS AT1G09420 ID=AT1G09420.1; Parent=AT1G09420; Name=AT1G09420.1; Note=glucose-6-phosphate dehydrogenase 4; curator_summary=Encodes a protein similar to glucose-6-phosphate dehydrogenase but%2C based on amino acid differences in the active site and lack of activity%2C does not encode a functional G6PDH. The amino acid sequence for the consensus sequence of the G6PDH active site (DHYLGKE) differs in three places in this protein. gc exon splice site at 20574 is based on protein alignment%2C and is not confirmed experimentally.; conf_class=2; symbol=G6PD4; full_name=glucose-6-phosphate dehydrogenase 4; computational_description=glucose-6-phosphate dehydrogenase 4 (G6PD4)%3B FUNCTIONS IN: glucose-6-phosphate dehydrogenase activity%3B INVOLVED IN: oxidation reduction%2C glucose metabolic process%2C metabolic process%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 14 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Glucose-6-phosphate dehydrogenase%2C C-terminal (InterPro:IPR022675)%2C NAD(P)-binding domain (InterPro:IPR016040)%2C Glucose-6-phosphate dehydrogenase (InterPro:IPR001282)%2C Glucose-6-phosphate dehydrogenase%2C NAD-binding (InterPro:IPR022674)%3B BEST Arabidopsis thaliana protein match is: glucose-6-phosphate dehydrogenase 2 (TAIR:AT5G13110.1)%3B Has 8248 Blast hits to 8228 proteins in 2347 species: Archae - 0%3B Bacteria - 5681%3B Metazoa - 875%3B Fungi - 180%3B Plants - 375%3B Viruses - 4%3B Other Eukaryotes - 1133 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:14690509, PMID:15634201, PMID:15722468, PMID:16125897, PMID:18689444, PMID:19040112, PMID:21309870, PMID:22487254, locus:2012305; locus_type=protein_coding
AT1G09420.2	chr1:003038640	0.0	C/3038640-3038877,3038971-3039171,3039247-3039443,3039514-3039670,3039790-3039824,3039924-3040032,3040113-3040318,3040450-3040564,3040649-3040743,3040841-3041088,3041175-3041379,3041614-3041715	AT1G09420.2 CDS AT1G09420 ID=AT1G09420.2; Parent=AT1G09420; Name=AT1G09420.2; Note=glucose-6-phosphate dehydrogenase 4; curator_summary=Encodes a protein similar to glucose-6-phosphate dehydrogenase but%2C based on amino acid differences in the active site and lack of activity%2C does not encode a functional G6PDH. The amino acid sequence for the consensus sequence of the G6PDH active site (DHYLGKE) differs in three places in this protein. gc exon splice site at 20574 is based on protein alignment%2C and is not confirmed experimentally.; conf_class=4; symbol=G6PD4; full_name=glucose-6-phosphate dehydrogenase 4; computational_description=glucose-6-phosphate dehydrogenase 4 (G6PD4)%3B FUNCTIONS IN: glucose-6-phosphate dehydrogenase activity%3B INVOLVED IN: oxidation reduction%2C glucose metabolic process%2C metabolic process%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 14 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Glucose-6-phosphate dehydrogenase%2C C-terminal (InterPro:IPR022675)%2C NAD(P)-binding domain (InterPro:IPR016040)%2C Glucose-6-phosphate dehydrogenase (InterPro:IPR001282)%2C Glucose-6-phosphate dehydrogenase%2C NAD-binding (InterPro:IPR022674)%3B BEST Arabidopsis thaliana protein match is: glucose-6-phosphate dehydrogenase 2 (TAIR:AT5G13110.1)%3B Has 8248 Blast hits to 8228 proteins in 2347 species: Archae - 0%3B Bacteria - 5681%3B Metazoa - 875%3B Fungi - 180%3B Plants - 375%3B Viruses - 4%3B Other Eukaryotes - 1133 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:14576160, PMID:14690509, PMID:15634201, PMID:15722468, PMID:16125897, PMID:18689444, PMID:19040112, PMID:21309870, PMID:22487254, locus:2012305; locus_type=protein_coding
AT1G09430.1	chr1:003042135	0.0	W/3042135-3042233,3042490-3042666,3042743-3042904,3043016-3043096,3043367-3043418,3043516-3043630,3043722-3043803,3043923-3044018,3044218-3044319,3044412-3044528,3044648-3044764,3044904-3044978	AT1G09430.1 CDS AT1G09430 ID=AT1G09430.1; Parent=AT1G09430; Name=AT1G09430.1; Note=ATP-citrate lyase A-3; curator_summary=Encodes subunit A of the heteromeric enzyme ATP citrate lyase (ACL). In animals%2C ACL is encoded by a single gene%3B ACL in Arabidopsis is composed of two polypeptides%2C ACLA (encoded by 3 genes) and ACLB (encoded by 2 genes). The holoenzyme has an A(4)B(4)stoichiometry. Expression of both ACLA and ACLB but not of either of the subunits alone results in ACL activity.; conf_class=2; symbol=ACLA-3; full_name=ATP-citrate lyase A-3; computational_description=ATP-citrate lyase A-3 (ACLA-3)%3B CONTAINS InterPro DOMAIN/s: ATP-grasp fold%2C subdomain 2 (InterPro:IPR013816)%2C ATP-grasp fold%2C succinyl-CoA synthetase-type (InterPro:IPR013650)%2C Succinyl-CoA synthetase-like (InterPro:IPR016102)%3B BEST Arabidopsis thaliana protein match is: ATP-citrate lyase A-1 (TAIR:AT1G10670.4)%3B Has 5303 Blast hits to 5302 proteins in 1635 species: Archae - 133%3B Bacteria - 3235%3B Metazoa - 230%3B Fungi - 139%3B Plants - 96%3B Viruses - 0%3B Other Eukaryotes - 1470 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12169696, PMID:15608338, PMID:15531708, PMID:16608866, PMID:16805732, PMID:16972165, PMID:18650403, PMID:23505340, locus:2012310; locus_type=protein_coding
AT1G09440.1	chr1:003045513	0.0	C/3045513-3045599,3045684-3045896,3045972-3046101,3046185-3046355,3046436-3046558,3046634-3046738,3046822-3047393	AT1G09440.1 CDS AT1G09440 ID=AT1G09440.1; Parent=AT1G09440; Name=AT1G09440.1; Note=Protein kinase superfamily protein; conf_class=4; computational_description=Protein kinase superfamily protein%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 11 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G56720.3)%3B Has 119661 Blast hits to 118258 proteins in 4456 species: Archae - 117%3B Bacteria - 14198%3B Metazoa - 43932%3B Fungi - 10102%3B Plants - 33276%3B Viruses - 377%3B Other Eukaryotes - 17659 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:15194820, PMID:18723362, locus:2012325; locus_type=protein_coding
AT1G09440.2	chr1:003045513	0.0	C/3045513-3045599,3045684-3045896,3045972-3046101,3046185-3046355,3046436-3046558,3046634-3046738,3046822-3047393	AT1G09440.2 CDS AT1G09440 ID=AT1G09440.2; Parent=AT1G09440; Name=AT1G09440.2; Note=Protein kinase superfamily protein; Dbxref=PMID:15194820, PMID:18723362, locus:2012325; computational_description=Protein kinase superfamily protein%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 11 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G56720.3)%3B Has 119661 Blast hits to 118258 proteins in 4456 species: Archae - 117%3B Bacteria - 14198%3B Metazoa - 43932%3B Fungi - 10102%3B Plants - 33276%3B Viruses - 377%3B Other Eukaryotes - 17659 (source: NCBI BLink).; locus_type=protein_coding
AT1G09450.1	chr1:003049066	0.0	W/3049066-3049078,3049170-3049284,3049384-3049464,3049678-3049765,3049957-3050513,3050692-3050815,3051143-3051252,3051371-3051479,3051582-3051674,3051770-3051831,3051915-3052045,3052149-3052219,3052307-3052359,3052578-3052644,3052733-3052858	AT1G09450.1 CDS AT1G09450 ID=AT1G09450.1; Parent=AT1G09450; Name=AT1G09450.1; Note=Protein kinase superfamily protein; curator_summary=Encodes a protein kinase that phosphorylates histone H3 at Thr3 and Thr11 and plays a role in mitotic cell division.; conf_class=2; symbol=Haspin; Alias=AtHaspin; full_name=Haspin-related gene; computational_description=Protein kinase superfamily protein%3B FUNCTIONS IN: protein kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%2C N-terminal protein myristoylation%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C catalytic domain (InterPro:IPR000719)%3B Has 302 Blast hits to 302 proteins in 127 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 120%3B Fungi - 113%3B Plants - 37%3B Viruses - 0%3B Other Eukaryotes - 32 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12912986, PMID:15937229, PMID:21527018, PMID:21749502, PMID:23220945, locus:2012340; locus_type=protein_coding
AT1G09460.1	chr1:003053901	0.0	W/3053901-3054534,3054637-3054784,3054880-3055090	AT1G09460.1 CDS AT1G09460 ID=AT1G09460.1; Parent=AT1G09460; Name=AT1G09460.1; Note=Carbohydrate-binding X8 domain superfamily protein; conf_class=2; computational_description=Carbohydrate-binding X8 domain superfamily protein%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 19 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946)%3B BEST Arabidopsis thaliana protein match is: Carbohydrate-binding X8 domain superfamily protein (TAIR:AT2G30933.1)%3B Has 28400 Blast hits to 14800 proteins in 1032 species: Archae - 269%3B Bacteria - 5437%3B Metazoa - 8038%3B Fungi - 2740%3B Plants - 5953%3B Viruses - 1223%3B Other Eukaryotes - 4740 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:22589469, locus:2012355; locus_type=protein_coding
AT1G09470.1	chr1:003055391	0.0	C/3055391-3055558,3055636-3055737,3055824-3056285,3056552-3056659,3056761-3056931	AT1G09470.1 CDS AT1G09470 ID=AT1G09470.1; Parent=AT1G09470; Name=AT1G09470.1; Note=myosin heavy chain%2C cardiac protein; conf_class=2; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B EXPRESSED IN: cotyledon%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26770.1)%3B Has 55019 Blast hits to 30094 proteins in 2088 species: Archae - 730%3B Bacteria - 6553%3B Metazoa - 28961%3B Fungi - 4800%3B Plants - 2559%3B Viruses - 111%3B Other Eukaryotes - 11305 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2012370; locus_type=protein_coding
AT1G09470.2	chr1:003055391	0.0	C/3055391-3055558,3055636-3055762,3055852-3056285,3056552-3056659,3056761-3056931	AT1G09470.2 CDS AT1G09470 ID=AT1G09470.2; Parent=AT1G09470; Name=AT1G09470.2; Note=myosin heavy chain%2C cardiac protein; conf_class=6; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B EXPRESSED IN: cotyledon%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26770.1)%3B Has 55019 Blast hits to 30094 proteins in 2088 species: Archae - 730%3B Bacteria - 6553%3B Metazoa - 28961%3B Fungi - 4800%3B Plants - 2559%3B Viruses - 111%3B Other Eukaryotes - 11305 (source: NCBI BLink).; conf_rating=**; Dbxref=locus:2012370; locus_type=protein_coding
AT1G09470.3	chr1:003055391	0.0	C/3055391-3055558,3055636-3055762,3055852-3056285,3056552-3056659,3056761-3056931	AT1G09470.3 CDS AT1G09470 ID=AT1G09470.3; Parent=AT1G09470; Name=AT1G09470.3; Note=myosin heavy chain%2C cardiac protein; Dbxref=locus:2012370; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B EXPRESSED IN: cotyledon%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26770.1)%3B Has 55019 Blast hits to 30094 proteins in 2088 species: Archae - 730%3B Bacteria - 6553%3B Metazoa - 28961%3B Fungi - 4800%3B Plants - 2559%3B Viruses - 111%3B Other Eukaryotes - 11305 (source: NCBI BLink).; locus_type=protein_coding
AT1G09480.1	chr1:003057975	0.0	W/3057975-3058092,3058513-3058653,3059300-3059469,3059807-3059998,3060082-3060431,3060523-3060661	AT1G09480.1 CDS AT1G09480 ID=AT1G09480.1; Parent=AT1G09480; Name=AT1G09480.1; Note=NAD(P)-binding Rossmann-fold superfamily protein; curator_summary=similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445)%2C Vigna unguiculata (gi:1854445)%2C NOT a cinnamyl-alcohol dehydrogenase; conf_class=6; computational_description=NAD(P)-binding Rossmann-fold superfamily protein%3B FUNCTIONS IN: alcohol dehydrogenase (NAD) activity%2C cinnamyl-alcohol dehydrogenase activity%3B INVOLVED IN: lignin biosynthetic process%2C cellular metabolic process%2C metabolic process%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509)%2C NAD(P)-binding domain (InterPro:IPR016040)%3B BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT1G09490.1)%3B Has 11337 Blast hits to 11295 proteins in 1830 species: Archae - 188%3B Bacteria - 4702%3B Metazoa - 514%3B Fungi - 973%3B Plants - 2502%3B Viruses - 52%3B Other Eukaryotes - 2406 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:14745009, PMID:15878986, PMID:16258012, PMID:17337630, PMID:20736450, locus:2012250; locus_type=protein_coding
AT1G09480.2	chr1:003058536	0.0	W/3058536-3058653,3059300-3059469,3059807-3059998,3060082-3060431,3060523-3060661	AT1G09480.2 CDS AT1G09480 ID=AT1G09480.2; Parent=AT1G09480; Name=AT1G09480.2; Note=NAD(P)-binding Rossmann-fold superfamily protein; curator_summary=similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445)%2C Vigna unguiculata (gi:1854445)%2C NOT a cinnamyl-alcohol dehydrogenase; computational_description=NAD(P)-binding Rossmann-fold superfamily protein%3B FUNCTIONS IN: alcohol dehydrogenase (NAD) activity%2C cinnamyl-alcohol dehydrogenase activity%3B INVOLVED IN: lignin biosynthetic process%2C cellular metabolic process%2C metabolic process%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509)%2C NAD(P)-binding domain (InterPro:IPR016040)%3B BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT1G09490.1)%3B Has 11337 Blast hits to 11295 proteins in 1830 species: Archae - 188%3B Bacteria - 4702%3B Metazoa - 514%3B Fungi - 973%3B Plants - 2502%3B Viruses - 52%3B Other Eukaryotes - 2406 (source: NCBI BLink).; Dbxref=PMID:14745009, PMID:15878986, PMID:16258012, PMID:17337630, PMID:20736450, locus:2012250; locus_type=protein_coding
AT1G09483.1	chr1:003061248	0.0	C/3061248-3061418,3061500-3061601,3061685-3061729	AT1G09483.1 CDS AT1G09483 ID=AT1G09483.1; Parent=AT1G09483; Name=AT1G09483.1; Note=myosin heavy chain%2C cardiac protein; conf_class=6; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09470.1)%3B Has 48 Blast hits to 48 proteins in 9 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 48%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=**; Dbxref=locus:504956315; locus_type=protein_coding
AT1G09486.1	chr1:003062223	0.0	C/3062223-3063396	AT1G09486.1 pseudogenic_transcript AT1G09486 ID=AT1G09486.1; Parent=AT1G09486; Name=AT1G09486.1; Note=pseudogene; computational_description=pseudogene%2C 60S ribosomal protein L21 (RPL21B)%2C temporary automated functional assignment%3B blastp match of 67%25 identity and 2.0e-52 P-value to GP|3885884|gb|AAC78102.1||AF093630 60S ribosomal protein L21 %7BOryza sativa%7D; Dbxref=locus:504956316; locus_type=pseudogene
AT1G09490.1	chr1:003064172	0.0	W/3064172-3064289,3064705-3064874,3064956-3065147,3065226-3065575,3065677-3065815	AT1G09490.1 CDS AT1G09490 ID=AT1G09490.1; Parent=AT1G09490; Name=AT1G09490.1; Note=NAD(P)-binding Rossmann-fold superfamily protein; curator_summary=similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445)%2C Vigna unguiculata (gi:1854445)%2C NOT a cinnamyl-alcohol dehydrogenase%3B Location of EST gb:H37170%2C gb:H77227 and gb:AA605565; conf_class=2; computational_description=NAD(P)-binding Rossmann-fold superfamily protein%3B FUNCTIONS IN: alcohol dehydrogenase (NAD) activity%2C cinnamyl-alcohol dehydrogenase activity%3B INVOLVED IN: lignin biosynthetic process%2C cellular metabolic process%2C metabolic process%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509)%2C NAD(P)-binding domain (InterPro:IPR016040)%3B BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT1G09480.1)%3B Has 10413 Blast hits to 10399 proteins in 1719 species: Archae - 172%3B Bacteria - 4069%3B Metazoa - 410%3B Fungi - 939%3B Plants - 2479%3B Viruses - 15%3B Other Eukaryotes - 2329 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14745009, PMID:16258012, PMID:17254327, locus:2012265; locus_type=protein_coding
AT1G09490.2	chr1:003064680	0.0	W/3064680-3064874,3064956-3065147,3065226-3065575,3065677-3065815	AT1G09490.2 CDS AT1G09490 ID=AT1G09490.2; Parent=AT1G09490; Name=AT1G09490.2; Note=NAD(P)-binding Rossmann-fold superfamily protein; curator_summary=similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445)%2C Vigna unguiculata (gi:1854445)%2C NOT a cinnamyl-alcohol dehydrogenase%3B Location of EST gb:H37170%2C gb:H77227 and gb:AA605565; conf_class=2; computational_description=NAD(P)-binding Rossmann-fold superfamily protein%3B FUNCTIONS IN: alcohol dehydrogenase (NAD) activity%2C cinnamyl-alcohol dehydrogenase activity%3B INVOLVED IN: lignin biosynthetic process%2C cellular metabolic process%2C metabolic process%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509)%2C NAD(P)-binding domain (InterPro:IPR016040)%3B BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT1G09480.1)%3B Has 10413 Blast hits to 10399 proteins in 1719 species: Archae - 172%3B Bacteria - 4069%3B Metazoa - 410%3B Fungi - 939%3B Plants - 2479%3B Viruses - 15%3B Other Eukaryotes - 2329 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14745009, PMID:16258012, PMID:17254327, locus:2012265; locus_type=protein_coding
AT1G09500.1	chr1:003066811	0.0	W/3066811-3066928,3067341-3067513,3067617-3067808,3067891-3068240,3068340-3068484	AT1G09500.1 CDS AT1G09500 ID=AT1G09500.1; Parent=AT1G09500; Name=AT1G09500.1; Note=NAD(P)-binding Rossmann-fold superfamily protein; curator_summary=similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445)%2C Vigna unguiculata (gi:1854445)%2C NOT a cinnamyl-alcohol dehydrogenase; conf_class=2; computational_description=NAD(P)-binding Rossmann-fold superfamily protein%3B FUNCTIONS IN: alcohol dehydrogenase (NAD) activity%2C cinnamyl-alcohol dehydrogenase activity%3B INVOLVED IN: lignin biosynthetic process%2C cellular metabolic process%2C metabolic process%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 9 plant structures%3B EXPRESSED DURING: LP.06 six leaves visible%2C LP.04 four leaves visible%2C 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509)%2C NAD(P)-binding domain (InterPro:IPR016040)%3B BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT1G09510.1)%3B Has 9627 Blast hits to 9614 proteins in 1666 species: Archae - 148%3B Bacteria - 3563%3B Metazoa - 355%3B Fungi - 930%3B Plants - 2402%3B Viruses - 50%3B Other Eukaryotes - 2179 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12805589, PMID:14551330, PMID:14617064, PMID:14745009, PMID:15448178, PMID:15878986, PMID:16258017, PMID:16262716, PMID:16553893, PMID:16630346, PMID:16608451, PMID:16603661, PMID:16998091, PMID:16963526, PMID:18650403, PMID:18923020, PMID:20736450, locus:2012280; locus_type=protein_coding
AT1G09500.3	chr1:003066811	0.0	W/3066811-3066928,3067341-3067513,3067617-3067808,3067891-3068244	AT1G09500.3 CDS AT1G09500 ID=AT1G09500.3; Parent=AT1G09500; Name=AT1G09500.3; Note=NAD(P)-binding Rossmann-fold superfamily protein; curator_summary=similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445)%2C Vigna unguiculata (gi:1854445)%2C NOT a cinnamyl-alcohol dehydrogenase; conf_class=2; computational_description=NAD(P)-binding Rossmann-fold superfamily protein%3B FUNCTIONS IN: alcohol dehydrogenase (NAD) activity%2C cinnamyl-alcohol dehydrogenase activity%3B INVOLVED IN: lignin biosynthetic process%2C cellular metabolic process%2C metabolic process%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 9 plant structures%3B EXPRESSED DURING: LP.06 six leaves visible%2C LP.04 four leaves visible%2C 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509)%2C NAD(P)-binding domain (InterPro:IPR016040)%3B BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT1G09510.1)%3B Has 9627 Blast hits to 9614 proteins in 1666 species: Archae - 148%3B Bacteria - 3563%3B Metazoa - 355%3B Fungi - 930%3B Plants - 2402%3B Viruses - 50%3B Other Eukaryotes - 2179 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12805589, PMID:14551330, PMID:14617064, PMID:14745009, PMID:15448178, PMID:15878986, PMID:16258017, PMID:16262716, PMID:16553893, PMID:16630346, PMID:16608451, PMID:16603661, PMID:16998091, PMID:16963526, PMID:18650403, PMID:18923020, PMID:20736450, locus:2012280; locus_type=protein_coding
AT1G09500.2	chr1:003067325	0.0	W/3067325-3067513,3067617-3067808,3067891-3068240,3068340-3068484	AT1G09500.2 CDS AT1G09500 ID=AT1G09500.2; Parent=AT1G09500; Name=AT1G09500.2; Note=NAD(P)-binding Rossmann-fold superfamily protein; curator_summary=similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445)%2C Vigna unguiculata (gi:1854445)%2C NOT a cinnamyl-alcohol dehydrogenase; conf_class=2; computational_description=NAD(P)-binding Rossmann-fold superfamily protein%3B FUNCTIONS IN: alcohol dehydrogenase (NAD) activity%2C cinnamyl-alcohol dehydrogenase activity%3B INVOLVED IN: lignin biosynthetic process%2C cellular metabolic process%2C metabolic process%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 9 plant structures%3B EXPRESSED DURING: LP.06 six leaves visible%2C LP.04 four leaves visible%2C 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509)%2C NAD(P)-binding domain (InterPro:IPR016040)%3B BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT1G09510.1)%3B Has 9627 Blast hits to 9614 proteins in 1666 species: Archae - 148%3B Bacteria - 3563%3B Metazoa - 355%3B Fungi - 930%3B Plants - 2402%3B Viruses - 50%3B Other Eukaryotes - 2179 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12805589, PMID:14551330, PMID:14617064, PMID:14745009, PMID:15448178, PMID:15878986, PMID:16258017, PMID:16262716, PMID:16553893, PMID:16630346, PMID:16608451, PMID:16603661, PMID:16998091, PMID:16963526, PMID:18650403, PMID:18923020, PMID:20736450, locus:2012280; locus_type=protein_coding
AT1TE09960	chr1:003068469	0.0	W/3068469-3069234	AT1TE09960 transposable_element AT1TE09960 ID=AT1TE09960; Name=AT1TE09960; Alias=ATREP4
AT1G09510.1	chr1:003069396	0.0	W/3069396-3069513,3069629-3069798,3069953-3070144,3070230-3070579,3070674-3070812	AT1G09510.1 CDS AT1G09510 ID=AT1G09510.1; Parent=AT1G09510; Name=AT1G09510.1; Note=NAD(P)-binding Rossmann-fold superfamily protein; curator_summary=similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445)%2C Vigna unguiculata (gi:1854445)%2C NOT a cinnamyl-alcohol dehydrogenase; conf_class=1; computational_description=NAD(P)-binding Rossmann-fold superfamily protein%3B FUNCTIONS IN: alcohol dehydrogenase (NAD) activity%2C cinnamyl-alcohol dehydrogenase activity%3B INVOLVED IN: lignin biosynthetic process%2C cellular metabolic process%2C metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 8 plant structures%3B EXPRESSED DURING: LP.04 four leaves visible%2C 4 anthesis%2C C globular stage%2C F mature embryo stage%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509)%2C NAD(P)-binding domain (InterPro:IPR016040)%3B BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT1G09500.1)%3B Has 11399 Blast hits to 11383 proteins in 1876 species: Archae - 216%3B Bacteria - 4771%3B Metazoa - 368%3B Fungi - 952%3B Plants - 2526%3B Viruses - 56%3B Other Eukaryotes - 2510 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14745009, locus:2012315; locus_type=protein_coding
AT1G09520.1	chr1:003071248	0.0	C/3071248-3072030	AT1G09520.1 CDS AT1G09520 ID=AT1G09520.1; Parent=AT1G09520; Name=AT1G09520.1; Note=hypothetical protein; conf_class=1; computational_description=LOCATED IN: chloroplast%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C PHD-type%2C conserved site (InterPro:IPR019786)%3B BEST Arabidopsis thaliana protein match is: PHD finger family protein (TAIR:AT3G17460.1)%3B Has 56 Blast hits to 56 proteins in 17 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 0%3B Fungi - 4%3B Plants - 46%3B Viruses - 0%3B Other Eukaryotes - 4 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14576160, locus:2012330; locus_type=protein_coding
AT1TE09970	chr1:003073227	0.0	C/3073227-3073311,3073624-3075036	AT1TE09970 transposable_element AT1TE09970 ID=AT1TE09970; Name=AT1TE09970; Alias=ATREP3
AT1TE09975	chr1:003073312	0.0	W/3073312-3073623	AT1TE09975 transposable_element AT1TE09975 ID=AT1TE09975; Name=AT1TE09975; Alias=ATHATN7
AT1TE09980	chr1:003075051	0.0	C/3075051-3075419	AT1TE09980 transposable_element AT1TE09980 ID=AT1TE09980; Name=AT1TE09980; Alias=ATREP10B
AT1G09530.1	chr1:003077216	0.0	W/3077216-3077286,3077378-3078257,3078346-3078453,3078545-3078610,3078843-3078908,3078984-3079367	AT1G09530.1 CDS AT1G09530 ID=AT1G09530.1; Parent=AT1G09530; Name=AT1G09530.1; Note=phytochrome interacting factor 3; curator_summary=Transcription factor interacting with photoreceptors phyA and phyB. Forms a ternary complex in vitro with G-box element of the promoters of LHY%2C CCA1. Acts as a negative regulator of phyB signalling. It degrades rapidly after irradiation of dark grown seedlings in a process controlled by phytochromes. Does not play a significant role in controlling light input and function of the circadian clockwork. Binds to G- and E-boxes%2C but not to other ACEs. Binds to anthocyanin biosynthetic genes in a light- and HY5-independent fashion. PIF3 function as a transcriptional activator can be functionally and mechanistically separated from its role in repression of PhyB mediated processes.; conf_class=2; symbol=PIF3; Alias=PAP3, PHYTOCHROME-ASSOCIATED PROTEIN 3, POC1, PHOTOCURRENT 1; full_name=phytochrome interacting factor 3; computational_description=phytochrome interacting factor 3 (PIF3)%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: phytochrome interacting factor 3-like 1 (TAIR:AT2G46970.1)%3B Has 4326 Blast hits to 4310 proteins in 315 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 732%3B Fungi - 183%3B Plants - 3377%3B Viruses - 7%3B Other Eukaryotes - 25 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:12679534, PMID:15486102, PMID:14508006, PMID:17319847, PMID:19286967, PMID:16885032, PMID:18564962, PMID:18728185, PMID:19165330, PMID:19380736, PMID:19380720, PMID:19920208, PMID:19965572, PMID:20605855, PMID:19062289, PMID:20844019, PMID:19619162, PMID:21478445, PMID:21562334, PMID:21220341, PMID:21928113, PMID:22006939, PMID:22108407, PMID:22303234, PMID:22529386, PMID:22499182, PMID:22492120, PMID:22631228, PMID:22582101, PMID:22679494, PMID:22818915, PMID:22895253, PMID:23209113, PMID:23382695, PMID:23548744, PMID:22451940, PMID:22849408, PMID:23711731, PMID:23645630, PMID:24157606, PMID:23903316, PMID:24420574, PMID:24599595, PMID:24769533, PMID:23746445, PMID:24982146, PMID:25296857, PMID:25516603, PMID:25711503, locus:2012345; locus_type=protein_coding
AT1G09530.2	chr1:003077216	0.0	W/3077216-3077286,3077378-3078257,3078346-3078453,3078545-3078610,3078843-3078908,3078984-3079367	AT1G09530.2 CDS AT1G09530 ID=AT1G09530.2; Parent=AT1G09530; Name=AT1G09530.2; Note=phytochrome interacting factor 3; curator_summary=Transcription factor interacting with photoreceptors phyA and phyB. Forms a ternary complex in vitro with G-box element of the promoters of LHY%2C CCA1. Acts as a negative regulator of phyB signalling. It degrades rapidly after irradiation of dark grown seedlings in a process controlled by phytochromes. Does not play a significant role in controlling light input and function of the circadian clockwork. Binds to G- and E-boxes%2C but not to other ACEs. Binds to anthocyanin biosynthetic genes in a light- and HY5-independent fashion. PIF3 function as a transcriptional activator can be functionally and mechanistically separated from its role in repression of PhyB mediated processes.; conf_class=2; symbol=PIF3; Alias=PAP3, PHYTOCHROME-ASSOCIATED PROTEIN 3, POC1, PHOTOCURRENT 1; full_name=phytochrome interacting factor 3; computational_description=phytochrome interacting factor 3 (PIF3)%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: phytochrome interacting factor 3-like 1 (TAIR:AT2G46970.1)%3B Has 4326 Blast hits to 4310 proteins in 315 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 732%3B Fungi - 183%3B Plants - 3377%3B Viruses - 7%3B Other Eukaryotes - 25 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:12679534, PMID:15486102, PMID:14508006, PMID:17319847, PMID:19286967, PMID:16885032, PMID:18564962, PMID:18728185, PMID:19165330, PMID:19380736, PMID:19380720, PMID:19920208, PMID:19965572, PMID:20605855, PMID:19062289, PMID:20844019, PMID:19619162, PMID:21478445, PMID:21562334, PMID:21220341, PMID:21928113, PMID:22006939, PMID:22108407, PMID:22303234, PMID:22529386, PMID:22499182, PMID:22492120, PMID:22631228, PMID:22582101, PMID:22679494, PMID:22818915, PMID:22895253, PMID:23209113, PMID:23382695, PMID:23548744, PMID:22451940, PMID:22849408, PMID:23711731, PMID:23645630, PMID:24157606, PMID:23903316, PMID:24420574, PMID:24599595, PMID:24769533, PMID:23746445, PMID:24982146, PMID:25296857, PMID:25516603, PMID:25711503, locus:2012345; locus_type=protein_coding
AT1G09530.3	chr1:003077216	0.0	W/3077216-3077286,3077378-3078257,3078346-3078453,3078545-3078610,3078843-3078908,3078984-3079367	AT1G09530.3 CDS AT1G09530 ID=AT1G09530.3; Parent=AT1G09530; Name=AT1G09530.3; Note=phytochrome interacting factor 3; symbol=PIF3; Alias=PAP3, PHYTOCHROME-ASSOCIATED PROTEIN 3, POC1, PHOTOCURRENT 1; full_name=phytochrome interacting factor 3; Dbxref=PMID:11118137, PMID:12679534, PMID:15486102, PMID:14508006, PMID:17319847, PMID:19286967, PMID:16885032, PMID:18564962, PMID:18728185, PMID:19165330, PMID:19380736, PMID:19380720, PMID:19920208, PMID:19965572, PMID:20605855, PMID:19062289, PMID:20844019, PMID:19619162, PMID:21478445, PMID:21562334, PMID:21220341, PMID:21928113, PMID:22006939, PMID:22108407, PMID:22303234, PMID:22529386, PMID:22499182, PMID:22492120, PMID:22631228, PMID:22582101, PMID:22679494, PMID:22818915, PMID:22895253, PMID:23209113, PMID:23382695, PMID:23548744, PMID:22451940, PMID:22849408, PMID:23711731, PMID:23645630, PMID:24157606, PMID:23903316, PMID:24420574, PMID:24599595, PMID:24769533, PMID:23746445, PMID:24982146, PMID:25296857, PMID:25516603, PMID:25711503, locus:2012345; curator_summary=Transcription factor interacting with photoreceptors phyA and phyB. Forms a ternary complex in vitro with G-box element of the promoters of LHY%2C CCA1. Acts as a negative regulator of phyB signalling. It degrades rapidly after irradiation of dark grown seedlings in a process controlled by phytochromes. Does not play a significant role in controlling light input and function of the circadian clockwork. Binds to G- and E-boxes%2C but not to other ACEs. Binds to anthocyanin biosynthetic genes in a light- and HY5-independent fashion. PIF3 function as a transcriptional activator can be functionally and mechanistically separated from its role in repression of PhyB mediated processes.; computational_description=phytochrome interacting factor 3 (PIF3)%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: phytochrome interacting factor 3-like 1 (TAIR:AT2G46970.1)%3B Has 4326 Blast hits to 4310 proteins in 315 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 732%3B Fungi - 183%3B Plants - 3377%3B Viruses - 7%3B Other Eukaryotes - 25 (source: NCBI BLink).; locus_type=protein_coding
AT1G09530.4	chr1:003077216	0.0	W/3077216-3077286,3077378-3078257,3078346-3078453,3078545-3078610,3078843-3078908,3078984-3079367	AT1G09530.4 CDS AT1G09530 ID=AT1G09530.4; Parent=AT1G09530; Name=AT1G09530.4; Note=phytochrome interacting factor 3; symbol=PIF3; Alias=PAP3, PHYTOCHROME-ASSOCIATED PROTEIN 3, POC1, PHOTOCURRENT 1; full_name=phytochrome interacting factor 3; Dbxref=PMID:11118137, PMID:12679534, PMID:15486102, PMID:14508006, PMID:17319847, PMID:19286967, PMID:16885032, PMID:18564962, PMID:18728185, PMID:19165330, PMID:19380736, PMID:19380720, PMID:19920208, PMID:19965572, PMID:20605855, PMID:19062289, PMID:20844019, PMID:19619162, PMID:21478445, PMID:21562334, PMID:21220341, PMID:21928113, PMID:22006939, PMID:22108407, PMID:22303234, PMID:22529386, PMID:22499182, PMID:22492120, PMID:22631228, PMID:22582101, PMID:22679494, PMID:22818915, PMID:22895253, PMID:23209113, PMID:23382695, PMID:23548744, PMID:22451940, PMID:22849408, PMID:23711731, PMID:23645630, PMID:24157606, PMID:23903316, PMID:24420574, PMID:24599595, PMID:24769533, PMID:23746445, PMID:24982146, PMID:25296857, PMID:25516603, PMID:25711503, locus:2012345; curator_summary=Transcription factor interacting with photoreceptors phyA and phyB. Forms a ternary complex in vitro with G-box element of the promoters of LHY%2C CCA1. Acts as a negative regulator of phyB signalling. It degrades rapidly after irradiation of dark grown seedlings in a process controlled by phytochromes. Does not play a significant role in controlling light input and function of the circadian clockwork. Binds to G- and E-boxes%2C but not to other ACEs. Binds to anthocyanin biosynthetic genes in a light- and HY5-independent fashion. PIF3 function as a transcriptional activator can be functionally and mechanistically separated from its role in repression of PhyB mediated processes.; computational_description=phytochrome interacting factor 3 (PIF3)%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: phytochrome interacting factor 3-like 1 (TAIR:AT2G46970.1)%3B Has 4326 Blast hits to 4310 proteins in 315 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 732%3B Fungi - 183%3B Plants - 3377%3B Viruses - 7%3B Other Eukaryotes - 25 (source: NCBI BLink).; locus_type=protein_coding
AT1G09530.5	chr1:003077216	0.0	W/3077216-3077286,3077378-3078257,3078346-3078453,3078545-3078610,3078843-3078908,3078984-3079367	AT1G09530.5 CDS AT1G09530 ID=AT1G09530.5; Parent=AT1G09530; Name=AT1G09530.5; Note=phytochrome interacting factor 3; symbol=PIF3; Alias=PAP3, PHYTOCHROME-ASSOCIATED PROTEIN 3, POC1, PHOTOCURRENT 1; full_name=phytochrome interacting factor 3; Dbxref=PMID:11118137, PMID:12679534, PMID:15486102, PMID:14508006, PMID:17319847, PMID:19286967, PMID:16885032, PMID:18564962, PMID:18728185, PMID:19165330, PMID:19380736, PMID:19380720, PMID:19920208, PMID:19965572, PMID:20605855, PMID:19062289, PMID:20844019, PMID:19619162, PMID:21478445, PMID:21562334, PMID:21220341, PMID:21928113, PMID:22006939, PMID:22108407, PMID:22303234, PMID:22529386, PMID:22499182, PMID:22492120, PMID:22631228, PMID:22582101, PMID:22679494, PMID:22818915, PMID:22895253, PMID:23209113, PMID:23382695, PMID:23548744, PMID:22451940, PMID:22849408, PMID:23711731, PMID:23645630, PMID:24157606, PMID:23903316, PMID:24420574, PMID:24599595, PMID:24769533, PMID:23746445, PMID:24982146, PMID:25296857, PMID:25516603, PMID:25711503, locus:2012345; curator_summary=Transcription factor interacting with photoreceptors phyA and phyB. Forms a ternary complex in vitro with G-box element of the promoters of LHY%2C CCA1. Acts as a negative regulator of phyB signalling. It degrades rapidly after irradiation of dark grown seedlings in a process controlled by phytochromes. Does not play a significant role in controlling light input and function of the circadian clockwork. Binds to G- and E-boxes%2C but not to other ACEs. Binds to anthocyanin biosynthetic genes in a light- and HY5-independent fashion. PIF3 function as a transcriptional activator can be functionally and mechanistically separated from its role in repression of PhyB mediated processes.; computational_description=phytochrome interacting factor 3 (PIF3)%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: phytochrome interacting factor 3-like 1 (TAIR:AT2G46970.1)%3B Has 4326 Blast hits to 4310 proteins in 315 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 732%3B Fungi - 183%3B Plants - 3377%3B Viruses - 7%3B Other Eukaryotes - 25 (source: NCBI BLink).; locus_type=protein_coding
AT1G09530.6	chr1:003077216	0.0	W/3077216-3077286,3077378-3078257,3078346-3078453,3078545-3078610,3078843-3078908,3078984-3079367	AT1G09530.6 CDS AT1G09530 ID=AT1G09530.6; Parent=AT1G09530; Name=AT1G09530.6; Note=phytochrome interacting factor 3; symbol=PIF3; Alias=PAP3, PHYTOCHROME-ASSOCIATED PROTEIN 3, POC1, PHOTOCURRENT 1; full_name=phytochrome interacting factor 3; Dbxref=PMID:11118137, PMID:12679534, PMID:15486102, PMID:14508006, PMID:17319847, PMID:19286967, PMID:16885032, PMID:18564962, PMID:18728185, PMID:19165330, PMID:19380736, PMID:19380720, PMID:19920208, PMID:19965572, PMID:20605855, PMID:19062289, PMID:20844019, PMID:19619162, PMID:21478445, PMID:21562334, PMID:21220341, PMID:21928113, PMID:22006939, PMID:22108407, PMID:22303234, PMID:22529386, PMID:22499182, PMID:22492120, PMID:22631228, PMID:22582101, PMID:22679494, PMID:22818915, PMID:22895253, PMID:23209113, PMID:23382695, PMID:23548744, PMID:22451940, PMID:22849408, PMID:23711731, PMID:23645630, PMID:24157606, PMID:23903316, PMID:24420574, PMID:24599595, PMID:24769533, PMID:23746445, PMID:24982146, PMID:25296857, PMID:25516603, PMID:25711503, locus:2012345; curator_summary=Transcription factor interacting with photoreceptors phyA and phyB. Forms a ternary complex in vitro with G-box element of the promoters of LHY%2C CCA1. Acts as a negative regulator of phyB signalling. It degrades rapidly after irradiation of dark grown seedlings in a process controlled by phytochromes. Does not play a significant role in controlling light input and function of the circadian clockwork. Binds to G- and E-boxes%2C but not to other ACEs. Binds to anthocyanin biosynthetic genes in a light- and HY5-independent fashion. PIF3 function as a transcriptional activator can be functionally and mechanistically separated from its role in repression of PhyB mediated processes.; computational_description=phytochrome interacting factor 3 (PIF3)%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: phytochrome interacting factor 3-like 1 (TAIR:AT2G46970.1)%3B Has 4326 Blast hits to 4310 proteins in 315 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 732%3B Fungi - 183%3B Plants - 3377%3B Viruses - 7%3B Other Eukaryotes - 25 (source: NCBI BLink).; locus_type=protein_coding
AT1G04703.1	chr1:003083820	0.0	W/3083820-3084222	AT1G04703.1 lnc_RNA AT1G04703 ID=AT1G04703.1; Parent=AT1G04703; Name=AT1G04703.1; locus_type=long_noncoding_rna
AT1G09540.1	chr1:003086333	0.0	W/3086333-3086465,3086546-3086675,3086852-3087689	AT1G09540.1 CDS AT1G09540 ID=AT1G09540.1; Parent=AT1G09540; Name=AT1G09540.1; Note=myb domain protein 61; curator_summary=Encodes putative transcription factor. Mutants lack of mucilage extrusion from the seeds during imbibition. Reduced quantities of mucilage are deposited during the development of the seed coat epidermis in myb61 mutants. Expressed in guard cells%2Closs of function mutations show an increase in stomatal pore opening suggesting a role in ABA independent regulation of stomatal pore size.; conf_class=2; symbol=MYB61; Alias=ATMYB61, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61; full_name=myb domain protein 61; computational_description=myb domain protein 61 (MYB61)%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%2C Homeodomain-related (InterPro:IPR012287)%2C Myb transcription factor (InterPro:IPR015495)%3B BEST Arabidopsis thaliana protein match is: myb domain protein 50 (TAIR:AT1G57560.1)%3B Has 8976 Blast hits to 8269 proteins in 475 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 766%3B Fungi - 514%3B Plants - 5880%3B Viruses - 4%3B Other Eukaryotes - 1812 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:11597504, PMID:16005292, PMID:16463103, PMID:19401413, PMID:22589469, PMID:22708996, PMID:23741471, PMID:25658798, locus:2012375; locus_type=protein_coding
AT1G09550.1	chr1:003089733	0.0	C/3089733-3089792,3089883-3090028,3090354-3090456,3090545-3090622,3090707-3090760,3090847-3090907,3090994-3091118,3091224-3091310,3091401-3091474,3091575-3091704,3091805-3091887,3092089-3092254	AT1G09550.1 CDS AT1G09550 ID=AT1G09550.1; Parent=AT1G09550; Name=AT1G09550.1; Note=Pectinacetylesterase family protein; conf_class=3; computational_description=Pectinacetylesterase family protein%3B FUNCTIONS IN: carboxylesterase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: Pectinacetylesterase (InterPro:IPR004963)%3B BEST Arabidopsis thaliana protein match is: Pectinacetylesterase family protein (TAIR:AT1G57590.1)%3B Has 515 Blast hits to 510 proteins in 88 species: Archae - 0%3B Bacteria - 30%3B Metazoa - 114%3B Fungi - 0%3B Plants - 292%3B Viruses - 0%3B Other Eukaryotes - 79 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2012245; locus_type=protein_coding
AT1TE10030	chr1:003090084	0.0	W/3090084-3090272	AT1TE10030 transposable_element AT1TE10030 ID=AT1TE10030; Name=AT1TE10030; Alias=ATCOPIA17
AT1G09560.1	chr1:003093896	0.0	W/3093896-3094010,3094095-3094639	AT1G09560.1 CDS AT1G09560 ID=AT1G09560.1; Parent=AT1G09560; Name=AT1G09560.1; Note=germin-like protein 5; curator_summary=Encodes a plasodesmata-located protein involved in regulating primary root growth by controlling phloem-mediated allocation of resources between the primary and lateral root meristems.; conf_class=2; symbol=GLP5; Alias=PDGLP1, PLASMODESMAL GERMIN-LIKE PROTEIN 1; full_name=germin-like protein 5; computational_description=germin-like protein 5 (GLP5)%3B FUNCTIONS IN: manganese ion binding%2C nutrient reservoir activity%3B INVOLVED IN: response to cold%3B LOCATED IN: cell wall%2C nucleus%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Cupin%2C RmlC-type (InterPro:IPR011051)%2C Cupin 1 (InterPro:IPR006045)%2C Germin (InterPro:IPR001929)%2C RmlC-like jelly roll fold (InterPro:IPR014710)%2C Germin%2C manganese binding site (InterPro:IPR019780)%3B BEST Arabidopsis thaliana protein match is: germin-like protein 10 (TAIR:AT3G62020.1)%3B Has 1766 Blast hits to 1756 proteins in 200 species: Archae - 0%3B Bacteria - 219%3B Metazoa - 1%3B Fungi - 67%3B Plants - 1458%3B Viruses - 0%3B Other Eukaryotes - 21 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12169696, PMID:14576160, PMID:14617066, PMID:14595688, PMID:15272873, PMID:15235117, PMID:16911220, PMID:16998091, PMID:17335514, PMID:18650403, PMID:18796151, PMID:20736450, PMID:22960910, PMID:25366567, locus:2012260; locus_type=protein_coding
AT1G09570.1	chr1:003095498	0.0	C/3095498-3095699,3095782-3096072,3096143-3096959,3097158-3099216	AT1G09570.1 CDS AT1G09570 ID=AT1G09570.1; Parent=AT1G09570; Name=AT1G09570.1; Note=phytochrome A; curator_summary=Light-labile cytoplasmic red/far-red light photoreceptor involved in the regulation of photomorphogenesis. It exists in two inter-convertible forms: Pr and Pfr (active) and functions as a dimer.The N terminus carries a single tetrapyrrole chromophore%2C and the C terminus is involved in dimerization. It is the sole photoreceptor mediating the FR high irradiance response (HIR). Major regulator in red-light induction of phototropic enhancement. Involved in the regulation of de-etiolation. Involved in gravitropism and phototropism. Requires FHY1 for nuclear accumulation.; conf_class=2; symbol=PHYA; Alias=FHY2, FAR RED ELONGATED HYPOCOTYL 2, FRE1, FAR RED ELONGATED 1, HY8, ELONGATED HYPOCOTYL 8; full_name=phytochrome A; computational_description=phytochrome A (PHYA)%3B CONTAINS InterPro DOMAIN/s: Phytochrome%2C central region (InterPro:IPR013515)%2C Signal transduction histidine kinase%2C core (InterPro:IPR005467)%2C PAS fold (InterPro:IPR013767)%2C PAS (InterPro:IPR000014)%2C Phytochrome chromophore attachment domain (InterPro:IPR016132)%2C ATPase-like%2C ATP-binding domain (InterPro:IPR003594)%2C PAS fold-2 (InterPro:IPR013654)%2C Phytochrome A/B/C/D/E (InterPro:IPR012129)%2C Phytochrome (InterPro:IPR001294)%2C Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain (InterPro:IPR003661)%2C Phytochrome chromophore binding site (InterPro:IPR013516)%2C GAF (InterPro:IPR003018)%3B BEST Arabidopsis thaliana protein match is: phytochrome C (TAIR:AT5G35840.1)%3B Has 30353 Blast hits to 29854 proteins in 3804 species: Archae - 337%3B Bacteria - 24139%3B Metazoa - 4%3B Fungi - 596%3B Plants - 4116%3B Viruses - 7%3B Other Eukaryotes - 1154 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10985392, PMID:10982420, PMID:10944157, PMID:10929116, PMID:10921909, PMID:10908878, PMID:10899984, PMID:10824602, PMID:10817761, PMID:10806240, PMID:10792828, PMID:10760243, PMID:10759510, PMID:10750908, PMID:10734217, PMID:10649883, PMID:10631258, PMID:10631245, PMID:10611382, PMID:10594107, PMID:10571889, PMID:10571885, PMID:10570212, PMID:10524631, PMID:10517849, PMID:10449589, PMID:10444599, PMID:10417700, PMID:10379648, PMID:10348744, PMID:10333589, PMID:10205059, PMID:10198109, PMID:9951735, PMID:9881166, PMID:9881161, PMID:9845368, PMID:9839465, PMID:9822379, PMID:9800208, PMID:9778848, PMID:9744096, PMID:9744095, PMID:9733523, PMID:9733522, PMID:9724694, PMID:9701582, PMID:9681030, PMID:9680978, PMID:9651577, PMID:9634578, PMID:9611171, PMID:9536072, PMID:9477570, PMID:9540220, PMID:9491613, PMID:9418049, PMID:9414562, PMID:9368413, PMID:9351250, PMID:9351247, PMID:9306692, PMID:9276958, PMID:9252112, PMID:9212468, PMID:9193095, PMID:9144963, PMID:9112768, PMID:9107032, PMID:9085579, PMID:9011096, PMID:9011093, PMID:9011090, PMID:8938405, PMID:8893541, PMID:8865668, PMID:8843950, PMID:8755615, PMID:8633007, PMID:8624438, PMID:8818290, PMID:8587979, PMID:8718628, PMID:8616214, PMID:8577852, PMID:8564296, PMID:7567981, PMID:8589627, PMID:7659750, PMID:7630933, PMID:7757114, PMID:7716243, PMID:7539307, PMID:8547813, PMID:7767236, PMID:7991704, PMID:7881072, PMID:8049367, PMID:8180501, PMID:8016219, PMID:8400877, PMID:8364355, PMID:8439743, PMID:1536928, PMID:2005872, PMID:2606345, PMID:11090209, PMID:11089975, PMID:11069292, PMID:11156608, PMID:11115889, PMID:11581165, PMID:11711433, PMID:11706180, PMID:11684663, PMID:11788763, PMID:11760010, PMID:11752385, PMID:11752374, PMID:11743124, PMID:11743105, PMID:11726931, PMID:11883605, PMID:11889039, PMID:11607244, PMID:11161059, PMID:11299375, PMID:11493548, PMID:11319034, PMID:11260499, PMID:11549758, PMID:11553757, PMID:11481498, PMID:11449056, PMID:11461903, PMID:11402195, PMID:11402206, PMID:11402210, PMID:11421077, PMID:11930018, PMID:12006496, PMID:12061902, PMID:12119377, PMID:12119373, PMID:12114567, PMID:12100485, PMID:12172837, PMID:12148528, PMID:12324588, PMID:12244439, PMID:12239570, PMID:12232194, PMID:12232154, PMID:12232088, PMID:12231818, PMID:12228380, PMID:12226524, PMID:12226523, PMID:12226519, PMID:12226195, PMID:12220265, PMID:12472688, PMID:12468726, PMID:10995393, PMID:12586894, PMID:12578985, PMID:12548286, PMID:12644690, PMID:12711229, PMID:12694592, PMID:12694283, PMID:12753585, PMID:11722775, PMID:11726703, PMID:12826621, PMID:12887588, PMID:21669731, PMID:12969431, PMID:12959132, PMID:12953104, PMID:14563930, PMID:14523250, PMID:14615593, PMID:14605231, PMID:14605230, PMID:14605227, PMID:14605225, PMID:14605222, PMID:14597662, PMID:14686433, PMID:14681527, PMID:14653999, PMID:14645734, PMID:14645731, PMID:14645728, PMID:14871309, PMID:15043846, PMID:15077624, PMID:15155879, PMID:15144375, PMID:15170492, PMID:15273290, PMID:15333756, PMID:15377754, PMID:15486102, PMID:15465053, PMID:15665470, PMID:15610357, PMID:15695459, PMID:15695552, PMID:15561724, PMID:15546364, PMID:15653798, PMID:15741320, PMID:15707897, PMID:15469493, PMID:15356322, PMID:15031264, PMID:12795702, PMID:12692350, PMID:11891264, PMID:11577181, PMID:11457980, PMID:15908594, PMID:15960622, PMID:16136335, PMID:16212609, PMID:16244150, PMID:16332538, PMID:16500988, PMID:16709190, PMID:16680434, PMID:16861711, PMID:16908503, PMID:16966335, PMID:17076805, PMID:17160561, PMID:17284847, PMID:17346261, PMID:17335514, PMID:17384162, PMID:17504457, PMID:17485859, PMID:17478635, PMID:17566111, PMID:17562072, PMID:17660358, PMID:16045472, PMID:17931351, PMID:17929051, PMID:18033885, PMID:18028293, PMID:18024556, PMID:17982000, PMID:18203870, PMID:18192437, PMID:18266905, PMID:18245378, PMID:18375607, PMID:18481083, PMID:18539749, PMID:18715961, PMID:18691930, PMID:18812498, PMID:18971430, PMID:18952772, PMID:18980642, PMID:19232775, PMID:19208901, PMID:19192205, PMID:19286967, PMID:19255368, PMID:19403732, PMID:12827204, PMID:16885032, PMID:17699755, PMID:18564962, PMID:18722184, PMID:19453482, PMID:19482971, PMID:16384903, PMID:18296722, PMID:18266898, PMID:18670649, PMID:18768161, PMID:19381463, PMID:19568771, PMID:19704706, PMID:19704562, PMID:19704768, PMID:19704607, PMID:19666535, PMID:19761615, PMID:19741046, PMID:19734083, PMID:19808946, PMID:19794114, PMID:19932106, PMID:19965572, PMID:20031917, PMID:20061554, PMID:20298479, PMID:20203237, PMID:20202166, PMID:20491669, PMID:20473552, PMID:20435902, PMID:20739301, PMID:20864544, PMID:19347568, PMID:19619162, PMID:20935176, PMID:21097709, PMID:21046322, PMID:20734269, PMID:21170386, PMID:21255161, PMID:21317377, PMID:21455024, PMID:21453983, PMID:21525334, PMID:21807888, PMID:21398429, PMID:21928113, PMID:21908721, PMID:21896889, PMID:21969386, PMID:22095046, PMID:22067110, PMID:22171633, PMID:22145973, PMID:21803941, PMID:21884939, PMID:22321255, PMID:22311777, PMID:22303272, PMID:22293854, PMID:22374392, PMID:22232680, PMID:22516823, PMID:22498774, PMID:22481136, PMID:22463079, PMID:22645532, PMID:22732244, PMID:22739826, PMID:22843485, PMID:22836504, PMID:22824128, PMID:22782888, PMID:22773817, PMID:22760208, PMID:11094977, PMID:22995285, PMID:22990446, PMID:23292879, PMID:23275881, PMID:23371951, PMID:23391578, PMID:23456246, PMID:23590427, PMID:22948663, PMID:23799885, PMID:23772959, PMID:23007554, PMID:23974911, PMID:24078666, PMID:23893169, PMID:23303916, PMID:24471518, PMID:24471455, PMID:24304604, PMID:22913784, PMID:23503597, PMID:24013793, PMID:24246712, PMID:24651064, PMID:24808098, PMID:24794133, PMID:24604733, PMID:25052717, PMID:25221561, PMID:25333270, PMID:25297540, PMID:25450360, PMID:25627066, locus:2012300; locus_type=protein_coding
AT1G09570.2	chr1:003095498	0.0	C/3095498-3095699,3095782-3096072,3096143-3096959,3097158-3098892	AT1G09570.2 CDS AT1G09570 ID=AT1G09570.2; Parent=AT1G09570; Name=AT1G09570.2; Note=phytochrome A; curator_summary=Light-labile cytoplasmic red/far-red light photoreceptor involved in the regulation of photomorphogenesis. It exists in two inter-convertible forms: Pr and Pfr (active) and functions as a dimer.The N terminus carries a single tetrapyrrole chromophore%2C and the C terminus is involved in dimerization. It is the sole photoreceptor mediating the FR high irradiance response (HIR). Major regulator in red-light induction of phototropic enhancement. Involved in the regulation of de-etiolation. Involved in gravitropism and phototropism. Requires FHY1 for nuclear accumulation.; conf_class=6; symbol=PHYA; Alias=FHY2, FAR RED ELONGATED HYPOCOTYL 2, FRE1, FAR RED ELONGATED 1, HY8, ELONGATED HYPOCOTYL 8; full_name=phytochrome A; computational_description=phytochrome A (PHYA)%3B CONTAINS InterPro DOMAIN/s: Phytochrome%2C central region (InterPro:IPR013515)%2C Signal transduction histidine kinase%2C core (InterPro:IPR005467)%2C PAS fold (InterPro:IPR013767)%2C PAS (InterPro:IPR000014)%2C Phytochrome chromophore attachment domain (InterPro:IPR016132)%2C ATPase-like%2C ATP-binding domain (InterPro:IPR003594)%2C PAS fold-2 (InterPro:IPR013654)%2C Phytochrome A/B/C/D/E (InterPro:IPR012129)%2C Phytochrome (InterPro:IPR001294)%2C Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain (InterPro:IPR003661)%2C Phytochrome chromophore binding site (InterPro:IPR013516)%2C GAF (InterPro:IPR003018)%3B BEST Arabidopsis thaliana protein match is: phytochrome C (TAIR:AT5G35840.1)%3B Has 30353 Blast hits to 29854 proteins in 3804 species: Archae - 337%3B Bacteria - 24139%3B Metazoa - 4%3B Fungi - 596%3B Plants - 4116%3B Viruses - 7%3B Other Eukaryotes - 1154 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:10985392, PMID:10982420, PMID:10944157, PMID:10929116, PMID:10921909, PMID:10908878, PMID:10899984, PMID:10824602, PMID:10817761, PMID:10806240, PMID:10792828, PMID:10760243, PMID:10759510, PMID:10750908, PMID:10734217, PMID:10649883, PMID:10631258, PMID:10631245, PMID:10611382, PMID:10594107, PMID:10571889, PMID:10571885, PMID:10570212, PMID:10524631, PMID:10517849, PMID:10449589, PMID:10444599, PMID:10417700, PMID:10379648, PMID:10348744, PMID:10333589, PMID:10205059, PMID:10198109, PMID:9951735, PMID:9881166, PMID:9881161, PMID:9845368, PMID:9839465, PMID:9822379, PMID:9800208, PMID:9778848, PMID:9744096, PMID:9744095, PMID:9733523, PMID:9733522, PMID:9724694, PMID:9701582, PMID:9681030, PMID:9680978, PMID:9651577, PMID:9634578, PMID:9611171, PMID:9536072, PMID:9477570, PMID:9540220, PMID:9491613, PMID:9418049, PMID:9414562, PMID:9368413, PMID:9351250, PMID:9351247, PMID:9306692, PMID:9276958, PMID:9252112, PMID:9212468, PMID:9193095, PMID:9144963, PMID:9112768, PMID:9107032, PMID:9085579, PMID:9011096, PMID:9011093, PMID:9011090, PMID:8938405, PMID:8893541, PMID:8865668, PMID:8843950, PMID:8755615, PMID:8633007, PMID:8624438, PMID:8818290, PMID:8587979, PMID:8718628, PMID:8616214, PMID:8577852, PMID:8564296, PMID:7567981, PMID:8589627, PMID:7659750, PMID:7630933, PMID:7757114, PMID:7716243, PMID:7539307, PMID:8547813, PMID:7767236, PMID:7991704, PMID:7881072, PMID:8049367, PMID:8180501, PMID:8016219, PMID:8400877, PMID:8364355, PMID:8439743, PMID:1536928, PMID:2005872, PMID:2606345, PMID:11090209, PMID:11089975, PMID:11069292, PMID:11156608, PMID:11115889, PMID:11581165, PMID:11711433, PMID:11706180, PMID:11684663, PMID:11788763, PMID:11760010, PMID:11752385, PMID:11752374, PMID:11743124, PMID:11743105, PMID:11726931, PMID:11883605, PMID:11889039, PMID:11607244, PMID:11161059, PMID:11299375, PMID:11493548, PMID:11319034, PMID:11260499, PMID:11549758, PMID:11553757, PMID:11481498, PMID:11449056, PMID:11461903, PMID:11402195, PMID:11402206, PMID:11402210, PMID:11421077, PMID:11930018, PMID:12006496, PMID:12061902, PMID:12119377, PMID:12119373, PMID:12114567, PMID:12100485, PMID:12172837, PMID:12148528, PMID:12324588, PMID:12244439, PMID:12239570, PMID:12232194, PMID:12232154, PMID:12232088, PMID:12231818, PMID:12228380, PMID:12226524, PMID:12226523, PMID:12226519, PMID:12226195, PMID:12220265, PMID:12472688, PMID:12468726, PMID:10995393, PMID:12586894, PMID:12578985, PMID:12548286, PMID:12644690, PMID:12711229, PMID:12694592, PMID:12694283, PMID:12753585, PMID:11722775, PMID:11726703, PMID:12826621, PMID:12887588, PMID:21669731, PMID:12969431, PMID:12959132, PMID:12953104, PMID:14563930, PMID:14523250, PMID:14615593, PMID:14605231, PMID:14605230, PMID:14605227, PMID:14605225, PMID:14605222, PMID:14597662, PMID:14686433, PMID:14681527, PMID:14653999, PMID:14645734, PMID:14645731, PMID:14645728, PMID:14871309, PMID:15043846, PMID:15077624, PMID:15155879, PMID:15144375, PMID:15170492, PMID:15273290, PMID:15333756, PMID:15377754, PMID:15486102, PMID:15465053, PMID:15665470, PMID:15610357, PMID:15695459, PMID:15695552, PMID:15561724, PMID:15546364, PMID:15653798, PMID:15741320, PMID:15707897, PMID:15469493, PMID:15356322, PMID:15031264, PMID:12795702, PMID:12692350, PMID:11891264, PMID:11577181, PMID:11457980, PMID:15908594, PMID:15960622, PMID:16136335, PMID:16212609, PMID:16244150, PMID:16332538, PMID:16500988, PMID:16709190, PMID:16680434, PMID:16861711, PMID:16908503, PMID:16966335, PMID:17076805, PMID:17160561, PMID:17284847, PMID:17346261, PMID:17335514, PMID:17384162, PMID:17504457, PMID:17485859, PMID:17478635, PMID:17566111, PMID:17562072, PMID:17660358, PMID:16045472, PMID:17931351, PMID:17929051, PMID:18033885, PMID:18028293, PMID:18024556, PMID:17982000, PMID:18203870, PMID:18192437, PMID:18266905, PMID:18245378, PMID:18375607, PMID:18481083, PMID:18539749, PMID:18715961, PMID:18691930, PMID:18812498, PMID:18971430, PMID:18952772, PMID:18980642, PMID:19232775, PMID:19208901, PMID:19192205, PMID:19286967, PMID:19255368, PMID:19403732, PMID:12827204, PMID:16885032, PMID:17699755, PMID:18564962, PMID:18722184, PMID:19453482, PMID:19482971, PMID:16384903, PMID:18296722, PMID:18266898, PMID:18670649, PMID:18768161, PMID:19381463, PMID:19568771, PMID:19704706, PMID:19704562, PMID:19704768, PMID:19704607, PMID:19666535, PMID:19761615, PMID:19741046, PMID:19734083, PMID:19808946, PMID:19794114, PMID:19932106, PMID:19965572, PMID:20031917, PMID:20061554, PMID:20298479, PMID:20203237, PMID:20202166, PMID:20491669, PMID:20473552, PMID:20435902, PMID:20739301, PMID:20864544, PMID:19347568, PMID:19619162, PMID:20935176, PMID:21097709, PMID:21046322, PMID:20734269, PMID:21170386, PMID:21255161, PMID:21317377, PMID:21455024, PMID:21453983, PMID:21525334, PMID:21807888, PMID:21398429, PMID:21928113, PMID:21908721, PMID:21896889, PMID:21969386, PMID:22095046, PMID:22067110, PMID:22171633, PMID:22145973, PMID:21803941, PMID:21884939, PMID:22321255, PMID:22311777, PMID:22303272, PMID:22293854, PMID:22374392, PMID:22232680, PMID:22516823, PMID:22498774, PMID:22481136, PMID:22463079, PMID:22645532, PMID:22732244, PMID:22739826, PMID:22843485, PMID:22836504, PMID:22824128, PMID:22782888, PMID:22773817, PMID:22760208, PMID:11094977, PMID:22995285, PMID:22990446, PMID:23292879, PMID:23275881, PMID:23371951, PMID:23391578, PMID:23456246, PMID:23590427, PMID:22948663, PMID:23799885, PMID:23772959, PMID:23007554, PMID:23974911, PMID:24078666, PMID:23893169, PMID:23303916, PMID:24471518, PMID:24471455, PMID:24304604, PMID:22913784, PMID:23503597, PMID:24013793, PMID:24246712, PMID:24651064, PMID:24808098, PMID:24794133, PMID:24604733, PMID:25052717, PMID:25221561, PMID:25333270, PMID:25297540, PMID:25450360, PMID:25627066, locus:2012300; locus_type=protein_coding
AT1G09570.3	chr1:003095498	0.0	C/3095498-3095699,3095782-3096072,3096143-3096959,3097158-3099223,3099423-3099427	AT1G09570.3 CDS AT1G09570 ID=AT1G09570.3; Parent=AT1G09570; Name=AT1G09570.3; Note=phytochrome A; symbol=PHYA; Alias=FHY2, FAR RED ELONGATED HYPOCOTYL 2, FRE1, FAR RED ELONGATED 1, HY8, ELONGATED HYPOCOTYL 8; full_name=phytochrome A; curator_summary=Light-labile cytoplasmic red/far-red light photoreceptor involved in the regulation of photomorphogenesis. It exists in two inter-convertible forms: Pr and Pfr (active) and functions as a dimer.The N terminus carries a single tetrapyrrole chromophore%2C and the C terminus is involved in dimerization. It is the sole photoreceptor mediating the FR high irradiance response (HIR). Major regulator in red-light induction of phototropic enhancement. Involved in the regulation of de-etiolation. Involved in gravitropism and phototropism. Requires FHY1 for nuclear accumulation.; computational_description=phytochrome A (PHYA)%3B CONTAINS InterPro DOMAIN/s: Phytochrome%2C central region (InterPro:IPR013515)%2C Signal transduction histidine kinase%2C core (InterPro:IPR005467)%2C PAS fold (InterPro:IPR013767)%2C PAS (InterPro:IPR000014)%2C Phytochrome chromophore attachment domain (InterPro:IPR016132)%2C ATPase-like%2C ATP-binding domain (InterPro:IPR003594)%2C PAS fold-2 (InterPro:IPR013654)%2C Phytochrome A/B/C/D/E (InterPro:IPR012129)%2C Phytochrome (InterPro:IPR001294)%2C Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain (InterPro:IPR003661)%2C Phytochrome chromophore binding site (InterPro:IPR013516)%2C GAF (InterPro:IPR003018)%3B BEST Arabidopsis thaliana protein match is: phytochrome C (TAIR:AT5G35840.1)%3B Has 30353 Blast hits to 29854 proteins in 3804 species: Archae - 337%3B Bacteria - 24139%3B Metazoa - 4%3B Fungi - 596%3B Plants - 4116%3B Viruses - 7%3B Other Eukaryotes - 1154 (source: NCBI BLink).; Dbxref=PMID:10985392, PMID:10982420, PMID:10944157, PMID:10929116, PMID:10921909, PMID:10908878, PMID:10899984, PMID:10824602, PMID:10817761, PMID:10806240, PMID:10792828, PMID:10760243, PMID:10759510, PMID:10750908, PMID:10734217, PMID:10649883, PMID:10631258, PMID:10631245, PMID:10611382, PMID:10594107, PMID:10571889, PMID:10571885, PMID:10570212, PMID:10524631, PMID:10517849, PMID:10449589, PMID:10444599, PMID:10417700, PMID:10379648, PMID:10348744, PMID:10333589, PMID:10205059, PMID:10198109, PMID:9951735, PMID:9881166, PMID:9881161, PMID:9845368, PMID:9839465, PMID:9822379, PMID:9800208, PMID:9778848, PMID:9744096, PMID:9744095, PMID:9733523, PMID:9733522, PMID:9724694, PMID:9701582, PMID:9681030, PMID:9680978, PMID:9651577, PMID:9634578, PMID:9611171, PMID:9536072, PMID:9477570, PMID:9540220, PMID:9491613, PMID:9418049, PMID:9414562, PMID:9368413, PMID:9351250, PMID:9351247, PMID:9306692, PMID:9276958, PMID:9252112, PMID:9212468, PMID:9193095, PMID:9144963, PMID:9112768, PMID:9107032, PMID:9085579, PMID:9011096, PMID:9011093, PMID:9011090, PMID:8938405, PMID:8893541, PMID:8865668, PMID:8843950, PMID:8755615, PMID:8633007, PMID:8624438, PMID:8818290, PMID:8587979, PMID:8718628, PMID:8616214, PMID:8577852, PMID:8564296, PMID:7567981, PMID:8589627, PMID:7659750, PMID:7630933, PMID:7757114, PMID:7716243, PMID:7539307, PMID:8547813, PMID:7767236, PMID:7991704, PMID:7881072, PMID:8049367, PMID:8180501, PMID:8016219, PMID:8400877, PMID:8364355, PMID:8439743, PMID:1536928, PMID:2005872, PMID:2606345, PMID:11090209, PMID:11089975, PMID:11069292, PMID:11156608, PMID:11115889, PMID:11581165, PMID:11711433, PMID:11706180, PMID:11684663, PMID:11788763, PMID:11760010, PMID:11752385, PMID:11752374, PMID:11743124, PMID:11743105, PMID:11726931, PMID:11883605, PMID:11889039, PMID:11607244, PMID:11161059, PMID:11299375, PMID:11493548, PMID:11319034, PMID:11260499, PMID:11549758, PMID:11553757, PMID:11481498, PMID:11449056, PMID:11461903, PMID:11402195, PMID:11402206, PMID:11402210, PMID:11421077, PMID:11930018, PMID:12006496, PMID:12061902, PMID:12119377, PMID:12119373, PMID:12114567, PMID:12100485, PMID:12172837, PMID:12148528, PMID:12324588, PMID:12244439, PMID:12239570, PMID:12232194, PMID:12232154, PMID:12232088, PMID:12231818, PMID:12228380, PMID:12226524, PMID:12226523, PMID:12226519, PMID:12226195, PMID:12220265, PMID:12472688, PMID:12468726, PMID:10995393, PMID:12586894, PMID:12578985, PMID:12548286, PMID:12644690, PMID:12711229, PMID:12694592, PMID:12694283, PMID:12753585, PMID:11722775, PMID:11726703, PMID:12826621, PMID:12887588, PMID:21669731, PMID:12969431, PMID:12959132, PMID:12953104, PMID:14563930, PMID:14523250, PMID:14615593, PMID:14605231, PMID:14605230, PMID:14605227, PMID:14605225, PMID:14605222, PMID:14597662, PMID:14686433, PMID:14681527, PMID:14653999, PMID:14645734, PMID:14645731, PMID:14645728, PMID:14871309, PMID:15043846, PMID:15077624, PMID:15155879, PMID:15144375, PMID:15170492, PMID:15273290, PMID:15333756, PMID:15377754, PMID:15486102, PMID:15465053, PMID:15665470, PMID:15610357, PMID:15695459, PMID:15695552, PMID:15561724, PMID:15546364, PMID:15653798, PMID:15741320, PMID:15707897, PMID:15469493, PMID:15356322, PMID:15031264, PMID:12795702, PMID:12692350, PMID:11891264, PMID:11577181, PMID:11457980, PMID:15908594, PMID:15960622, PMID:16136335, PMID:16212609, PMID:16244150, PMID:16332538, PMID:16500988, PMID:16709190, PMID:16680434, PMID:16861711, PMID:16908503, PMID:16966335, PMID:17076805, PMID:17160561, PMID:17284847, PMID:17346261, PMID:17335514, PMID:17384162, PMID:17504457, PMID:17485859, PMID:17478635, PMID:17566111, PMID:17562072, PMID:17660358, PMID:16045472, PMID:17931351, PMID:17929051, PMID:18033885, PMID:18028293, PMID:18024556, PMID:17982000, PMID:18203870, PMID:18192437, PMID:18266905, PMID:18245378, PMID:18375607, PMID:18481083, PMID:18539749, PMID:18715961, PMID:18691930, PMID:18812498, PMID:18971430, PMID:18952772, PMID:18980642, PMID:19232775, PMID:19208901, PMID:19192205, PMID:19286967, PMID:19255368, PMID:19403732, PMID:12827204, PMID:16885032, PMID:17699755, PMID:18564962, PMID:18722184, PMID:19453482, PMID:19482971, PMID:16384903, PMID:18296722, PMID:18266898, PMID:18670649, PMID:18768161, PMID:19381463, PMID:19568771, PMID:19704706, PMID:19704562, PMID:19704768, PMID:19704607, PMID:19666535, PMID:19761615, PMID:19741046, PMID:19734083, PMID:19808946, PMID:19794114, PMID:19932106, PMID:19965572, PMID:20031917, PMID:20061554, PMID:20298479, PMID:20203237, PMID:20202166, PMID:20491669, PMID:20473552, PMID:20435902, PMID:20739301, PMID:20864544, PMID:19347568, PMID:19619162, PMID:20935176, PMID:21097709, PMID:21046322, PMID:20734269, PMID:21170386, PMID:21255161, PMID:21317377, PMID:21455024, PMID:21453983, PMID:21525334, PMID:21807888, PMID:21398429, PMID:21928113, PMID:21908721, PMID:21896889, PMID:21969386, PMID:22095046, PMID:22067110, PMID:22171633, PMID:22145973, PMID:21803941, PMID:21884939, PMID:22321255, PMID:22311777, PMID:22303272, PMID:22293854, PMID:22374392, PMID:22232680, PMID:22516823, PMID:22498774, PMID:22481136, PMID:22463079, PMID:22645532, PMID:22732244, PMID:22739826, PMID:22843485, PMID:22836504, PMID:22824128, PMID:22782888, PMID:22773817, PMID:22760208, PMID:11094977, PMID:22995285, PMID:22990446, PMID:23292879, PMID:23275881, PMID:23371951, PMID:23391578, PMID:23456246, PMID:23590427, PMID:22948663, PMID:23799885, PMID:23772959, PMID:23007554, PMID:23974911, PMID:24078666, PMID:23893169, PMID:23303916, PMID:24471518, PMID:24471455, PMID:24304604, PMID:22913784, PMID:23503597, PMID:24013793, PMID:24246712, PMID:24651064, PMID:24808098, PMID:24794133, PMID:24604733, PMID:25052717, PMID:25221561, PMID:25333270, PMID:25297540, PMID:25450360, PMID:25627066, locus:2012300; locus_type=protein_coding
AT1G09570.4	chr1:003095498	0.0	C/3095498-3095699,3095782-3096072,3096143-3096959,3097158-3099216	AT1G09570.4 CDS AT1G09570 ID=AT1G09570.4; Parent=AT1G09570; Name=AT1G09570.4; Note=phytochrome A; symbol=PHYA; Alias=FHY2, FAR RED ELONGATED HYPOCOTYL 2, FRE1, FAR RED ELONGATED 1, HY8, ELONGATED HYPOCOTYL 8; full_name=phytochrome A; Dbxref=PMID:10985392, PMID:10982420, PMID:10944157, PMID:10929116, PMID:10921909, PMID:10908878, PMID:10899984, PMID:10824602, PMID:10817761, PMID:10806240, PMID:10792828, PMID:10760243, PMID:10759510, PMID:10750908, PMID:10734217, PMID:10649883, PMID:10631258, PMID:10631245, PMID:10611382, PMID:10594107, PMID:10571889, PMID:10571885, PMID:10570212, PMID:10524631, PMID:10517849, PMID:10449589, PMID:10444599, PMID:10417700, PMID:10379648, PMID:10348744, PMID:10333589, PMID:10205059, PMID:10198109, PMID:9951735, PMID:9881166, PMID:9881161, PMID:9845368, PMID:9839465, PMID:9822379, PMID:9800208, PMID:9778848, PMID:9744096, PMID:9744095, PMID:9733523, PMID:9733522, PMID:9724694, PMID:9701582, PMID:9681030, PMID:9680978, PMID:9651577, PMID:9634578, PMID:9611171, PMID:9536072, PMID:9477570, PMID:9540220, PMID:9491613, PMID:9418049, PMID:9414562, PMID:9368413, PMID:9351250, PMID:9351247, PMID:9306692, PMID:9276958, PMID:9252112, PMID:9212468, PMID:9193095, PMID:9144963, PMID:9112768, PMID:9107032, PMID:9085579, PMID:9011096, PMID:9011093, PMID:9011090, PMID:8938405, PMID:8893541, PMID:8865668, PMID:8843950, PMID:8755615, PMID:8633007, PMID:8624438, PMID:8818290, PMID:8587979, PMID:8718628, PMID:8616214, PMID:8577852, PMID:8564296, PMID:7567981, PMID:8589627, PMID:7659750, PMID:7630933, PMID:7757114, PMID:7716243, PMID:7539307, PMID:8547813, PMID:7767236, PMID:7991704, PMID:7881072, PMID:8049367, PMID:8180501, PMID:8016219, PMID:8400877, PMID:8364355, PMID:8439743, PMID:1536928, PMID:2005872, PMID:2606345, PMID:11090209, PMID:11089975, PMID:11069292, PMID:11156608, PMID:11115889, PMID:11581165, PMID:11711433, PMID:11706180, PMID:11684663, PMID:11788763, PMID:11760010, PMID:11752385, PMID:11752374, PMID:11743124, PMID:11743105, PMID:11726931, PMID:11883605, PMID:11889039, PMID:11607244, PMID:11161059, PMID:11299375, PMID:11493548, PMID:11319034, PMID:11260499, PMID:11549758, PMID:11553757, PMID:11481498, PMID:11449056, PMID:11461903, PMID:11402195, PMID:11402206, PMID:11402210, PMID:11421077, PMID:11930018, PMID:12006496, PMID:12061902, PMID:12119377, PMID:12119373, PMID:12114567, PMID:12100485, PMID:12172837, PMID:12148528, PMID:12324588, PMID:12244439, PMID:12239570, PMID:12232194, PMID:12232154, PMID:12232088, PMID:12231818, PMID:12228380, PMID:12226524, PMID:12226523, PMID:12226519, PMID:12226195, PMID:12220265, PMID:12472688, PMID:12468726, PMID:10995393, PMID:12586894, PMID:12578985, PMID:12548286, PMID:12644690, PMID:12711229, PMID:12694592, PMID:12694283, PMID:12753585, PMID:11722775, PMID:11726703, PMID:12826621, PMID:12887588, PMID:21669731, PMID:12969431, PMID:12959132, PMID:12953104, PMID:14563930, PMID:14523250, PMID:14615593, PMID:14605231, PMID:14605230, PMID:14605227, PMID:14605225, PMID:14605222, PMID:14597662, PMID:14686433, PMID:14681527, PMID:14653999, PMID:14645734, PMID:14645731, PMID:14645728, PMID:14871309, PMID:15043846, PMID:15077624, PMID:15155879, PMID:15144375, PMID:15170492, PMID:15273290, PMID:15333756, PMID:15377754, PMID:15486102, PMID:15465053, PMID:15665470, PMID:15610357, PMID:15695459, PMID:15695552, PMID:15561724, PMID:15546364, PMID:15653798, PMID:15741320, PMID:15707897, PMID:15469493, PMID:15356322, PMID:15031264, PMID:12795702, PMID:12692350, PMID:11891264, PMID:11577181, PMID:11457980, PMID:15908594, PMID:15960622, PMID:16136335, PMID:16212609, PMID:16244150, PMID:16332538, PMID:16500988, PMID:16709190, PMID:16680434, PMID:16861711, PMID:16908503, PMID:16966335, PMID:17076805, PMID:17160561, PMID:17284847, PMID:17346261, PMID:17335514, PMID:17384162, PMID:17504457, PMID:17485859, PMID:17478635, PMID:17566111, PMID:17562072, PMID:17660358, PMID:16045472, PMID:17931351, PMID:17929051, PMID:18033885, PMID:18028293, PMID:18024556, PMID:17982000, PMID:18203870, PMID:18192437, PMID:18266905, PMID:18245378, PMID:18375607, PMID:18481083, PMID:18539749, PMID:18715961, PMID:18691930, PMID:18812498, PMID:18971430, PMID:18952772, PMID:18980642, PMID:19232775, PMID:19208901, PMID:19192205, PMID:19286967, PMID:19255368, PMID:19403732, PMID:12827204, PMID:16885032, PMID:17699755, PMID:18564962, PMID:18722184, PMID:19453482, PMID:19482971, PMID:16384903, PMID:18296722, PMID:18266898, PMID:18670649, PMID:18768161, PMID:19381463, PMID:19568771, PMID:19704706, PMID:19704562, PMID:19704768, PMID:19704607, PMID:19666535, PMID:19761615, PMID:19741046, PMID:19734083, PMID:19808946, PMID:19794114, PMID:19932106, PMID:19965572, PMID:20031917, PMID:20061554, PMID:20298479, PMID:20203237, PMID:20202166, PMID:20491669, PMID:20473552, PMID:20435902, PMID:20739301, PMID:20864544, PMID:19347568, PMID:19619162, PMID:20935176, PMID:21097709, PMID:21046322, PMID:20734269, PMID:21170386, PMID:21255161, PMID:21317377, PMID:21455024, PMID:21453983, PMID:21525334, PMID:21807888, PMID:21398429, PMID:21928113, PMID:21908721, PMID:21896889, PMID:21969386, PMID:22095046, PMID:22067110, PMID:22171633, PMID:22145973, PMID:21803941, PMID:21884939, PMID:22321255, PMID:22311777, PMID:22303272, PMID:22293854, PMID:22374392, PMID:22232680, PMID:22516823, PMID:22498774, PMID:22481136, PMID:22463079, PMID:22645532, PMID:22732244, PMID:22739826, PMID:22843485, PMID:22836504, PMID:22824128, PMID:22782888, PMID:22773817, PMID:22760208, PMID:11094977, PMID:22995285, PMID:22990446, PMID:23292879, PMID:23275881, PMID:23371951, PMID:23391578, PMID:23456246, PMID:23590427, PMID:22948663, PMID:23799885, PMID:23772959, PMID:23007554, PMID:23974911, PMID:24078666, PMID:23893169, PMID:23303916, PMID:24471518, PMID:24471455, PMID:24304604, PMID:22913784, PMID:23503597, PMID:24013793, PMID:24246712, PMID:24651064, PMID:24808098, PMID:24794133, PMID:24604733, PMID:25052717, PMID:25221561, PMID:25333270, PMID:25297540, PMID:25450360, PMID:25627066, locus:2012300; curator_summary=Light-labile cytoplasmic red/far-red light photoreceptor involved in the regulation of photomorphogenesis. It exists in two inter-convertible forms: Pr and Pfr (active) and functions as a dimer.The N terminus carries a single tetrapyrrole chromophore%2C and the C terminus is involved in dimerization. It is the sole photoreceptor mediating the FR high irradiance response (HIR). Major regulator in red-light induction of phototropic enhancement. Involved in the regulation of de-etiolation. Involved in gravitropism and phototropism. Requires FHY1 for nuclear accumulation.; computational_description=phytochrome A (PHYA)%3B CONTAINS InterPro DOMAIN/s: Phytochrome%2C central region (InterPro:IPR013515)%2C Signal transduction histidine kinase%2C core (InterPro:IPR005467)%2C PAS fold (InterPro:IPR013767)%2C PAS (InterPro:IPR000014)%2C Phytochrome chromophore attachment domain (InterPro:IPR016132)%2C ATPase-like%2C ATP-binding domain (InterPro:IPR003594)%2C PAS fold-2 (InterPro:IPR013654)%2C Phytochrome A/B/C/D/E (InterPro:IPR012129)%2C Phytochrome (InterPro:IPR001294)%2C Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain (InterPro:IPR003661)%2C Phytochrome chromophore binding site (InterPro:IPR013516)%2C GAF (InterPro:IPR003018)%3B BEST Arabidopsis thaliana protein match is: phytochrome C (TAIR:AT5G35840.1)%3B Has 30353 Blast hits to 29854 proteins in 3804 species: Archae - 337%3B Bacteria - 24139%3B Metazoa - 4%3B Fungi - 596%3B Plants - 4116%3B Viruses - 7%3B Other Eukaryotes - 1154 (source: NCBI BLink).; locus_type=protein_coding
AT1G09570.5	chr1:003095498	0.0	C/3095498-3095699,3095782-3096072,3096143-3096959,3097158-3099216	AT1G09570.5 CDS AT1G09570 ID=AT1G09570.5; Parent=AT1G09570; Name=AT1G09570.5; Note=phytochrome A; symbol=PHYA; Alias=FHY2, FAR RED ELONGATED HYPOCOTYL 2, FRE1, FAR RED ELONGATED 1, HY8, ELONGATED HYPOCOTYL 8; full_name=phytochrome A; Dbxref=PMID:10985392, PMID:10982420, PMID:10944157, PMID:10929116, PMID:10921909, PMID:10908878, PMID:10899984, PMID:10824602, PMID:10817761, PMID:10806240, PMID:10792828, PMID:10760243, PMID:10759510, PMID:10750908, PMID:10734217, PMID:10649883, PMID:10631258, PMID:10631245, PMID:10611382, PMID:10594107, PMID:10571889, PMID:10571885, PMID:10570212, PMID:10524631, PMID:10517849, PMID:10449589, PMID:10444599, PMID:10417700, PMID:10379648, PMID:10348744, PMID:10333589, PMID:10205059, PMID:10198109, PMID:9951735, PMID:9881166, PMID:9881161, PMID:9845368, PMID:9839465, PMID:9822379, PMID:9800208, PMID:9778848, PMID:9744096, PMID:9744095, PMID:9733523, PMID:9733522, PMID:9724694, PMID:9701582, PMID:9681030, PMID:9680978, PMID:9651577, PMID:9634578, PMID:9611171, PMID:9536072, PMID:9477570, PMID:9540220, PMID:9491613, PMID:9418049, PMID:9414562, PMID:9368413, PMID:9351250, PMID:9351247, PMID:9306692, PMID:9276958, PMID:9252112, PMID:9212468, PMID:9193095, PMID:9144963, PMID:9112768, PMID:9107032, PMID:9085579, PMID:9011096, PMID:9011093, PMID:9011090, PMID:8938405, PMID:8893541, PMID:8865668, PMID:8843950, PMID:8755615, PMID:8633007, PMID:8624438, PMID:8818290, PMID:8587979, PMID:8718628, PMID:8616214, PMID:8577852, PMID:8564296, PMID:7567981, PMID:8589627, PMID:7659750, PMID:7630933, PMID:7757114, PMID:7716243, PMID:7539307, PMID:8547813, PMID:7767236, PMID:7991704, PMID:7881072, PMID:8049367, PMID:8180501, PMID:8016219, PMID:8400877, PMID:8364355, PMID:8439743, PMID:1536928, PMID:2005872, PMID:2606345, PMID:11090209, PMID:11089975, PMID:11069292, PMID:11156608, PMID:11115889, PMID:11581165, PMID:11711433, PMID:11706180, PMID:11684663, PMID:11788763, PMID:11760010, PMID:11752385, PMID:11752374, PMID:11743124, PMID:11743105, PMID:11726931, PMID:11883605, PMID:11889039, PMID:11607244, PMID:11161059, PMID:11299375, PMID:11493548, PMID:11319034, PMID:11260499, PMID:11549758, PMID:11553757, PMID:11481498, PMID:11449056, PMID:11461903, PMID:11402195, PMID:11402206, PMID:11402210, PMID:11421077, PMID:11930018, PMID:12006496, PMID:12061902, PMID:12119377, PMID:12119373, PMID:12114567, PMID:12100485, PMID:12172837, PMID:12148528, PMID:12324588, PMID:12244439, PMID:12239570, PMID:12232194, PMID:12232154, PMID:12232088, PMID:12231818, PMID:12228380, PMID:12226524, PMID:12226523, PMID:12226519, PMID:12226195, PMID:12220265, PMID:12472688, PMID:12468726, PMID:10995393, PMID:12586894, PMID:12578985, PMID:12548286, PMID:12644690, PMID:12711229, PMID:12694592, PMID:12694283, PMID:12753585, PMID:11722775, PMID:11726703, PMID:12826621, PMID:12887588, PMID:21669731, PMID:12969431, PMID:12959132, PMID:12953104, PMID:14563930, PMID:14523250, PMID:14615593, PMID:14605231, PMID:14605230, PMID:14605227, PMID:14605225, PMID:14605222, PMID:14597662, PMID:14686433, PMID:14681527, PMID:14653999, PMID:14645734, PMID:14645731, PMID:14645728, PMID:14871309, PMID:15043846, PMID:15077624, PMID:15155879, PMID:15144375, PMID:15170492, PMID:15273290, PMID:15333756, PMID:15377754, PMID:15486102, PMID:15465053, PMID:15665470, PMID:15610357, PMID:15695459, PMID:15695552, PMID:15561724, PMID:15546364, PMID:15653798, PMID:15741320, PMID:15707897, PMID:15469493, PMID:15356322, PMID:15031264, PMID:12795702, PMID:12692350, PMID:11891264, PMID:11577181, PMID:11457980, PMID:15908594, PMID:15960622, PMID:16136335, PMID:16212609, PMID:16244150, PMID:16332538, PMID:16500988, PMID:16709190, PMID:16680434, PMID:16861711, PMID:16908503, PMID:16966335, PMID:17076805, PMID:17160561, PMID:17284847, PMID:17346261, PMID:17335514, PMID:17384162, PMID:17504457, PMID:17485859, PMID:17478635, PMID:17566111, PMID:17562072, PMID:17660358, PMID:16045472, PMID:17931351, PMID:17929051, PMID:18033885, PMID:18028293, PMID:18024556, PMID:17982000, PMID:18203870, PMID:18192437, PMID:18266905, PMID:18245378, PMID:18375607, PMID:18481083, PMID:18539749, PMID:18715961, PMID:18691930, PMID:18812498, PMID:18971430, PMID:18952772, PMID:18980642, PMID:19232775, PMID:19208901, PMID:19192205, PMID:19286967, PMID:19255368, PMID:19403732, PMID:12827204, PMID:16885032, PMID:17699755, PMID:18564962, PMID:18722184, PMID:19453482, PMID:19482971, PMID:16384903, PMID:18296722, PMID:18266898, PMID:18670649, PMID:18768161, PMID:19381463, PMID:19568771, PMID:19704706, PMID:19704562, PMID:19704768, PMID:19704607, PMID:19666535, PMID:19761615, PMID:19741046, PMID:19734083, PMID:19808946, PMID:19794114, PMID:19932106, PMID:19965572, PMID:20031917, PMID:20061554, PMID:20298479, PMID:20203237, PMID:20202166, PMID:20491669, PMID:20473552, PMID:20435902, PMID:20739301, PMID:20864544, PMID:19347568, PMID:19619162, PMID:20935176, PMID:21097709, PMID:21046322, PMID:20734269, PMID:21170386, PMID:21255161, PMID:21317377, PMID:21455024, PMID:21453983, PMID:21525334, PMID:21807888, PMID:21398429, PMID:21928113, PMID:21908721, PMID:21896889, PMID:21969386, PMID:22095046, PMID:22067110, PMID:22171633, PMID:22145973, PMID:21803941, PMID:21884939, PMID:22321255, PMID:22311777, PMID:22303272, PMID:22293854, PMID:22374392, PMID:22232680, PMID:22516823, PMID:22498774, PMID:22481136, PMID:22463079, PMID:22645532, PMID:22732244, PMID:22739826, PMID:22843485, PMID:22836504, PMID:22824128, PMID:22782888, PMID:22773817, PMID:22760208, PMID:11094977, PMID:22995285, PMID:22990446, PMID:23292879, PMID:23275881, PMID:23371951, PMID:23391578, PMID:23456246, PMID:23590427, PMID:22948663, PMID:23799885, PMID:23772959, PMID:23007554, PMID:23974911, PMID:24078666, PMID:23893169, PMID:23303916, PMID:24471518, PMID:24471455, PMID:24304604, PMID:22913784, PMID:23503597, PMID:24013793, PMID:24246712, PMID:24651064, PMID:24808098, PMID:24794133, PMID:24604733, PMID:25052717, PMID:25221561, PMID:25333270, PMID:25297540, PMID:25450360, PMID:25627066, locus:2012300; curator_summary=Light-labile cytoplasmic red/far-red light photoreceptor involved in the regulation of photomorphogenesis. It exists in two inter-convertible forms: Pr and Pfr (active) and functions as a dimer.The N terminus carries a single tetrapyrrole chromophore%2C and the C terminus is involved in dimerization. It is the sole photoreceptor mediating the FR high irradiance response (HIR). Major regulator in red-light induction of phototropic enhancement. Involved in the regulation of de-etiolation. Involved in gravitropism and phototropism. Requires FHY1 for nuclear accumulation.; computational_description=phytochrome A (PHYA)%3B CONTAINS InterPro DOMAIN/s: Phytochrome%2C central region (InterPro:IPR013515)%2C Signal transduction histidine kinase%2C core (InterPro:IPR005467)%2C PAS fold (InterPro:IPR013767)%2C PAS (InterPro:IPR000014)%2C Phytochrome chromophore attachment domain (InterPro:IPR016132)%2C ATPase-like%2C ATP-binding domain (InterPro:IPR003594)%2C PAS fold-2 (InterPro:IPR013654)%2C Phytochrome A/B/C/D/E (InterPro:IPR012129)%2C Phytochrome (InterPro:IPR001294)%2C Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain (InterPro:IPR003661)%2C Phytochrome chromophore binding site (InterPro:IPR013516)%2C GAF (InterPro:IPR003018)%3B BEST Arabidopsis thaliana protein match is: phytochrome C (TAIR:AT5G35840.1)%3B Has 30353 Blast hits to 29854 proteins in 3804 species: Archae - 337%3B Bacteria - 24139%3B Metazoa - 4%3B Fungi - 596%3B Plants - 4116%3B Viruses - 7%3B Other Eukaryotes - 1154 (source: NCBI BLink).; locus_type=protein_coding
AT1G09570.6	chr1:003095498	0.0	C/3095498-3095699,3095782-3096072,3096143-3096959,3097158-3099216	AT1G09570.6 CDS AT1G09570 ID=AT1G09570.6; Parent=AT1G09570; Name=AT1G09570.6; Note=phytochrome A; symbol=PHYA; Alias=FHY2, FAR RED ELONGATED HYPOCOTYL 2, FRE1, FAR RED ELONGATED 1, HY8, ELONGATED HYPOCOTYL 8; full_name=phytochrome A; Dbxref=PMID:10985392, PMID:10982420, PMID:10944157, PMID:10929116, PMID:10921909, PMID:10908878, PMID:10899984, PMID:10824602, PMID:10817761, PMID:10806240, PMID:10792828, PMID:10760243, PMID:10759510, PMID:10750908, PMID:10734217, PMID:10649883, PMID:10631258, PMID:10631245, PMID:10611382, PMID:10594107, PMID:10571889, PMID:10571885, PMID:10570212, PMID:10524631, PMID:10517849, PMID:10449589, PMID:10444599, PMID:10417700, PMID:10379648, PMID:10348744, PMID:10333589, PMID:10205059, PMID:10198109, PMID:9951735, PMID:9881166, PMID:9881161, PMID:9845368, PMID:9839465, PMID:9822379, PMID:9800208, PMID:9778848, PMID:9744096, PMID:9744095, PMID:9733523, PMID:9733522, PMID:9724694, PMID:9701582, PMID:9681030, PMID:9680978, PMID:9651577, PMID:9634578, PMID:9611171, PMID:9536072, PMID:9477570, PMID:9540220, PMID:9491613, PMID:9418049, PMID:9414562, PMID:9368413, PMID:9351250, PMID:9351247, PMID:9306692, PMID:9276958, PMID:9252112, PMID:9212468, PMID:9193095, PMID:9144963, PMID:9112768, PMID:9107032, PMID:9085579, PMID:9011096, PMID:9011093, PMID:9011090, PMID:8938405, PMID:8893541, PMID:8865668, PMID:8843950, PMID:8755615, PMID:8633007, PMID:8624438, PMID:8818290, PMID:8587979, PMID:8718628, PMID:8616214, PMID:8577852, PMID:8564296, PMID:7567981, PMID:8589627, PMID:7659750, PMID:7630933, PMID:7757114, PMID:7716243, PMID:7539307, PMID:8547813, PMID:7767236, PMID:7991704, PMID:7881072, PMID:8049367, PMID:8180501, PMID:8016219, PMID:8400877, PMID:8364355, PMID:8439743, PMID:1536928, PMID:2005872, PMID:2606345, PMID:11090209, PMID:11089975, PMID:11069292, PMID:11156608, PMID:11115889, PMID:11581165, PMID:11711433, PMID:11706180, PMID:11684663, PMID:11788763, PMID:11760010, PMID:11752385, PMID:11752374, PMID:11743124, PMID:11743105, PMID:11726931, PMID:11883605, PMID:11889039, PMID:11607244, PMID:11161059, PMID:11299375, PMID:11493548, PMID:11319034, PMID:11260499, PMID:11549758, PMID:11553757, PMID:11481498, PMID:11449056, PMID:11461903, PMID:11402195, PMID:11402206, PMID:11402210, PMID:11421077, PMID:11930018, PMID:12006496, PMID:12061902, PMID:12119377, PMID:12119373, PMID:12114567, PMID:12100485, PMID:12172837, PMID:12148528, PMID:12324588, PMID:12244439, PMID:12239570, PMID:12232194, PMID:12232154, PMID:12232088, PMID:12231818, PMID:12228380, PMID:12226524, PMID:12226523, PMID:12226519, PMID:12226195, PMID:12220265, PMID:12472688, PMID:12468726, PMID:10995393, PMID:12586894, PMID:12578985, PMID:12548286, PMID:12644690, PMID:12711229, PMID:12694592, PMID:12694283, PMID:12753585, PMID:11722775, PMID:11726703, PMID:12826621, PMID:12887588, PMID:21669731, PMID:12969431, PMID:12959132, PMID:12953104, PMID:14563930, PMID:14523250, PMID:14615593, PMID:14605231, PMID:14605230, PMID:14605227, PMID:14605225, PMID:14605222, PMID:14597662, PMID:14686433, PMID:14681527, PMID:14653999, PMID:14645734, PMID:14645731, PMID:14645728, PMID:14871309, PMID:15043846, PMID:15077624, PMID:15155879, PMID:15144375, PMID:15170492, PMID:15273290, PMID:15333756, PMID:15377754, PMID:15486102, PMID:15465053, PMID:15665470, PMID:15610357, PMID:15695459, PMID:15695552, PMID:15561724, PMID:15546364, PMID:15653798, PMID:15741320, PMID:15707897, PMID:15469493, PMID:15356322, PMID:15031264, PMID:12795702, PMID:12692350, PMID:11891264, PMID:11577181, PMID:11457980, PMID:15908594, PMID:15960622, PMID:16136335, PMID:16212609, PMID:16244150, PMID:16332538, PMID:16500988, PMID:16709190, PMID:16680434, PMID:16861711, PMID:16908503, PMID:16966335, PMID:17076805, PMID:17160561, PMID:17284847, PMID:17346261, PMID:17335514, PMID:17384162, PMID:17504457, PMID:17485859, PMID:17478635, PMID:17566111, PMID:17562072, PMID:17660358, PMID:16045472, PMID:17931351, PMID:17929051, PMID:18033885, PMID:18028293, PMID:18024556, PMID:17982000, PMID:18203870, PMID:18192437, PMID:18266905, PMID:18245378, PMID:18375607, PMID:18481083, PMID:18539749, PMID:18715961, PMID:18691930, PMID:18812498, PMID:18971430, PMID:18952772, PMID:18980642, PMID:19232775, PMID:19208901, PMID:19192205, PMID:19286967, PMID:19255368, PMID:19403732, PMID:12827204, PMID:16885032, PMID:17699755, PMID:18564962, PMID:18722184, PMID:19453482, PMID:19482971, PMID:16384903, PMID:18296722, PMID:18266898, PMID:18670649, PMID:18768161, PMID:19381463, PMID:19568771, PMID:19704706, PMID:19704562, PMID:19704768, PMID:19704607, PMID:19666535, PMID:19761615, PMID:19741046, PMID:19734083, PMID:19808946, PMID:19794114, PMID:19932106, PMID:19965572, PMID:20031917, PMID:20061554, PMID:20298479, PMID:20203237, PMID:20202166, PMID:20491669, PMID:20473552, PMID:20435902, PMID:20739301, PMID:20864544, PMID:19347568, PMID:19619162, PMID:20935176, PMID:21097709, PMID:21046322, PMID:20734269, PMID:21170386, PMID:21255161, PMID:21317377, PMID:21455024, PMID:21453983, PMID:21525334, PMID:21807888, PMID:21398429, PMID:21928113, PMID:21908721, PMID:21896889, PMID:21969386, PMID:22095046, PMID:22067110, PMID:22171633, PMID:22145973, PMID:21803941, PMID:21884939, PMID:22321255, PMID:22311777, PMID:22303272, PMID:22293854, PMID:22374392, PMID:22232680, PMID:22516823, PMID:22498774, PMID:22481136, PMID:22463079, PMID:22645532, PMID:22732244, PMID:22739826, PMID:22843485, PMID:22836504, PMID:22824128, PMID:22782888, PMID:22773817, PMID:22760208, PMID:11094977, PMID:22995285, PMID:22990446, PMID:23292879, PMID:23275881, PMID:23371951, PMID:23391578, PMID:23456246, PMID:23590427, PMID:22948663, PMID:23799885, PMID:23772959, PMID:23007554, PMID:23974911, PMID:24078666, PMID:23893169, PMID:23303916, PMID:24471518, PMID:24471455, PMID:24304604, PMID:22913784, PMID:23503597, PMID:24013793, PMID:24246712, PMID:24651064, PMID:24808098, PMID:24794133, PMID:24604733, PMID:25052717, PMID:25221561, PMID:25333270, PMID:25297540, PMID:25450360, PMID:25627066, locus:2012300; curator_summary=Light-labile cytoplasmic red/far-red light photoreceptor involved in the regulation of photomorphogenesis. It exists in two inter-convertible forms: Pr and Pfr (active) and functions as a dimer.The N terminus carries a single tetrapyrrole chromophore%2C and the C terminus is involved in dimerization. It is the sole photoreceptor mediating the FR high irradiance response (HIR). Major regulator in red-light induction of phototropic enhancement. Involved in the regulation of de-etiolation. Involved in gravitropism and phototropism. Requires FHY1 for nuclear accumulation.; computational_description=phytochrome A (PHYA)%3B CONTAINS InterPro DOMAIN/s: Phytochrome%2C central region (InterPro:IPR013515)%2C Signal transduction histidine kinase%2C core (InterPro:IPR005467)%2C PAS fold (InterPro:IPR013767)%2C PAS (InterPro:IPR000014)%2C Phytochrome chromophore attachment domain (InterPro:IPR016132)%2C ATPase-like%2C ATP-binding domain (InterPro:IPR003594)%2C PAS fold-2 (InterPro:IPR013654)%2C Phytochrome A/B/C/D/E (InterPro:IPR012129)%2C Phytochrome (InterPro:IPR001294)%2C Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain (InterPro:IPR003661)%2C Phytochrome chromophore binding site (InterPro:IPR013516)%2C GAF (InterPro:IPR003018)%3B BEST Arabidopsis thaliana protein match is: phytochrome C (TAIR:AT5G35840.1)%3B Has 30353 Blast hits to 29854 proteins in 3804 species: Archae - 337%3B Bacteria - 24139%3B Metazoa - 4%3B Fungi - 596%3B Plants - 4116%3B Viruses - 7%3B Other Eukaryotes - 1154 (source: NCBI BLink).; locus_type=protein_coding
AT1G09575.1	chr1:003101851	0.0	C/3101851-3102348,3102452-3102832	AT1G09575.1 CDS AT1G09575 ID=AT1G09575.1; Parent=AT1G09575; Name=AT1G09575.1; Note=calcium uniporter-like protein (DUF607); conf_class=2; computational_description=Protein of unknown function (DUF607)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF607 (InterPro:IPR006769)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF607) (TAIR:AT1G57610.2)%3B Has 384 Blast hits to 384 proteins in 123 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 148%3B Fungi - 56%3B Plants - 127%3B Viruses - 0%3B Other Eukaryotes - 53 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16024587, PMID:17335514, PMID:18775970, locus:505006112; locus_type=protein_coding
AT1G09575.2	chr1:003101851	0.0	C/3101851-3102348,3102452-3102832	AT1G09575.2 CDS AT1G09575 ID=AT1G09575.2; Parent=AT1G09575; Name=AT1G09575.2; Note=calcium uniporter-like protein (DUF607); Dbxref=PMID:16024587, PMID:17335514, PMID:18775970, locus:505006112; computational_description=Protein of unknown function (DUF607)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF607 (InterPro:IPR006769)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF607) (TAIR:AT1G57610.2)%3B Has 384 Blast hits to 384 proteins in 123 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 148%3B Fungi - 56%3B Plants - 127%3B Viruses - 0%3B Other Eukaryotes - 53 (source: NCBI BLink).; locus_type=protein_coding
AT1G09580.1	chr1:003104657	0.0	W/3104657-3104875,3105485-3105697,3105797-3105873,3105948-3106092	AT1G09580.1 CDS AT1G09580 ID=AT1G09580.1; Parent=AT1G09580; Name=AT1G09580.1; Note=emp24/gp25L/p24 family/GOLD family protein; conf_class=2; computational_description=emp24/gp25L/p24 family/GOLD family protein%3B FUNCTIONS IN: protein transmembrane transporter activity%3B INVOLVED IN: intracellular protein transport%2C transport%3B LOCATED IN: endomembrane system%2C integral to membrane%2C membrane%3B CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038)%2C emp24/gp25L/p24 (InterPro:IPR000348)%3B BEST Arabidopsis thaliana protein match is: emp24/gp25L/p24 family/GOLD family protein (TAIR:AT1G57620.1)%3B Has 1762 Blast hits to 1760 proteins in 238 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 806%3B Fungi - 509%3B Plants - 239%3B Viruses - 0%3B Other Eukaryotes - 208 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:20736450, locus:2012335; locus_type=protein_coding
AT1G09590.1	chr1:003106549	0.0	W/3106549-3106785,3107349-3107606	AT1G09590.1 CDS AT1G09590 ID=AT1G09590.1; Parent=AT1G09590; Name=AT1G09590.1; Note=Translation protein SH3-like family protein; conf_class=2; computational_description=Translation protein SH3-like family protein%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%3B LOCATED IN: cytosolic ribosome%2C ribosome%2C cytosolic large ribosomal subunit%2C nucleolus%2C chloroplast%3B EXPRESSED IN: guard cell%2C juvenile leaf%3B CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991)%2C Ribosomal protein L21e (InterPro:IPR001147)%2C Ribosomal protein L21e%2C conserved site (InterPro:IPR018259)%3B BEST Arabidopsis thaliana protein match is: Translation protein SH3-like family protein (TAIR:AT1G09690.1)%3B Has 1439 Blast hits to 1439 proteins in 381 species: Archae - 214%3B Bacteria - 0%3B Metazoa - 709%3B Fungi - 179%3B Plants - 136%3B Viruses - 0%3B Other Eukaryotes - 201 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11598216, PMID:15821981, PMID:17934214, PMID:18650403, PMID:22195043, locus:2012275; locus_type=protein_coding
AT1G09600.1	chr1:003108617	0.0	W/3108617-3109120,3109210-3109494,3109571-3110116,3110231-3110331,3110428-3110533,3110625-3111035,3111127-3111318	AT1G09600.1 CDS AT1G09600 ID=AT1G09600.1; Parent=AT1G09600; Name=AT1G09600.1; Note=Protein kinase superfamily protein; conf_class=6; computational_description=Protein kinase superfamily protein%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%2C N-terminal protein myristoylation%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 18 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase-like domain (InterPro:IPR011009)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G57700.1)%3B Has 123498 Blast hits to 122030 proteins in 4353 species: Archae - 93%3B Bacteria - 13546%3B Metazoa - 45885%3B Fungi - 12568%3B Plants - 30937%3B Viruses - 467%3B Other Eukaryotes - 20002 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:12912986, PMID:15686519, PMID:18775970, PMID:20736450, locus:2012290; locus_type=protein_coding
AT1TE10090	chr1:003109319	0.0	C/3109319-3109710	AT1TE10090 transposable_element AT1TE10090 ID=AT1TE10090; Name=AT1TE10090; Alias=ATMU6N1
AT1G04707.1	chr1:003111746	0.0	C/3111746-3112619	AT1G04707.1 antisense_lncRNA AT1G04707 ID=AT1G04707.1; Parent=AT1G04707; Name=AT1G04707.1; description=Natural antisense transcript overlaps with AT1G09610; Note=Natural antisense transcript overlaps with AT1G09610; locus_type=antisense_long_noncoding_rna
AT1G09610.1	chr1:003111789	0.0	W/3111789-3112637	AT1G09610.1 CDS AT1G09610 ID=AT1G09610.1; Parent=AT1G09610; Name=AT1G09610.1; Note=glucuronoxylan 4-O-methyltransferase-like protein (DUF579); conf_class=1; symbol=GXM3; full_name=glucuronoxylan methyltransferase 3; computational_description=Protein of unknown function (DUF579)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 8 plant structures%3B EXPRESSED DURING: 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF579 (InterPro:IPR021148)%2C Conserved hypothetical protein CHP01627 (InterPro:IPR006514)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF579) (TAIR:AT4G09990.1)%3B Has 252 Blast hits to 251 proteins in 20 species: Archae - 0%3B Bacteria - 5%3B Metazoa - 0%3B Fungi - 0%3B Plants - 240%3B Viruses - 0%3B Other Eukaryotes - 7 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15980264, PMID:18467456, PMID:19325888, PMID:23045523, PMID:24576763, locus:2012350; locus_type=protein_coding
AT1G09620.1	chr1:003113077	0.0	C/3113077-3113101,3113205-3116455	AT1G09620.1 CDS AT1G09620 ID=AT1G09620.1; Parent=AT1G09620; Name=AT1G09620.1; Note=ATP binding/leucine-tRNA ligases/aminoacyl-tRNA ligase; conf_class=2; computational_description=ATP binding%3Bleucine-tRNA ligases%3Baminoacyl-tRNA ligases%3Bnucleotide binding%3BATP binding%3Baminoacyl-tRNA ligases%3B FUNCTIONS IN: nucleotide binding%2C aminoacyl-tRNA ligase activity%2C leucine-tRNA ligase activity%2C ATP binding%3B INVOLVED IN: leucyl-tRNA aminoacylation%2C translation%2C tRNA aminoacylation for protein translation%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase%2C class I%2C conserved site (InterPro:IPR001412)%2C Aminoacyl-tRNA synthetase%2C class 1a%2C anticodon-binding (InterPro:IPR009080)%2C Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729)%2C Valyl/Leucyl/Isoleucyl-tRNA synthetase%2C class I%2C anticodon-binding (InterPro:IPR013155)%2C Valyl/Leucyl/Isoleucyl-tRNA synthetase%2C class Ia%2C editing (InterPro:IPR009008)%2C Aminoacyl-tRNA synthetase%2C class Ia (InterPro:IPR002300)%2C Leucyl-tRNA synthetase%2C class Ia%2C archaeal/eukaryotic cytosolic (InterPro:IPR004493)%3B BEST Arabidopsis thaliana protein match is: tRNA synthetase class I (I%2C L%2C M and V) family protein (TAIR:AT4G04350.1)%3B Has 16931 Blast hits to 15894 proteins in 2953 species: Archae - 757%3B Bacteria - 11010%3B Metazoa - 639%3B Fungi - 488%3B Plants - 264%3B Viruses - 0%3B Other Eukaryotes - 3773 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16251277, PMID:16297076, PMID:23148892, locus:2012240; locus_type=protein_coding
AT1G09625.1	chr1:003117343	0.0	C/3117343-3117567	AT1G09625.1 CDS AT1G09625 ID=AT1G09625.1; Parent=AT1G09625; Name=AT1G09625.1; Note=transmembrane protein; conf_class=1; computational_description=unknown protein%3B LOCATED IN: endomembrane system%3B Has 4 Blast hits to 4 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 4%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:4010713423; locus_type=protein_coding
AT1G09630.1	chr1:003118350	0.0	C/3118350-3118838,3119407-3119571	AT1G09630.1 CDS AT1G09630 ID=AT1G09630.1; Parent=AT1G09630; Name=AT1G09630.1; Note=RAB GTPase 11C; curator_summary=Encodes a putative GTP-binding protein. Associates with organelles on a pathway from the Golgi to the plasma membrane in interphase. In dividing cells acts at the cell plate.; conf_class=2; symbol=RAB11c; Alias=ATRAB-A2A, ARABIDOPSIS RAB GTPASE A2A, ATRAB11C, RAB GTPase 11C, ATRABA2A, ARABIDOPSIS RAB GTPASE A2A, RAB-A2A, RAB GTPASE A2A; full_name=RAB GTPase 11C; computational_description=RAB GTPase 11C (RAB11c)%3B FUNCTIONS IN: GTP binding%3B INVOLVED IN: cytokinesis%3B LOCATED IN: endosome%2C plasma membrane%2C cell plate%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806)%2C Small GTP-binding protein (InterPro:IPR005225)%2C Small GTPase (InterPro:IPR020851)%2C Ras (InterPro:IPR013753)%2C Ras small GTPase%2C Rab type (InterPro:IPR003579)%2C Rab11-related (InterPro:IPR015595)%3B BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A2B (TAIR:AT1G07410.1)%3B Has 27576 Blast hits to 27520 proteins in 758 species: Archae - 26%3B Bacteria - 154%3B Metazoa - 14618%3B Fungi - 3770%3B Plants - 3044%3B Viruses - 20%3B Other Eukaryotes - 5944 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12644670, PMID:16553894, PMID:18239134, locus:2024276; locus_type=protein_coding
AT1G09640.1	chr1:003120162	0.0	W/3120162-3120170,3120388-3120537,3120626-3120686,3120787-3120839,3120959-3121060,3121171-3121660,3121773-3122152	AT1G09640.1 CDS AT1G09640 ID=AT1G09640.1; Parent=AT1G09640; Name=AT1G09640.1; Note=Translation elongation factor EF1B%2C gamma chain; conf_class=2; computational_description=Translation elongation factor EF1B%2C gamma chain%3B FUNCTIONS IN: translation elongation factor activity%3B INVOLVED IN: translational elongation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: male gametophyte%2C cultured cell%2C pollen tube%2C leaf%2C seed%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C seed development stages%3B CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335)%2C Glutathione S-transferase%2C C-terminal (InterPro:IPR004046)%2C Glutathione S-transferase/chloride channel%2C C-terminal (InterPro:IPR017933)%2C Glutathione S-transferase%2C N-terminal (InterPro:IPR004045)%2C Glutathione S-transferase%2C C-terminal-like (InterPro:IPR010987)%2C Translation elongation factor EF1B%2C gamma chain%2C conserved (InterPro:IPR001662)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B BEST Arabidopsis thaliana protein match is: Translation elongation factor EF1B%2C gamma chain (TAIR:AT1G57720.2)%3B Has 8999 Blast hits to 8983 proteins in 1311 species: Archae - 2%3B Bacteria - 4523%3B Metazoa - 1774%3B Fungi - 604%3B Plants - 732%3B Viruses - 0%3B Other Eukaryotes - 1364 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14500793, PMID:15047896, PMID:15908592, PMID:16460505, PMID:16679420, PMID:17828791, PMID:18775970, PMID:20118269, locus:2024311; locus_type=protein_coding
AT1G09640.2	chr1:003120162	0.0	W/3120162-3120170,3120388-3120537,3120626-3120686,3120787-3120839,3120959-3121060,3121171-3121398,3121958-3122152	AT1G09640.2 CDS AT1G09640 ID=AT1G09640.2; Parent=AT1G09640; Name=AT1G09640.2; Note=Translation elongation factor EF1B%2C gamma chain; conf_class=1; computational_description=Translation elongation factor EF1B%2C gamma chain%3B FUNCTIONS IN: translation elongation factor activity%3B INVOLVED IN: translational elongation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: male gametophyte%2C cultured cell%2C pollen tube%2C leaf%2C seed%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C seed development stages%3B CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335)%2C Glutathione S-transferase%2C C-terminal (InterPro:IPR004046)%2C Glutathione S-transferase/chloride channel%2C C-terminal (InterPro:IPR017933)%2C Glutathione S-transferase%2C N-terminal (InterPro:IPR004045)%2C Glutathione S-transferase%2C C-terminal-like (InterPro:IPR010987)%2C Translation elongation factor EF1B%2C gamma chain%2C conserved (InterPro:IPR001662)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B BEST Arabidopsis thaliana protein match is: Translation elongation factor EF1B%2C gamma chain (TAIR:AT1G57720.2)%3B Has 8999 Blast hits to 8983 proteins in 1311 species: Archae - 2%3B Bacteria - 4523%3B Metazoa - 1774%3B Fungi - 604%3B Plants - 732%3B Viruses - 0%3B Other Eukaryotes - 1364 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14500793, PMID:15047896, PMID:15908592, PMID:16460505, PMID:16679420, PMID:17828791, PMID:18775970, PMID:20118269, locus:2024311; locus_type=protein_coding
AT1G09645.1	chr1:003123155	0.0	W/3123155-3123236,3124109-3124347	AT1G09645.1 CDS AT1G09645 ID=AT1G09645.1; Parent=AT1G09645; Name=AT1G09645.1; Note=transmembrane protein; conf_class=2; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G57765.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:504956278; locus_type=protein_coding
AT1TE10140	chr1:003124790	0.0	C/3124790-3125010	AT1TE10140 transposable_element AT1TE10140 ID=AT1TE10140; Name=AT1TE10140; Alias=ATLINE1_3A
AT1G04713.1	chr1:003125307	0.0	C/3125307-3125609	AT1G04713.1 lnc_RNA AT1G04713 ID=AT1G04713.1; Parent=AT1G04713; Name=AT1G04713.1; locus_type=long_noncoding_rna
AT1G09650.1	chr1:003125978	0.0	W/3125978-3127126	AT1G09650.1 CDS AT1G09650 ID=AT1G09650.1; Parent=AT1G09650; Name=AT1G09650.1; Note=F-box and associated interaction domains-containing protein; conf_class=4; computational_description=F-box and associated interaction domains-containing protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: response to chitin%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: cultured cell%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%2C F-box associated domain%2C type 1 (InterPro:IPR006527)%2C F-box associated interaction domain (InterPro:IPR017451)%3B BEST Arabidopsis thaliana protein match is: F-box associated ubiquitination effector family protein (TAIR:AT1G12490.1)%3B Has 1173 Blast hits to 1151 proteins in 42 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 11%3B Fungi - 0%3B Plants - 1160%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:17722694, PMID:20032078, PMID:20736450, locus:2024437; locus_type=protein_coding
AT1G09660.1	chr1:003128032	0.0	C/3128032-3128187,3128259-3128402,3128851-3128967,3129044-3129181,3129304-3129428,3130100-3130185,3130661-3130791	AT1G09660.1 CDS AT1G09660 ID=AT1G09660.1; Parent=AT1G09660; Name=AT1G09660.1; Note=RNA-binding KH domain-containing protein; conf_class=2; computational_description=RNA-binding KH domain-containing protein%3B FUNCTIONS IN: RNA binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087)%3B BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT4G26480.1)%3B Has 1343 Blast hits to 1342 proteins in 223 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 810%3B Fungi - 168%3B Plants - 277%3B Viruses - 0%3B Other Eukaryotes - 88 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11809873, locus:2024326; locus_type=protein_coding
AT1G09660.3	chr1:003128032	0.0	C/3128032-3128187,3128259-3128402,3128851-3128967,3129044-3129181,3129304-3129428,3130100-3130185,3130661-3130791	AT1G09660.3 CDS AT1G09660 ID=AT1G09660.3; Parent=AT1G09660; Name=AT1G09660.3; Note=RNA-binding KH domain-containing protein; Dbxref=PMID:11809873, locus:2024326; computational_description=RNA-binding KH domain-containing protein%3B FUNCTIONS IN: RNA binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087)%3B BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT4G26480.1)%3B Has 1343 Blast hits to 1342 proteins in 223 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 810%3B Fungi - 168%3B Plants - 277%3B Viruses - 0%3B Other Eukaryotes - 88 (source: NCBI BLink).; locus_type=protein_coding
AT1G09660.2	chr1:003128205	0.0	C/3128205-3128402,3128851-3128967,3129044-3129181,3129304-3129428,3130100-3130185,3130661-3130791	AT1G09660.2 CDS AT1G09660 ID=AT1G09660.2; Parent=AT1G09660; Name=AT1G09660.2; Note=RNA-binding KH domain-containing protein; conf_class=2; computational_description=RNA-binding KH domain-containing protein%3B FUNCTIONS IN: RNA binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087)%3B BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT4G26480.1)%3B Has 1343 Blast hits to 1342 proteins in 223 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 810%3B Fungi - 168%3B Plants - 277%3B Viruses - 0%3B Other Eukaryotes - 88 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11809873, locus:2024326; locus_type=protein_coding
AT1G04717.1	chr1:003131952	0.0	C/3131952-3132215	AT1G04717.1 lnc_RNA AT1G04717 ID=AT1G04717.1; Parent=AT1G04717; Name=AT1G04717.1; locus_type=long_noncoding_rna
AT1G09665.1	chr1:003133095	0.0	W/3133095-3133555,3133638-3133674	AT1G09665.1 CDS AT1G09665 ID=AT1G09665.1; Parent=AT1G09665; Name=AT1G09665.1; Note=Toll-Interleukin-Resistance (TIR) domain family protein; conf_class=9; computational_description=Toll-Interleukin-Resistance (TIR) domain family protein%3B FUNCTIONS IN: transmembrane receptor activity%3B INVOLVED IN: defense response signaling pathway%2C resistance gene-dependent%2C signal transduction%2C defense response%2C innate immune response%3B LOCATED IN: intrinsic to membrane%3B CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157)%3B BEST Arabidopsis thaliana protein match is: Toll-Interleukin-Resistance (TIR) domain family protein (TAIR:AT2G03300.1)%3B Has 1586 Blast hits to 1524 proteins in 45 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1586%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*; Dbxref=locus:504956277; locus_type=protein_coding
AT1G09680.1	chr1:003134107	0.0	C/3134107-3135930	AT1G09680.1 CDS AT1G09680 ID=AT1G09680.1; Parent=AT1G09680; Name=AT1G09680.1; Note=Pentatricopeptide repeat (PPR) superfamily protein; conf_class=4; computational_description=Pentatricopeptide repeat (PPR) superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G39710.1)%3B Has 56278 Blast hits to 14858 proteins in 304 species: Archae - 3%3B Bacteria - 59%3B Metazoa - 821%3B Fungi - 925%3B Plants - 52616%3B Viruses - 0%3B Other Eukaryotes - 1854 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:20736450, PMID:21908688, locus:2024367; locus_type=protein_coding
AT1G09690.1	chr1:003136407	0.0	C/3136407-3136664,3137194-3137430	AT1G09690.1 CDS AT1G09690 ID=AT1G09690.1; Parent=AT1G09690; Name=AT1G09690.1; Note=Translation protein SH3-like family protein; conf_class=2; computational_description=Translation protein SH3-like family protein%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%3B LOCATED IN: ribosome%2C cytosolic large ribosomal subunit%3B EXPRESSED IN: juvenile leaf%2C pollen tube%3B CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991)%2C Ribosomal protein L21e (InterPro:IPR001147)%2C Ribosomal protein L21e%2C conserved site (InterPro:IPR018259)%3B BEST Arabidopsis thaliana protein match is: Translation protein SH3-like family protein (TAIR:AT1G09590.1)%3B Has 1439 Blast hits to 1439 proteins in 381 species: Archae - 214%3B Bacteria - 0%3B Metazoa - 709%3B Fungi - 179%3B Plants - 136%3B Viruses - 0%3B Other Eukaryotes - 201 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11598216, PMID:14500793, PMID:14551330, PMID:17934214, PMID:18650403, PMID:18775970, locus:2024387; locus_type=protein_coding
AT1G09700.1	chr1:003137960	0.0	C/3137960-3138931,3139335-3139597,3140094-3140118	AT1G09700.1 CDS AT1G09700 ID=AT1G09700.1; Parent=AT1G09700; Name=AT1G09700.1; Note=dsRNA-binding domain-like superfamily protein; curator_summary=Encodes a nuclear dsRNA binding protein. Involved in mRNA cleavage. The mutant is characterized by shorter stature%2C delayed flowering%2C leaf hyponasty%2C reduced fertility%2C decreased rate of root growth%2C and an altered root gravitropic response. It also exhibits less sensitivity to auxin and cytokinin.; conf_class=2; symbol=HYL1; Alias=AtDRB1, DRB1, DSRNA-BINDING PROTEIN 1; full_name=HYPONASTIC LEAVES 1; computational_description=HYPONASTIC LEAVES 1 (HYL1)%3B CONTAINS InterPro DOMAIN/s: Double-stranded RNA-binding (InterPro:IPR001159)%2C Double-stranded RNA-binding-like (InterPro:IPR014720)%3B BEST Arabidopsis thaliana protein match is: dsRNA-binding protein 2 (TAIR:AT2G28380.1)%3B Has 992 Blast hits to 893 proteins in 320 species: Archae - 14%3B Bacteria - 506%3B Metazoa - 117%3B Fungi - 6%3B Plants - 270%3B Viruses - 0%3B Other Eukaryotes - 79 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11148283, PMID:12434021, PMID:12427994, PMID:14722360, PMID:14972688, PMID:15131082, PMID:15469823, PMID:15580355, PMID:15851028, PMID:15821876, PMID:16428603, PMID:16682354, PMID:16889646, PMID:17337628, PMID:17369351, PMID:17442570, PMID:17675322, PMID:18003861, PMID:18550839, PMID:18632569, PMID:18625233, PMID:18714403, PMID:18829588, PMID:19304749, PMID:17071740, PMID:18551175, PMID:19155326, PMID:19436261, PMID:19633021, PMID:19861421, PMID:20106953, PMID:20462493, PMID:20668032, PMID:21685453, PMID:21610018, PMID:22268150, PMID:22474216, PMID:22545148, PMID:22623415, PMID:22902697, PMID:23071326, PMID:23268445, PMID:23424246, PMID:23399598, PMID:23141542, PMID:23886622, PMID:23941160, PMID:23918970, PMID:24137006, PMID:24030553, PMID:25417716, PMID:25409478, PMID:25532508, PMID:25491479, PMID:25680966, locus:2024407; locus_type=protein_coding
AT1G09700.2	chr1:003137960	0.0	C/3137960-3138001,3138422-3138931,3139335-3139597,3140094-3140118	AT1G09700.2 CDS AT1G09700 ID=AT1G09700.2; Parent=AT1G09700; Name=AT1G09700.2; Note=dsRNA-binding domain-like superfamily protein; symbol=HYL1; Alias=AtDRB1, DRB1, DSRNA-BINDING PROTEIN 1; full_name=HYPONASTIC LEAVES 1; curator_summary=Encodes a nuclear dsRNA binding protein. Involved in mRNA cleavage. The mutant is characterized by shorter stature%2C delayed flowering%2C leaf hyponasty%2C reduced fertility%2C decreased rate of root growth%2C and an altered root gravitropic response. It also exhibits less sensitivity to auxin and cytokinin.; computational_description=HYPONASTIC LEAVES 1 (HYL1)%3B CONTAINS InterPro DOMAIN/s: Double-stranded RNA-binding (InterPro:IPR001159)%2C Double-stranded RNA-binding-like (InterPro:IPR014720)%3B BEST Arabidopsis thaliana protein match is: dsRNA-binding protein 2 (TAIR:AT2G28380.1)%3B Has 992 Blast hits to 893 proteins in 320 species: Archae - 14%3B Bacteria - 506%3B Metazoa - 117%3B Fungi - 6%3B Plants - 270%3B Viruses - 0%3B Other Eukaryotes - 79 (source: NCBI BLink).; Dbxref=PMID:11148283, PMID:12434021, PMID:12427994, PMID:14722360, PMID:14972688, PMID:15131082, PMID:15469823, PMID:15580355, PMID:15851028, PMID:15821876, PMID:16428603, PMID:16682354, PMID:16889646, PMID:17337628, PMID:17369351, PMID:17442570, PMID:17675322, PMID:18003861, PMID:18550839, PMID:18632569, PMID:18625233, PMID:18714403, PMID:18829588, PMID:19304749, PMID:17071740, PMID:18551175, PMID:19155326, PMID:19436261, PMID:19633021, PMID:19861421, PMID:20106953, PMID:20462493, PMID:20668032, PMID:21685453, PMID:21610018, PMID:22268150, PMID:22474216, PMID:22545148, PMID:22623415, PMID:22902697, PMID:23071326, PMID:23268445, PMID:23424246, PMID:23399598, PMID:23141542, PMID:23886622, PMID:23941160, PMID:23918970, PMID:24137006, PMID:24030553, PMID:25417716, PMID:25409478, PMID:25532508, PMID:25491479, PMID:25680966, locus:2024407; locus_type=protein_coding
AT1TE10190	chr1:003140347	0.0	W/3140347-3140718	AT1TE10190 transposable_element AT1TE10190 ID=AT1TE10190; Name=AT1TE10190; Alias=HELITRONY1B
AT1G09710.1	chr1:003141119	0.0	W/3141119-3141198,3141294-3141483,3141745-3141831,3142030-3142398,3142930-3143074,3143271-3144232	AT1G09710.1 CDS AT1G09710 ID=AT1G09710.1; Parent=AT1G09710; Name=AT1G09710.1; Note=Homeodomain-like superfamily protein; conf_class=2; computational_description=Homeodomain-like superfamily protein%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: regulation of transcription%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%2C Homeodomain-related (InterPro:IPR012287)%2C Myb transcription factor (InterPro:IPR015495)%3B BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT1G58220.1)%3B Has 2083 Blast hits to 515 proteins in 153 species: Archae - 0%3B Bacteria - 81%3B Metazoa - 329%3B Fungi - 153%3B Plants - 69%3B Viruses - 0%3B Other Eukaryotes - 1451 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16463103, locus:2024266; locus_type=protein_coding
AT1G09710.2	chr1:003141119	0.0	W/3141119-3141198,3141294-3141483,3141745-3141831,3142030-3142398,3142930-3143194,3143271-3144232	AT1G09710.2 CDS AT1G09710 ID=AT1G09710.2; Parent=AT1G09710; Name=AT1G09710.2; Note=Homeodomain-like superfamily protein; conf_class=6; computational_description=Homeodomain-like superfamily protein%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: regulation of transcription%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%2C Homeodomain-related (InterPro:IPR012287)%2C Myb transcription factor (InterPro:IPR015495)%3B BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT1G58220.1)%3B Has 2083 Blast hits to 515 proteins in 153 species: Archae - 0%3B Bacteria - 81%3B Metazoa - 329%3B Fungi - 153%3B Plants - 69%3B Viruses - 0%3B Other Eukaryotes - 1451 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:16463103, locus:2024266; locus_type=protein_coding
AT1G09710.4	chr1:003141119	0.0	W/3141119-3141198,3141294-3141483,3141745-3141831,3142030-3142398,3142930-3143074,3143271-3144232	AT1G09710.4 CDS AT1G09710 ID=AT1G09710.4; Parent=AT1G09710; Name=AT1G09710.4; Note=Homeodomain-like superfamily protein; Dbxref=PMID:16463103, locus:2024266; computational_description=Homeodomain-like superfamily protein%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: regulation of transcription%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%2C Homeodomain-related (InterPro:IPR012287)%2C Myb transcription factor (InterPro:IPR015495)%3B BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT1G58220.1)%3B Has 2083 Blast hits to 515 proteins in 153 species: Archae - 0%3B Bacteria - 81%3B Metazoa - 329%3B Fungi - 153%3B Plants - 69%3B Viruses - 0%3B Other Eukaryotes - 1451 (source: NCBI BLink).; locus_type=protein_coding
AT1G09710.3	chr1:003141301	0.0	W/3141301-3141483,3141745-3141831,3142030-3142398,3142930-3143074,3143271-3144232	AT1G09710.3 CDS AT1G09710 ID=AT1G09710.3; Parent=AT1G09710; Name=AT1G09710.3; Note=Homeodomain-like superfamily protein; computational_description=Homeodomain-like superfamily protein%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: regulation of transcription%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%2C Homeodomain-related (InterPro:IPR012287)%2C Myb transcription factor (InterPro:IPR015495)%3B BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT1G58220.1)%3B Has 2083 Blast hits to 515 proteins in 153 species: Archae - 0%3B Bacteria - 81%3B Metazoa - 329%3B Fungi - 153%3B Plants - 69%3B Viruses - 0%3B Other Eukaryotes - 1451 (source: NCBI BLink).; Dbxref=PMID:16463103, locus:2024266; locus_type=protein_coding
AT1G09710.5	chr1:003141301	0.0	W/3141301-3141483,3141745-3141831,3142030-3142398,3142930-3143074,3143271-3144232	AT1G09710.5 CDS AT1G09710 ID=AT1G09710.5; Parent=AT1G09710; Name=AT1G09710.5; Note=Homeodomain-like superfamily protein; computational_description=Homeodomain-like superfamily protein%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: regulation of transcription%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%2C Homeodomain-related (InterPro:IPR012287)%2C Myb transcription factor (InterPro:IPR015495)%3B BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT1G58220.1)%3B Has 2083 Blast hits to 515 proteins in 153 species: Archae - 0%3B Bacteria - 81%3B Metazoa - 329%3B Fungi - 153%3B Plants - 69%3B Viruses - 0%3B Other Eukaryotes - 1451 (source: NCBI BLink).; Dbxref=PMID:16463103, locus:2024266; locus_type=protein_coding
AT1G09720.1	chr1:003144438	0.0	C/3144438-3147130,3147210-3147303	AT1G09720.1 CDS AT1G09720 ID=AT1G09720.1; Parent=AT1G09720; Name=AT1G09720.1; Note=Kinase interacting (KIP1-like) family protein; conf_class=4; symbol=NET2B; full_name=Networked 2B; computational_description=Kinase interacting (KIP1-like) family protein%3B CONTAINS InterPro DOMAIN/s: KIP1-like (InterPro:IPR011684)%3B BEST Arabidopsis thaliana protein match is: kinase interacting family protein (TAIR:AT1G58210.1)%3B Has 36531 Blast hits to 24166 proteins in 1497 species: Archae - 615%3B Bacteria - 4202%3B Metazoa - 18004%3B Fungi - 3193%3B Plants - 2001%3B Viruses - 107%3B Other Eukaryotes - 8409 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:14576160, PMID:16632591, PMID:18725200, PMID:18775970, PMID:20226671, PMID:21284606, PMID:22840520, PMID:23791732, locus:2024271; locus_type=protein_coding
AT1G09730.1	chr1:003148017	0.0	C/3148017-3148568,3148658-3149080,3149385-3149504,3150119-3150209,3150464-3150557,3150637-3150692,3150772-3150972,3151160-3151291,3151452-3151508,3151913-3152021,3152521-3152578,3152674-3152871,3153010-3153237,3153321-3153754,3154098-3154236	AT1G09730.1 CDS AT1G09730 ID=AT1G09730.1; Parent=AT1G09730; Name=AT1G09730.1; Note=Cysteine proteinases superfamily protein; conf_class=4; computational_description=Cysteine proteinases superfamily protein%3B FUNCTIONS IN: cysteine-type peptidase activity%3B INVOLVED IN: proteolysis%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase C48%2C SUMO/Sentrin/Ubl1 (InterPro:IPR003653)%3B BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT4G33620.1)%3B Has 1713 Blast hits to 1567 proteins in 224 species: Archae - 4%3B Bacteria - 15%3B Metazoa - 815%3B Fungi - 324%3B Plants - 268%3B Viruses - 7%3B Other Eukaryotes - 280 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:16581939, PMID:16920872, PMID:18775970, locus:2024281; locus_type=protein_coding
AT1G09730.2	chr1:003148017	0.0	C/3148017-3148568,3148658-3149080,3149385-3149504,3150119-3150209,3150464-3150557,3150637-3150692,3150772-3150972,3151160-3151291,3151452-3151508,3151913-3152021,3152521-3152578,3152674-3152871,3153010-3153047,3153144-3153237,3153321-3153754,3154098-3154236	AT1G09730.2 CDS AT1G09730 ID=AT1G09730.2; Parent=AT1G09730; Name=AT1G09730.2; Note=Cysteine proteinases superfamily protein; conf_class=3; computational_description=Cysteine proteinases superfamily protein%3B FUNCTIONS IN: cysteine-type peptidase activity%3B INVOLVED IN: proteolysis%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase C48%2C SUMO/Sentrin/Ubl1 (InterPro:IPR003653)%3B BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT4G33620.1)%3B Has 1713 Blast hits to 1567 proteins in 224 species: Archae - 4%3B Bacteria - 15%3B Metazoa - 815%3B Fungi - 324%3B Plants - 268%3B Viruses - 7%3B Other Eukaryotes - 280 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16581939, PMID:16920872, PMID:18775970, locus:2024281; locus_type=protein_coding
AT1G09740.1	chr1:003154603	0.0	W/3154603-3154804,3154896-3154999,3155217-3155335,3155744-3155834	AT1G09740.1 CDS AT1G09740 ID=AT1G09740.1; Parent=AT1G09740; Name=AT1G09740.1; Note=Adenine nucleotide alpha hydrolases-like superfamily protein; conf_class=2; computational_description=Adenine nucleotide alpha hydrolases-like superfamily protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: response to stress%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 13 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016)%2C Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729)%2C Universal stress protein A (InterPro:IPR006015)%3B BEST Arabidopsis thaliana protein match is: Adenine nucleotide alpha hydrolases-like superfamily protein (TAIR:AT3G11930.1)%3B Has 5950 Blast hits to 5719 proteins in 1218 species: Archae - 487%3B Bacteria - 4382%3B Metazoa - 139%3B Fungi - 81%3B Plants - 701%3B Viruses - 0%3B Other Eukaryotes - 160 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12644671, PMID:12753585, PMID:15235117, PMID:17194768, PMID:18650403, PMID:20736450, locus:2024291; locus_type=protein_coding
AT1G09740.2	chr1:003154603	0.0	W/3154603-3154804,3154896-3154999,3155217-3155335,3155744-3155834	AT1G09740.2 CDS AT1G09740 ID=AT1G09740.2; Parent=AT1G09740; Name=AT1G09740.2; Note=Adenine nucleotide alpha hydrolases-like superfamily protein; Dbxref=PMID:12644671, PMID:12753585, PMID:15235117, PMID:17194768, PMID:18650403, PMID:20736450, locus:2024291; computational_description=Adenine nucleotide alpha hydrolases-like superfamily protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: response to stress%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 13 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016)%2C Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729)%2C Universal stress protein A (InterPro:IPR006015)%3B BEST Arabidopsis thaliana protein match is: Adenine nucleotide alpha hydrolases-like superfamily protein (TAIR:AT3G11930.1)%3B Has 5950 Blast hits to 5719 proteins in 1218 species: Archae - 487%3B Bacteria - 4382%3B Metazoa - 139%3B Fungi - 81%3B Plants - 701%3B Viruses - 0%3B Other Eukaryotes - 160 (source: NCBI BLink).; locus_type=protein_coding
AT1G09750.1	chr1:003157541	0.0	W/3157541-3158593,3158664-3158960	AT1G09750.1 CDS AT1G09750 ID=AT1G09750.1; Parent=AT1G09750; Name=AT1G09750.1; Note=Eukaryotic aspartyl protease family protein; conf_class=2; computational_description=Eukaryotic aspartyl protease family protein%3B FUNCTIONS IN: aspartic-type endopeptidase activity%3B INVOLVED IN: proteolysis%3B LOCATED IN: apoplast%2C cell wall%2C plant-type cell wall%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109)%2C Peptidase aspartic%2C catalytic (InterPro:IPR009007)%2C Peptidase A1 (InterPro:IPR001461)%3B BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT3G54400.1)%3B Has 2762 Blast hits to 2753 proteins in 256 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 415%3B Fungi - 350%3B Plants - 1861%3B Viruses - 0%3B Other Eukaryotes - 134 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12566592, PMID:14697270, PMID:15763661, PMID:15593128, PMID:16640606, PMID:16581911, PMID:18424626, PMID:18650403, PMID:18796151, PMID:24755512, locus:2024306; locus_type=protein_coding
AT1G09760.1	chr1:003159476	0.0	C/3159476-3159481,3159578-3159652,3159752-3159802,3159923-3160081,3160582-3160787,3160888-3161017,3161381-3161421,3161522-3161603	AT1G09760.1 CDS AT1G09760 ID=AT1G09760.1; Parent=AT1G09760; Name=AT1G09760.1; Note=U2 small nuclear ribonucleoprotein A; conf_class=2; symbol=U2A'; Alias=U2A', U2 small nuclear ribonucleoprotein A; full_name=U2 small nuclear ribonucleoprotein A; computational_description=U2 small nuclear ribonucleoprotein A (U2A')%3B INVOLVED IN: nuclear mRNA splicing%2C via spliceosome%2C response to cold%3B LOCATED IN: in 6 components%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: U2A%26apos%3B/phosphoprotein 32 family A%2C C-terminal (InterPro:IPR003603)%3B Has 8109 Blast hits to 6297 proteins in 450 species: Archae - 0%3B Bacteria - 3635%3B Metazoa - 3194%3B Fungi - 303%3B Plants - 219%3B Viruses - 2%3B Other Eukaryotes - 756 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14617066, PMID:15133128, PMID:18315867, PMID:23877244, locus:2024316; locus_type=protein_coding
AT1G09770.1	chr1:003162002	0.0	W/3162002-3162178,3162444-3164162,3164395-3164676,3164766-3165122	AT1G09770.1 CDS AT1G09770 ID=AT1G09770.1; Parent=AT1G09770; Name=AT1G09770.1; Note=cell division cycle 5; curator_summary=Member of MYB3R- and R2R3- type MYB- encoding genes. Essential for plant innate immunity. Interacts with MOS4 and PRL1.; conf_class=2; symbol=CDC5; Alias=ATCDC5, ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5, ATMYBCDC5, ARABIDOPSIS THALIANA MYB DOMAIN CELL DIVISION CYCLE 5; full_name=cell division cycle 5; computational_description=cell division cycle 5 (CDC5)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: defense response signaling pathway%2C resistance gene-independent%2C defense response signaling pathway%2C resistance gene-dependent%2C defense response to bacterium%2C defense response to fungus%2C regulation of transcription%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3351 (InterPro:IPR021786)%2C SANT%2C DNA-binding (InterPro:IPR001005)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb transcription factor (InterPro:IPR015495)%2C Homeodomain-related (InterPro:IPR012287)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%3B BEST Arabidopsis thaliana protein match is: myb domain protein 3r-4 (TAIR:AT5G11510.1)%3B Has 13137 Blast hits to 10813 proteins in 768 species: Archae - 14%3B Bacteria - 356%3B Metazoa - 3570%3B Fungi - 914%3B Plants - 4936%3B Viruses - 8%3B Other Eukaryotes - 3339 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:8917598, PMID:11118137, PMID:11597504, PMID:16463103, PMID:17298883, PMID:17575050, PMID:17768399, PMID:19629177, PMID:20943852, PMID:21851639, PMID:22589469, PMID:24101471, PMID:25474114, locus:2024336; locus_type=protein_coding
AT1G09780.1	chr1:003165550	0.0	C/3165550-3165711,3165798-3165953,3166039-3166134,3166224-3166416,3166583-3167211,3167303-3167581,3167654-3167812	AT1G09780.1 CDS AT1G09780 ID=AT1G09780.1; Parent=AT1G09780; Name=AT1G09780.1; Note=Phosphoglycerate mutase%2C 2%2C3-bisphosphoglycerate-independent; curator_summary=Encodes a 2%2C3-biphosphoglycerate-independent phosphoglycerate mutase that is involved in pollen development and stomatal movement.; conf_class=2; symbol=iPGAM1; full_name=2%2C3-biphosphoglycerate-independent phosphoglycerate mutase 1; computational_description=Phosphoglycerate mutase%2C 2%2C3-bisphosphoglycerate-independent%3B FUNCTIONS IN: manganese ion binding%2C phosphoglycerate mutase activity%2C 2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase activity%2C catalytic activity%2C metal ion binding%3B INVOLVED IN: response to cadmium ion%2C response to cold%3B LOCATED IN: mitochondrial envelope%2C cytosol%2C chloroplast%2C plasma membrane%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Alkaline phosphatase-like%2C alpha/beta/alpha (InterPro:IPR017849)%2C Metalloenzyme (InterPro:IPR006124)%2C BPG-independent PGAM%2C N-terminal (InterPro:IPR011258)%2C Alkaline-phosphatase-like%2C core domain (InterPro:IPR017850)%2C Phosphoglycerate mutase%2C 2%2C3-bisphosphoglycerate-independent (InterPro:IPR005995)%3B BEST Arabidopsis thaliana protein match is: Phosphoglycerate mutase%2C 2%2C3-bisphosphoglycerate-independent (TAIR:AT3G08590.2)%3B Has 4822 Blast hits to 4813 proteins in 1698 species: Archae - 54%3B Bacteria - 3035%3B Metazoa - 34%3B Fungi - 85%3B Plants - 379%3B Viruses - 0%3B Other Eukaryotes - 1235 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12953116, PMID:14576160, PMID:14595688, PMID:15333754, PMID:16247729, PMID:16400686, PMID:16502469, PMID:16463051, PMID:16574749, PMID:16553896, PMID:16679420, PMID:17764576, PMID:17828791, PMID:18433157, PMID:18650403, PMID:18805951, PMID:20118269, PMID:20736450, PMID:21798377, PMID:21813794, PMID:22115780, PMID:23289948, locus:2024357; locus_type=protein_coding
AT1G09790.1	chr1:003168568	0.0	C/3168568-3168869,3168954-3169234,3169327-3169471,3169589-3170045,3170575-3170687,3170753-3170819	AT1G09790.1 CDS AT1G09790 ID=AT1G09790.1; Parent=AT1G09790; Name=AT1G09790.1; Note=COBRA-like protein 6 precursor; conf_class=6; symbol=COBL6; full_name=COBRA-like protein 6 precursor; computational_description=COBRA-like protein 6 precursor (COBL6)%3B CONTAINS InterPro DOMAIN/s: Glycosyl-phosphatidyl inositol-anchored%2C plant (InterPro:IPR006918)%2C COBRA-like (InterPro:IPR017391)%3B BEST Arabidopsis thaliana protein match is: COBRA-like protein 1 precursor (TAIR:AT3G02210.1)%3B Has 376 Blast hits to 369 proteins in 30 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 376%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:12068095, PMID:12376623, PMID:12805588, PMID:14671020, PMID:15539473, PMID:16790430, PMID:20226671, locus:2024377; locus_type=protein_coding
AT1G09790.2	chr1:003168568	0.0	C/3168568-3168869,3168954-3169234,3169327-3169471,3169589-3170045,3170575-3170654,3170753-3170819	AT1G09790.2 CDS AT1G09790 ID=AT1G09790.2; Parent=AT1G09790; Name=AT1G09790.2; Note=COBRA-like protein 6 precursor; symbol=COBL6; full_name=COBRA-like protein 6 precursor; computational_description=COBRA-like protein 6 precursor (COBL6)%3B CONTAINS InterPro DOMAIN/s: Glycosyl-phosphatidyl inositol-anchored%2C plant (InterPro:IPR006918)%2C COBRA-like (InterPro:IPR017391)%3B BEST Arabidopsis thaliana protein match is: COBRA-like protein 1 precursor (TAIR:AT3G02210.1)%3B Has 376 Blast hits to 369 proteins in 30 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 376%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=PMID:12068095, PMID:12376623, PMID:12805588, PMID:14671020, PMID:15539473, PMID:16790430, PMID:20226671, locus:2024377; locus_type=protein_coding
AT1G09794.1	chr1:003172196	0.0	W/3172196-3172281,3173216-3173321	AT1G09794.1 CDS AT1G09794 ID=AT1G09794.1; Parent=AT1G09794; Name=AT1G09794.1; Note=Cox19 family protein (CHCH motif); conf_class=4; computational_description=Cox19 family protein (CHCH motif)%3B CONTAINS InterPro DOMAIN/s: MTCP1 (InterPro:IPR009069).; conf_rating=***; Dbxref=locus:6530298135; locus_type=protein_coding
AT1G09795.1	chr1:003173588	0.0	W/3173588-3173884,3174454-3174513,3174620-3174733,3174997-3175062,3175141-3175248,3175351-3175434,3175753-3175854,3175942-3176055,3176130-3176210,3176305-3176424,3176595-3176690	AT1G09795.1 CDS AT1G09795 ID=AT1G09795.1; Parent=AT1G09795; Name=AT1G09795.1; Note=ATP phosphoribosyl transferase 2; curator_summary=ATP phosphoribosyl transferase%2C catalyses first step of histidine biosynthesis; conf_class=1; symbol=ATP-PRT2; Alias=ATATP-PRT2, ATP phosphoribosyl transferase 2, HISN1B; full_name=ATP phosphoribosyl transferase 2; computational_description=ATP phosphoribosyl transferase 2 (ATP-PRT2)%3B FUNCTIONS IN: ATP phosphoribosyltransferase activity%3B INVOLVED IN: histidine biosynthetic process%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Histidine biosynthesis HisG: ATP phosphoribosyltransferase (InterPro:IPR001348)%2C ATP phosphoribosyltransferase%2C conserved site (InterPro:IPR018198)%2C ATP phosphoribosyltransferase%2C catalytic domain (InterPro:IPR013820)%2C Histidine biosynthesis HisG%2C C-terminal (InterPro:IPR013115)%2C Nitrogen regulatory PII-like%2C alpha/beta (InterPro:IPR011322)%3B BEST Arabidopsis thaliana protein match is: ATP phosphoribosyl transferase 1 (TAIR:AT1G58080.1)%3B Has 6354 Blast hits to 6354 proteins in 2167 species: Archae - 206%3B Bacteria - 4075%3B Metazoa - 2%3B Fungi - 141%3B Plants - 71%3B Viruses - 0%3B Other Eukaryotes - 1859 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:10712555, PMID:15923352, PMID:16547652, PMID:17434988, PMID:18650403, PMID:18854047, locus:505006113; locus_type=protein_coding
AT1G04723.1	chr1:003173866	0.0	C/3173866-3174422	AT1G04723.1 antisense_lncRNA AT1G04723 ID=AT1G04723.1; Parent=AT1G04723; Name=AT1G04723.1; description=Natural antisense transcript overlaps with AT1G09795; Note=Natural antisense transcript overlaps with AT1G09795; locus_type=antisense_long_noncoding_rna
AT1G09800.1	chr1:003177121	0.0	C/3177121-3177218,3177321-3177381,3177598-3177867,3178390-3178452,3178589-3178688,3178830-3178912,3179152-3179205,3179473-3179550,3179845-3179901,3180082-3180336	AT1G09800.1 CDS AT1G09800 ID=AT1G09800.1; Parent=AT1G09800; Name=AT1G09800.1; Note=Pseudouridine synthase family protein; conf_class=2; computational_description=Pseudouridine synthase family protein%3B FUNCTIONS IN: pseudouridine synthase activity%3B INVOLVED IN: pseudouridine synthesis%2C RNA modification%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 14 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Pseudouridine synthase%2C catalytic domain (InterPro:IPR020103)%2C Pseudouridine synthase I%2C TruA%2C N-terminal (InterPro:IPR020094)%2C Pseudouridine synthase I%2C TruA%2C alpha/beta domain (InterPro:IPR020097)%2C Pseudouridine synthase I%2C TruA%2C C-terminal (InterPro:IPR020095)%2C Pseudouridine synthase I%2C TruA (InterPro:IPR001406)%3B BEST Arabidopsis thaliana protein match is: Pseudouridine synthase family protein (TAIR:AT3G06950.1)%3B Has 10187 Blast hits to 8452 proteins in 2593 species: Archae - 98%3B Bacteria - 6891%3B Metazoa - 134%3B Fungi - 4%3B Plants - 112%3B Viruses - 0%3B Other Eukaryotes - 2948 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16510518, PMID:18599582, locus:2024397; locus_type=protein_coding
AT1G09800.2	chr1:003177121	0.0	C/3177121-3177218,3177321-3177381,3177598-3177867,3178390-3178452,3178589-3178688,3178830-3178912,3179152-3179205,3179473-3179550,3179845-3179908,3180089-3180336	AT1G09800.2 CDS AT1G09800 ID=AT1G09800.2; Parent=AT1G09800; Name=AT1G09800.2; Note=Pseudouridine synthase family protein; Dbxref=PMID:16510518, PMID:18599582, locus:2024397; computational_description=Pseudouridine synthase family protein%3B FUNCTIONS IN: pseudouridine synthase activity%3B INVOLVED IN: pseudouridine synthesis%2C RNA modification%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 14 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Pseudouridine synthase%2C catalytic domain (InterPro:IPR020103)%2C Pseudouridine synthase I%2C TruA%2C N-terminal (InterPro:IPR020094)%2C Pseudouridine synthase I%2C TruA%2C alpha/beta domain (InterPro:IPR020097)%2C Pseudouridine synthase I%2C TruA%2C C-terminal (InterPro:IPR020095)%2C Pseudouridine synthase I%2C TruA (InterPro:IPR001406)%3B BEST Arabidopsis thaliana protein match is: Pseudouridine synthase family protein (TAIR:AT3G06950.1)%3B Has 10187 Blast hits to 8452 proteins in 2593 species: Archae - 98%3B Bacteria - 6891%3B Metazoa - 134%3B Fungi - 4%3B Plants - 112%3B Viruses - 0%3B Other Eukaryotes - 2948 (source: NCBI BLink).; locus_type=protein_coding
AT1G04733.1	chr1:003180548	0.0	C/3180548-3180736	AT1G04733.1 snRNA AT1G04733 ID=AT1G04733.1; Parent=AT1G04733; Name=AT1G04733.1; Note=U2; symbol=U2-11; Dbxref=PMID:15575968; Alias=U2.11; locus_type=small_nuclear_rna
AT1G09810.1	chr1:003181138	0.0	C/3181138-3181299,3181402-3181788,3181880-3182353,3182478-3182663,3182753-3182817,3182999-3183047,3183129-3183190,3183327-3183354	AT1G09810.1 CDS AT1G09810 ID=AT1G09810.1; Parent=AT1G09810; Name=AT1G09810.1; Note=evolutionarily conserved C-terminal region 11; conf_class=4; symbol=ECT11; full_name=evolutionarily conserved C-terminal region 11; computational_description=evolutionarily conserved C-terminal region 11 (ECT11)%3B CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275)%3B BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 8 (TAIR:AT1G79270.1)%3B Has 926 Blast hits to 916 proteins in 151 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 416%3B Fungi - 98%3B Plants - 333%3B Viruses - 0%3B Other Eukaryotes - 79 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:16113215, locus:2024286; locus_type=protein_coding
AT1G09810.2	chr1:003181138	0.0	C/3181138-3181299,3181402-3181788,3181880-3182353,3182478-3182663,3182753-3182830	AT1G09810.2 CDS AT1G09810 ID=AT1G09810.2; Parent=AT1G09810; Name=AT1G09810.2; Note=evolutionarily conserved C-terminal region 11; symbol=ECT11; full_name=evolutionarily conserved C-terminal region 11; computational_description=evolutionarily conserved C-terminal region 11 (ECT11)%3B CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275)%3B BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 8 (TAIR:AT1G79270.1)%3B Has 926 Blast hits to 916 proteins in 151 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 416%3B Fungi - 98%3B Plants - 333%3B Viruses - 0%3B Other Eukaryotes - 79 (source: NCBI BLink).; Dbxref=PMID:16113215, locus:2024286; locus_type=protein_coding
AT1G09810.3	chr1:003181138	0.0	C/3181138-3181299,3181402-3181788,3181880-3182353,3182478-3182663,3182753-3182817,3182999-3183080	AT1G09810.3 CDS AT1G09810 ID=AT1G09810.3; Parent=AT1G09810; Name=AT1G09810.3; Note=evolutionarily conserved C-terminal region 11; symbol=ECT11; full_name=evolutionarily conserved C-terminal region 11; computational_description=evolutionarily conserved C-terminal region 11 (ECT11)%3B CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275)%3B BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 8 (TAIR:AT1G79270.1)%3B Has 926 Blast hits to 916 proteins in 151 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 416%3B Fungi - 98%3B Plants - 333%3B Viruses - 0%3B Other Eukaryotes - 79 (source: NCBI BLink).; Dbxref=PMID:16113215, locus:2024286; locus_type=protein_coding
AT1G09812.1	chr1:003187817	0.0	W/3187817-3188077,3188455-3188580	AT1G09812.1 CDS AT1G09812 ID=AT1G09812.1; Parent=AT1G09812; Name=AT1G09812.1; Note=multidrug resistance protein; conf_class=1; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G58007.2)%3B Has 93 Blast hits to 93 proteins in 13 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 93%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:504956276; locus_type=protein_coding
AT1G09815.1	chr1:003189460	0.0	W/3189460-3189640,3189857-3190050	AT1G09815.1 CDS AT1G09815 ID=AT1G09815.1; Parent=AT1G09815; Name=AT1G09815.1; Note=polymerase delta 4; conf_class=2; symbol=POLD4; full_name=polymerase delta 4; computational_description=polymerase delta 4 (POLD4)%3B FUNCTIONS IN: DNA-directed DNA polymerase activity%3B INVOLVED IN: DNA replication%3B LOCATED IN: nucleus%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: DNA polymerase delta%2C subunit 4 (InterPro:IPR007218)%3B Has 212 Blast hits to 212 proteins in 91 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 52%3B Fungi - 86%3B Plants - 65%3B Viruses - 0%3B Other Eukaryotes - 9 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12969430, PMID:17227549, PMID:17556508, PMID:18650403, PMID:18775970, locus:505006114; locus_type=protein_coding
AT1G09820.1	chr1:003190594	0.0	C/3190594-3192414	AT1G09820.1 CDS AT1G09820 ID=AT1G09820.1; Parent=AT1G09820; Name=AT1G09820.1; Note=Pentatricopeptide repeat (PPR-like) superfamily protein; conf_class=4; computational_description=Pentatricopeptide repeat (PPR-like) superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G39710.1)%3B Has 57260 Blast hits to 15041 proteins in 306 species: Archae - 1%3B Bacteria - 71%3B Metazoa - 917%3B Fungi - 972%3B Plants - 53378%3B Viruses - 0%3B Other Eukaryotes - 1921 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:24023856, locus:2024301; locus_type=protein_coding
AT1G09830.1	chr1:003192783	0.0	C/3192783-3193202,3193291-3193821,3194177-3194550,3194663-3194936	AT1G09830.1 CDS AT1G09830 ID=AT1G09830.1; Parent=AT1G09830; Name=AT1G09830.1; Note=Glycinamide ribonucleotide (GAR) synthetase; curator_summary=glycinamide ribonucleotide synthetase (GAR synthetase) that catalyzes the conversion of phosphoribosyl amine to phosphoribosyl glycineamide; conf_class=2; symbol=PUR2; full_name=purine biosynthesis 2; computational_description=Glycinamide ribonucleotide (GAR) synthetase%3B FUNCTIONS IN: phosphoribosylamine-glycine ligase activity%3B INVOLVED IN: purine base biosynthetic process%2C purine nucleotide biosynthetic process%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Phosphoribosylglycinamide synthetase%2C conserved site (InterPro:IPR020559)%2C Phosphoribosylglycinamide synthetase%2C C-domain (InterPro:IPR020560)%2C Phosphoribosylglycinamide synthetase%2C ATP-grasp (A) domain (InterPro:IPR020561)%2C ATP-grasp fold%2C subdomain 1 (InterPro:IPR013815)%2C PreATP-grasp-like fold (InterPro:IPR016185)%2C Phosphoribosylglycinamide synthetase%2C N-domain (InterPro:IPR020562)%2C ATP-grasp fold (InterPro:IPR011761)%2C ATP-grasp fold%2C subdomain 2 (InterPro:IPR013816)%2C Pre-ATP-grasp fold (InterPro:IPR013817)%2C Rudiment single hybrid motif (InterPro:IPR011054)%2C Phosphoribosylglycinamide synthetase (InterPro:IPR000115)%3B Has 12648 Blast hits to 12644 proteins in 2666 species: Archae - 340%3B Bacteria - 7373%3B Metazoa - 216%3B Fungi - 226%3B Plants - 88%3B Viruses - 0%3B Other Eukaryotes - 4405 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:7920700, PMID:12897258, PMID:14576160, PMID:15531708, PMID:16258015, locus:2024321; locus_type=protein_coding
AT1G09840.10	chr1:003196114	0.0	C/3196114-3196202,3196515-3196617,3196700-3196783,3197231-3197326,3197596-3197646,3197743-3197883,3197952-3198008,3198443-3198517,3198656-3198928,3199014-3199073,3199161-3199253,3199381-3199524	AT1G09840.10 CDS AT1G09840 ID=AT1G09840.10; Parent=AT1G09840; Name=AT1G09840.10; Note=shaggy-like protein kinase 41; symbol=SK41; Alias=ATSK41, shaggy-like protein kinase 41, AtHIR1, HIR1, hypersensitive induced reaction 1; full_name=shaggy-like protein kinase 41; Dbxref=PMID:12399181, PMID:12376626, PMID:12913170, PMID:14576160, PMID:16007489, PMID:16513634, PMID:18650403, PMID:21477822, PMID:21757708, locus:2024341; computational_description=shaggy-like protein kinase 41 (SK41)%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: shaggy-like kinase 42 (TAIR:AT1G57870.2)%3B Has 102931 Blast hits to 101896 proteins in 3684 species: Archae - 93%3B Bacteria - 10743%3B Metazoa - 37496%3B Fungi - 11700%3B Plants - 24573%3B Viruses - 362%3B Other Eukaryotes - 17964 (source: NCBI BLink).; locus_type=protein_coding
AT1G09840.11	chr1:003196114	0.0	C/3196114-3196202,3196515-3196617,3196700-3196783,3197231-3197326,3197596-3197646,3197743-3197883,3197952-3198008,3198443-3198517,3198656-3198844	AT1G09840.11 CDS AT1G09840 ID=AT1G09840.11; Parent=AT1G09840; Name=AT1G09840.11; Note=shaggy-like protein kinase 41; symbol=SK41; Alias=ATSK41, shaggy-like protein kinase 41, AtHIR1, HIR1, hypersensitive induced reaction 1; full_name=shaggy-like protein kinase 41; computational_description=shaggy-like protein kinase 41 (SK41)%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: shaggy-like kinase 42 (TAIR:AT1G57870.2)%3B Has 102931 Blast hits to 101896 proteins in 3684 species: Archae - 93%3B Bacteria - 10743%3B Metazoa - 37496%3B Fungi - 11700%3B Plants - 24573%3B Viruses - 362%3B Other Eukaryotes - 17964 (source: NCBI BLink).; Dbxref=PMID:12399181, PMID:12376626, PMID:12913170, PMID:14576160, PMID:16007489, PMID:16513634, PMID:18650403, PMID:21477822, PMID:21757708, locus:2024341; locus_type=protein_coding
AT1G09840.1	chr1:003196114	0.0	C/3196114-3196202,3196515-3196617,3196700-3196783,3197231-3197326,3197596-3197646,3197743-3197883,3197952-3198008,3198443-3198517,3198656-3198928,3199014-3199073,3199161-3199253,3199381-3199524	AT1G09840.1 CDS AT1G09840 ID=AT1G09840.1; Parent=AT1G09840; Name=AT1G09840.1; Note=shaggy-like protein kinase 41; conf_class=2; symbol=SK41; Alias=ATSK41, shaggy-like protein kinase 41, AtHIR1, HIR1, hypersensitive induced reaction 1; full_name=shaggy-like protein kinase 41; computational_description=shaggy-like protein kinase 41 (SK41)%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: shaggy-like kinase 42 (TAIR:AT1G57870.2)%3B Has 102931 Blast hits to 101896 proteins in 3684 species: Archae - 93%3B Bacteria - 10743%3B Metazoa - 37496%3B Fungi - 11700%3B Plants - 24573%3B Viruses - 362%3B Other Eukaryotes - 17964 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12399181, PMID:12376626, PMID:12913170, PMID:14576160, PMID:16007489, PMID:16513634, PMID:18650403, PMID:21477822, PMID:21757708, locus:2024341; locus_type=protein_coding
AT1G09840.2	chr1:003196114	0.0	C/3196114-3196202,3196515-3196617,3196700-3196783,3197231-3197326,3197596-3197646,3197743-3197883,3197952-3198008,3198443-3198517,3198656-3198928,3199014-3199073,3199161-3199253,3199381-3199524	AT1G09840.2 CDS AT1G09840 ID=AT1G09840.2; Parent=AT1G09840; Name=AT1G09840.2; Note=shaggy-like protein kinase 41; conf_class=2; symbol=SK41; Alias=ATSK41, shaggy-like protein kinase 41, AtHIR1, HIR1, hypersensitive induced reaction 1; full_name=shaggy-like protein kinase 41; computational_description=shaggy-like protein kinase 41 (SK41)%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: shaggy-like kinase 42 (TAIR:AT1G57870.2)%3B Has 102931 Blast hits to 101896 proteins in 3684 species: Archae - 93%3B Bacteria - 10743%3B Metazoa - 37496%3B Fungi - 11700%3B Plants - 24573%3B Viruses - 362%3B Other Eukaryotes - 17964 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12399181, PMID:12376626, PMID:12913170, PMID:14576160, PMID:16007489, PMID:16513634, PMID:18650403, PMID:21477822, PMID:21757708, locus:2024341; locus_type=protein_coding
AT1G09840.3	chr1:003196114	0.0	C/3196114-3196202,3196515-3196617,3196700-3196783,3197231-3197326,3197596-3197646,3197743-3197883,3197952-3198008,3198443-3198517,3198656-3198928,3199014-3199073,3199161-3199253,3199381-3199524	AT1G09840.3 CDS AT1G09840 ID=AT1G09840.3; Parent=AT1G09840; Name=AT1G09840.3; Note=shaggy-like protein kinase 41; conf_class=2; symbol=SK41; Alias=ATSK41, shaggy-like protein kinase 41, AtHIR1, HIR1, hypersensitive induced reaction 1; full_name=shaggy-like protein kinase 41; computational_description=shaggy-like protein kinase 41 (SK41)%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: shaggy-like kinase 42 (TAIR:AT1G57870.2)%3B Has 102931 Blast hits to 101896 proteins in 3684 species: Archae - 93%3B Bacteria - 10743%3B Metazoa - 37496%3B Fungi - 11700%3B Plants - 24573%3B Viruses - 362%3B Other Eukaryotes - 17964 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12399181, PMID:12376626, PMID:12913170, PMID:14576160, PMID:16007489, PMID:16513634, PMID:18650403, PMID:21477822, PMID:21757708, locus:2024341; locus_type=protein_coding
AT1G09840.4	chr1:003196114	0.0	C/3196114-3196202,3196515-3196617,3196700-3196783,3197231-3197326,3197596-3197646,3197743-3197883,3197952-3198008,3198443-3198517,3198656-3198928,3199014-3199073,3199161-3199253,3199381-3199524	AT1G09840.4 CDS AT1G09840 ID=AT1G09840.4; Parent=AT1G09840; Name=AT1G09840.4; Note=shaggy-like protein kinase 41; conf_class=2; symbol=SK41; Alias=ATSK41, shaggy-like protein kinase 41, AtHIR1, HIR1, hypersensitive induced reaction 1; full_name=shaggy-like protein kinase 41; computational_description=shaggy-like protein kinase 41 (SK41)%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: shaggy-like kinase 42 (TAIR:AT1G57870.2)%3B Has 102931 Blast hits to 101896 proteins in 3684 species: Archae - 93%3B Bacteria - 10743%3B Metazoa - 37496%3B Fungi - 11700%3B Plants - 24573%3B Viruses - 362%3B Other Eukaryotes - 17964 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12399181, PMID:12376626, PMID:12913170, PMID:14576160, PMID:16007489, PMID:16513634, PMID:18650403, PMID:21477822, PMID:21757708, locus:2024341; locus_type=protein_coding
AT1G09840.5	chr1:003196114	0.0	C/3196114-3196202,3196515-3196617,3196700-3196783,3197231-3197326,3197596-3197646,3197743-3197883,3197952-3198008,3198443-3198517,3198656-3198928,3199014-3199073,3199161-3199253,3199381-3199524	AT1G09840.5 CDS AT1G09840 ID=AT1G09840.5; Parent=AT1G09840; Name=AT1G09840.5; Note=shaggy-like protein kinase 41; conf_class=2; symbol=SK41; Alias=ATSK41, shaggy-like protein kinase 41, AtHIR1, HIR1, hypersensitive induced reaction 1; full_name=shaggy-like protein kinase 41; computational_description=shaggy-like protein kinase 41 (SK41)%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: shaggy-like kinase 42 (TAIR:AT1G57870.2)%3B Has 102931 Blast hits to 101896 proteins in 3684 species: Archae - 93%3B Bacteria - 10743%3B Metazoa - 37496%3B Fungi - 11700%3B Plants - 24573%3B Viruses - 362%3B Other Eukaryotes - 17964 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12399181, PMID:12376626, PMID:12913170, PMID:14576160, PMID:16007489, PMID:16513634, PMID:18650403, PMID:21477822, PMID:21757708, locus:2024341; locus_type=protein_coding
AT1G09840.6	chr1:003196114	0.0	C/3196114-3196202,3196515-3196617,3196700-3196783,3197231-3197326,3197596-3197646,3197743-3197883,3197952-3198008,3198443-3198517,3198656-3198928,3199014-3199073,3199161-3199253,3199381-3199524	AT1G09840.6 CDS AT1G09840 ID=AT1G09840.6; Parent=AT1G09840; Name=AT1G09840.6; Note=shaggy-like protein kinase 41; conf_class=2; symbol=SK41; Alias=ATSK41, shaggy-like protein kinase 41, AtHIR1, HIR1, hypersensitive induced reaction 1; full_name=shaggy-like protein kinase 41; computational_description=shaggy-like protein kinase 41 (SK41)%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: shaggy-like kinase 42 (TAIR:AT1G57870.2)%3B Has 102931 Blast hits to 101896 proteins in 3684 species: Archae - 93%3B Bacteria - 10743%3B Metazoa - 37496%3B Fungi - 11700%3B Plants - 24573%3B Viruses - 362%3B Other Eukaryotes - 17964 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12399181, PMID:12376626, PMID:12913170, PMID:14576160, PMID:16007489, PMID:16513634, PMID:18650403, PMID:21477822, PMID:21757708, locus:2024341; locus_type=protein_coding
AT1G09840.7	chr1:003196114	0.0	C/3196114-3196202,3196515-3196617,3196700-3196783,3197231-3197326,3197596-3197646,3197743-3197883,3197952-3198008,3198443-3198517,3198656-3198928,3199014-3199073,3199161-3199253,3199381-3199524	AT1G09840.7 CDS AT1G09840 ID=AT1G09840.7; Parent=AT1G09840; Name=AT1G09840.7; Note=shaggy-like protein kinase 41; symbol=SK41; Alias=ATSK41, shaggy-like protein kinase 41, AtHIR1, HIR1, hypersensitive induced reaction 1; full_name=shaggy-like protein kinase 41; Dbxref=PMID:12399181, PMID:12376626, PMID:12913170, PMID:14576160, PMID:16007489, PMID:16513634, PMID:18650403, PMID:21477822, PMID:21757708, locus:2024341; computational_description=shaggy-like protein kinase 41 (SK41)%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: shaggy-like kinase 42 (TAIR:AT1G57870.2)%3B Has 102931 Blast hits to 101896 proteins in 3684 species: Archae - 93%3B Bacteria - 10743%3B Metazoa - 37496%3B Fungi - 11700%3B Plants - 24573%3B Viruses - 362%3B Other Eukaryotes - 17964 (source: NCBI BLink).; locus_type=protein_coding
AT1G09840.8	chr1:003196114	0.0	C/3196114-3196202,3196515-3196617,3196700-3196783,3197231-3197326,3197596-3197646,3197743-3197883,3197952-3198008,3198443-3198517,3198656-3198928,3199014-3199073,3199161-3199253,3199381-3199524	AT1G09840.8 CDS AT1G09840 ID=AT1G09840.8; Parent=AT1G09840; Name=AT1G09840.8; Note=shaggy-like protein kinase 41; symbol=SK41; Alias=ATSK41, shaggy-like protein kinase 41, AtHIR1, HIR1, hypersensitive induced reaction 1; full_name=shaggy-like protein kinase 41; Dbxref=PMID:12399181, PMID:12376626, PMID:12913170, PMID:14576160, PMID:16007489, PMID:16513634, PMID:18650403, PMID:21477822, PMID:21757708, locus:2024341; computational_description=shaggy-like protein kinase 41 (SK41)%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: shaggy-like kinase 42 (TAIR:AT1G57870.2)%3B Has 102931 Blast hits to 101896 proteins in 3684 species: Archae - 93%3B Bacteria - 10743%3B Metazoa - 37496%3B Fungi - 11700%3B Plants - 24573%3B Viruses - 362%3B Other Eukaryotes - 17964 (source: NCBI BLink).; locus_type=protein_coding
AT1G09840.9	chr1:003196114	0.0	C/3196114-3196202,3196515-3196617,3196700-3196783,3197231-3197326,3197596-3197646,3197743-3197883,3197952-3198008,3198443-3198517,3198656-3198928,3199014-3199073,3199161-3199253,3199381-3199524	AT1G09840.9 CDS AT1G09840 ID=AT1G09840.9; Parent=AT1G09840; Name=AT1G09840.9; Note=shaggy-like protein kinase 41; symbol=SK41; Alias=ATSK41, shaggy-like protein kinase 41, AtHIR1, HIR1, hypersensitive induced reaction 1; full_name=shaggy-like protein kinase 41; Dbxref=PMID:12399181, PMID:12376626, PMID:12913170, PMID:14576160, PMID:16007489, PMID:16513634, PMID:18650403, PMID:21477822, PMID:21757708, locus:2024341; computational_description=shaggy-like protein kinase 41 (SK41)%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: shaggy-like kinase 42 (TAIR:AT1G57870.2)%3B Has 102931 Blast hits to 101896 proteins in 3684 species: Archae - 93%3B Bacteria - 10743%3B Metazoa - 37496%3B Fungi - 11700%3B Plants - 24573%3B Viruses - 362%3B Other Eukaryotes - 17964 (source: NCBI BLink).; locus_type=protein_coding
AT1G09850.1	chr1:003201848	0.0	W/3201848-3202265,3202709-3202944,3203045-3203185,3203271-3203702,3203789-3203875	AT1G09850.1 CDS AT1G09850 ID=AT1G09850.1; Parent=AT1G09850; Name=AT1G09850.1; Note=xylem bark cysteine peptidase 3; curator_summary=Arabidopsis thaliana papain-like cysteine peptidase; conf_class=1; symbol=XBCP3; full_name=xylem bark cysteine peptidase 3; computational_description=xylem bark cysteine peptidase 3 (XBCP3)%3B FUNCTIONS IN: cysteine-type endopeptidase activity%2C cysteine-type peptidase activity%3B INVOLVED IN: proteolysis%3B LOCATED IN: vacuole%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase C1A%2C papain (InterPro:IPR013128)%2C Proteinase inhibitor I29%2C cathepsin propeptide (InterPro:IPR013201)%2C Granulin (InterPro:IPR000118)%2C Peptidase C1A%2C papain C-terminal (InterPro:IPR000668)%2C Peptidase%2C cysteine peptidase active site (InterPro:IPR000169)%3B BEST Arabidopsis thaliana protein match is: Granulin repeat cysteine protease family protein (TAIR:AT5G43060.1)%3B Has 8836 Blast hits to 8016 proteins in 749 species: Archae - 59%3B Bacteria - 272%3B Metazoa - 4224%3B Fungi - 4%3B Plants - 1933%3B Viruses - 132%3B Other Eukaryotes - 2212 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14697270, PMID:15539469, PMID:18775970, PMID:20736450, locus:2024362; locus_type=protein_coding
AT1G04737.1	chr1:003202274	0.0	C/3202274-3202774	AT1G04737.1 antisense_lncRNA AT1G04737 ID=AT1G04737.1; Parent=AT1G04737; Name=AT1G04737.1; description=Natural antisense transcript overlaps with AT1G09850; Note=Natural antisense transcript overlaps with AT1G09850; locus_type=antisense_long_noncoding_rna
AT1G09860.1	chr1:003204136	0.0	C/3204136-3205287	AT1G09860.1 CDS AT1G09860 ID=AT1G09860.1; Parent=AT1G09860; Name=AT1G09860.1; Note=purine permease 16; curator_summary=Member of a family of proteins related to PUP1%2C a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins%2C across the plasma membrane.; conf_class=1; symbol=PUP16; Alias=ATPUP16, purine permease 16; full_name=purine permease 16; computational_description=purine permease 16 (PUP16)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853)%3B BEST Arabidopsis thaliana protein match is: purine permease 17 (TAIR:AT1G57943.1)%3B Has 330 Blast hits to 323 proteins in 16 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 0%3B Fungi - 0%3B Plants - 326%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:10662864, PMID:15634198, PMID:16489130, PMID:18835995, PMID:23551747, locus:2024382; locus_type=protein_coding
AT1G04743.1	chr1:003204309	0.0	W/3204309-3205338	AT1G04743.1 antisense_lncRNA AT1G04743 ID=AT1G04743.1; Parent=AT1G04743; Name=AT1G04743.1; description=Natural antisense transcript overlaps with AT1G09860; Note=Natural antisense transcript overlaps with AT1G09860; locus_type=antisense_long_noncoding_rna
AT1G09870.1	chr1:003205817	0.0	W/3205817-3205917,3206111-3206198,3206278-3206571,3206686-3206844,3206964-3207104,3207220-3207276,3207377-3207515,3207609-3207713,3207820-3208010,3208168-3208209,3208298-3208444	AT1G09870.1 CDS AT1G09870 ID=AT1G09870.1; Parent=AT1G09870; Name=AT1G09870.1; Note=histidine acid phosphatase family protein; conf_class=2; computational_description=histidine acid phosphatase family protein%3B FUNCTIONS IN: acid phosphatase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Histidine phosphatase superfamily%2C clade-2 (InterPro:IPR000560)%2C Histidine acid phosphatase%2C eukaryotic (InterPro:IPR016274)%3B Has 765 Blast hits to 755 proteins in 231 species: Archae - 0%3B Bacteria - 126%3B Metazoa - 192%3B Fungi - 356%3B Plants - 52%3B Viruses - 0%3B Other Eukaryotes - 39 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15295017, PMID:15694452, PMID:18650403, locus:2024402; locus_type=protein_coding
AT1G09880.1	chr1:003208828	0.0	C/3208828-3209085,3209168-3209300,3209377-3209650,3209731-3209872,3209964-3210054,3210143-3210249,3210331-3210486,3210569-3210739,3210848-3211109,3211184-3211300,3211385-3211450,3211535-3211653	AT1G09880.1 CDS AT1G09880 ID=AT1G09880.1; Parent=AT1G09880; Name=AT1G09880.1; Note=Rhamnogalacturonate lyase family protein; conf_class=3; computational_description=Rhamnogalacturonate lyase family protein%3B CONTAINS InterPro DOMAIN/s: Rhamnogalacturonate lyase (InterPro:IPR010325)%2C Carbohydrate-binding-like fold (InterPro:IPR013784)%2C Galactose-binding domain-like (InterPro:IPR008979)%3B BEST Arabidopsis thaliana protein match is: Rhamnogalacturonate lyase family protein (TAIR:AT1G09890.1)%3B Has 288 Blast hits to 274 proteins in 61 species: Archae - 0%3B Bacteria - 42%3B Metazoa - 0%3B Fungi - 85%3B Plants - 160%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2024417; locus_type=protein_coding
AT1G09880.2	chr1:003208828	0.0	C/3208828-3209085,3209168-3209300,3209377-3209650,3209731-3209872,3209964-3210054,3210143-3210249,3210331-3210486,3210569-3210739,3210848-3211109,3211184-3211300,3211385-3211450,3211535-3211659,3211834-3211979,3212118-3212163	AT1G09880.2 CDS AT1G09880 ID=AT1G09880.2; Parent=AT1G09880; Name=AT1G09880.2; Note=Rhamnogalacturonate lyase family protein; computational_description=Rhamnogalacturonate lyase family protein%3B CONTAINS InterPro DOMAIN/s: Rhamnogalacturonate lyase (InterPro:IPR010325)%2C Carbohydrate-binding-like fold (InterPro:IPR013784)%2C Galactose-binding domain-like (InterPro:IPR008979)%3B BEST Arabidopsis thaliana protein match is: Rhamnogalacturonate lyase family protein (TAIR:AT1G09890.1)%3B Has 288 Blast hits to 274 proteins in 61 species: Archae - 0%3B Bacteria - 42%3B Metazoa - 0%3B Fungi - 85%3B Plants - 160%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; Dbxref=locus:2024417; locus_type=protein_coding
AT1G09880.3	chr1:003208828	0.0	C/3208828-3209085,3209168-3209300,3209377-3209650,3209731-3209872,3209964-3210054,3210143-3210249,3210331-3210486,3210569-3210739,3210848-3211109,3211184-3211300,3211385-3211450,3211535-3211659,3211834-3211979,3212118-3212202,3213415-3213417	AT1G09880.3 CDS AT1G09880 ID=AT1G09880.3; Parent=AT1G09880; Name=AT1G09880.3; Note=Rhamnogalacturonate lyase family protein; computational_description=Rhamnogalacturonate lyase family protein%3B CONTAINS InterPro DOMAIN/s: Rhamnogalacturonate lyase (InterPro:IPR010325)%2C Carbohydrate-binding-like fold (InterPro:IPR013784)%2C Galactose-binding domain-like (InterPro:IPR008979)%3B BEST Arabidopsis thaliana protein match is: Rhamnogalacturonate lyase family protein (TAIR:AT1G09890.1)%3B Has 288 Blast hits to 274 proteins in 61 species: Archae - 0%3B Bacteria - 42%3B Metazoa - 0%3B Fungi - 85%3B Plants - 160%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; Dbxref=locus:2024417; locus_type=protein_coding
AT1G09880.4	chr1:003208828	0.0	C/3208828-3209085,3209168-3209300,3209377-3209650,3209731-3209872,3209964-3210054,3210143-3210249,3210331-3210486,3210569-3210739,3210848-3211109,3211184-3211300,3211385-3211450,3211535-3211659,3211834-3211929	AT1G09880.4 CDS AT1G09880 ID=AT1G09880.4; Parent=AT1G09880; Name=AT1G09880.4; Note=Rhamnogalacturonate lyase family protein; computational_description=Rhamnogalacturonate lyase family protein%3B CONTAINS InterPro DOMAIN/s: Rhamnogalacturonate lyase (InterPro:IPR010325)%2C Carbohydrate-binding-like fold (InterPro:IPR013784)%2C Galactose-binding domain-like (InterPro:IPR008979)%3B BEST Arabidopsis thaliana protein match is: Rhamnogalacturonate lyase family protein (TAIR:AT1G09890.1)%3B Has 288 Blast hits to 274 proteins in 61 species: Archae - 0%3B Bacteria - 42%3B Metazoa - 0%3B Fungi - 85%3B Plants - 160%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; Dbxref=locus:2024417; locus_type=protein_coding
AT1G04747.1	chr1:003212812	0.0	W/3212812-3213011	AT1G04747.1 lnc_RNA AT1G04747 ID=AT1G04747.1; Parent=AT1G04747; Name=AT1G04747.1; locus_type=long_noncoding_rna
AT1G09890.1	chr1:003214237	0.0	C/3214237-3214467,3214582-3214708,3214796-3214912,3215098-3215254,3215327-3215468,3215557-3215647,3215769-3215875,3215958-3216116,3216188-3216361,3216459-3216600,3216682-3216801,3216871-3216990,3217134-3217184,3217271-3217386	AT1G09890.1 CDS AT1G09890 ID=AT1G09890.1; Parent=AT1G09890; Name=AT1G09890.1; Note=Rhamnogalacturonate lyase family protein; conf_class=3; computational_description=Rhamnogalacturonate lyase family protein%3B CONTAINS InterPro DOMAIN/s: Rhamnogalacturonate lyase (InterPro:IPR010325)%2C Carbohydrate-binding-like fold (InterPro:IPR013784)%2C Galactose-binding domain-like (InterPro:IPR008979)%3B BEST Arabidopsis thaliana protein match is: Rhamnogalacturonate lyase family protein (TAIR:AT1G09910.1)%3B Has 301 Blast hits to 285 proteins in 64 species: Archae - 0%3B Bacteria - 51%3B Metazoa - 0%3B Fungi - 84%3B Plants - 166%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2024427; locus_type=protein_coding
AT1G09890.3	chr1:003214237	0.0	C/3214237-3214467,3214582-3214708,3214796-3214912,3215098-3215468,3215557-3215647,3215769-3215875,3215958-3216116,3216188-3216361,3216459-3216600,3216682-3216801,3216871-3216990,3217134-3217184,3217271-3217392,3217500-3217541	AT1G09890.3 CDS AT1G09890 ID=AT1G09890.3; Parent=AT1G09890; Name=AT1G09890.3; Note=Rhamnogalacturonate lyase family protein; computational_description=Rhamnogalacturonate lyase family protein%3B CONTAINS InterPro DOMAIN/s: Rhamnogalacturonate lyase (InterPro:IPR010325)%2C Carbohydrate-binding-like fold (InterPro:IPR013784)%2C Galactose-binding domain-like (InterPro:IPR008979)%3B BEST Arabidopsis thaliana protein match is: Rhamnogalacturonate lyase family protein (TAIR:AT1G09910.1)%3B Has 301 Blast hits to 285 proteins in 64 species: Archae - 0%3B Bacteria - 51%3B Metazoa - 0%3B Fungi - 84%3B Plants - 166%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=locus:2024427; locus_type=protein_coding
AT1G09890.4	chr1:003214237	0.0	C/3214237-3214467,3214582-3214708,3214796-3214912,3215098-3215254,3215327-3215468,3215557-3215647,3215769-3215875,3215958-3216116,3216188-3216361,3216459-3216600,3216682-3216801,3216871-3216990,3217134-3217184,3217271-3217392,3217500-3217541	AT1G09890.4 CDS AT1G09890 ID=AT1G09890.4; Parent=AT1G09890; Name=AT1G09890.4; Note=Rhamnogalacturonate lyase family protein; computational_description=Rhamnogalacturonate lyase family protein%3B CONTAINS InterPro DOMAIN/s: Rhamnogalacturonate lyase (InterPro:IPR010325)%2C Carbohydrate-binding-like fold (InterPro:IPR013784)%2C Galactose-binding domain-like (InterPro:IPR008979)%3B BEST Arabidopsis thaliana protein match is: Rhamnogalacturonate lyase family protein (TAIR:AT1G09910.1)%3B Has 301 Blast hits to 285 proteins in 64 species: Archae - 0%3B Bacteria - 51%3B Metazoa - 0%3B Fungi - 84%3B Plants - 166%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=locus:2024427; locus_type=protein_coding
AT1G09890.5	chr1:003214237	0.0	C/3214237-3214467,3214582-3214708,3214796-3214912,3215098-3215254,3215327-3215468,3215557-3215647,3215769-3215875,3215958-3216116,3216188-3216361,3216459-3216600,3216682-3216786,3216871-3216990,3217134-3217184,3217271-3217392,3217500-3217541	AT1G09890.5 CDS AT1G09890 ID=AT1G09890.5; Parent=AT1G09890; Name=AT1G09890.5; Note=Rhamnogalacturonate lyase family protein; computational_description=Rhamnogalacturonate lyase family protein%3B CONTAINS InterPro DOMAIN/s: Rhamnogalacturonate lyase (InterPro:IPR010325)%2C Carbohydrate-binding-like fold (InterPro:IPR013784)%2C Galactose-binding domain-like (InterPro:IPR008979)%3B BEST Arabidopsis thaliana protein match is: Rhamnogalacturonate lyase family protein (TAIR:AT1G09910.1)%3B Has 301 Blast hits to 285 proteins in 64 species: Archae - 0%3B Bacteria - 51%3B Metazoa - 0%3B Fungi - 84%3B Plants - 166%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=locus:2024427; locus_type=protein_coding
AT1G09890.2	chr1:003214771	0.0	C/3214771-3214912,3215098-3215468,3215557-3215647,3215769-3215875,3215958-3216116,3216188-3216361,3216459-3216600,3216682-3216801,3216871-3216990,3217134-3217184,3217271-3217392,3217500-3217541	AT1G09890.2 CDS AT1G09890 ID=AT1G09890.2; Parent=AT1G09890; Name=AT1G09890.2; Note=Rhamnogalacturonate lyase family protein; computational_description=Rhamnogalacturonate lyase family protein%3B CONTAINS InterPro DOMAIN/s: Rhamnogalacturonate lyase (InterPro:IPR010325)%2C Carbohydrate-binding-like fold (InterPro:IPR013784)%2C Galactose-binding domain-like (InterPro:IPR008979)%3B BEST Arabidopsis thaliana protein match is: Rhamnogalacturonate lyase family protein (TAIR:AT1G09910.1)%3B Has 301 Blast hits to 285 proteins in 64 species: Archae - 0%3B Bacteria - 51%3B Metazoa - 0%3B Fungi - 84%3B Plants - 166%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=locus:2024427; locus_type=protein_coding
AT1G09900.1	chr1:003218133	0.0	W/3218133-3219929	AT1G09900.1 CDS AT1G09900 ID=AT1G09900.1; Parent=AT1G09900; Name=AT1G09900.1; Note=Pentatricopeptide repeat (PPR-like) superfamily protein; conf_class=1; computational_description=Pentatricopeptide repeat (PPR-like) superfamily protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR-like) superfamily protein (TAIR:AT3G04760.1)%3B Has 67710 Blast hits to 15322 proteins in 310 species: Archae - 4%3B Bacteria - 73%3B Metazoa - 1094%3B Fungi - 1217%3B Plants - 62670%3B Viruses - 0%3B Other Eukaryotes - 2652 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:2024296; locus_type=protein_coding
AT1G09910.1	chr1:003220151	0.0	C/3220151-3220387,3220466-3220706,3220790-3220946,3221017-3221158,3221328-3221418,3221533-3221639,3221731-3221886,3221966-3222136,3222345-3222486,3222714-3222833,3222912-3223031,3223353-3223403,3223528-3223649,3223734-3223831,3224379-3224451	AT1G09910.1 CDS AT1G09910 ID=AT1G09910.1; Parent=AT1G09910; Name=AT1G09910.1; Note=Rhamnogalacturonate lyase family protein; conf_class=2; computational_description=Rhamnogalacturonate lyase family protein%3B FUNCTIONS IN: lyase activity%3B INVOLVED IN: carbohydrate metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013)%2C Rhamnogalacturonate lyase (InterPro:IPR010325)%2C Carbohydrate-binding-like fold (InterPro:IPR013784)%2C Galactose-binding domain-like (InterPro:IPR008979)%3B BEST Arabidopsis thaliana protein match is: Rhamnogalacturonate lyase family protein (TAIR:AT1G09890.1)%3B Has 300 Blast hits to 279 proteins in 59 species: Archae - 0%3B Bacteria - 45%3B Metazoa - 0%3B Fungi - 84%3B Plants - 171%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15668172, PMID:18805951, locus:2024331; locus_type=protein_coding
AT1G09910.2	chr1:003220151	0.0	C/3220151-3220387,3220466-3220706,3220790-3220946,3221017-3221158,3221328-3221418,3221533-3221639,3221731-3221886,3221966-3222136,3222345-3222486,3222714-3222833,3222912-3223031,3223353-3223403,3223528-3223649,3223734-3223775	AT1G09910.2 CDS AT1G09910 ID=AT1G09910.2; Parent=AT1G09910; Name=AT1G09910.2; Note=Rhamnogalacturonate lyase family protein; computational_description=Rhamnogalacturonate lyase family protein%3B FUNCTIONS IN: lyase activity%3B INVOLVED IN: carbohydrate metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013)%2C Rhamnogalacturonate lyase (InterPro:IPR010325)%2C Carbohydrate-binding-like fold (InterPro:IPR013784)%2C Galactose-binding domain-like (InterPro:IPR008979)%3B BEST Arabidopsis thaliana protein match is: Rhamnogalacturonate lyase family protein (TAIR:AT1G09890.1)%3B Has 300 Blast hits to 279 proteins in 59 species: Archae - 0%3B Bacteria - 45%3B Metazoa - 0%3B Fungi - 84%3B Plants - 171%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=PMID:15668172, PMID:18805951, locus:2024331; locus_type=protein_coding
AT1G09910.3	chr1:003220151	0.0	C/3220151-3220387,3220466-3220706,3220790-3220946,3221017-3221158,3221328-3221418,3221533-3221639,3221731-3221886,3221966-3222136,3222345-3222486,3222714-3222833,3222912-3223031,3223353-3223403,3223528-3223649,3223734-3223775	AT1G09910.3 CDS AT1G09910 ID=AT1G09910.3; Parent=AT1G09910; Name=AT1G09910.3; Note=Rhamnogalacturonate lyase family protein; computational_description=Rhamnogalacturonate lyase family protein%3B FUNCTIONS IN: lyase activity%3B INVOLVED IN: carbohydrate metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013)%2C Rhamnogalacturonate lyase (InterPro:IPR010325)%2C Carbohydrate-binding-like fold (InterPro:IPR013784)%2C Galactose-binding domain-like (InterPro:IPR008979)%3B BEST Arabidopsis thaliana protein match is: Rhamnogalacturonate lyase family protein (TAIR:AT1G09890.1)%3B Has 300 Blast hits to 279 proteins in 59 species: Archae - 0%3B Bacteria - 45%3B Metazoa - 0%3B Fungi - 84%3B Plants - 171%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=PMID:15668172, PMID:18805951, locus:2024331; locus_type=protein_coding
AT1TE10470	chr1:003224486	0.0	W/3224486-3224558	AT1TE10470 transposable_element AT1TE10470 ID=AT1TE10470; Name=AT1TE10470; Alias=ATCOPIA59
AT1G09920.1	chr1:003224863	0.0	C/3224863-3225013,3225116-3225225,3225304-3225441,3225994-3226129,3226817-3226860	AT1G09920.1 CDS AT1G09920 ID=AT1G09920.1; Parent=AT1G09920; Name=AT1G09920.1; Note=TRAF-type zinc finger-like protein; conf_class=3; computational_description=TRAF-type zinc finger-related%3B BEST Arabidopsis thaliana protein match is: Ubiquitin fusion degradation UFD1 family protein (TAIR:AT4G15420.1)%3B Has 897 Blast hits to 860 proteins in 162 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 570%3B Fungi - 106%3B Plants - 68%3B Viruses - 0%3B Other Eukaryotes - 153 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18650403, PMID:18775970, locus:2024351; locus_type=protein_coding
AT1G09930.1	chr1:003227490	0.0	C/3227490-3228290,3228373-3228625,3228704-3229267,3229365-3229462,3229555-3230043	AT1G09930.1 CDS AT1G09930 ID=AT1G09930.1; Parent=AT1G09930; Name=AT1G09930.1; Note=oligopeptide transporter 2; curator_summary=oligopeptide transporter; conf_class=2; symbol=OPT2; Alias=ATOPT2, oligopeptide transporter 2; full_name=oligopeptide transporter 2; computational_description=oligopeptide transporter 2 (OPT2)%3B FUNCTIONS IN: oligopeptide transporter activity%3B INVOLVED IN: oligopeptide transport%2C transmembrane transport%3B LOCATED IN: plasma membrane%2C membrane%3B EXPRESSED IN: sperm cell%2C flower%2C pollen tube%3B EXPRESSED DURING: 4 anthesis%3B CONTAINS InterPro DOMAIN/s: Tetrapeptide transporter%2C OPT1/isp4 (InterPro:IPR004648)%2C Oligopeptide transporter OPT superfamily (InterPro:IPR004813)%3B BEST Arabidopsis thaliana protein match is: oligopeptide transporter 4 (TAIR:AT5G64410.1)%3B Has 1309 Blast hits to 1283 proteins in 148 species: Archae - 0%3B Bacteria - 69%3B Metazoa - 0%3B Fungi - 834%3B Plants - 392%3B Viruses - 0%3B Other Eukaryotes - 14 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11788749, PMID:13129917, PMID:16510518, PMID:16607029, PMID:17481610, PMID:18775970, PMID:23945001, locus:2024372; locus_type=protein_coding
AT1G09932.1	chr1:003230716	0.0	C/3230716-3230800,3230881-3230922,3231065-3231184,3231544-3231632,3231737-3231811,3232017-3232137,3232477-3232556,3232670-3232777,3232965-3233027	AT1G09932.1 CDS AT1G09932 ID=AT1G09932.1; Parent=AT1G09932; Name=AT1G09932.1; Note=Phosphoglycerate mutase family protein; conf_class=2; computational_description=Phosphoglycerate mutase family protein%3B CONTAINS InterPro DOMAIN/s: Histidine phosphatase superfamily%2C clade-1 (InterPro:IPR013078)%3B BEST Arabidopsis thaliana protein match is: Phosphoglycerate mutase family protein (TAIR:AT2G17280.2)%3B Has 552 Blast hits to 552 proteins in 105 species: Archae - 0%3B Bacteria - 9%3B Metazoa - 0%3B Fungi - 272%3B Plants - 167%3B Viruses - 0%3B Other Eukaryotes - 104 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:1005716755; locus_type=protein_coding
AT1G09932.2	chr1:003230716	0.0	C/3230716-3230800,3230881-3230922,3231065-3231184,3231544-3231632,3231737-3231811,3232017-3232137,3232477-3232556,3232670-3232777,3232883-3232924	AT1G09932.2 CDS AT1G09932 ID=AT1G09932.2; Parent=AT1G09932; Name=AT1G09932.2; Note=Phosphoglycerate mutase family protein; conf_class=3; computational_description=Phosphoglycerate mutase family protein%3B CONTAINS InterPro DOMAIN/s: Histidine phosphatase superfamily%2C clade-1 (InterPro:IPR013078)%3B BEST Arabidopsis thaliana protein match is: Phosphoglycerate mutase family protein (TAIR:AT2G17280.2)%3B Has 552 Blast hits to 552 proteins in 105 species: Archae - 0%3B Bacteria - 9%3B Metazoa - 0%3B Fungi - 272%3B Plants - 167%3B Viruses - 0%3B Other Eukaryotes - 104 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:1005716755; locus_type=protein_coding
AT1G09932.4	chr1:003230716	0.0	C/3230716-3230800,3230881-3230922,3231065-3231184,3231544-3231632,3232017-3232137,3232477-3232556,3232670-3232777,3232965-3233027	AT1G09932.4 CDS AT1G09932 ID=AT1G09932.4; Parent=AT1G09932; Name=AT1G09932.4; Note=Phosphoglycerate mutase family protein; computational_description=Phosphoglycerate mutase family protein%3B CONTAINS InterPro DOMAIN/s: Histidine phosphatase superfamily%2C clade-1 (InterPro:IPR013078)%3B BEST Arabidopsis thaliana protein match is: Phosphoglycerate mutase family protein (TAIR:AT2G17280.2)%3B Has 552 Blast hits to 552 proteins in 105 species: Archae - 0%3B Bacteria - 9%3B Metazoa - 0%3B Fungi - 272%3B Plants - 167%3B Viruses - 0%3B Other Eukaryotes - 104 (source: NCBI BLink).; Dbxref=locus:1005716755; locus_type=protein_coding
AT1G09932.3	chr1:003230877	0.0	C/3230877-3230922,3231065-3231184,3231544-3231632,3231737-3231811,3232017-3232137,3232477-3232556,3232670-3232777,3232965-3233027	AT1G09932.3 CDS AT1G09932 ID=AT1G09932.3; Parent=AT1G09932; Name=AT1G09932.3; Note=Phosphoglycerate mutase family protein; computational_description=Phosphoglycerate mutase family protein%3B CONTAINS InterPro DOMAIN/s: Histidine phosphatase superfamily%2C clade-1 (InterPro:IPR013078)%3B BEST Arabidopsis thaliana protein match is: Phosphoglycerate mutase family protein (TAIR:AT2G17280.2)%3B Has 552 Blast hits to 552 proteins in 105 species: Archae - 0%3B Bacteria - 9%3B Metazoa - 0%3B Fungi - 272%3B Plants - 167%3B Viruses - 0%3B Other Eukaryotes - 104 (source: NCBI BLink).; Dbxref=locus:1005716755; locus_type=protein_coding
AT1G09935.1	chr1:003234060	0.0	C/3234060-3234084,3234165-3234209,3234286-3234405,3234494-3234582,3234693-3234767,3234872-3234974,3235079-3235158,3235271-3235378,3235480-3235530	AT1G09935.1 CDS AT1G09935 ID=AT1G09935.1; Parent=AT1G09935; Name=AT1G09935.1; Note=Phosphoglycerate mutase family protein; conf_class=9; computational_description=Phosphoglycerate mutase family protein%3B FUNCTIONS IN: catalytic activity%3B INVOLVED IN: metabolic process%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Histidine phosphatase superfamily%2C clade-1 (InterPro:IPR013078)%2C Phosphoglycerate/bisphosphoglycerate mutase%2C active site (InterPro:IPR001345)%3B BEST Arabidopsis thaliana protein match is: Phosphoglycerate mutase family protein (TAIR:AT1G58280.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).; conf_rating=*; Dbxref=locus:504956275; locus_type=protein_coding
AT1G09935.2	chr1:003234155	0.0	C/3234155-3234209,3234286-3234405,3234494-3234582,3234693-3234767,3234872-3234974,3235079-3235158,3235271-3235378,3235480-3235530	AT1G09935.2 CDS AT1G09935 ID=AT1G09935.2; Parent=AT1G09935; Name=AT1G09935.2; Note=Phosphoglycerate mutase family protein; computational_description=Phosphoglycerate mutase family protein%3B FUNCTIONS IN: catalytic activity%3B INVOLVED IN: metabolic process%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Histidine phosphatase superfamily%2C clade-1 (InterPro:IPR013078)%2C Phosphoglycerate/bisphosphoglycerate mutase%2C active site (InterPro:IPR001345)%3B BEST Arabidopsis thaliana protein match is: Phosphoglycerate mutase family protein (TAIR:AT1G58280.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).; Dbxref=locus:504956275; locus_type=protein_coding
AT1G09940.1	chr1:003237224	0.0	C/3237224-3238336,3238496-3238737,3239025-3239262	AT1G09940.1 CDS AT1G09940 ID=AT1G09940.1; Parent=AT1G09940; Name=AT1G09940.1; Note=Glutamyl-tRNA reductase family protein; curator_summary=Encodes glutamyl-tRNA reductase. Involved in heme biosynthesis in non-photosynthetic tissues and induced by oxidative stress in photosynthetic tissues to supply heme for defensive hemoproteins; conf_class=1; symbol=HEMA2; computational_description=HEMA2%3B FUNCTIONS IN: glutamyl-tRNA reductase activity%3B INVOLVED IN: response to oxidative stress%2C heme biosynthetic process%2C tetrapyrrole biosynthetic process%2C porphyrin biosynthetic process%3B LOCATED IN: cytoplasm%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase (InterPro:IPR006151)%2C Tetrapyrrole biosynthesis%2C glutamyl-tRNA reductase%2C conserved site (InterPro:IPR018214)%2C Tetrapyrrole biosynthesis%2C glutamyl-tRNA reductase%2C C-terminal (InterPro:IPR015896)%2C Tetrapyrrole biosynthesis%2C glutamyl-tRNA reductase (InterPro:IPR000343)%2C Tetrapyrrole biosynthesis%2C glutamyl-tRNA reductase%2C N-terminal (InterPro:IPR015895)%3B BEST Arabidopsis thaliana protein match is: Glutamyl-tRNA reductase family protein (TAIR:AT1G58290.1)%3B Has 5044 Blast hits to 5020 proteins in 1819 species: Archae - 226%3B Bacteria - 3662%3B Metazoa - 1%3B Fungi - 0%3B Plants - 221%3B Viruses - 0%3B Other Eukaryotes - 934 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:8605295, PMID:11309145, PMID:12139011, PMID:12777052, PMID:14576160, PMID:15326282, PMID:15632054, PMID:15951223, PMID:17416636, PMID:18053238, PMID:18775970, PMID:21908688, PMID:24449654, locus:2024392; locus_type=protein_coding
AT1G09950.1	chr1:003240849	0.0	C/3240849-3241541	AT1G09950.1 CDS AT1G09950 ID=AT1G09950.1; Parent=AT1G09950; Name=AT1G09950.1; Note=RESPONSE TO ABA AND SALT 1; conf_class=1; symbol=RAS1; full_name=RESPONSE TO ABA AND SALT 1; computational_description=RESPONSE TO ABA AND SALT 1 (RAS1)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: leaf apex%2C root%2C flower%2C leaf%3B EXPRESSED DURING: petal differentiation and expansion stage%3B BEST Arabidopsis thaliana protein match is: transcription factor-related (TAIR:AT1G58330.1)%3B Has 520 Blast hits to 520 proteins in 34 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 520%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14651343, PMID:15047901, PMID:15194820, PMID:17581762, PMID:17888165, PMID:20212128, locus:2024412; locus_type=protein_coding
AT1G09960.1	chr1:003244258	0.0	W/3244258-3244795,3245159-3245886,3246023-3246086,3246215-3246258,3246560-3246718	AT1G09960.1 CDS AT1G09960 ID=AT1G09960.1; Parent=AT1G09960; Name=AT1G09960.1; Note=sucrose transporter 4; curator_summary=low affinity (10mM) sucrose transporter in sieve elements (phloem); conf_class=1; symbol=SUT4; Alias=ATSUC4, SUCROSE TRANSPORTER 4, ATSUT4, SUCROSE TRANSPORTER 4, SUC4, SUCROSE TRANSPORTER 4; full_name=sucrose transporter 4; computational_description=sucrose transporter 4 (SUT4)%3B FUNCTIONS IN: sucrose transmembrane transporter activity%2C carbohydrate transmembrane transporter activity%2C sugar:hydrogen symporter activity%2C sucrose:hydrogen symporter activity%3B INVOLVED IN: sucrose transport%2C transmembrane transport%3B LOCATED IN: plasma membrane%2C vacuole%2C membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Sucrose/H+ symporter%2C plant (InterPro:IPR005989)%2C Major facilitator superfamily MFS-1 (InterPro:IPR011701)%2C Major facilitator superfamily%2C general substrate transporter (InterPro:IPR016196)%3B BEST Arabidopsis thaliana protein match is: sucrose-proton symporter 2 (TAIR:AT1G22710.1)%3B Has 2568 Blast hits to 2441 proteins in 632 species: Archae - 30%3B Bacteria - 1104%3B Metazoa - 451%3B Fungi - 193%3B Plants - 403%3B Viruses - 0%3B Other Eukaryotes - 387 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:10948254, PMID:10899981, PMID:16146522, PMID:16581873, PMID:18618272, PMID:17431028, PMID:19915863, PMID:21668536, PMID:21972845, PMID:22253225, PMID:22311778, PMID:23383346, PMID:24406629, PMID:24814155, locus:2024422; locus_type=protein_coding
AT1TE10550	chr1:003247448	0.0	W/3247448-3247570	AT1TE10550 transposable_element AT1TE10550 ID=AT1TE10550; Name=AT1TE10550; Alias=HELITRONY3A
AT1G04753.1	chr1:003247779	0.0	C/3247779-3248058	AT1G04753.1 lnc_RNA AT1G04753 ID=AT1G04753.1; Parent=AT1G04753; Name=AT1G04753.1; locus_type=long_noncoding_rna
AT1TE10555	chr1:003250197	0.0	C/3250197-3250578	AT1TE10555 transposable_element AT1TE10555 ID=AT1TE10555; Name=AT1TE10555; Alias=ATREP11
AT1TE10560	chr1:003250579	0.0	W/3250579-3251485	AT1TE10560 transposable_element AT1TE10560 ID=AT1TE10560; Name=AT1TE10560; Alias=ATREP1
AT1TE10565	chr1:003251486	0.0	W/3251486-3252211	AT1TE10565 transposable_element AT1TE10565 ID=AT1TE10565; Name=AT1TE10565; Alias=HELITRONY3
AT1TE10570	chr1:003252265	0.0	C/3252265-3252343	AT1TE10570 transposable_element AT1TE10570 ID=AT1TE10570; Name=AT1TE10570; Alias=ATDNAI27T9C
AT1G09970.1	chr1:003252408	0.0	W/3252408-3254964,3255055-3255428	AT1G09970.1 CDS AT1G09970 ID=AT1G09970.1; Parent=AT1G09970; Name=AT1G09970.1; Note=Leucine-rich receptor-like protein kinase family protein; curator_summary=RLK7 belongs to a leucine-rich repeat class of receptor-likekinase (LRR-RLKs). It is involved in the control of germination speed and the tolerance to oxidant stress.; conf_class=2; symbol=LRR XI-23; computational_description=LRR XI-23%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%2C transmembrane receptor protein tyrosine kinase signaling pathway%2C protein amino acid autophosphorylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Leucine-rich repeat-containing N-terminal domain%2C type 2 (InterPro:IPR013210)%2C Leucine-rich repeat (InterPro:IPR001611)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT3G19700.1)%3B Has 209037 Blast hits to 140396 proteins in 4701 species: Archae - 173%3B Bacteria - 22554%3B Metazoa - 63531%3B Fungi - 11010%3B Plants - 85931%3B Viruses - 478%3B Other Eukaryotes - 25360 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12972053, PMID:14576160, PMID:14535885, PMID:15194820, PMID:15247402, PMID:15937229, PMID:16307366, PMID:16395588, PMID:16531467, PMID:16626450, PMID:16766691, PMID:16941220, PMID:16920880, PMID:17142483, PMID:18192438, PMID:18552232, PMID:18650403, PMID:20179141, PMID:20736450, PMID:20811905, PMID:21431781, PMID:21477822, PMID:25188390, locus:2024432; locus_type=protein_coding
AT1G09970.2	chr1:003252408	0.0	W/3252408-3254964,3255052-3255428	AT1G09970.2 CDS AT1G09970 ID=AT1G09970.2; Parent=AT1G09970; Name=AT1G09970.2; Note=Leucine-rich receptor-like protein kinase family protein; curator_summary=RLK7 belongs to a leucine-rich repeat class of receptor-likekinase (LRR-RLKs). It is involved in the control of germination speed and the tolerance to oxidant stress.; conf_class=1; symbol=LRR XI-23; computational_description=LRR XI-23%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%2C transmembrane receptor protein tyrosine kinase signaling pathway%2C protein amino acid autophosphorylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Leucine-rich repeat-containing N-terminal domain%2C type 2 (InterPro:IPR013210)%2C Leucine-rich repeat (InterPro:IPR001611)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT3G19700.1)%3B Has 209037 Blast hits to 140396 proteins in 4701 species: Archae - 173%3B Bacteria - 22554%3B Metazoa - 63531%3B Fungi - 11010%3B Plants - 85931%3B Viruses - 478%3B Other Eukaryotes - 25360 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12972053, PMID:14576160, PMID:14535885, PMID:15194820, PMID:15247402, PMID:15937229, PMID:16307366, PMID:16395588, PMID:16531467, PMID:16626450, PMID:16766691, PMID:16941220, PMID:16920880, PMID:17142483, PMID:18192438, PMID:18552232, PMID:18650403, PMID:20179141, PMID:20736450, PMID:20811905, PMID:21431781, PMID:21477822, PMID:25188390, locus:2024432; locus_type=protein_coding
AT1G09980.1	chr1:003256541	0.0	C/3256541-3256843,3256935-3256985,3257086-3257291,3257385-3257643,3257878-3258126,3258208-3258267,3258354-3258537,3258637-3258770,3258865-3259104,3259495-3259549,3259642-3259895,3260178-3260332,3260509-3260594,3260694-3260866	AT1G09980.1 CDS AT1G09980 ID=AT1G09980.1; Parent=AT1G09980; Name=AT1G09980.1; Note=Putative serine esterase family protein; conf_class=2; computational_description=Putative serine esterase family protein%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3657 (InterPro:IPR022122)%2C Protein of unknown function DUF676%2C hydrolase-like (InterPro:IPR007751)%3B BEST Arabidopsis thaliana protein match is: Putative serine esterase family protein (TAIR:AT1G58350.2)%3B Has 480 Blast hits to 383 proteins in 96 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 283%3B Fungi - 2%3B Plants - 87%3B Viruses - 0%3B Other Eukaryotes - 108 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15659355, PMID:15937229, PMID:18775970, locus:2201936; locus_type=protein_coding
AT1G09980.2	chr1:003256541	0.0	C/3256541-3256843,3256935-3256985,3257086-3257291,3257385-3257643,3257878-3258126,3258208-3258267,3258354-3258537,3258637-3258767,3258865-3259104,3259495-3259549,3259642-3259895,3260178-3260332,3260509-3260594,3260694-3260866	AT1G09980.2 CDS AT1G09980 ID=AT1G09980.2; Parent=AT1G09980; Name=AT1G09980.2; Note=Putative serine esterase family protein; conf_class=2; computational_description=Putative serine esterase family protein%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3657 (InterPro:IPR022122)%2C Protein of unknown function DUF676%2C hydrolase-like (InterPro:IPR007751)%3B BEST Arabidopsis thaliana protein match is: Putative serine esterase family protein (TAIR:AT1G58350.2)%3B Has 480 Blast hits to 383 proteins in 96 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 283%3B Fungi - 2%3B Plants - 87%3B Viruses - 0%3B Other Eukaryotes - 108 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15659355, PMID:15937229, PMID:18775970, locus:2201936; locus_type=protein_coding
AT1G09980.3	chr1:003256541	0.0	C/3256541-3256843,3256935-3256985,3257086-3257291,3257385-3257643,3257878-3258126,3258208-3258267,3258354-3258537,3258637-3258770,3258865-3259104,3259495-3259549,3259642-3259895,3260178-3260332,3260509-3260594,3260694-3260866	AT1G09980.3 CDS AT1G09980 ID=AT1G09980.3; Parent=AT1G09980; Name=AT1G09980.3; Note=Putative serine esterase family protein; Dbxref=PMID:15659355, PMID:15937229, PMID:18775970, locus:2201936; computational_description=Putative serine esterase family protein%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3657 (InterPro:IPR022122)%2C Protein of unknown function DUF676%2C hydrolase-like (InterPro:IPR007751)%3B BEST Arabidopsis thaliana protein match is: Putative serine esterase family protein (TAIR:AT1G58350.2)%3B Has 480 Blast hits to 383 proteins in 96 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 283%3B Fungi - 2%3B Plants - 87%3B Viruses - 0%3B Other Eukaryotes - 108 (source: NCBI BLink).; locus_type=protein_coding
AT1TE10600	chr1:003262077	0.0	C/3262077-3262304	AT1TE10600 transposable_element AT1TE10600 ID=AT1TE10600; Name=AT1TE10600; Alias=ATIS112A
AT1TE10605	chr1:003262496	0.0	C/3262496-3262581	AT1TE10605 transposable_element AT1TE10605 ID=AT1TE10605; Name=AT1TE10605; Alias=ATIS112A
AT1G09995.1	chr1:003262750	0.0	C/3262750-3262908,3263351-3263458	AT1G09995.1 CDS AT1G09995 ID=AT1G09995.1; Parent=AT1G09995; Name=AT1G09995.1; Note=DNA repair DEAD helicase RAD3/XP-D subfamily protein; conf_class=1; computational_description=DNA repair DEAD helicase RAD3/XP-D subfamily protein%3B BEST Arabidopsis thaliana protein match is: RAD3-like DNA-binding helicase protein (TAIR:AT1G79890.1)%3B Has 19 Blast hits to 19 proteins in 7 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 19%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:504956155; locus_type=protein_coding
AT1G09995.3	chr1:003262750	0.0	C/3262750-3262908,3263351-3263458	AT1G09995.3 CDS AT1G09995 ID=AT1G09995.3; Parent=AT1G09995; Name=AT1G09995.3; Note=DNA repair DEAD helicase RAD3/XP-D subfamily protein; Dbxref=locus:504956155; computational_description=DNA repair DEAD helicase RAD3/XP-D subfamily protein%3B BEST Arabidopsis thaliana protein match is: RAD3-like DNA-binding helicase protein (TAIR:AT1G79890.1)%3B Has 19 Blast hits to 19 proteins in 7 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 19%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; locus_type=protein_coding
AT1G09995.5	chr1:003262750	0.0	C/3262750-3262908,3263351-3263458	AT1G09995.5 CDS AT1G09995 ID=AT1G09995.5; Parent=AT1G09995; Name=AT1G09995.5; Note=DNA repair DEAD helicase RAD3/XP-D subfamily protein; Dbxref=locus:504956155; computational_description=DNA repair DEAD helicase RAD3/XP-D subfamily protein%3B BEST Arabidopsis thaliana protein match is: RAD3-like DNA-binding helicase protein (TAIR:AT1G79890.1)%3B Has 19 Blast hits to 19 proteins in 7 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 19%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; locus_type=protein_coding
AT1G09995.2	chr1:003262884	0.0	C/3262884-3263018,3263351-3263458	AT1G09995.2 CDS AT1G09995 ID=AT1G09995.2; Parent=AT1G09995; Name=AT1G09995.2; Note=DNA repair DEAD helicase RAD3/XP-D subfamily protein; computational_description=DNA repair DEAD helicase RAD3/XP-D subfamily protein%3B BEST Arabidopsis thaliana protein match is: RAD3-like DNA-binding helicase protein (TAIR:AT1G79890.1)%3B Has 19 Blast hits to 19 proteins in 7 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 19%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=locus:504956155; locus_type=protein_coding
AT1G09995.4	chr1:003262884	0.0	C/3262884-3263018,3263351-3263458	AT1G09995.4 CDS AT1G09995 ID=AT1G09995.4; Parent=AT1G09995; Name=AT1G09995.4; Note=DNA repair DEAD helicase RAD3/XP-D subfamily protein; computational_description=DNA repair DEAD helicase RAD3/XP-D subfamily protein%3B BEST Arabidopsis thaliana protein match is: RAD3-like DNA-binding helicase protein (TAIR:AT1G79890.1)%3B Has 19 Blast hits to 19 proteins in 7 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 19%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=locus:504956155; locus_type=protein_coding
AT1TE10610	chr1:003263540	0.0	C/3263540-3263797	AT1TE10610 transposable_element AT1TE10610 ID=AT1TE10610; Name=AT1TE10610; Alias=ATIS112A
AT1G10000.1	chr1:003263877	0.0	C/3263877-3264788	AT1G10000.1 CDS AT1G10000 ID=AT1G10000.1; Parent=AT1G10000; Name=AT1G10000.1; Note=Ribonuclease H-like superfamily protein; conf_class=4; computational_description=Ribonuclease H-like superfamily protein%3B FUNCTIONS IN: ribonuclease H activity%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B EXPRESSED IN: 18 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase%2C ribonuclease H fold (InterPro:IPR012337)%2C RNA-directed DNA polymerase (reverse transcriptase)%2C related (InterPro:IPR015706)%2C Ribonuclease H (InterPro:IPR002156)%3B BEST Arabidopsis thaliana protein match is: Beta-galactosidase related protein (TAIR:AT2G06845.1)%3B Has 585 Blast hits to 585 proteins in 17 species: Archae - 2%3B Bacteria - 0%3B Metazoa - 1%3B Fungi - 0%3B Plants - 581%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:11752263, PMID:14681437, PMID:21838868, locus:2201941; locus_type=protein_coding
AT1TE10615	chr1:003264447	0.0	C/3264447-3264824	AT1TE10615 transposable_element AT1TE10615 ID=AT1TE10615; Name=AT1TE10615; Alias=ATLINE1_6
AT1G10010.2	chr1:003265973	0.0	W/3265973-3266297,3266979-3267072,3267187-3267401,3267500-3267642,3267881-3268108,3268301-3268726	AT1G10010.2 CDS AT1G10010 ID=AT1G10010.2; Parent=AT1G10010; Name=AT1G10010.2; Note=amino acid permease 8; symbol=AAP8; Alias=ATAAP8; full_name=amino acid permease 8; curator_summary=Encodes a high affinity amino acid transporter that is probably responsible for import of organic nitrogen into developing seeds. One of eight gene family members that encode amino acid permeases. Most closely related to AAP1 (75%25) identity.; computational_description=amino acid permease 8 (AAP8)%3B CONTAINS InterPro DOMAIN/s: Amino acid transporter%2C transmembrane (InterPro:IPR013057)%3B BEST Arabidopsis thaliana protein match is: amino acid permease 1 (TAIR:AT1G58360.1)%3B Has 2959 Blast hits to 2943 proteins in 246 species: Archae - 0%3B Bacteria - 24%3B Metazoa - 771%3B Fungi - 529%3B Plants - 1378%3B Viruses - 0%3B Other Eukaryotes - 257 (source: NCBI BLink).; Dbxref=PMID:12244056, PMID:12969422, PMID:15361141, PMID:16299181, PMID:17915010, PMID:20226671, PMID:20736450, PMID:22645574, PMID:22935196, PMID:23831821, locus:2201871; locus_type=protein_coding
AT1G10010.1	chr1:003265976	0.0	W/3265976-3266297,3266979-3267072,3267187-3267401,3267500-3267642,3267881-3268108,3268301-3268726	AT1G10010.1 CDS AT1G10010 ID=AT1G10010.1; Parent=AT1G10010; Name=AT1G10010.1; Note=amino acid permease 8; curator_summary=Encodes a high affinity amino acid transporter that is probably responsible for import of organic nitrogen into developing seeds. One of eight gene family members that encode amino acid permeases. Most closely related to AAP1 (75%25) identity.; conf_class=6; symbol=AAP8; Alias=ATAAP8; full_name=amino acid permease 8; computational_description=amino acid permease 8 (AAP8)%3B CONTAINS InterPro DOMAIN/s: Amino acid transporter%2C transmembrane (InterPro:IPR013057)%3B BEST Arabidopsis thaliana protein match is: amino acid permease 1 (TAIR:AT1G58360.1)%3B Has 2959 Blast hits to 2943 proteins in 246 species: Archae - 0%3B Bacteria - 24%3B Metazoa - 771%3B Fungi - 529%3B Plants - 1378%3B Viruses - 0%3B Other Eukaryotes - 257 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:12244056, PMID:12969422, PMID:15361141, PMID:16299181, PMID:17915010, PMID:20226671, PMID:20736450, PMID:22645574, PMID:22935196, PMID:23831821, locus:2201871; locus_type=protein_coding
AT1G10020.1	chr1:003269939	0.0	C/3269939-3270698,3271107-3271732	AT1G10020.1 CDS AT1G10020 ID=AT1G10020.1; Parent=AT1G10020; Name=AT1G10020.1; Note=formin-like protein (DUF1005); conf_class=2; computational_description=Protein of unknown function (DUF1005)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1005 (InterPro:IPR010410)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1005) (TAIR:AT4G29310.1)%3B Has 158 Blast hits to 158 proteins in 22 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 4%3B Fungi - 6%3B Plants - 144%3B Viruses - 0%3B Other Eukaryotes - 4 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12481097, PMID:15173112, locus:2201881; locus_type=protein_coding
AT1G10030.1	chr1:003273972	0.0	W/3273972-3274086,3275254-3275460,3275564-3275631	AT1G10030.1 CDS AT1G10030 ID=AT1G10030.1; Parent=AT1G10030; Name=AT1G10030.1; Note=ergosterol biosynthesis protein; conf_class=2; symbol=ERG28; full_name=homolog of yeast ergosterol28; computational_description=homolog of yeast ergosterol28 (ERG28)%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%2C integral to membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Erg28-like (InterPro:IPR005352)%3B Has 223 Blast hits to 223 proteins in 105 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 67%3B Fungi - 94%3B Plants - 48%3B Viruses - 0%3B Other Eukaryotes - 14 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15173112, PMID:18650403, PMID:24326590, locus:2201891; locus_type=protein_coding
AT1G10040.1	chr1:003276108	0.0	C/3276108-3276179,3276262-3276359,3276437-3276566,3276657-3276709,3276852-3276907,3277001-3277161,3277332-3277586,3277765-3277835,3278045-3278112,3278190-3278464	AT1G10040.1 CDS AT1G10040 ID=AT1G10040.1; Parent=AT1G10040; Name=AT1G10040.1; Note=alpha/beta-Hydrolases superfamily protein; conf_class=3; computational_description=alpha/beta-Hydrolases superfamily protein%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF676%2C hydrolase-like (InterPro:IPR007751)%3B BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G25770.1)%3B Has 823 Blast hits to 815 proteins in 221 species: Archae - 0%3B Bacteria - 56%3B Metazoa - 168%3B Fungi - 260%3B Plants - 184%3B Viruses - 0%3B Other Eukaryotes - 155 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16928278, PMID:20736450, locus:2201901; locus_type=protein_coding
AT1G10040.2	chr1:003276124	0.0	C/3276124-3276179,3276258-3276359,3276437-3276566,3276657-3276709,3276852-3276907,3277001-3277161,3277332-3277586,3277765-3277835,3278045-3278112,3278190-3278464	AT1G10040.2 CDS AT1G10040 ID=AT1G10040.2; Parent=AT1G10040; Name=AT1G10040.2; Note=alpha/beta-Hydrolases superfamily protein; conf_class=3; computational_description=alpha/beta-Hydrolases superfamily protein%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF676%2C hydrolase-like (InterPro:IPR007751)%3B BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G25770.1)%3B Has 823 Blast hits to 815 proteins in 221 species: Archae - 0%3B Bacteria - 56%3B Metazoa - 168%3B Fungi - 260%3B Plants - 184%3B Viruses - 0%3B Other Eukaryotes - 155 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16928278, PMID:20736450, locus:2201901; locus_type=protein_coding
AT1G10050.3	chr1:003279075	0.0	W/3279075-3279156,3279256-3279607,3279690-3279849,3280286-3280632,3280715-3280874,3280971-3281317,3281440-3281617,3281701-3282246,3282329-3283444	AT1G10050.3 CDS AT1G10050 ID=AT1G10050.3; Parent=AT1G10050; Name=AT1G10050.3; Note=glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein; curator_summary=Encodes a putative glycosyl hydrolase family 10 protein (xylanase).; computational_description=glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein%3B FUNCTIONS IN: endo-1%2C4-beta-xylanase activity%2C hydrolase activity%2C hydrolyzing O-glycosyl compounds%3B INVOLVED IN: carbohydrate metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Glycoside hydrolase%2C family 10 (InterPro:IPR001000)%2C Carbohydrate-binding%2C CenC-like (InterPro:IPR003305)%2C Glycoside hydrolase%2C catalytic core (InterPro:IPR017853)%2C Glycoside hydrolase%2C subgroup%2C catalytic core (InterPro:IPR013781)%2C Galactose-binding domain-like (InterPro:IPR008979)%3B BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (TAIR:AT1G58370.1)%3B Has 2595 Blast hits to 2245 proteins in 443 species: Archae - 10%3B Bacteria - 1438%3B Metazoa - 33%3B Fungi - 351%3B Plants - 403%3B Viruses - 0%3B Other Eukaryotes - 360 (source: NCBI BLink).; Dbxref=PMID:12154138, PMID:15047901, PMID:16709196, PMID:18650403, PMID:18775970, locus:2201911; locus_type=protein_coding
AT1G10050.1	chr1:003279270	0.0	W/3279270-3279607,3279690-3279849,3280286-3280632,3280715-3280874,3280971-3281317,3281440-3281617,3281701-3282246,3282329-3283444	AT1G10050.1 CDS AT1G10050 ID=AT1G10050.1; Parent=AT1G10050; Name=AT1G10050.1; Note=glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein; curator_summary=Encodes a putative glycosyl hydrolase family 10 protein (xylanase).; conf_class=5; computational_description=glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein%3B FUNCTIONS IN: endo-1%2C4-beta-xylanase activity%2C hydrolase activity%2C hydrolyzing O-glycosyl compounds%3B INVOLVED IN: carbohydrate metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Glycoside hydrolase%2C family 10 (InterPro:IPR001000)%2C Carbohydrate-binding%2C CenC-like (InterPro:IPR003305)%2C Glycoside hydrolase%2C catalytic core (InterPro:IPR017853)%2C Glycoside hydrolase%2C subgroup%2C catalytic core (InterPro:IPR013781)%2C Galactose-binding domain-like (InterPro:IPR008979)%3B BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (TAIR:AT1G58370.1)%3B Has 2595 Blast hits to 2245 proteins in 443 species: Archae - 10%3B Bacteria - 1438%3B Metazoa - 33%3B Fungi - 351%3B Plants - 403%3B Viruses - 0%3B Other Eukaryotes - 360 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:12154138, PMID:15047901, PMID:16709196, PMID:18650403, PMID:18775970, locus:2201911; locus_type=protein_coding
AT1G10050.2	chr1:003279270	0.0	W/3279270-3279607,3279690-3279849,3280286-3280632,3280715-3280874,3280971-3281317,3281440-3281617,3281701-3282246,3282329-3283444	AT1G10050.2 CDS AT1G10050 ID=AT1G10050.2; Parent=AT1G10050; Name=AT1G10050.2; Note=glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein; Dbxref=PMID:12154138, PMID:15047901, PMID:16709196, PMID:18650403, PMID:18775970, locus:2201911; curator_summary=Encodes a putative glycosyl hydrolase family 10 protein (xylanase).; computational_description=glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein%3B FUNCTIONS IN: endo-1%2C4-beta-xylanase activity%2C hydrolase activity%2C hydrolyzing O-glycosyl compounds%3B INVOLVED IN: carbohydrate metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Glycoside hydrolase%2C family 10 (InterPro:IPR001000)%2C Carbohydrate-binding%2C CenC-like (InterPro:IPR003305)%2C Glycoside hydrolase%2C catalytic core (InterPro:IPR017853)%2C Glycoside hydrolase%2C subgroup%2C catalytic core (InterPro:IPR013781)%2C Galactose-binding domain-like (InterPro:IPR008979)%3B BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (TAIR:AT1G58370.1)%3B Has 2595 Blast hits to 2245 proteins in 443 species: Archae - 10%3B Bacteria - 1438%3B Metazoa - 33%3B Fungi - 351%3B Plants - 403%3B Viruses - 0%3B Other Eukaryotes - 360 (source: NCBI BLink).; locus_type=protein_coding
AT1G10060.4	chr1:003284157	0.0	W/3284157-3284501,3284652-3284725,3285166-3285340,3285425-3285601,3285687-3285818,3285897-3285995,3286092-3286208,3286304-3286399,3286534-3286728	AT1G10060.4 CDS AT1G10060 ID=AT1G10060.4; Parent=AT1G10060; Name=AT1G10060.4; Note=branched-chain amino acid transaminase 1; symbol=BCAT-1; Alias=ATBCAT-1, branched-chain amino acid transaminase 1, BCAT1, branched-chain amino acid transferase 1; full_name=branched-chain amino acid transaminase 1; curator_summary=encodes a mitochondrial branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.; computational_description=branched-chain amino acid transaminase 1 (BCAT-1)%3B FUNCTIONS IN: branched-chain-amino-acid transaminase activity%2C protein binding%2C catalytic activity%3B INVOLVED IN: branched chain family amino acid metabolic process%2C metabolic process%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 15 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Aminotransferase%2C class IV (InterPro:IPR001544)%2C Aminotransferase%2C class IV%2C conserved site (InterPro:IPR018300)%2C Branched-chain amino acid aminotransferase II (InterPro:IPR005786)%3B BEST Arabidopsis thaliana protein match is: branched-chain amino acid transaminase 2 (TAIR:AT1G10070.2)%3B Has 6519 Blast hits to 6519 proteins in 2279 species: Archae - 103%3B Bacteria - 4487%3B Metazoa - 263%3B Fungi - 384%3B Plants - 208%3B Viruses - 0%3B Other Eukaryotes - 1074 (source: NCBI BLink).; Dbxref=PMID:12068099, PMID:12805589, PMID:14973164, PMID:17056707, PMID:17122072, PMID:17580301, PMID:18375600, PMID:20736450, PMID:23073694, PMID:24368787, locus:2201931; locus_type=protein_coding
AT1G10060.5	chr1:003284157	0.0	W/3284157-3284501,3284652-3284725,3285166-3285340,3285425-3285601,3285687-3285818,3285897-3285995,3286092-3286208,3286304-3286399,3286534-3286646,3286723-3286837	AT1G10060.5 CDS AT1G10060 ID=AT1G10060.5; Parent=AT1G10060; Name=AT1G10060.5; Note=branched-chain amino acid transaminase 1; symbol=BCAT-1; Alias=ATBCAT-1, branched-chain amino acid transaminase 1, BCAT1, branched-chain amino acid transferase 1; full_name=branched-chain amino acid transaminase 1; curator_summary=encodes a mitochondrial branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.; computational_description=branched-chain amino acid transaminase 1 (BCAT-1)%3B FUNCTIONS IN: branched-chain-amino-acid transaminase activity%2C protein binding%2C catalytic activity%3B INVOLVED IN: branched chain family amino acid metabolic process%2C metabolic process%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 15 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Aminotransferase%2C class IV (InterPro:IPR001544)%2C Aminotransferase%2C class IV%2C conserved site (InterPro:IPR018300)%2C Branched-chain amino acid aminotransferase II (InterPro:IPR005786)%3B BEST Arabidopsis thaliana protein match is: branched-chain amino acid transaminase 2 (TAIR:AT1G10070.2)%3B Has 6519 Blast hits to 6519 proteins in 2279 species: Archae - 103%3B Bacteria - 4487%3B Metazoa - 263%3B Fungi - 384%3B Plants - 208%3B Viruses - 0%3B Other Eukaryotes - 1074 (source: NCBI BLink).; Dbxref=PMID:12068099, PMID:12805589, PMID:14973164, PMID:17056707, PMID:17122072, PMID:17580301, PMID:18375600, PMID:20736450, PMID:23073694, PMID:24368787, locus:2201931; locus_type=protein_coding
AT1G10060.6	chr1:003284157	0.0	W/3284157-3284501,3284652-3284725,3285166-3285340,3285425-3285601,3285687-3285818,3285897-3285995,3286092-3286208,3286304-3286358,3286534-3286577	AT1G10060.6 CDS AT1G10060 ID=AT1G10060.6; Parent=AT1G10060; Name=AT1G10060.6; Note=branched-chain amino acid transaminase 1; symbol=BCAT-1; Alias=ATBCAT-1, branched-chain amino acid transaminase 1, BCAT1, branched-chain amino acid transferase 1; full_name=branched-chain amino acid transaminase 1; curator_summary=encodes a mitochondrial branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.; computational_description=branched-chain amino acid transaminase 1 (BCAT-1)%3B FUNCTIONS IN: branched-chain-amino-acid transaminase activity%2C protein binding%2C catalytic activity%3B INVOLVED IN: branched chain family amino acid metabolic process%2C metabolic process%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 15 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Aminotransferase%2C class IV (InterPro:IPR001544)%2C Aminotransferase%2C class IV%2C conserved site (InterPro:IPR018300)%2C Branched-chain amino acid aminotransferase II (InterPro:IPR005786)%3B BEST Arabidopsis thaliana protein match is: branched-chain amino acid transaminase 2 (TAIR:AT1G10070.2)%3B Has 6519 Blast hits to 6519 proteins in 2279 species: Archae - 103%3B Bacteria - 4487%3B Metazoa - 263%3B Fungi - 384%3B Plants - 208%3B Viruses - 0%3B Other Eukaryotes - 1074 (source: NCBI BLink).; Dbxref=PMID:12068099, PMID:12805589, PMID:14973164, PMID:17056707, PMID:17122072, PMID:17580301, PMID:18375600, PMID:20736450, PMID:23073694, PMID:24368787, locus:2201931; locus_type=protein_coding
AT1G10060.1	chr1:003284445	0.0	W/3284445-3284501,3284652-3284725,3285166-3285340,3285425-3285601,3285687-3285818,3285897-3285995,3286092-3286208,3286304-3286358,3286534-3286577	AT1G10060.1 CDS AT1G10060 ID=AT1G10060.1; Parent=AT1G10060; Name=AT1G10060.1; Note=branched-chain amino acid transaminase 1; curator_summary=encodes a mitochondrial branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.; conf_class=2; symbol=BCAT-1; Alias=ATBCAT-1, branched-chain amino acid transaminase 1, BCAT1, branched-chain amino acid transferase 1; full_name=branched-chain amino acid transaminase 1; computational_description=branched-chain amino acid transaminase 1 (BCAT-1)%3B FUNCTIONS IN: branched-chain-amino-acid transaminase activity%2C protein binding%2C catalytic activity%3B INVOLVED IN: branched chain family amino acid metabolic process%2C metabolic process%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 15 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Aminotransferase%2C class IV (InterPro:IPR001544)%2C Aminotransferase%2C class IV%2C conserved site (InterPro:IPR018300)%2C Branched-chain amino acid aminotransferase II (InterPro:IPR005786)%3B BEST Arabidopsis thaliana protein match is: branched-chain amino acid transaminase 2 (TAIR:AT1G10070.2)%3B Has 6519 Blast hits to 6519 proteins in 2279 species: Archae - 103%3B Bacteria - 4487%3B Metazoa - 263%3B Fungi - 384%3B Plants - 208%3B Viruses - 0%3B Other Eukaryotes - 1074 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12068099, PMID:12805589, PMID:14973164, PMID:17056707, PMID:17122072, PMID:17580301, PMID:18375600, PMID:20736450, PMID:23073694, PMID:24368787, locus:2201931; locus_type=protein_coding
AT1G10060.2	chr1:003284445	0.0	W/3284445-3284501,3284652-3284725,3285166-3285340,3285425-3285601,3285687-3285818,3285897-3285995,3286092-3286208,3286304-3286399,3286534-3286646,3286723-3286837	AT1G10060.2 CDS AT1G10060 ID=AT1G10060.2; Parent=AT1G10060; Name=AT1G10060.2; Note=branched-chain amino acid transaminase 1; curator_summary=encodes a mitochondrial branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.; conf_class=2; symbol=BCAT-1; Alias=ATBCAT-1, branched-chain amino acid transaminase 1, BCAT1, branched-chain amino acid transferase 1; full_name=branched-chain amino acid transaminase 1; computational_description=branched-chain amino acid transaminase 1 (BCAT-1)%3B FUNCTIONS IN: branched-chain-amino-acid transaminase activity%2C protein binding%2C catalytic activity%3B INVOLVED IN: branched chain family amino acid metabolic process%2C metabolic process%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 15 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Aminotransferase%2C class IV (InterPro:IPR001544)%2C Aminotransferase%2C class IV%2C conserved site (InterPro:IPR018300)%2C Branched-chain amino acid aminotransferase II (InterPro:IPR005786)%3B BEST Arabidopsis thaliana protein match is: branched-chain amino acid transaminase 2 (TAIR:AT1G10070.2)%3B Has 6519 Blast hits to 6519 proteins in 2279 species: Archae - 103%3B Bacteria - 4487%3B Metazoa - 263%3B Fungi - 384%3B Plants - 208%3B Viruses - 0%3B Other Eukaryotes - 1074 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12068099, PMID:12805589, PMID:14973164, PMID:17056707, PMID:17122072, PMID:17580301, PMID:18375600, PMID:20736450, PMID:23073694, PMID:24368787, locus:2201931; locus_type=protein_coding
AT1G10060.7	chr1:003284445	0.0	W/3284445-3284501,3284652-3284725,3285166-3285340,3285425-3285601,3285687-3285818,3285897-3285995,3286092-3286208,3286304-3286399,3286534-3286728	AT1G10060.7 CDS AT1G10060 ID=AT1G10060.7; Parent=AT1G10060; Name=AT1G10060.7; Note=branched-chain amino acid transaminase 1; symbol=BCAT-1; Alias=ATBCAT-1, branched-chain amino acid transaminase 1, BCAT1, branched-chain amino acid transferase 1; full_name=branched-chain amino acid transaminase 1; curator_summary=encodes a mitochondrial branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.; computational_description=branched-chain amino acid transaminase 1 (BCAT-1)%3B FUNCTIONS IN: branched-chain-amino-acid transaminase activity%2C protein binding%2C catalytic activity%3B INVOLVED IN: branched chain family amino acid metabolic process%2C metabolic process%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 15 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Aminotransferase%2C class IV (InterPro:IPR001544)%2C Aminotransferase%2C class IV%2C conserved site (InterPro:IPR018300)%2C Branched-chain amino acid aminotransferase II (InterPro:IPR005786)%3B BEST Arabidopsis thaliana protein match is: branched-chain amino acid transaminase 2 (TAIR:AT1G10070.2)%3B Has 6519 Blast hits to 6519 proteins in 2279 species: Archae - 103%3B Bacteria - 4487%3B Metazoa - 263%3B Fungi - 384%3B Plants - 208%3B Viruses - 0%3B Other Eukaryotes - 1074 (source: NCBI BLink).; Dbxref=PMID:12068099, PMID:12805589, PMID:14973164, PMID:17056707, PMID:17122072, PMID:17580301, PMID:18375600, PMID:20736450, PMID:23073694, PMID:24368787, locus:2201931; locus_type=protein_coding
AT1G10060.3	chr1:003285233	0.0	W/3285233-3285340,3285425-3285601,3285687-3285818,3285897-3285995,3286092-3286208,3286304-3286399,3286534-3286646,3286723-3286837	AT1G10060.3 CDS AT1G10060 ID=AT1G10060.3; Parent=AT1G10060; Name=AT1G10060.3; Note=branched-chain amino acid transaminase 1; curator_summary=encodes a mitochondrial branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.; conf_class=2; symbol=BCAT-1; Alias=ATBCAT-1, branched-chain amino acid transaminase 1, BCAT1, branched-chain amino acid transferase 1; full_name=branched-chain amino acid transaminase 1; computational_description=branched-chain amino acid transaminase 1 (BCAT-1)%3B FUNCTIONS IN: branched-chain-amino-acid transaminase activity%2C protein binding%2C catalytic activity%3B INVOLVED IN: branched chain family amino acid metabolic process%2C metabolic process%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 15 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Aminotransferase%2C class IV (InterPro:IPR001544)%2C Aminotransferase%2C class IV%2C conserved site (InterPro:IPR018300)%2C Branched-chain amino acid aminotransferase II (InterPro:IPR005786)%3B BEST Arabidopsis thaliana protein match is: branched-chain amino acid transaminase 2 (TAIR:AT1G10070.2)%3B Has 6519 Blast hits to 6519 proteins in 2279 species: Archae - 103%3B Bacteria - 4487%3B Metazoa - 263%3B Fungi - 384%3B Plants - 208%3B Viruses - 0%3B Other Eukaryotes - 1074 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12068099, PMID:12805589, PMID:14973164, PMID:17056707, PMID:17122072, PMID:17580301, PMID:18375600, PMID:20736450, PMID:23073694, PMID:24368787, locus:2201931; locus_type=protein_coding
AT1G10070.1	chr1:003288255	0.0	W/3288255-3288320,3288431-3288504,3288602-3288779,3288861-3289037,3289120-3289251,3289329-3289427,3289503-3289619,3289682-3289777,3289856-3289968,3290050-3290164	AT1G10070.1 CDS AT1G10070 ID=AT1G10070.1; Parent=AT1G10070; Name=AT1G10070.1; Note=branched-chain amino acid transaminase 2; curator_summary=Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant. Involved in cell wall development.; conf_class=2; symbol=BCAT-2; Alias=ATBCAT-2, branched-chain amino acid transaminase 2, BCAT2, branched-chain amino acid transferase 2; full_name=branched-chain amino acid transaminase 2; computational_description=branched-chain amino acid transaminase 2 (BCAT-2)%3B FUNCTIONS IN: branched-chain-amino-acid transaminase activity%2C catalytic activity%3B INVOLVED IN: branched chain family amino acid metabolic process%2C metabolic process%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Aminotransferase%2C class IV (InterPro:IPR001544)%2C Aminotransferase%2C class IV%2C conserved site (InterPro:IPR018300)%2C Branched-chain amino acid aminotransferase II (InterPro:IPR005786)%3B BEST Arabidopsis thaliana protein match is: branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (TAIR:AT5G65780.1)%3B Has 12153 Blast hits to 12153 proteins in 2497 species: Archae - 154%3B Bacteria - 7615%3B Metazoa - 264%3B Fungi - 416%3B Plants - 254%3B Viruses - 0%3B Other Eukaryotes - 3450 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12068099, PMID:12753580, PMID:12795706, PMID:14973164, PMID:15273295, PMID:15272001, PMID:15319476, PMID:15516340, PMID:16359384, PMID:16514558, PMID:17056707, PMID:18318836, PMID:18375600, PMID:18650403, PMID:18616834, PMID:18684332, PMID:18775970, PMID:18835996, PMID:23073694, PMID:23148846, PMID:24368787, locus:2201921; locus_type=protein_coding
AT1G10070.2	chr1:003288255	0.0	W/3288255-3288320,3288431-3288504,3288602-3288779,3288861-3289037,3289120-3289251,3289329-3289427,3289503-3289619,3289682-3289777,3289856-3289968,3290050-3290164	AT1G10070.2 CDS AT1G10070 ID=AT1G10070.2; Parent=AT1G10070; Name=AT1G10070.2; Note=branched-chain amino acid transaminase 2; curator_summary=Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant. Involved in cell wall development.; conf_class=2; symbol=BCAT-2; Alias=ATBCAT-2, branched-chain amino acid transaminase 2, BCAT2, branched-chain amino acid transferase 2; full_name=branched-chain amino acid transaminase 2; computational_description=branched-chain amino acid transaminase 2 (BCAT-2)%3B FUNCTIONS IN: branched-chain-amino-acid transaminase activity%2C catalytic activity%3B INVOLVED IN: branched chain family amino acid metabolic process%2C metabolic process%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Aminotransferase%2C class IV (InterPro:IPR001544)%2C Aminotransferase%2C class IV%2C conserved site (InterPro:IPR018300)%2C Branched-chain amino acid aminotransferase II (InterPro:IPR005786)%3B BEST Arabidopsis thaliana protein match is: branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (TAIR:AT5G65780.1)%3B Has 12153 Blast hits to 12153 proteins in 2497 species: Archae - 154%3B Bacteria - 7615%3B Metazoa - 264%3B Fungi - 416%3B Plants - 254%3B Viruses - 0%3B Other Eukaryotes - 3450 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12068099, PMID:12753580, PMID:12795706, PMID:14973164, PMID:15273295, PMID:15272001, PMID:15319476, PMID:15516340, PMID:16359384, PMID:16514558, PMID:17056707, PMID:18318836, PMID:18375600, PMID:18650403, PMID:18616834, PMID:18684332, PMID:18775970, PMID:18835996, PMID:23073694, PMID:23148846, PMID:24368787, locus:2201921; locus_type=protein_coding
AT1G10070.3	chr1:003288672	0.0	W/3288672-3288779,3288861-3289037,3289120-3289251,3289329-3289427,3289503-3289619,3289682-3289777,3289856-3289968,3290050-3290164	AT1G10070.3 CDS AT1G10070 ID=AT1G10070.3; Parent=AT1G10070; Name=AT1G10070.3; Note=branched-chain amino acid transaminase 2; curator_summary=Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant. Involved in cell wall development.; conf_class=2; symbol=BCAT-2; Alias=ATBCAT-2, branched-chain amino acid transaminase 2, BCAT2, branched-chain amino acid transferase 2; full_name=branched-chain amino acid transaminase 2; computational_description=branched-chain amino acid transaminase 2 (BCAT-2)%3B FUNCTIONS IN: branched-chain-amino-acid transaminase activity%2C catalytic activity%3B INVOLVED IN: branched chain family amino acid metabolic process%2C metabolic process%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Aminotransferase%2C class IV (InterPro:IPR001544)%2C Aminotransferase%2C class IV%2C conserved site (InterPro:IPR018300)%2C Branched-chain amino acid aminotransferase II (InterPro:IPR005786)%3B BEST Arabidopsis thaliana protein match is: branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (TAIR:AT5G65780.1)%3B Has 12153 Blast hits to 12153 proteins in 2497 species: Archae - 154%3B Bacteria - 7615%3B Metazoa - 264%3B Fungi - 416%3B Plants - 254%3B Viruses - 0%3B Other Eukaryotes - 3450 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12068099, PMID:12753580, PMID:12795706, PMID:14973164, PMID:15273295, PMID:15272001, PMID:15319476, PMID:15516340, PMID:16359384, PMID:16514558, PMID:17056707, PMID:18318836, PMID:18375600, PMID:18650403, PMID:18616834, PMID:18684332, PMID:18775970, PMID:18835996, PMID:23073694, PMID:23148846, PMID:24368787, locus:2201921; locus_type=protein_coding
AT1G10090.1	chr1:003290572	0.0	C/3290572-3290886,3290976-3291209,3291679-3291954,3292051-3292327,3292599-3292897,3293270-3293455,3294130-3294339,3294462-3294525,3294676-3294822,3294991-3295271	AT1G10090.1 CDS AT1G10090 ID=AT1G10090.1; Parent=AT1G10090; Name=AT1G10090.1; Note=Early-responsive to dehydration stress protein (ERD4); conf_class=2; computational_description=Early-responsive to dehydration stress protein (ERD4)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%2C membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864)%3B BEST Arabidopsis thaliana protein match is: lipases%3Bhydrolases%2C acting on ester bonds (TAIR:AT1G58520.1)%3B Has 1417 Blast hits to 1261 proteins in 193 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 180%3B Fungi - 691%3B Plants - 423%3B Viruses - 0%3B Other Eukaryotes - 123 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15341633, PMID:16607029, PMID:18650403, PMID:18775970, locus:2201876; locus_type=protein_coding
AT1G10095.1	chr1:003297478	0.0	C/3297478-3297597,3297756-3297992,3298340-3298390,3298489-3298572,3298745-3298822,3299054-3299122,3299360-3299450,3299633-3299743,3299838-3300176,3300271-3300353	AT1G10095.1 CDS AT1G10095 ID=AT1G10095.1; Parent=AT1G10095; Name=AT1G10095.1; Note=Protein prenylyltransferase superfamily protein; conf_class=1; computational_description=Protein prenylyltransferase superfamily protein%3B FUNCTIONS IN: protein prenyltransferase activity%3B INVOLVED IN: protein amino acid prenylation%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Protein prenyltransferase (InterPro:IPR008940)%2C Protein prenyltransferase%2C alpha subunit (InterPro:IPR002088)%3B Has 876 Blast hits to 751 proteins in 162 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 510%3B Fungi - 118%3B Plants - 152%3B Viruses - 0%3B Other Eukaryotes - 96 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:1005716686; locus_type=protein_coding
AT1G10095.2	chr1:003297675	0.0	C/3297675-3297992,3298340-3298390,3298489-3298572,3298745-3298822,3299054-3299122,3299360-3299450,3299633-3299743,3299838-3300176,3300271-3300353	AT1G10095.2 CDS AT1G10095 ID=AT1G10095.2; Parent=AT1G10095; Name=AT1G10095.2; Note=Protein prenylyltransferase superfamily protein; computational_description=Protein prenylyltransferase superfamily protein%3B FUNCTIONS IN: protein prenyltransferase activity%3B INVOLVED IN: protein amino acid prenylation%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Protein prenyltransferase (InterPro:IPR008940)%2C Protein prenyltransferase%2C alpha subunit (InterPro:IPR002088)%3B Has 876 Blast hits to 751 proteins in 162 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 510%3B Fungi - 118%3B Plants - 152%3B Viruses - 0%3B Other Eukaryotes - 96 (source: NCBI BLink).; Dbxref=locus:1005716686; locus_type=protein_coding
AT1G10095.3	chr1:003298230	0.0	C/3298230-3298244,3298340-3298390,3298489-3298572,3298745-3298822,3299054-3299122,3299360-3299450,3299633-3299743,3299838-3300176,3300271-3300353	AT1G10095.3 CDS AT1G10095 ID=AT1G10095.3; Parent=AT1G10095; Name=AT1G10095.3; Note=Protein prenylyltransferase superfamily protein; computational_description=Protein prenylyltransferase superfamily protein%3B FUNCTIONS IN: protein prenyltransferase activity%3B INVOLVED IN: protein amino acid prenylation%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Protein prenyltransferase (InterPro:IPR008940)%2C Protein prenyltransferase%2C alpha subunit (InterPro:IPR002088)%3B Has 876 Blast hits to 751 proteins in 162 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 510%3B Fungi - 118%3B Plants - 152%3B Viruses - 0%3B Other Eukaryotes - 96 (source: NCBI BLink).; Dbxref=locus:1005716686; locus_type=protein_coding
AT1G10095.4	chr1:003298334	0.0	C/3298334-3298390,3298489-3298572,3298745-3298822,3299054-3299122,3299360-3299450,3299633-3299743,3299838-3300176,3300271-3300353	AT1G10095.4 CDS AT1G10095 ID=AT1G10095.4; Parent=AT1G10095; Name=AT1G10095.4; Note=Protein prenylyltransferase superfamily protein; computational_description=Protein prenylyltransferase superfamily protein%3B FUNCTIONS IN: protein prenyltransferase activity%3B INVOLVED IN: protein amino acid prenylation%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Protein prenyltransferase (InterPro:IPR008940)%2C Protein prenyltransferase%2C alpha subunit (InterPro:IPR002088)%3B Has 876 Blast hits to 751 proteins in 162 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 510%3B Fungi - 118%3B Plants - 152%3B Viruses - 0%3B Other Eukaryotes - 96 (source: NCBI BLink).; Dbxref=locus:1005716686; locus_type=protein_coding
AT1G10100.1	chr1:003300697	0.0	C/3300697-3300836,3300967-3301098,3301200-3301254,3301328-3301489	AT1G10100.1 CDS AT1G10100 ID=AT1G10100.1; Parent=AT1G10100; Name=AT1G10100.1; Note=hypothetical protein; conf_class=9; computational_description=unknown protein%3B Has 9 Blast hits to 9 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 9%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*; Dbxref=PMID:20032078, locus:2201886; locus_type=protein_coding
AT1G04763.1	chr1:003302153	0.0	C/3302153-3302419	AT1G04763.1 lnc_RNA AT1G04763 ID=AT1G04763.1; Parent=AT1G04763; Name=AT1G04763.1; locus_type=long_noncoding_rna
AT1G04767.1	chr1:003302720	0.0	C/3302720-3303760	AT1G04767.1 antisense_lncRNA AT1G04767 ID=AT1G04767.1; Parent=AT1G04767; Name=AT1G04767.1; description=Natural antisense transcript overlaps with AT1G10110; Note=Natural antisense transcript overlaps with AT1G10110; locus_type=antisense_long_noncoding_rna
AT1G10110.1	chr1:003302739	0.0	W/3302739-3303938	AT1G10110.1 CDS AT1G10110 ID=AT1G10110.1; Parent=AT1G10110; Name=AT1G10110.1; Note=F-box family protein; conf_class=1; computational_description=F-box family protein%3B BEST Arabidopsis thaliana protein match is: F-box family protein with a domain of unknown function (DUF295) (TAIR:AT4G22165.1)%3B Has 235 Blast hits to 233 proteins in 3 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 235%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:20736450, locus:2201896; locus_type=protein_coding
AT1G10120.1	chr1:003304228	0.0	C/3304228-3304250,3304341-3304425,3304515-3304634,3304727-3304798,3304897-3304965,3305051-3305116,3305219-3305410,3305511-3305984	AT1G10120.1 CDS AT1G10120 ID=AT1G10120.1; Parent=AT1G10120; Name=AT1G10120.1; Note=basic helix-loop-helix (bHLH) DNA-binding superfamily protein; conf_class=1; Alias=CIB4, CRY2-interacting bHLH 4; computational_description=basic helix-loop-helix (bHLH) DNA-binding superfamily protein%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G68920.2)%3B Has 2297 Blast hits to 2289 proteins in 121 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 55%3B Fungi - 29%3B Plants - 2202%3B Viruses - 0%3B Other Eukaryotes - 9 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11118137, PMID:12679534, PMID:12897250, PMID:14600211, PMID:17420955, PMID:24377444, PMID:24130508, locus:2201906; locus_type=protein_coding
AT1G10120.2	chr1:003304228	0.0	C/3304228-3304250,3304341-3304425,3304515-3304634,3304727-3304798,3304897-3304965,3305051-3305116,3305219-3305410,3305511-3305984	AT1G10120.2 CDS AT1G10120 ID=AT1G10120.2; Parent=AT1G10120; Name=AT1G10120.2; Note=basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Alias=CIB4, CRY2-interacting bHLH 4; Dbxref=PMID:11118137, PMID:12679534, PMID:12897250, PMID:14600211, PMID:17420955, PMID:24377444, PMID:24130508, locus:2201906; computational_description=basic helix-loop-helix (bHLH) DNA-binding superfamily protein%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G68920.2)%3B Has 2297 Blast hits to 2289 proteins in 121 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 55%3B Fungi - 29%3B Plants - 2202%3B Viruses - 0%3B Other Eukaryotes - 9 (source: NCBI BLink).; locus_type=protein_coding
AT1G04773.1	chr1:003305948	0.0	W/3305948-3306688	AT1G04773.1 antisense_lncRNA AT1G04773 ID=AT1G04773.1; Parent=AT1G04773; Name=AT1G04773.1; description=Natural antisense transcript overlaps with AT1G10120; Note=Natural antisense transcript overlaps with AT1G10120; locus_type=antisense_long_noncoding_rna
AT1G10130.1	chr1:003311139	0.0	W/3311139-3311171,3311372-3311422,3311527-3311560,3311966-3311983,3312399-3312535,3312921-3312995,3313228-3313273,3313604-3313663,3313764-3313844,3314106-3314191,3314347-3314448,3314744-3314797,3315074-3315175,3315546-3315604,3315895-3316039,3316382-3316489,3316928-3317080,3317338-3317442,3317799-3317995,3318155-3318263,3318368-3318466,3318545-3318690,3318846-3318903,3319092-3319184,3319650-3319700,3319904-3320035,3320129-3320230,3320567-3320621,3320783-3320868,3320985-3321133,3321212-3321317,3321407-3321460,3321697-3321742,3321877-3321941	AT1G10130.1 CDS AT1G10130 ID=AT1G10130.1; Parent=AT1G10130; Name=AT1G10130.1; Note=endoplasmic reticulum-type calcium-transporting ATPase 3; curator_summary=Encodes a golgi localized P2A-type Ca2+ ATPase involved in Mn nutrition and homeostasis.; conf_class=3; symbol=ECA3; Alias=ATECA3, ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3; full_name=endoplasmic reticulum-type calcium-transporting ATPase 3; computational_description=endoplasmic reticulum-type calcium-transporting ATPase 3 (ECA3)%3B FUNCTIONS IN: manganese-transporting ATPase activity%2C calcium-transporting ATPase activity%2C calmodulin binding%3B INVOLVED IN: manganese ion transport%2C calcium ion transport%2C root development%2C manganese ion homeostasis%3B LOCATED IN: endomembrane system%2C Golgi apparatus%3B EXPRESSED IN: 27 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: ATPase%2C P-type%2C ATPase-associated domain (InterPro:IPR008250)%2C ATPase%2C P-type%2C calcium-transporting (InterPro:IPR005782)%2C ATPase%2C P-type%2C H+ transporting proton pump (InterPro:IPR000695)%2C ATPase%2C P-type cation-transporter%2C N-terminal (InterPro:IPR004014)%2C Haloacid dehalogenase-like hydrolase (InterPro:IPR005834)%2C ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757)%2C ATPase%2C P-type phosphorylation site (InterPro:IPR018303)%2C ATPase%2C P-type cation-transporter%2C C-terminal (InterPro:IPR006068)%3B BEST Arabidopsis thaliana protein match is: endomembrane-type CA-ATPase 4 (TAIR:AT1G07670.1)%3B Has 52019 Blast hits to 33942 proteins in 3233 species: Archae - 1100%3B Bacteria - 36533%3B Metazoa - 4334%3B Fungi - 2931%3B Plants - 2474%3B Viruses - 3%3B Other Eukaryotes - 4644 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10433975, PMID:11782485, PMID:11402198, PMID:12805592, PMID:16258015, PMID:18024560, PMID:18567829, PMID:18989364, locus:2201916; locus_type=protein_coding
AT1G10140.1	chr1:003322970	0.0	C/3322970-3323473	AT1G10140.1 CDS AT1G10140 ID=AT1G10140.1; Parent=AT1G10140; Name=AT1G10140.1; Note=Uncharacterized conserved protein UCP031279; conf_class=1; computational_description=Uncharacterised conserved protein UCP031279%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP031279 (InterPro:IPR016972)%3B BEST Arabidopsis thaliana protein match is: Uncharacterised conserved protein UCP031279 (TAIR:AT1G58420.1)%3B Has 69 Blast hits to 69 proteins in 15 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 64%3B Viruses - 0%3B Other Eukaryotes - 5 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14576160, PMID:16262716, PMID:16603661, PMID:18305208, PMID:18552355, PMID:18650403, PMID:18775970, PMID:20736450, locus:2012833; locus_type=protein_coding
AT1G10150.1	chr1:003326160	0.0	W/3326160-3327404	AT1G10150.1 CDS AT1G10150 ID=AT1G10150.1; Parent=AT1G10150; Name=AT1G10150.1; Note=Carbohydrate-binding protein; conf_class=1; computational_description=Carbohydrate-binding protein%3B FUNCTIONS IN: carbohydrate binding%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B BEST Arabidopsis thaliana protein match is: Carbohydrate-binding protein (TAIR:AT1G59510.1)%3B Has 114 Blast hits to 112 proteins in 22 species: Archae - 0%3B Bacteria - 3%3B Metazoa - 0%3B Fungi - 0%3B Plants - 110%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12529520, PMID:16258011, PMID:18305208, PMID:18650403, PMID:18775970, locus:2012803; locus_type=protein_coding
AT1G10155.1	chr1:003327637	0.0	C/3327637-3328036,3328171-3328262,3328386-3328448	AT1G10155.1 CDS AT1G10155 ID=AT1G10155.1; Parent=AT1G10155; Name=AT1G10155.1; Note=phloem protein 2-A10; conf_class=1; symbol=PP2-A10; Alias=ATPP2-A10, phloem protein 2-A10; full_name=phloem protein 2-A10; computational_description=phloem protein 2-A10 (PP2-A10)%3B BEST Arabidopsis thaliana protein match is: phloem protein 2-A9 (TAIR:AT1G31200.1)%3B Has 113 Blast hits to 113 proteins in 20 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 113%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12529520, locus:504956313; locus_type=protein_coding
AT1G10160.1	chr1:003328971	0.0	W/3328971-3333470	AT1G10160.1 CDS AT1G10160 ID=AT1G10160.1; Parent=AT1G10160; Name=AT1G10160.1; index=1; computational_description=non-LTR retrotransposon family (LINE)%2C has a 3.9e-39 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus); Dbxref=locus:2012738; Note=transposable_element_gene; locus_type=transposable_element_gene
AT1TE10830	chr1:003330818	0.0	W/3330818-3332277,3332713-3332913	AT1TE10830 transposable_element AT1TE10830 ID=AT1TE10830; Name=AT1TE10830; Alias=ATLINE2
AT1G10170.4	chr1:003333789	0.0	C/3333789-3333863,3333937-3337491	AT1G10170.4 CDS AT1G10170 ID=AT1G10170.4; Parent=AT1G10170; Name=AT1G10170.4; Note=NF-X-like 1; symbol=NFXL1; Alias=ATNFXL1, NF-X-like 1; full_name=NF-X-like 1; curator_summary=Encodes AtNFXL1%2C a homologue of the putative human transcription repressor NF-X1. Functions as a negative regulator of the trichothecene phytotoxin-induced defense response.; computational_description=NF-X-like 1 (NFXL1)%3B FUNCTIONS IN: zinc ion binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: in 6 processes%3B LOCATED IN: nucleus%3B EXPRESSED IN: 27 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C NF-X1-type (InterPro:IPR000967)%2C Zinc finger%2C PHD-type%2C conserved site (InterPro:IPR019786)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C PHD-finger (InterPro:IPR019787)%3B BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors%3Bzinc ion binding%3Bsequence-specific DNA binding transcription factors (TAIR:AT5G05660.1)%3B Has 6781 Blast hits to 3735 proteins in 261 species: Archae - 0%3B Bacteria - 123%3B Metazoa - 4814%3B Fungi - 547%3B Plants - 327%3B Viruses - 10%3B Other Eukaryotes - 960 (source: NCBI BLink).; Dbxref=PMID:11983057, PMID:12481097, PMID:16214899, PMID:16510518, PMID:16905136, PMID:18069941, PMID:18055584, PMID:18650403, PMID:18775970, PMID:19704430, PMID:20522174, PMID:22073231, locus:2012753; locus_type=protein_coding
AT1G10170.1	chr1:003333925	0.0	C/3333925-3337491	AT1G10170.1 CDS AT1G10170 ID=AT1G10170.1; Parent=AT1G10170; Name=AT1G10170.1; Note=NF-X-like 1; curator_summary=Encodes AtNFXL1%2C a homologue of the putative human transcription repressor NF-X1. Functions as a negative regulator of the trichothecene phytotoxin-induced defense response.; conf_class=1; symbol=NFXL1; Alias=ATNFXL1, NF-X-like 1; full_name=NF-X-like 1; computational_description=NF-X-like 1 (NFXL1)%3B FUNCTIONS IN: zinc ion binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: in 6 processes%3B LOCATED IN: nucleus%3B EXPRESSED IN: 27 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C NF-X1-type (InterPro:IPR000967)%2C Zinc finger%2C PHD-type%2C conserved site (InterPro:IPR019786)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C PHD-finger (InterPro:IPR019787)%3B BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors%3Bzinc ion binding%3Bsequence-specific DNA binding transcription factors (TAIR:AT5G05660.1)%3B Has 6781 Blast hits to 3735 proteins in 261 species: Archae - 0%3B Bacteria - 123%3B Metazoa - 4814%3B Fungi - 547%3B Plants - 327%3B Viruses - 10%3B Other Eukaryotes - 960 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11983057, PMID:12481097, PMID:16214899, PMID:16510518, PMID:16905136, PMID:18069941, PMID:18055584, PMID:18650403, PMID:18775970, PMID:19704430, PMID:20522174, PMID:22073231, locus:2012753; locus_type=protein_coding
AT1G10170.2	chr1:003333925	0.0	C/3333925-3337029,3337246-3337491	AT1G10170.2 CDS AT1G10170 ID=AT1G10170.2; Parent=AT1G10170; Name=AT1G10170.2; Note=NF-X-like 1; symbol=NFXL1; Alias=ATNFXL1, NF-X-like 1; full_name=NF-X-like 1; curator_summary=Encodes AtNFXL1%2C a homologue of the putative human transcription repressor NF-X1. Functions as a negative regulator of the trichothecene phytotoxin-induced defense response.; computational_description=NF-X-like 1 (NFXL1)%3B FUNCTIONS IN: zinc ion binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: in 6 processes%3B LOCATED IN: nucleus%3B EXPRESSED IN: 27 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C NF-X1-type (InterPro:IPR000967)%2C Zinc finger%2C PHD-type%2C conserved site (InterPro:IPR019786)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C PHD-finger (InterPro:IPR019787)%3B BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors%3Bzinc ion binding%3Bsequence-specific DNA binding transcription factors (TAIR:AT5G05660.1)%3B Has 6781 Blast hits to 3735 proteins in 261 species: Archae - 0%3B Bacteria - 123%3B Metazoa - 4814%3B Fungi - 547%3B Plants - 327%3B Viruses - 10%3B Other Eukaryotes - 960 (source: NCBI BLink).; Dbxref=PMID:11983057, PMID:12481097, PMID:16214899, PMID:16510518, PMID:16905136, PMID:18069941, PMID:18055584, PMID:18650403, PMID:18775970, PMID:19704430, PMID:20522174, PMID:22073231, locus:2012753; locus_type=protein_coding
AT1G10170.3	chr1:003333925	0.0	C/3333925-3337491	AT1G10170.3 CDS AT1G10170 ID=AT1G10170.3; Parent=AT1G10170; Name=AT1G10170.3; Note=NF-X-like 1; symbol=NFXL1; Alias=ATNFXL1, NF-X-like 1; full_name=NF-X-like 1; Dbxref=PMID:11983057, PMID:12481097, PMID:16214899, PMID:16510518, PMID:16905136, PMID:18069941, PMID:18055584, PMID:18650403, PMID:18775970, PMID:19704430, PMID:20522174, PMID:22073231, locus:2012753; curator_summary=Encodes AtNFXL1%2C a homologue of the putative human transcription repressor NF-X1. Functions as a negative regulator of the trichothecene phytotoxin-induced defense response.; computational_description=NF-X-like 1 (NFXL1)%3B FUNCTIONS IN: zinc ion binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: in 6 processes%3B LOCATED IN: nucleus%3B EXPRESSED IN: 27 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C NF-X1-type (InterPro:IPR000967)%2C Zinc finger%2C PHD-type%2C conserved site (InterPro:IPR019786)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C PHD-finger (InterPro:IPR019787)%3B BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors%3Bzinc ion binding%3Bsequence-specific DNA binding transcription factors (TAIR:AT5G05660.1)%3B Has 6781 Blast hits to 3735 proteins in 261 species: Archae - 0%3B Bacteria - 123%3B Metazoa - 4814%3B Fungi - 547%3B Plants - 327%3B Viruses - 10%3B Other Eukaryotes - 960 (source: NCBI BLink).; locus_type=protein_coding
AT1G10180.1	chr1:003338381	0.0	C/3338381-3338648,3338739-3338875,3339047-3339235,3339322-3339828,3339912-3340929,3341076-3341170,3341399-3341494	AT1G10180.1 CDS AT1G10180 ID=AT1G10180.1; Parent=AT1G10180; Name=AT1G10180.1; Note=LOW protein: exocyst complex component-like protein; conf_class=2; computational_description=BEST Arabidopsis thaliana protein match is: exocyst complex component 84B (TAIR:AT5G49830.1)%3B Has 132 Blast hits to 132 proteins in 25 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 7%3B Fungi - 0%3B Plants - 117%3B Viruses - 0%3B Other Eukaryotes - 8 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18492870, locus:2012768; locus_type=protein_coding
AT1TE10860	chr1:003342380	0.0	C/3342380-3342432	AT1TE10860 transposable_element AT1TE10860 ID=AT1TE10860; Name=AT1TE10860; Alias=ATREP10D
AT1TE10865	chr1:003342433	0.0	C/3342433-3343074,3343053-3343130	AT1TE10865 transposable_element AT1TE10865 ID=AT1TE10865; Name=AT1TE10865; Alias=ATREP13
AT1TE10870	chr1:003343131	0.0	C/3343131-3343466	AT1TE10870 transposable_element AT1TE10870 ID=AT1TE10870; Name=AT1TE10870; Alias=HELITRONY1D
AT1TE10875	chr1:003343469	0.0	C/3343469-3343773	AT1TE10875 transposable_element AT1TE10875 ID=AT1TE10875; Name=AT1TE10875; Alias=ATREP3
AT1G10190.1	chr1:003343765	0.0	C/3343765-3344130,3344236-3344379,3344472-3344525,3344676-3344828,3344923-3345141,3345242-3345334,3345430-3345591	AT1G10190.1 CDS AT1G10190 ID=AT1G10190.1; Parent=AT1G10190; Name=AT1G10190.1; Note=NEP-interacting protein%2C putative (DUF239); conf_class=2; computational_description=Protein of Unknown Function (DUF239)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239%2C plant (InterPro:IPR004314)%3B BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT4G15050.1)%3B Has 640 Blast hits to 606 proteins in 22 species: Archae - 0%3B Bacteria - 7%3B Metazoa - 0%3B Fungi - 4%3B Plants - 629%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2012783; locus_type=protein_coding
AT1G10200.1	chr1:003346677	0.0	C/3346677-3346883,3347021-3347110,3347198-3347241,3347341-3347437,3347629-3347763	AT1G10200.1 CDS AT1G10200 ID=AT1G10200.1; Parent=AT1G10200; Name=AT1G10200.1; Note=GATA type zinc finger transcription factor family protein; curator_summary=Encodes a member of the Arabidopsis LIM proteins: a family of actin bundlers with distinct expression patterns. WLIM1%2C WLIM2a%2C and WLIM2b are widely expressed%2C whereas PLIM2a%2C PLIM2b%2C and PLIM2c are predominantly expressed in pollen. Regulates actin cytoskeleton organization.; conf_class=2; symbol=WLIM1; Alias=AtWLIM1; full_name=WLIM1; computational_description=WLIM1%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%2C zinc ion binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C LIM-type (InterPro:IPR001781)%3B BEST Arabidopsis thaliana protein match is: GATA type zinc finger transcription factor family protein (TAIR:AT2G39900.1)%3B Has 4354 Blast hits to 2727 proteins in 153 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 3462%3B Fungi - 43%3B Plants - 506%3B Viruses - 0%3B Other Eukaryotes - 343 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15632092, PMID:15829605, PMID:16367961, PMID:17573466, PMID:20817848, PMID:24284066, PMID:24377444, locus:2012798; locus_type=protein_coding
AT1G10200.2	chr1:003346677	0.0	C/3346677-3346883,3347021-3347110,3347198-3347241,3347341-3347446	AT1G10200.2 CDS AT1G10200 ID=AT1G10200.2; Parent=AT1G10200; Name=AT1G10200.2; Note=GATA type zinc finger transcription factor family protein; symbol=WLIM1; Alias=AtWLIM1; full_name=WLIM1; curator_summary=Encodes a member of the Arabidopsis LIM proteins: a family of actin bundlers with distinct expression patterns. WLIM1%2C WLIM2a%2C and WLIM2b are widely expressed%2C whereas PLIM2a%2C PLIM2b%2C and PLIM2c are predominantly expressed in pollen. Regulates actin cytoskeleton organization.; computational_description=WLIM1%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%2C zinc ion binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C LIM-type (InterPro:IPR001781)%3B BEST Arabidopsis thaliana protein match is: GATA type zinc finger transcription factor family protein (TAIR:AT2G39900.1)%3B Has 4354 Blast hits to 2727 proteins in 153 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 3462%3B Fungi - 43%3B Plants - 506%3B Viruses - 0%3B Other Eukaryotes - 343 (source: NCBI BLink).; Dbxref=PMID:15632092, PMID:15829605, PMID:16367961, PMID:17573466, PMID:20817848, PMID:24284066, PMID:24377444, locus:2012798; locus_type=protein_coding
AT1G10210.1	chr1:003349579	0.0	W/3349579-3350001,3350087-3350776	AT1G10210.1 CDS AT1G10210 ID=AT1G10210.1; Parent=AT1G10210; Name=AT1G10210.1; Note=mitogen-activated protein kinase 1; curator_summary=Encodes ATMPK1.; conf_class=2; symbol=MPK1; Alias=ATMPK1, mitogen-activated protein kinase 1; full_name=mitogen-activated protein kinase 1; computational_description=mitogen-activated protein kinase 1 (MPK1)%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: mitogen-activated protein kinase homolog 2 (TAIR:AT1G59580.2)%3B Has 120133 Blast hits to 118709 proteins in 4414 species: Archae - 90%3B Bacteria - 12052%3B Metazoa - 45818%3B Fungi - 12226%3B Plants - 29321%3B Viruses - 480%3B Other Eukaryotes - 20146 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9878570, PMID:7888623, PMID:8130795, PMID:12383089, PMID:12119167, PMID:16146321, PMID:16537113, PMID:17360592, PMID:17369371, PMID:17433310, PMID:17933903, PMID:18441220, PMID:18650403, PMID:20339925, PMID:21477822, PMID:23702246, PMID:25720833, PMID:25680457, locus:2012808; locus_type=protein_coding
AT1G10210.2	chr1:003349579	0.0	W/3349579-3350001,3350087-3350776	AT1G10210.2 CDS AT1G10210 ID=AT1G10210.2; Parent=AT1G10210; Name=AT1G10210.2; Note=mitogen-activated protein kinase 1; curator_summary=Encodes ATMPK1.; conf_class=2; symbol=MPK1; Alias=ATMPK1, mitogen-activated protein kinase 1; full_name=mitogen-activated protein kinase 1; computational_description=mitogen-activated protein kinase 1 (MPK1)%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: mitogen-activated protein kinase homolog 2 (TAIR:AT1G59580.2)%3B Has 120133 Blast hits to 118709 proteins in 4414 species: Archae - 90%3B Bacteria - 12052%3B Metazoa - 45818%3B Fungi - 12226%3B Plants - 29321%3B Viruses - 480%3B Other Eukaryotes - 20146 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9878570, PMID:7888623, PMID:8130795, PMID:12383089, PMID:12119167, PMID:16146321, PMID:16537113, PMID:17360592, PMID:17369371, PMID:17433310, PMID:17933903, PMID:18441220, PMID:18650403, PMID:20339925, PMID:21477822, PMID:23702246, PMID:25720833, PMID:25680457, locus:2012808; locus_type=protein_coding
AT1G10210.3	chr1:003349579	0.0	W/3349579-3350001,3350087-3350776	AT1G10210.3 CDS AT1G10210 ID=AT1G10210.3; Parent=AT1G10210; Name=AT1G10210.3; Note=mitogen-activated protein kinase 1; symbol=MPK1; Alias=ATMPK1, mitogen-activated protein kinase 1; full_name=mitogen-activated protein kinase 1; Dbxref=PMID:9878570, PMID:7888623, PMID:8130795, PMID:12383089, PMID:12119167, PMID:16146321, PMID:16537113, PMID:17360592, PMID:17369371, PMID:17433310, PMID:17933903, PMID:18441220, PMID:18650403, PMID:20339925, PMID:21477822, PMID:23702246, PMID:25720833, PMID:25680457, locus:2012808; curator_summary=Encodes ATMPK1.; computational_description=mitogen-activated protein kinase 1 (MPK1)%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: mitogen-activated protein kinase homolog 2 (TAIR:AT1G59580.2)%3B Has 120133 Blast hits to 118709 proteins in 4414 species: Archae - 90%3B Bacteria - 12052%3B Metazoa - 45818%3B Fungi - 12226%3B Plants - 29321%3B Viruses - 480%3B Other Eukaryotes - 20146 (source: NCBI BLink).; locus_type=protein_coding
AT1G10220.1	chr1:003352159	0.0	W/3352159-3352422,3352456-3352815	AT1G10220.1 CDS AT1G10220 ID=AT1G10220.1; Parent=AT1G10220; Name=AT1G10220.1; Note=ZCF37; conf_class=6; computational_description=BEST Arabidopsis thaliana protein match is: ZCF37 (TAIR:AT1G59590.1)%3B Has 43 Blast hits to 43 proteins in 15 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 7%3B Fungi - 0%3B Plants - 27%3B Viruses - 0%3B Other Eukaryotes - 7 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:20736450, PMID:21815983, locus:2012818; locus_type=protein_coding
AT1G10220.2	chr1:003352159	0.0	W/3352159-3352815	AT1G10220.2 CDS AT1G10220 ID=AT1G10220.2; Parent=AT1G10220; Name=AT1G10220.2; Note=ZCF37; conf_class=1; computational_description=BEST Arabidopsis thaliana protein match is: ZCF37 (TAIR:AT1G59590.1)%3B Has 43 Blast hits to 43 proteins in 15 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 7%3B Fungi - 0%3B Plants - 27%3B Viruses - 0%3B Other Eukaryotes - 7 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:20736450, PMID:21815983, locus:2012818; locus_type=protein_coding
AT1G10225.1	chr1:003354364	0.0	W/3354364-3354690	AT1G10225.1 CDS AT1G10225 ID=AT1G10225.1; Parent=AT1G10225; Name=AT1G10225.1; Note=transmembrane protein; locus_type=protein_coding
AT1G10230.1	chr1:003355675	0.0	W/3355675-3356151	AT1G10230.1 CDS AT1G10230 ID=AT1G10230.1; Parent=AT1G10230; Name=AT1G10230.1; Note=E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein; conf_class=1; symbol=SK18; Alias=ASK18, SKP1-like 18; full_name=SKP1-like 18; computational_description=SKP1-like 18 (SK18)%3B FUNCTIONS IN: ubiquitin-protein ligase activity%2C protein binding%3B INVOLVED IN: ubiquitin-dependent protein catabolic process%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase%2C SCF complex%2C Skp subunit (InterPro:IPR016897)%2C SKP1 component%2C dimerisation (InterPro:IPR016072)%2C SKP1 component (InterPro:IPR001232)%2C BTB/POZ fold (InterPro:IPR011333)%2C SKP1 component%2C POZ (InterPro:IPR016073)%3B BEST Arabidopsis thaliana protein match is: SKP1-like 15 (TAIR:AT3G25650.1)%3B Has 1421 Blast hits to 1417 proteins in 266 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 533%3B Fungi - 174%3B Plants - 532%3B Viruses - 11%3B Other Eukaryotes - 171 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11387208, PMID:12795696, PMID:13677462, PMID:12970487, PMID:14585825, PMID:17470057, PMID:17497164, PMID:18775970, PMID:20458496, PMID:20736450, PMID:23226441, locus:2012823; locus_type=protein_coding
AT1G10240.1	chr1:003356835	0.0	C/3356835-3357455,3357651-3358094,3358294-3359271	AT1G10240.1 CDS AT1G10240 ID=AT1G10240.1; Parent=AT1G10240; Name=AT1G10240.1; Note=FAR1-related sequence 11; conf_class=2; symbol=FRS11; full_name=FAR1-related sequence 11; computational_description=FAR1-related sequence 11 (FRS11)%3B FUNCTIONS IN: zinc ion binding%3B INVOLVED IN: response to red or far red light%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: MULE transposase%2C conserved domain (InterPro:IPR018289)%2C Transcription factor%2C FAR1-related (InterPro:IPR004330)%2C Zinc finger%2C PMZ-type (InterPro:IPR006564)%2C Zinc finger%2C SWIM-type (InterPro:IPR007527)%3B BEST Arabidopsis thaliana protein match is: FAR1-related sequence 10 (TAIR:AT5G28530.1)%3B Has 1389 Blast hits to 1253 proteins in 43 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 4%3B Fungi - 83%3B Plants - 1296%3B Viruses - 0%3B Other Eukaryotes - 6 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15591448, locus:2012828; locus_type=protein_coding
AT1G10240.2	chr1:003356835	0.0	C/3356835-3357455,3357651-3358094,3358294-3359271	AT1G10240.2 CDS AT1G10240 ID=AT1G10240.2; Parent=AT1G10240; Name=AT1G10240.2; Note=FAR1-related sequence 11; symbol=FRS11; full_name=FAR1-related sequence 11; Dbxref=PMID:15591448, locus:2012828; computational_description=FAR1-related sequence 11 (FRS11)%3B FUNCTIONS IN: zinc ion binding%3B INVOLVED IN: response to red or far red light%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: MULE transposase%2C conserved domain (InterPro:IPR018289)%2C Transcription factor%2C FAR1-related (InterPro:IPR004330)%2C Zinc finger%2C PMZ-type (InterPro:IPR006564)%2C Zinc finger%2C SWIM-type (InterPro:IPR007527)%3B BEST Arabidopsis thaliana protein match is: FAR1-related sequence 10 (TAIR:AT5G28530.1)%3B Has 1389 Blast hits to 1253 proteins in 43 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 4%3B Fungi - 83%3B Plants - 1296%3B Viruses - 0%3B Other Eukaryotes - 6 (source: NCBI BLink).; locus_type=protein_coding
AT1G10250.1	chr1:003360137	0.0	C/3360137-3360232,3360325-3360462	AT1G10250.1 CDS AT1G10250 ID=AT1G10250.1; Parent=AT1G10250; Name=AT1G10250.1; Note=paired amphipathic helix Sin3-like protein; conf_class=4; computational_description=BEST Arabidopsis thaliana protein match is: SIN3-like 6 (TAIR:AT1G10450.1)%3B Has 310 Blast hits to 310 proteins in 86 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 174%3B Fungi - 23%3B Plants - 97%3B Viruses - 0%3B Other Eukaryotes - 16 (source: NCBI BLink).; conf_rating=***; Dbxref=locus:2012838; locus_type=protein_coding
AT1G10260.1	chr1:003360526	0.0	C/3360526-3361247	AT1G10260.1 CDS AT1G10260 ID=AT1G10260.1; Parent=AT1G10260; Name=AT1G10260.1; index=1; computational_description=copia-like retrotransposon family%2C has a 3.6e-19 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family); Dbxref=locus:2012853; Note=transposable_element_gene; locus_type=transposable_element_gene
AT1TE10930	chr1:003360540	0.0	C/3360540-3360625	AT1TE10930 transposable_element AT1TE10930 ID=AT1TE10930; Name=AT1TE10930; Alias=ATCOPIA78
AT1TE10935	chr1:003360626	0.0	C/3360626-3361316	AT1TE10935 transposable_element AT1TE10935 ID=AT1TE10935; Name=AT1TE10935; Alias=ATCOPIA78
AT1G04783.1	chr1:003361410	0.0	C/3361410-3362012	AT1G04783.1 lnc_RNA AT1G04783 ID=AT1G04783.1; Parent=AT1G04783; Name=AT1G04783.1; locus_type=long_noncoding_rna
AT1G10270.1	chr1:003363535	0.0	W/3363535-3366276	AT1G10270.1 CDS AT1G10270 ID=AT1G10270.1; Parent=AT1G10270; Name=AT1G10270.1; Note=glutamine-rich protein 23; conf_class=1; symbol=GRP23; full_name=glutamine-rich protein 23; computational_description=glutamine-rich protein 23 (GRP23)%3B FUNCTIONS IN: binding%3B INVOLVED IN: embryo development%2C cell division%3B LOCATED IN: nucleus%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%2C Tetratricopeptide-like helical (InterPro:IPR011990)%3B BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G49240.1)%3B Has 43483 Blast hits to 18975 proteins in 889 species: Archae - 27%3B Bacteria - 1738%3B Metazoa - 7010%3B Fungi - 2820%3B Plants - 24944%3B Viruses - 157%3B Other Eukaryotes - 6787 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15078335, PMID:16489121, PMID:18650403, PMID:21908688, PMID:24086632, locus:2012868; locus_type=protein_coding
AT1G10280.1	chr1:003366795	0.0	C/3366795-3367436,3368143-3368739	AT1G10280.1 CDS AT1G10280 ID=AT1G10280.1; Parent=AT1G10280; Name=AT1G10280.1; Note=Core-2/I-branching beta-1%2C6-N-acetylglucosaminyltransferase family protein; conf_class=2; computational_description=Core-2/I-branching beta-1%2C6-N-acetylglucosaminyltransferase family protein%3B CONTAINS InterPro DOMAIN/s: Core-2/I-Branching enzyme (InterPro:IPR021141)%3B BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1%2C6-N-acetylglucosaminyltransferase family protein (TAIR:AT3G21310.1)%3B Has 584 Blast hits to 584 proteins in 19 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 0%3B Fungi - 0%3B Plants - 556%3B Viruses - 0%3B Other Eukaryotes - 26 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:20736450, locus:2012748; locus_type=protein_coding
AT1G10290.1	chr1:003370774	0.0	W/3370774-3370914,3371198-3371248,3371345-3371465,3371595-3371687,3372032-3372093,3372264-3372381,3372528-3372864,3372970-3373117,3373444-3373545,3373626-3373745,3374013-3374096,3374181-3374308,3374412-3374496,3374614-3374752,3374978-3375054,3375125-3375181,3375464-3375608,3375696-3375835,3376175-3376288,3376402-3376469,3376553-3376725,3376879-3377120	AT1G10290.1 CDS AT1G10290 ID=AT1G10290.1; Parent=AT1G10290; Name=AT1G10290.1; Note=dynamin-like protein 6; curator_summary=involved in trafficking from the trans-Golgi Network to the central vacuole.; conf_class=2; symbol=ADL6; Alias=DRP2A, DYNAMIN-RELATED PROTEIN 2A; full_name=dynamin-like protein 6; computational_description=dynamin-like protein 6 (ADL6)%3B FUNCTIONS IN: GTPase activity%3B INVOLVED IN: Golgi to vacuole transport%3B LOCATED IN: Golgi apparatus%2C plasma membrane%2C membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Dynamin GTPase effector (InterPro:IPR003130)%2C Pleckstrin homology-type (InterPro:IPR011993)%2C Dynamin%2C GTPase region%2C conserved site (InterPro:IPR019762)%2C Dynamin%2C GTPase domain (InterPro:IPR001401)%2C GTPase effector domain%2C GED (InterPro:IPR020850)%2C Dynamin central region (InterPro:IPR000375)%2C Pleckstrin homology (InterPro:IPR001849)%3B BEST Arabidopsis thaliana protein match is: dynamin-like 3 (TAIR:AT1G59610.1)%3B Has 3284 Blast hits to 3098 proteins in 352 species: Archae - 4%3B Bacteria - 126%3B Metazoa - 1435%3B Fungi - 709%3B Plants - 704%3B Viruses - 0%3B Other Eukaryotes - 306 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11449048, PMID:14750516, PMID:15215502, PMID:15358268, PMID:15539469, PMID:17085974, PMID:18612642, PMID:18809930, PMID:20736450, PMID:20959563, PMID:21461976, PMID:22645532, PMID:25521759, PMID:25462567, locus:2012763; locus_type=protein_coding
AT1G10300.1	chr1:003378142	0.0	W/3378142-3379248,3379270-3380226	AT1G10300.1 CDS AT1G10300 ID=AT1G10300.1; Parent=AT1G10300; Name=AT1G10300.1; Note=Nucleolar GTP-binding protein; conf_class=2; Alias=Nog1-2; computational_description=Nucleolar GTP-binding protein%3B FUNCTIONS IN: GTP binding%3B EXPRESSED IN: carpel%3B EXPRESSED DURING: 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: GTP1/OBG (InterPro:IPR006073)%2C Nucleolar GTP-binding 1 (InterPro:IPR010674)%2C NOG%2C C-terminal (InterPro:IPR012973)%3B BEST Arabidopsis thaliana protein match is: Nucleolar GTP-binding protein (TAIR:AT1G50920.1)%3B Has 8833 Blast hits to 8598 proteins in 2008 species: Archae - 347%3B Bacteria - 5084%3B Metazoa - 895%3B Fungi - 393%3B Plants - 246%3B Viruses - 2%3B Other Eukaryotes - 1866 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:20736450, PMID:25566271, locus:2012778; locus_type=protein_coding
AT1G10300.3	chr1:003378142	0.0	W/3378142-3379248,3379270-3380226	AT1G10300.3 CDS AT1G10300 ID=AT1G10300.3; Parent=AT1G10300; Name=AT1G10300.3; Note=Nucleolar GTP-binding protein; Alias=Nog1-2; Dbxref=PMID:20736450, PMID:25566271, locus:2012778; computational_description=Nucleolar GTP-binding protein%3B FUNCTIONS IN: GTP binding%3B EXPRESSED IN: carpel%3B EXPRESSED DURING: 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: GTP1/OBG (InterPro:IPR006073)%2C Nucleolar GTP-binding 1 (InterPro:IPR010674)%2C NOG%2C C-terminal (InterPro:IPR012973)%3B BEST Arabidopsis thaliana protein match is: Nucleolar GTP-binding protein (TAIR:AT1G50920.1)%3B Has 8833 Blast hits to 8598 proteins in 2008 species: Archae - 347%3B Bacteria - 5084%3B Metazoa - 895%3B Fungi - 393%3B Plants - 246%3B Viruses - 2%3B Other Eukaryotes - 1866 (source: NCBI BLink).; locus_type=protein_coding
AT1G10300.2	chr1:003378229	0.0	W/3378229-3379248,3379270-3380226	AT1G10300.2 CDS AT1G10300 ID=AT1G10300.2; Parent=AT1G10300; Name=AT1G10300.2; Note=Nucleolar GTP-binding protein; Alias=Nog1-2; computational_description=Nucleolar GTP-binding protein%3B FUNCTIONS IN: GTP binding%3B EXPRESSED IN: carpel%3B EXPRESSED DURING: 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: GTP1/OBG (InterPro:IPR006073)%2C Nucleolar GTP-binding 1 (InterPro:IPR010674)%2C NOG%2C C-terminal (InterPro:IPR012973)%3B BEST Arabidopsis thaliana protein match is: Nucleolar GTP-binding protein (TAIR:AT1G50920.1)%3B Has 8833 Blast hits to 8598 proteins in 2008 species: Archae - 347%3B Bacteria - 5084%3B Metazoa - 895%3B Fungi - 393%3B Plants - 246%3B Viruses - 2%3B Other Eukaryotes - 1866 (source: NCBI BLink).; Dbxref=PMID:20736450, PMID:25566271, locus:2012778; locus_type=protein_coding
AT1TE10990	chr1:003380426	0.0	C/3380426-3380594	AT1TE10990 transposable_element AT1TE10990 ID=AT1TE10990; Name=AT1TE10990; Alias=HELITRON4
AT1TE10995	chr1:003380595	0.0	C/3380595-3381483	AT1TE10995 transposable_element AT1TE10995 ID=AT1TE10995; Name=AT1TE10995; Alias=ATREP15
AT1TE11000	chr1:003381484	0.0	W/3381484-3381621	AT1TE11000 transposable_element AT1TE11000 ID=AT1TE11000; Name=AT1TE11000; Alias=ATREP6
AT1G10310.1	chr1:003381733	0.0	C/3381733-3381802,3382025-3382197,3382683-3382876,3383282-3383351,3383653-3383874	AT1G10310.1 CDS AT1G10310 ID=AT1G10310.1; Parent=AT1G10310; Name=AT1G10310.1; Note=NAD(P)-binding Rossmann-fold superfamily protein; curator_summary=encodes a NADPH-dependent pterin aldehyde reductase that accepts pterin aldehyde as well as dihydropterin aldehyde as substrates involved in metabolism and salvage of folate and its derivatives.; conf_class=2; computational_description=NAD(P)-binding Rossmann-fold superfamily protein%3B CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase%2C conserved site (InterPro:IPR020904)%2C NAD(P)-binding domain (InterPro:IPR016040)%2C Glucose/ribitol dehydrogenase (InterPro:IPR002347)%2C Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198)%3B BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G55290.2)%3B Has 116138 Blast hits to 115933 proteins in 3618 species: Archae - 897%3B Bacteria - 77623%3B Metazoa - 6898%3B Fungi - 5998%3B Plants - 2845%3B Viruses - 2%3B Other Eukaryotes - 21875 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:17220358, PMID:18775970, PMID:20736450, locus:2012793; locus_type=protein_coding
AT1G10320.1	chr1:003384164	0.0	C/3384164-3385058,3385183-3385394,3385467-3385541,3385952-3386068,3386374-3386466,3387251-3387409,3387508-3387666,3387724-3387882,3387969-3388373	AT1G10320.1 CDS AT1G10320 ID=AT1G10320.1; Parent=AT1G10320; Name=AT1G10320.1; Note=Zinc finger C-x8-C-x5-C-x3-H type family protein; conf_class=6; computational_description=Zinc finger C-x8-C-x5-C-x3-H type family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C zinc ion binding%2C nucleic acid binding%3B LOCATED IN: nucleus%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C CCCH-type (InterPro:IPR000571)%2C RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%2C RNA recognition%2C domain 1 (InterPro:IPR003954)%2C U2 auxiliary factor small subunit (InterPro:IPR009145)%3B BEST Arabidopsis thaliana protein match is: U2 snRNP auxiliary factor small subunit%2C putative (TAIR:AT1G27650.1)%3B Has 103377 Blast hits to 43645 proteins in 2110 species: Archae - 258%3B Bacteria - 11294%3B Metazoa - 44927%3B Fungi - 9113%3B Plants - 5313%3B Viruses - 581%3B Other Eukaryotes - 31891 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:16407443, PMID:18221561, locus:2012843; locus_type=protein_coding
AT1G10320.2	chr1:003384164	0.0	C/3384164-3385058,3385183-3385394,3385467-3385541,3385952-3386068,3386374-3386466,3387251-3387409,3387508-3387639,3387724-3387882,3387969-3388373	AT1G10320.2 CDS AT1G10320 ID=AT1G10320.2; Parent=AT1G10320; Name=AT1G10320.2; Note=Zinc finger C-x8-C-x5-C-x3-H type family protein; computational_description=Zinc finger C-x8-C-x5-C-x3-H type family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C zinc ion binding%2C nucleic acid binding%3B LOCATED IN: nucleus%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C CCCH-type (InterPro:IPR000571)%2C RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%2C RNA recognition%2C domain 1 (InterPro:IPR003954)%2C U2 auxiliary factor small subunit (InterPro:IPR009145)%3B BEST Arabidopsis thaliana protein match is: U2 snRNP auxiliary factor small subunit%2C putative (TAIR:AT1G27650.1)%3B Has 103377 Blast hits to 43645 proteins in 2110 species: Archae - 258%3B Bacteria - 11294%3B Metazoa - 44927%3B Fungi - 9113%3B Plants - 5313%3B Viruses - 581%3B Other Eukaryotes - 31891 (source: NCBI BLink).; Dbxref=PMID:16407443, PMID:18221561, locus:2012843; locus_type=protein_coding
AT1TE11020	chr1:003388028	0.0	W/3388028-3388400	AT1TE11020 transposable_element AT1TE11020 ID=AT1TE11020; Name=AT1TE11020; Alias=ATENSPM6
AT1G10330.1	chr1:003388747	0.0	W/3388747-3390150	AT1G10330.1 CDS AT1G10330 ID=AT1G10330.1; Parent=AT1G10330; Name=AT1G10330.1; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; conf_class=1; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G66520.1)%3B Has 31141 Blast hits to 12595 proteins in 196 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 63%3B Fungi - 42%3B Plants - 30558%3B Viruses - 0%3B Other Eukaryotes - 478 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:20226671, PMID:20736450, locus:2012858; locus_type=protein_coding
AT1G10340.1	chr1:003390475	0.0	C/3390475-3391335,3391517-3391956,3392046-3392481	AT1G10340.1 CDS AT1G10340 ID=AT1G10340.1; Parent=AT1G10340; Name=AT1G10340.1; Note=Ankyrin repeat family protein; conf_class=2; computational_description=Ankyrin repeat family protein%3B CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683)%2C Ankyrin repeat (InterPro:IPR002110)%3B BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT2G24600.4)%3B Has 23228 Blast hits to 12811 proteins in 577 species: Archae - 31%3B Bacteria - 1612%3B Metazoa - 12827%3B Fungi - 1604%3B Plants - 2793%3B Viruses - 138%3B Other Eukaryotes - 4223 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16766691, PMID:17189325, PMID:18650403, PMID:20736450, locus:2012873; locus_type=protein_coding
AT1G10340.2	chr1:003390475	0.0	C/3390475-3391335,3391517-3391956,3392058-3392481	AT1G10340.2 CDS AT1G10340 ID=AT1G10340.2; Parent=AT1G10340; Name=AT1G10340.2; Note=Ankyrin repeat family protein; conf_class=3; computational_description=Ankyrin repeat family protein%3B CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683)%2C Ankyrin repeat (InterPro:IPR002110)%3B BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT2G24600.4)%3B Has 23228 Blast hits to 12811 proteins in 577 species: Archae - 31%3B Bacteria - 1612%3B Metazoa - 12827%3B Fungi - 1604%3B Plants - 2793%3B Viruses - 138%3B Other Eukaryotes - 4223 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16766691, PMID:17189325, PMID:18650403, PMID:20736450, locus:2012873; locus_type=protein_coding
AT1G10350.1	chr1:003393595	0.0	C/3393595-3394033,3394250-3394860	AT1G10350.1 CDS AT1G10350 ID=AT1G10350.1; Parent=AT1G10350; Name=AT1G10350.1; Note=DNAJ heat shock family protein; conf_class=2; computational_description=DNAJ heat shock family protein%3B FUNCTIONS IN: unfolded protein binding%2C heat shock protein binding%3B INVOLVED IN: protein folding%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Molecular chaperone%2C heat shock protein%2C Hsp40%2C DnaJ (InterPro:IPR015609)%2C HSP40/DnaJ peptide-binding (InterPro:IPR008971)%2C Chaperone DnaJ%2C C-terminal (InterPro:IPR002939)%2C Heat shock protein DnaJ%2C N-terminal (InterPro:IPR001623)%2C Heat shock protein DnaJ (InterPro:IPR003095)%2C Heat shock protein DnaJ%2C conserved site (InterPro:IPR018253)%3B BEST Arabidopsis thaliana protein match is: DNAJ heat shock family protein (TAIR:AT1G59725.1)%3B Has 27964 Blast hits to 27510 proteins in 3469 species: Archae - 176%3B Bacteria - 10323%3B Metazoa - 4622%3B Fungi - 2603%3B Plants - 2812%3B Viruses - 18%3B Other Eukaryotes - 7410 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2012743; locus_type=protein_coding
AT1G10360.1	chr1:003395738	0.0	C/3395738-3396100,3396486-3396806	AT1G10360.1 CDS AT1G10360 ID=AT1G10360.1; Parent=AT1G10360; Name=AT1G10360.1; Note=glutathione S-transferase TAU 18; curator_summary=Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).; conf_class=2; symbol=GSTU18; Alias=ATGSTU18, glutathione S-transferase TAU 18, GST29, GLUTATHIONE S-TRANSFERASE 29; full_name=glutathione S-transferase TAU 18; computational_description=glutathione S-transferase TAU 18 (GSTU18)%3B CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335)%2C Glutathione S-transferase%2C C-terminal (InterPro:IPR004046)%2C Glutathione S-transferase%2C C-terminal-like (InterPro:IPR010987)%2C Glutathione S-transferase/chloride channel%2C C-terminal (InterPro:IPR017933)%2C Glutathione S-transferase%2C N-terminal (InterPro:IPR004045)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B BEST Arabidopsis thaliana protein match is: Glutathione S-transferase family protein (TAIR:AT1G10370.1)%3B Has 5056 Blast hits to 5041 proteins in 1030 species: Archae - 0%3B Bacteria - 2429%3B Metazoa - 208%3B Fungi - 116%3B Plants - 1907%3B Viruses - 0%3B Other Eukaryotes - 396 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12090627, PMID:15743445, PMID:16299171, PMID:17545220, PMID:18650403, PMID:19174456, locus:2012758; locus_type=protein_coding
AT1G10370.1	chr1:003397274	0.0	C/3397274-3397636,3397953-3398273	AT1G10370.1 CDS AT1G10370 ID=AT1G10370.1; Parent=AT1G10370; Name=AT1G10370.1; Note=Glutathione S-transferase family protein; curator_summary=Encodes GSTU17 (Glutathione S-Transferase U17). Functions as a negative component of stress-mediated signal transduction pathways in drought and salt stress responses.; conf_class=2; symbol=ERD9; Alias=ATGSTU17, GLUTATHIONE S-TRANSFERASE TAU 17, GST30B, GLUTATHIONE S-TRANSFERASE 30B, GST30, GLUTATHIONE S-TRANSFERASE 30, GSTU17, GLUTATHIONE S-TRANSFERASE U17; full_name=EARLY-RESPONSIVE TO DEHYDRATION 9; computational_description=EARLY-RESPONSIVE TO DEHYDRATION 9 (ERD9)%3B FUNCTIONS IN: glutathione transferase activity%3B INVOLVED IN: response to water deprivation%2C response to karrikin%2C toxin catabolic process%3B LOCATED IN: chloroplast%2C cytoplasm%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335)%2C Glutathione S-transferase%2C C-terminal (InterPro:IPR004046)%2C Glutathione S-transferase%2C C-terminal-like (InterPro:IPR010987)%2C Glutathione S-transferase/chloride channel%2C C-terminal (InterPro:IPR017933)%2C Glutathione S-transferase%2C N-terminal (InterPro:IPR004045)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B BEST Arabidopsis thaliana protein match is: glutathione S-transferase TAU 18 (TAIR:AT1G10360.1)%3B Has 6064 Blast hits to 6029 proteins in 1096 species: Archae - 0%3B Bacteria - 2896%3B Metazoa - 397%3B Fungi - 130%3B Plants - 2065%3B Viruses - 0%3B Other Eukaryotes - 576 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:8075396, PMID:12090627, PMID:12853141, PMID:15618427, PMID:15743445, PMID:16514558, PMID:16998091, PMID:17478635, PMID:17640338, PMID:18671872, PMID:18650403, PMID:18757557, PMID:19174456, PMID:20351290, PMID:20736450, PMID:20935176, PMID:22095046, PMID:23567274, locus:2012773; locus_type=protein_coding
AT1G10380.1	chr1:003400706	0.0	W/3400706-3401196,3401481-3401845,3402049-3402110	AT1G10380.1 CDS AT1G10380 ID=AT1G10380.1; Parent=AT1G10380; Name=AT1G10380.1; Note=Putative membrane lipoprotein; conf_class=2; computational_description=Putative membrane lipoprotein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 19 plant structures%3B EXPRESSED DURING: 10 growth stages%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17350.1)%3B Has 280 Blast hits to 279 proteins in 14 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 280%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16702412, PMID:18650403, locus:2012863; locus_type=protein_coding
AT1G10380.2	chr1:003400706	0.0	W/3400706-3401196,3401481-3401901	AT1G10380.2 CDS AT1G10380 ID=AT1G10380.2; Parent=AT1G10380; Name=AT1G10380.2; Note=Putative membrane lipoprotein; computational_description=Putative membrane lipoprotein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 19 plant structures%3B EXPRESSED DURING: 10 growth stages%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17350.1)%3B Has 280 Blast hits to 279 proteins in 14 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 280%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=PMID:16702412, PMID:18650403, locus:2012863; locus_type=protein_coding
AT1G10385.1	chr1:003403224	0.0	W/3403224-3403382,3403487-3403584,3403678-3404713,3404801-3405627,3405712-3405856	AT1G10385.1 CDS AT1G10385 ID=AT1G10385.1; Parent=AT1G10385; Name=AT1G10385.1; Note=Vps51/Vps67 family (components of vesicular transport) protein; conf_class=4; computational_description=Vps51/Vps67 family (components of vesicular transport) protein%3B CONTAINS InterPro DOMAIN/s: Vps51/Vps67 (InterPro:IPR014812)%3B BEST Arabidopsis thaliana protein match is: exocyst complex component 84B (TAIR:AT5G49830.1)%3B Has 436 Blast hits to 368 proteins in 139 species: Archae - 0%3B Bacteria - 32%3B Metazoa - 153%3B Fungi - 106%3B Plants - 134%3B Viruses - 0%3B Other Eukaryotes - 11 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:18492870, locus:505006115; locus_type=protein_coding
AT1G04787.1	chr1:003406209	0.0	W/3406209-3406622	AT1G04787.1 lnc_RNA AT1G04787 ID=AT1G04787.1; Parent=AT1G04787; Name=AT1G04787.1; locus_type=long_noncoding_rna
AT1G10390.1	chr1:003407265	0.0	C/3407265-3407944,3408031-3408072,3408415-3408589,3408697-3408813,3409033-3409171,3409289-3409349,3409426-3409513,3409691-3410325,3410425-3410652,3410768-3411415,3411596-3411889,3412027-3412045	AT1G10390.1 CDS AT1G10390 ID=AT1G10390.1; Parent=AT1G10390; Name=AT1G10390.1; Note=Nucleoporin autopeptidase; conf_class=2; computational_description=Nucleoporin autopeptidase%3B FUNCTIONS IN: transporter activity%3B INVOLVED IN: transport%3B LOCATED IN: chloroplast%2C nuclear pore%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase S59%2C nucleoporin (InterPro:IPR007230)%3B BEST Arabidopsis thaliana protein match is: Nucleoporin autopeptidase (TAIR:AT1G59660.1)%3B Has 77624 Blast hits to 32376 proteins in 1819 species: Archae - 124%3B Bacteria - 21147%3B Metazoa - 21029%3B Fungi - 13994%3B Plants - 4522%3B Viruses - 746%3B Other Eukaryotes - 16062 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:15772285, PMID:16751346, PMID:16895613, PMID:18650403, PMID:21189294, locus:2012788; locus_type=protein_coding
AT1G10390.2	chr1:003407265	0.0	C/3407265-3407944,3408031-3408072,3408415-3408589,3408697-3408813,3409033-3409171,3409289-3409349,3409426-3409513,3409691-3410325,3410425-3410652,3410768-3411415,3411596-3411889,3412027-3412045	AT1G10390.2 CDS AT1G10390 ID=AT1G10390.2; Parent=AT1G10390; Name=AT1G10390.2; Note=Nucleoporin autopeptidase; conf_class=2; computational_description=Nucleoporin autopeptidase%3B FUNCTIONS IN: transporter activity%3B INVOLVED IN: transport%3B LOCATED IN: chloroplast%2C nuclear pore%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase S59%2C nucleoporin (InterPro:IPR007230)%3B BEST Arabidopsis thaliana protein match is: Nucleoporin autopeptidase (TAIR:AT1G59660.1)%3B Has 77624 Blast hits to 32376 proteins in 1819 species: Archae - 124%3B Bacteria - 21147%3B Metazoa - 21029%3B Fungi - 13994%3B Plants - 4522%3B Viruses - 746%3B Other Eukaryotes - 16062 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:15772285, PMID:16751346, PMID:16895613, PMID:18650403, PMID:21189294, locus:2012788; locus_type=protein_coding
AT1G10390.3	chr1:003407265	0.0	C/3407265-3407944,3408031-3408072,3408415-3408589,3408697-3408813,3409033-3409171,3409289-3409349,3409426-3409513,3409691-3410325,3410425-3410652,3410768-3411415,3411596-3411889,3412027-3412045	AT1G10390.3 CDS AT1G10390 ID=AT1G10390.3; Parent=AT1G10390; Name=AT1G10390.3; Note=Nucleoporin autopeptidase; Dbxref=PMID:14576160, PMID:15772285, PMID:16751346, PMID:16895613, PMID:18650403, PMID:21189294, locus:2012788; computational_description=Nucleoporin autopeptidase%3B FUNCTIONS IN: transporter activity%3B INVOLVED IN: transport%3B LOCATED IN: chloroplast%2C nuclear pore%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase S59%2C nucleoporin (InterPro:IPR007230)%3B BEST Arabidopsis thaliana protein match is: Nucleoporin autopeptidase (TAIR:AT1G59660.1)%3B Has 77624 Blast hits to 32376 proteins in 1819 species: Archae - 124%3B Bacteria - 21147%3B Metazoa - 21029%3B Fungi - 13994%3B Plants - 4522%3B Viruses - 746%3B Other Eukaryotes - 16062 (source: NCBI BLink).; locus_type=protein_coding
AT1G10395.1	chr1:003412474	0.0	W/3412474-3412532,3412550-3412742	AT1G10395.1 CDS AT1G10395 ID=AT1G10395.1; Parent=AT1G10395; Name=AT1G10395.1; Note=hypothetical protein; locus_type=protein_coding
AT1TE11100	chr1:003413099	0.0	C/3413099-3413250	AT1TE11100 transposable_element AT1TE11100 ID=AT1TE11100; Name=AT1TE11100; Alias=RP1_AT
AT1TE11105	chr1:003413481	0.0	C/3413481-3413548	AT1TE11105 transposable_element AT1TE11105 ID=AT1TE11105; Name=AT1TE11105; Alias=HELITRONY3
AT1TE11110	chr1:003413549	0.0	W/3413549-3414889	AT1TE11110 transposable_element AT1TE11110 ID=AT1TE11110; Name=AT1TE11110; Alias=ATREP3
AT1G10400.1	chr1:003414869	0.0	C/3414869-3415508,3415595-3416358	AT1G10400.1 CDS AT1G10400 ID=AT1G10400.1; Parent=AT1G10400; Name=AT1G10400.1; Note=UDP-Glycosyltransferase superfamily protein; conf_class=4; computational_description=UDP-Glycosyltransferase superfamily protein%3B FUNCTIONS IN: UDP-glycosyltransferase activity%2C transferase activity%2C transferring glycosyl groups%3B INVOLVED IN: metabolic process%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: root%3B CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213)%2C Tudor subgroup (InterPro:IPR018351)%3B BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT5G14860.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:20736450, locus:2012813; locus_type=protein_coding
AT1TE11115	chr1:003414890	0.0	C/3414890-3414911	AT1TE11115 transposable_element AT1TE11115 ID=AT1TE11115; Name=AT1TE11115; Alias=HELITRONY1B
AT1G10410.1	chr1:003416842	0.0	C/3416842-3416943,3417026-3417148,3417238-3417432,3417520-3417648,3417737-3417899,3417993-3418128,3418216-3418557,3418652-3418732,3419078-3419264	AT1G10410.1 CDS AT1G10410 ID=AT1G10410.1; Parent=AT1G10410; Name=AT1G10410.1; Note=CW14 protein (DUF1336); conf_class=2; computational_description=Protein of unknown function (DUF1336)%3B INVOLVED IN: N-terminal protein myristoylation%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1336 (InterPro:IPR009769)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1336) (TAIR:AT1G59650.1)%3B Has 292 Blast hits to 292 proteins in 32 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 6%3B Fungi - 5%3B Plants - 234%3B Viruses - 0%3B Other Eukaryotes - 47 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12172015, PMID:12169696, PMID:12535341, PMID:12912986, PMID:14576160, PMID:18650403, PMID:18805951, PMID:18775970, locus:2012848; locus_type=protein_coding
AT1G04793.1	chr1:003422720	0.0	W/3422720-3423058	AT1G04793.1 lnc_RNA AT1G04793 ID=AT1G04793.1; Parent=AT1G04793; Name=AT1G04793.1; locus_type=long_noncoding_rna
AT1G10417.4	chr1:003424588	0.0	C/3424588-3424647,3424903-3425066,3425307-3425380,3425573-3425640,3425769-3425846,3425922-3425981,3426075-3426211,3426380-3426436,3426547-3426721,3426854-3426964,3427037-3427135,3427215-3427457	AT1G10417.4 CDS AT1G10417 ID=AT1G10417.4; Parent=AT1G10417; Name=AT1G10417.4; Note=RUN/FYVE domain protein; curator_summary=Encodes protein with unknown function whose expression is repressed by inoculation with Agrobacterium tumerifaciens.; computational_description=unknown protein%3B Has 26006 Blast hits to 16906 proteins in 1326 species: Archae - 433%3B Bacteria - 3134%3B Metazoa - 12646%3B Fungi - 2033%3B Plants - 1219%3B Viruses - 58%3B Other Eukaryotes - 6483 (source: NCBI BLink).; Dbxref=PMID:16776300, locus:1009023076; locus_type=protein_coding
AT1G10417.1	chr1:003424616	0.0	C/3424616-3424641,3424899-3425066,3425307-3425380,3425573-3425640,3425769-3425846,3425922-3425981,3426075-3426211,3426380-3426436,3426547-3426721,3426854-3426964,3427037-3427135,3427215-3427457	AT1G10417.1 CDS AT1G10417 ID=AT1G10417.1; Parent=AT1G10417; Name=AT1G10417.1; Note=RUN/FYVE domain protein; curator_summary=Encodes protein with unknown function whose expression is repressed by inoculation with Agrobacterium tumerifaciens.; conf_class=6; computational_description=unknown protein%3B Has 26006 Blast hits to 16906 proteins in 1326 species: Archae - 433%3B Bacteria - 3134%3B Metazoa - 12646%3B Fungi - 2033%3B Plants - 1219%3B Viruses - 58%3B Other Eukaryotes - 6483 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:16776300, locus:1009023076; locus_type=protein_coding
AT1G10417.2	chr1:003425530	0.0	C/3425530-3425640,3425769-3425846,3425922-3425981,3426075-3426211,3426380-3426436,3426547-3426721,3426854-3426964,3427037-3427135,3427229-3427273,3427386-3427457	AT1G10417.2 CDS AT1G10417 ID=AT1G10417.2; Parent=AT1G10417; Name=AT1G10417.2; Note=RUN/FYVE domain protein; curator_summary=Encodes protein with unknown function whose expression is repressed by inoculation with Agrobacterium tumerifaciens.; computational_description=unknown protein%3B Has 26006 Blast hits to 16906 proteins in 1326 species: Archae - 433%3B Bacteria - 3134%3B Metazoa - 12646%3B Fungi - 2033%3B Plants - 1219%3B Viruses - 58%3B Other Eukaryotes - 6483 (source: NCBI BLink).; Dbxref=PMID:16776300, locus:1009023076; locus_type=protein_coding
AT1G10417.3	chr1:003425530	0.0	C/3425530-3425640,3425769-3425846,3425922-3425981,3426075-3426211,3426380-3426436,3426547-3426721,3426854-3426964,3427037-3427135,3427229-3427357	AT1G10417.3 CDS AT1G10417 ID=AT1G10417.3; Parent=AT1G10417; Name=AT1G10417.3; Note=RUN/FYVE domain protein; curator_summary=Encodes protein with unknown function whose expression is repressed by inoculation with Agrobacterium tumerifaciens.; computational_description=unknown protein%3B Has 26006 Blast hits to 16906 proteins in 1326 species: Archae - 433%3B Bacteria - 3134%3B Metazoa - 12646%3B Fungi - 2033%3B Plants - 1219%3B Viruses - 58%3B Other Eukaryotes - 6483 (source: NCBI BLink).; Dbxref=PMID:16776300, locus:1009023076; locus_type=protein_coding
AT1TE11150	chr1:003427848	0.0	W/3427848-3427917	AT1TE11150 transposable_element AT1TE11150 ID=AT1TE11150; Name=AT1TE11150; Alias=HELITRONY1A
AT1G10419.1	chr1:003428031	0.0	W/3428031-3428425	AT1G10419.1 pseudogenic_transcript AT1G10419 ID=AT1G10419.1; Parent=AT1G10419; Name=AT1G10419.1; index=1; Note=pseudogene; curator_summary=Pseudogene of AT1G10419; Dbxref=locus:5019474608, locus:5019474608; locus_type=pseudogene; computational_description=pseudogene of aminophospholipid ATPase 3
AT1G10430.1	chr1:003428705	0.0	C/3428705-3428878,3428953-3429144,3429329-3429406,3429486-3429594,3429714-3429828,3430185-3430437	AT1G10430.1 CDS AT1G10430 ID=AT1G10430.1; Parent=AT1G10430; Name=AT1G10430.1; Note=protein phosphatase 2A-2; curator_summary=Encodes one of the isoforms of the catalytic subunit of protein phosphatase 2A: AT1G59830/PP2A-1%2C AT1G10430/PP2A-2%2C At2g42500/PP2A-3%2C At3g58500/PP2A-4 [Plant Molecular Biology (1993) 21:475-485 and (1994) 26:523-528%3B Note that in more recent publications%2C there is mixed use of gene names for PP2A-3 and PP2A-4 - some refer to At2g42500 as PP2A-3 and some as PP2A-4]. It regulates the activation of ADF/cofilin%2C which%2C in turn%2C regulates actin cytoskeleton remodeling and is involved in phot2-mediated chloroplast avoidance movements.; conf_class=2; symbol=PP2A-2; full_name=protein phosphatase 2A-2; computational_description=protein phosphatase 2A-2 (PP2A-2)%3B FUNCTIONS IN: protein serine/threonine phosphatase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: nucleus%2C plasma membrane%2C cytoplasm%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843)%2C Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186)%3B BEST Arabidopsis thaliana protein match is: protein phosphatase 2A-2 (TAIR:AT1G59830.1)%3B Has 6751 Blast hits to 6569 proteins in 471 species: Archae - 80%3B Bacteria - 183%3B Metazoa - 2378%3B Fungi - 1410%3B Plants - 970%3B Viruses - 5%3B Other Eukaryotes - 1725 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10091592, PMID:10080713, PMID:9869399, PMID:9524239, PMID:7948902, PMID:8292782, PMID:8382968, PMID:12068121, PMID:15469496, PMID:16166256, PMID:17368080, PMID:22404109, PMID:22642987, PMID:25489022, locus:2194626; locus_type=protein_coding
AT1G10430.2	chr1:003428705	0.0	C/3428705-3428878,3428953-3429144,3429329-3429406,3429486-3429594,3429714-3429828,3430185-3430437	AT1G10430.2 CDS AT1G10430 ID=AT1G10430.2; Parent=AT1G10430; Name=AT1G10430.2; Note=protein phosphatase 2A-2; symbol=PP2A-2; full_name=protein phosphatase 2A-2; Dbxref=PMID:10091592, PMID:10080713, PMID:9869399, PMID:9524239, PMID:7948902, PMID:8292782, PMID:8382968, PMID:12068121, PMID:15469496, PMID:16166256, PMID:17368080, PMID:22404109, PMID:22642987, PMID:25489022, locus:2194626; curator_summary=Encodes one of the isoforms of the catalytic subunit of protein phosphatase 2A: AT1G59830/PP2A-1%2C AT1G10430/PP2A-2%2C At2g42500/PP2A-3%2C At3g58500/PP2A-4 [Plant Molecular Biology (1993) 21:475-485 and (1994) 26:523-528%3B Note that in more recent publications%2C there is mixed use of gene names for PP2A-3 and PP2A-4 - some refer to At2g42500 as PP2A-3 and some as PP2A-4]. It regulates the activation of ADF/cofilin%2C which%2C in turn%2C regulates actin cytoskeleton remodeling and is involved in phot2-mediated chloroplast avoidance movements.; computational_description=protein phosphatase 2A-2 (PP2A-2)%3B FUNCTIONS IN: protein serine/threonine phosphatase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: nucleus%2C plasma membrane%2C cytoplasm%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843)%2C Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186)%3B BEST Arabidopsis thaliana protein match is: protein phosphatase 2A-2 (TAIR:AT1G59830.1)%3B Has 6751 Blast hits to 6569 proteins in 471 species: Archae - 80%3B Bacteria - 183%3B Metazoa - 2378%3B Fungi - 1410%3B Plants - 970%3B Viruses - 5%3B Other Eukaryotes - 1725 (source: NCBI BLink).; locus_type=protein_coding
AT1G10440.1	chr1:003431185	0.0	C/3431185-3431256	AT1G10440.1 tRNA AT1G10440 ID=AT1G10440.1; Parent=AT1G10440; Note=tRNA-Pro; computational_description=tRNA-Pro (anticodon: AGG); Dbxref=PMID:8980477, PMID:23066098, PMID:8980477, locus:3691720; Name=AT1G10440.1; locus_type=pre_trna
AT1G10450.3	chr1:003432160	0.0	W/3432160-3432386,3432541-3432663,3432779-3432959,3433047-3433145,3433260-3433403,3433619-3433709,3433947-3434170,3434266-3434420,3434672-3434799,3434892-3435146,3435368-3435867,3436058-3436651,3436743-3436831,3436908-3437046,3437151-3437303,3437381-3437541,3437621-3437732,3437833-3437979	AT1G10450.3 CDS AT1G10450 ID=AT1G10450.3; Parent=AT1G10450; Name=AT1G10450.3; Note=paired amphipathic helix Sin3-like protein; symbol=SNL6; full_name=SIN3-like 6; Dbxref=PMID:14576160, PMID:15047898, PMID:19962994, locus:2194559; curator_summary=Encodes SIN3-like 6%2C a homolog of the transcriptional repressor SIN3 (AT1G24190).; computational_description=SIN3-like 6 (SNL6)%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B LOCATED IN: nucleus%3B EXPRESSED IN: cultured cell%3B CONTAINS InterPro DOMAIN/s: Histone deacetylase interacting (InterPro:IPR013194)%2C Paired amphipathic helix (InterPro:IPR003822)%3B BEST Arabidopsis thaliana protein match is: SIN3-like 5 (TAIR:AT1G59890.1)%3B Has 2418 Blast hits to 1013 proteins in 213 species: Archae - 0%3B Bacteria - 30%3B Metazoa - 894%3B Fungi - 728%3B Plants - 479%3B Viruses - 2%3B Other Eukaryotes - 285 (source: NCBI BLink).; locus_type=protein_coding
AT1G10450.1	chr1:003432313	0.0	W/3432313-3432386,3432541-3432663,3432779-3432959,3433047-3433145,3433260-3433403,3433619-3433709,3433947-3434170,3434266-3434420,3434672-3434799,3434892-3435146,3435368-3435867,3436058-3436651,3436743-3436831,3436908-3437046,3437151-3437303,3437381-3437541,3437621-3437732,3437833-3437979	AT1G10450.1 CDS AT1G10450 ID=AT1G10450.1; Parent=AT1G10450; Name=AT1G10450.1; Note=paired amphipathic helix Sin3-like protein; curator_summary=Encodes SIN3-like 6%2C a homolog of the transcriptional repressor SIN3 (AT1G24190).; conf_class=4; symbol=SNL6; full_name=SIN3-like 6; computational_description=SIN3-like 6 (SNL6)%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B LOCATED IN: nucleus%3B EXPRESSED IN: cultured cell%3B CONTAINS InterPro DOMAIN/s: Histone deacetylase interacting (InterPro:IPR013194)%2C Paired amphipathic helix (InterPro:IPR003822)%3B BEST Arabidopsis thaliana protein match is: SIN3-like 5 (TAIR:AT1G59890.1)%3B Has 2418 Blast hits to 1013 proteins in 213 species: Archae - 0%3B Bacteria - 30%3B Metazoa - 894%3B Fungi - 728%3B Plants - 479%3B Viruses - 2%3B Other Eukaryotes - 285 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:14576160, PMID:15047898, PMID:19962994, locus:2194559; locus_type=protein_coding
AT1G10450.2	chr1:003432313	0.0	W/3432313-3432386,3432541-3432663,3432779-3432959,3433047-3433145,3433260-3433403,3433619-3433709,3433947-3434170,3434266-3434420,3434672-3434799,3434892-3435146,3435368-3435867,3436058-3436651,3436743-3436831,3436908-3437046,3437151-3437303,3437381-3437541,3437621-3437732,3437833-3437979	AT1G10450.2 CDS AT1G10450 ID=AT1G10450.2; Parent=AT1G10450; Name=AT1G10450.2; Note=paired amphipathic helix Sin3-like protein; symbol=SNL6; full_name=SIN3-like 6; curator_summary=Encodes SIN3-like 6%2C a homolog of the transcriptional repressor SIN3 (AT1G24190).; computational_description=SIN3-like 6 (SNL6)%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B LOCATED IN: nucleus%3B EXPRESSED IN: cultured cell%3B CONTAINS InterPro DOMAIN/s: Histone deacetylase interacting (InterPro:IPR013194)%2C Paired amphipathic helix (InterPro:IPR003822)%3B BEST Arabidopsis thaliana protein match is: SIN3-like 5 (TAIR:AT1G59890.1)%3B Has 2418 Blast hits to 1013 proteins in 213 species: Archae - 0%3B Bacteria - 30%3B Metazoa - 894%3B Fungi - 728%3B Plants - 479%3B Viruses - 2%3B Other Eukaryotes - 285 (source: NCBI BLink).; Dbxref=PMID:14576160, PMID:15047898, PMID:19962994, locus:2194559; locus_type=protein_coding
AT1G10455.1	chr1:003438555	0.0	W/3438555-3439013	AT1G10455.1 CDS AT1G10455 ID=AT1G10455.1; Parent=AT1G10455; Name=AT1G10455.1; Note=B3 DNA-binding domain protein; conf_class=9; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51970.1)%3B Has 75 Blast hits to 73 proteins in 5 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 75%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*; Dbxref=locus:504956178; locus_type=protein_coding
AT1G10460.1	chr1:003439578	0.0	C/3439578-3440231	AT1G10460.1 CDS AT1G10460 ID=AT1G10460.1; Parent=AT1G10460; Name=AT1G10460.1; Note=germin-like protein 7; curator_summary=germin-like protein (GLP7); conf_class=1; symbol=GLP7; full_name=germin-like protein 7; computational_description=germin-like protein 7 (GLP7)%3B FUNCTIONS IN: manganese ion binding%2C nutrient reservoir activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: apoplast%3B EXPRESSED IN: inflorescence meristem%2C hypocotyl%2C root%2C flower%3B EXPRESSED DURING: petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Cupin%2C RmlC-type (InterPro:IPR011051)%2C Cupin 1 (InterPro:IPR006045)%2C Germin (InterPro:IPR001929)%2C RmlC-like jelly roll fold (InterPro:IPR014710)%2C Germin%2C manganese binding site (InterPro:IPR019780)%3B BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT3G05950.1)%3B Has 1505 Blast hits to 1501 proteins in 101 species: Archae - 0%3B Bacteria - 26%3B Metazoa - 0%3B Fungi - 42%3B Plants - 1425%3B Viruses - 0%3B Other Eukaryotes - 12 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15047898, PMID:15235117, PMID:15618427, locus:2194569; locus_type=protein_coding
AT1G10470.1	chr1:003442624	0.0	C/3442624-3442999,3443099-3443169,3443252-3443329,3443417-3443493,3443582-3443759	AT1G10470.1 CDS AT1G10470 ID=AT1G10470.1; Parent=AT1G10470; Name=AT1G10470.1; Note=response regulator 4; curator_summary=Encodes a two-component response regulator. Acts redundantly with ARR3 in the control of circadian period in a cytokinin-independent manner.; conf_class=2; symbol=ARR4; Alias=ATRR1, RESPONCE REGULATOR 1, IBC7, INDUCED BY CYTOKININ 7, MEE7, maternal effect embryo arrest 7; full_name=response regulator 4; computational_description=response regulator 4 (ARR4)%3B CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006)%2C Signal transduction response regulator%2C receiver domain (InterPro:IPR001789)%3B BEST Arabidopsis thaliana protein match is: response regulator 3 (TAIR:AT1G59940.1)%3B Has 56806 Blast hits to 56102 proteins in 2778 species: Archae - 292%3B Bacteria - 49762%3B Metazoa - 41%3B Fungi - 583%3B Plants - 1526%3B Viruses - 7%3B Other Eukaryotes - 4595 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10930573, PMID:10501033, PMID:9804162, PMID:9771897, PMID:9634588, PMID:9607306, PMID:11691995, PMID:11574878, PMID:12068096, PMID:12054542, PMID:14973166, PMID:15634699, PMID:15995350, PMID:16361787, PMID:16326927, PMID:16407152, PMID:17061125, PMID:17121545, PMID:17545225, PMID:18065689, PMID:18642946, PMID:18723577, PMID:18775970, PMID:18997423, PMID:19682286, PMID:19893362, PMID:20736450, PMID:21477822, PMID:21699589, PMID:21741261, PMID:22951399, PMID:24443518, PMID:25643735, locus:2194584; locus_type=protein_coding
AT1G10470.2	chr1:003442624	0.0	C/3442624-3442999,3443099-3443274	AT1G10470.2 CDS AT1G10470 ID=AT1G10470.2; Parent=AT1G10470; Name=AT1G10470.2; Note=response regulator 4; symbol=ARR4; Alias=ATRR1, RESPONCE REGULATOR 1, IBC7, INDUCED BY CYTOKININ 7, MEE7, maternal effect embryo arrest 7; full_name=response regulator 4; curator_summary=Encodes a two-component response regulator. Acts redundantly with ARR3 in the control of circadian period in a cytokinin-independent manner.; computational_description=response regulator 4 (ARR4)%3B CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006)%2C Signal transduction response regulator%2C receiver domain (InterPro:IPR001789)%3B BEST Arabidopsis thaliana protein match is: response regulator 3 (TAIR:AT1G59940.1)%3B Has 56806 Blast hits to 56102 proteins in 2778 species: Archae - 292%3B Bacteria - 49762%3B Metazoa - 41%3B Fungi - 583%3B Plants - 1526%3B Viruses - 7%3B Other Eukaryotes - 4595 (source: NCBI BLink).; Dbxref=PMID:10930573, PMID:10501033, PMID:9804162, PMID:9771897, PMID:9634588, PMID:9607306, PMID:11691995, PMID:11574878, PMID:12068096, PMID:12054542, PMID:14973166, PMID:15634699, PMID:15995350, PMID:16361787, PMID:16326927, PMID:16407152, PMID:17061125, PMID:17121545, PMID:17545225, PMID:18065689, PMID:18642946, PMID:18723577, PMID:18775970, PMID:18997423, PMID:19682286, PMID:19893362, PMID:20736450, PMID:21477822, PMID:21699589, PMID:21741261, PMID:22951399, PMID:24443518, PMID:25643735, locus:2194584; locus_type=protein_coding
AT1G10470.3	chr1:003442624	0.0	C/3442624-3442999,3443099-3443169,3443252-3443329,3443417-3443493,3443582-3443717	AT1G10470.3 CDS AT1G10470 ID=AT1G10470.3; Parent=AT1G10470; Name=AT1G10470.3; Note=response regulator 4; symbol=ARR4; Alias=ATRR1, RESPONCE REGULATOR 1, IBC7, INDUCED BY CYTOKININ 7, MEE7, maternal effect embryo arrest 7; full_name=response regulator 4; curator_summary=Encodes a two-component response regulator. Acts redundantly with ARR3 in the control of circadian period in a cytokinin-independent manner.; computational_description=response regulator 4 (ARR4)%3B CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006)%2C Signal transduction response regulator%2C receiver domain (InterPro:IPR001789)%3B BEST Arabidopsis thaliana protein match is: response regulator 3 (TAIR:AT1G59940.1)%3B Has 56806 Blast hits to 56102 proteins in 2778 species: Archae - 292%3B Bacteria - 49762%3B Metazoa - 41%3B Fungi - 583%3B Plants - 1526%3B Viruses - 7%3B Other Eukaryotes - 4595 (source: NCBI BLink).; Dbxref=PMID:10930573, PMID:10501033, PMID:9804162, PMID:9771897, PMID:9634588, PMID:9607306, PMID:11691995, PMID:11574878, PMID:12068096, PMID:12054542, PMID:14973166, PMID:15634699, PMID:15995350, PMID:16361787, PMID:16326927, PMID:16407152, PMID:17061125, PMID:17121545, PMID:17545225, PMID:18065689, PMID:18642946, PMID:18723577, PMID:18775970, PMID:18997423, PMID:19682286, PMID:19893362, PMID:20736450, PMID:21477822, PMID:21699589, PMID:21741261, PMID:22951399, PMID:24443518, PMID:25643735, locus:2194584; locus_type=protein_coding
AT1G10480.1	chr1:003449734	0.0	W/3449734-3450369	AT1G10480.1 CDS AT1G10480 ID=AT1G10480.1; Parent=AT1G10480; Name=AT1G10480.1; Note=zinc finger protein 5; curator_summary=Encodes a zinc finger protein containing only a single zinc finger that acts downstream of ZFP6 in regulating trichome development by integrating GA and cytokinin signaling.; conf_class=1; symbol=ZFP5; full_name=zinc finger protein 5; computational_description=zinc finger protein 5 (ZFP5)%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%2C zinc ion binding%2C nucleic acid binding%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: intracellular%2C chloroplast%3B EXPRESSED IN: inflorescence meristem%2C hypocotyl%2C root%2C flower%3B EXPRESSED DURING: petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C C2H2-type (InterPro:IPR007087)%3B BEST Arabidopsis thaliana protein match is: zinc finger protein 6 (TAIR:AT1G67030.1)%3B Has 905 Blast hits to 903 proteins in 31 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 5%3B Fungi - 0%3B Plants - 900%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:7599312, PMID:11118137, PMID:14576160, PMID:14605227, PMID:15236668, PMID:16813576, PMID:17061125, PMID:22037706, PMID:21803862, PMID:22301962, PMID:22589469, PMID:22762888, PMID:23506479, PMID:24023856, PMID:25676129, PMID:25640859, locus:2194599; locus_type=protein_coding
AT1G10490.1	chr1:003453589	0.0	W/3453589-3453693,3453782-3453873,3454113-3454284,3454366-3454488,3454568-3454741,3454854-3454964,3455044-3455177,3455263-3455356,3455555-3455653,3455738-3455874,3455997-3456094,3456583-3456706,3456801-3456888,3456969-3457068,3457148-3457200,3457424-3457600,3457684-3457721,3457789-3457882,3457960-3458139,3458233-3458347,3458444-3458513,3458643-3458790,3458988-3459116,3459247-3459372,3459526-3459591,3459686-3459925	AT1G10490.1 CDS AT1G10490 ID=AT1G10490.1; Parent=AT1G10490; Name=AT1G10490.1; Note=GNAT acetyltransferase (DUF699); conf_class=2; computational_description=CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1726 (InterPro:IPR013562)%2C Domain of unknown function DUF699%2C exodeoxyribonuclease V alpha chain (InterPro:IPR007807)%3B BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF1726) %3BPutative ATPase (DUF699) (TAIR:AT3G57940.1)%3B Has 1351 Blast hits to 1310 proteins in 616 species: Archae - 139%3B Bacteria - 698%3B Metazoa - 170%3B Fungi - 143%3B Plants - 51%3B Viruses - 0%3B Other Eukaryotes - 150 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15695462, locus:2194579; locus_type=protein_coding
AT1G10490.2	chr1:003453589	0.0	W/3453589-3453693,3453782-3453873,3454113-3454284,3454366-3454488,3454568-3454741,3454854-3454964,3455044-3455177,3455263-3455356,3455555-3455653,3455738-3455874,3455997-3456094,3456583-3456706,3456801-3456888,3456969-3457068,3457148-3457200,3457424-3457600,3457684-3457721,3457789-3457882,3457960-3458139,3458233-3458347,3458444-3458513,3458643-3458790,3458988-3459116,3459247-3459372,3459526-3459591,3459686-3459925	AT1G10490.2 CDS AT1G10490 ID=AT1G10490.2; Parent=AT1G10490; Name=AT1G10490.2; Note=GNAT acetyltransferase (DUF699); Dbxref=PMID:15695462, locus:2194579; computational_description=CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1726 (InterPro:IPR013562)%2C Domain of unknown function DUF699%2C exodeoxyribonuclease V alpha chain (InterPro:IPR007807)%3B BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF1726) %3BPutative ATPase (DUF699) (TAIR:AT3G57940.1)%3B Has 1351 Blast hits to 1310 proteins in 616 species: Archae - 139%3B Bacteria - 698%3B Metazoa - 170%3B Fungi - 143%3B Plants - 51%3B Viruses - 0%3B Other Eukaryotes - 150 (source: NCBI BLink).; locus_type=protein_coding
AT1G10500.1	chr1:003460160	0.0	C/3460160-3460302,3460690-3460908,3461160-3461340	AT1G10500.1 CDS AT1G10500 ID=AT1G10500.1; Parent=AT1G10500; Name=AT1G10500.1; Note=chloroplast-localized ISCA-like protein; curator_summary=Involved in chloroplast Fe-S cluster assembly. Located in the chloroplast stroma. Expressed preferentially in green tissues.; conf_class=2; symbol=CPISCA; Alias=ATCPISCA, chloroplast-localized ISCA-like protein; full_name=chloroplast-localized ISCA-like protein; computational_description=chloroplast-localized ISCA-like protein (CPISCA)%3B CONTAINS InterPro DOMAIN/s: FeS cluster insertion%2C C-terminal%2C conserved site (InterPro:IPR017870)%2C FeS cluster biogenesis (InterPro:IPR000361)%2C FeS cluster insertion (InterPro:IPR016092)%3B BEST Arabidopsis thaliana protein match is: Iron-sulphur cluster biosynthesis family protein (TAIR:AT5G03905.1)%3B Has 10385 Blast hits to 10384 proteins in 1842 species: Archae - 43%3B Bacteria - 5944%3B Metazoa - 237%3B Fungi - 240%3B Plants - 172%3B Viruses - 0%3B Other Eukaryotes - 3749 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:15888686, PMID:16021339, PMID:17337631, PMID:18493040, PMID:25288986, locus:2194594; locus_type=protein_coding
AT1G10510.1	chr1:003461771	0.0	W/3461771-3461818,3461902-3462175,3462395-3462607,3462743-3462801,3462903-3463040,3463238-3463312,3463420-3463503,3463614-3463675,3463781-3463850,3464037-3464112,3464210-3464340,3464458-3464517,3464609-3464683,3464773-3464877,3464977-3465072,3465168-3465248,3465340-3465441,3465522-3465590	AT1G10510.1 CDS AT1G10510 ID=AT1G10510.1; Parent=AT1G10510; Name=AT1G10510.1; Note=RNI-like superfamily protein; conf_class=2; symbol=emb2004; full_name=embryo defective 2004; computational_description=embryo defective 2004 (emb2004)%3B INVOLVED IN: embryo development ending in seed dormancy%3B LOCATED IN: mitochondrion%2C chloroplast%2C plastid%2C chloroplast envelope%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B BEST Arabidopsis thaliana protein match is: RAN GTPase activating protein 1 (TAIR:AT3G63130.2)%3B Has 21704 Blast hits to 6781 proteins in 315 species: Archae - 0%3B Bacteria - 982%3B Metazoa - 9646%3B Fungi - 490%3B Plants - 1111%3B Viruses - 0%3B Other Eukaryotes - 9475 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12766230, PMID:14576160, PMID:15266054, PMID:15773857, PMID:16618929, PMID:21227935, locus:2194604; locus_type=protein_coding
AT1G10520.1	chr1:003465964	0.0	W/3465964-3466074,3466197-3466337,3466532-3466849,3466996-3467074,3467154-3467284,3467439-3467501,3467701-3467880,3467973-3468026,3468110-3468198,3468287-3468377,3468568-3468648,3468799-3468866,3468967-3469051,3469150-3469248	AT1G10520.1 CDS AT1G10520 ID=AT1G10520.1; Parent=AT1G10520; Name=AT1G10520.1; Note=DNA polymerase lambda (POLL); curator_summary=Encodes a homolog of the mammalian DNA polymerase lambda that is involved in the repair of UV-B induced DNA damage.; conf_class=1; symbol=Pol%7Blambda%7D; Alias=AtPol%7Blambda%7D, Pol%7Blambda%7D, DNA polymerase %7Blambda%7D; full_name=DNA polymerase %7Blambda%7D; computational_description=DNA polymerase lambda (POLL)%3B FUNCTIONS IN: DNA binding%2C DNA-directed DNA polymerase activity%2C catalytic activity%2C nucleotidyltransferase activity%3B INVOLVED IN: DNA repair%2C DNA replication%3B LOCATED IN: intracellular%3B EXPRESSED IN: cultured cell%3B CONTAINS InterPro DOMAIN/s: Nucleotidyl transferase domain (InterPro:IPR002934)%2C DNA-directed DNA polymerase%2C family X%2C beta-like (InterPro:IPR002008)%2C DNA-directed DNA polymerase%2C family X%2C beta-like%2C N-terminal (InterPro:IPR010996)%2C DNA polymerase lambda%2C fingers domain (InterPro:IPR018944)%2C DNA polymerase family X%2C binding site (InterPro:IPR019843)%2C DNA-directed DNA polymerase X (InterPro:IPR002054)%2C BRCT (InterPro:IPR001357)%2C DNA polymerase X (InterPro:IPR022312)%3B Has 1887 Blast hits to 1879 proteins in 557 species: Archae - 50%3B Bacteria - 688%3B Metazoa - 533%3B Fungi - 209%3B Plants - 50%3B Viruses - 7%3B Other Eukaryotes - 350 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11948185, PMID:21227935, PMID:21889425, PMID:23660835, locus:2194610; locus_type=protein_coding
AT1G10520.2	chr1:003465964	0.0	W/3465964-3466074,3466197-3466337,3466532-3466849,3466996-3467074,3467154-3467284,3467439-3467501,3467701-3467880,3467973-3468026,3468110-3468198,3468287-3468377,3468568-3468648,3468799-3468924	AT1G10520.2 CDS AT1G10520 ID=AT1G10520.2; Parent=AT1G10520; Name=AT1G10520.2; Note=DNA polymerase lambda (POLL); symbol=Pol%7Blambda%7D; Alias=AtPol%7Blambda%7D, Pol%7Blambda%7D, DNA polymerase %7Blambda%7D; full_name=DNA polymerase %7Blambda%7D; curator_summary=Encodes a homolog of the mammalian DNA polymerase lambda that is involved in the repair of UV-B induced DNA damage.; computational_description=DNA polymerase lambda (POLL)%3B FUNCTIONS IN: DNA binding%2C DNA-directed DNA polymerase activity%2C catalytic activity%2C nucleotidyltransferase activity%3B INVOLVED IN: DNA repair%2C DNA replication%3B LOCATED IN: intracellular%3B EXPRESSED IN: cultured cell%3B CONTAINS InterPro DOMAIN/s: Nucleotidyl transferase domain (InterPro:IPR002934)%2C DNA-directed DNA polymerase%2C family X%2C beta-like (InterPro:IPR002008)%2C DNA-directed DNA polymerase%2C family X%2C beta-like%2C N-terminal (InterPro:IPR010996)%2C DNA polymerase lambda%2C fingers domain (InterPro:IPR018944)%2C DNA polymerase family X%2C binding site (InterPro:IPR019843)%2C DNA-directed DNA polymerase X (InterPro:IPR002054)%2C BRCT (InterPro:IPR001357)%2C DNA polymerase X (InterPro:IPR022312)%3B Has 1887 Blast hits to 1879 proteins in 557 species: Archae - 50%3B Bacteria - 688%3B Metazoa - 533%3B Fungi - 209%3B Plants - 50%3B Viruses - 7%3B Other Eukaryotes - 350 (source: NCBI BLink).; Dbxref=PMID:11948185, PMID:21227935, PMID:21889425, PMID:23660835, locus:2194610; locus_type=protein_coding
AT1G10522.1	chr1:003470009	0.0	W/3470009-3470263,3470340-3470435,3471103-3471291	AT1G10522.1 CDS AT1G10522 ID=AT1G10522.1; Parent=AT1G10522; Name=AT1G10522.1; Note=Serine/Threonine-kinase; curator_summary=Encodes PRIN2 (plastid redox insensitive 2). PRIN2 mutants are impaired in PEP (plastid-encoded RNA polymerase) activity and high light-dependent plastid redox signalling to the nucleus.; conf_class=2; symbol=PRIN2; full_name=PLASTID REDOX INSENSITIVE 2; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B Has 24 Blast hits to 24 proteins in 8 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 24%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:17122067, PMID:18650403, PMID:22211401, PMID:23640124, PMID:25161659, locus:505006116; locus_type=protein_coding
AT1G10522.2	chr1:003470009	0.0	W/3470009-3470263,3470340-3470435,3471103-3471291	AT1G10522.2 CDS AT1G10522 ID=AT1G10522.2; Parent=AT1G10522; Name=AT1G10522.2; Note=Serine/Threonine-kinase; curator_summary=Encodes PRIN2 (plastid redox insensitive 2). PRIN2 mutants are impaired in PEP (plastid-encoded RNA polymerase) activity and high light-dependent plastid redox signalling to the nucleus.; conf_class=4; symbol=PRIN2; full_name=PLASTID REDOX INSENSITIVE 2; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B Has 24 Blast hits to 24 proteins in 8 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 24%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:14576160, PMID:17122067, PMID:18650403, PMID:22211401, PMID:23640124, PMID:25161659, locus:505006116; locus_type=protein_coding
AT1G04797.1	chr1:003470451	0.0	C/3470451-3470918	AT1G04797.1 antisense_lncRNA AT1G04797 ID=AT1G04797.1; Parent=AT1G04797; Name=AT1G04797.1; description=Natural antisense transcript overlaps with AT1G10522; Note=Natural antisense transcript overlaps with AT1G10522; locus_type=antisense_long_noncoding_rna
AT1G10530.1	chr1:003471805	0.0	C/3471805-3471912,3472047-3472147,3472235-3472526	AT1G10530.1 CDS AT1G10530 ID=AT1G10530.1; Parent=AT1G10530; Name=AT1G10530.1; Note=D-ribose-binding periplasmic protein; conf_class=1; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: N-terminal protein myristoylation%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G60010.1)%3B Has 143 Blast hits to 143 proteins in 14 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 143%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12912986, locus:2194616; locus_type=protein_coding
AT1G04803.1	chr1:003472127	0.0	W/3472127-3472558	AT1G04803.1 antisense_lncRNA AT1G04803 ID=AT1G04803.1; Parent=AT1G04803; Name=AT1G04803.1; description=Natural antisense transcript overlaps with AT1G10530; Note=Natural antisense transcript overlaps with AT1G10530; locus_type=antisense_long_noncoding_rna
AT1G10538.1	chr1:003474515	0.0	W/3474515-3474765	AT1G10538.1 pseudogenic_transcript AT1G10538 ID=AT1G10538.1; Parent=AT1G10538; Name=AT1G10538.1; index=1; Note=pseudogene; curator_summary=pseudogene of CPL4 (phosphoprotein phosphatase); Dbxref=locus:4515102512, locus:4515102512; locus_type=pseudogene; computational_description=pseudogene of C-terminal domain phosphatase-like 4
AT1G10540.1	chr1:003475024	0.0	C/3475024-3475242,3475318-3475478,3475578-3475655,3475737-3475828,3475941-3475999,3476081-3476167,3476258-3476357,3476424-3476614,3476692-3476751,3476821-3476896,3476987-3477087,3477188-3477364,3477447-3477544,3477636-3477756	AT1G10540.1 CDS AT1G10540 ID=AT1G10540.1; Parent=AT1G10540; Name=AT1G10540.1; Note=nucleobase-ascorbate transporter 8; conf_class=3; symbol=NAT8; Alias=ATNAT8; full_name=nucleobase-ascorbate transporter 8; computational_description=nucleobase-ascorbate transporter 8 (NAT8)%3B FUNCTIONS IN: transmembrane transporter activity%3B INVOLVED IN: transport%2C transmembrane transport%3B LOCATED IN: membrane%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Xanthine/uracil/vitamin C permease (InterPro:IPR006043)%3B BEST Arabidopsis thaliana protein match is: nucleobase-ascorbate transporter 7 (TAIR:AT1G60030.1)%3B Has 9247 Blast hits to 9232 proteins in 1900 species: Archae - 67%3B Bacteria - 7567%3B Metazoa - 351%3B Fungi - 128%3B Plants - 453%3B Viruses - 1%3B Other Eukaryotes - 680 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12169696, PMID:14576160, PMID:16361528, PMID:18650403, PMID:20736450, locus:2194631; locus_type=protein_coding
AT1G10540.2	chr1:003475714	0.0	C/3475714-3475828,3475941-3475999,3476081-3476167,3476258-3476357,3476424-3476614,3476692-3476751,3476821-3476896,3476987-3477087,3477188-3477364,3477447-3477544,3477636-3477756	AT1G10540.2 CDS AT1G10540 ID=AT1G10540.2; Parent=AT1G10540; Name=AT1G10540.2; Note=nucleobase-ascorbate transporter 8; symbol=NAT8; Alias=ATNAT8; full_name=nucleobase-ascorbate transporter 8; computational_description=nucleobase-ascorbate transporter 8 (NAT8)%3B FUNCTIONS IN: transmembrane transporter activity%3B INVOLVED IN: transport%2C transmembrane transport%3B LOCATED IN: membrane%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Xanthine/uracil/vitamin C permease (InterPro:IPR006043)%3B BEST Arabidopsis thaliana protein match is: nucleobase-ascorbate transporter 7 (TAIR:AT1G60030.1)%3B Has 9247 Blast hits to 9232 proteins in 1900 species: Archae - 67%3B Bacteria - 7567%3B Metazoa - 351%3B Fungi - 128%3B Plants - 453%3B Viruses - 1%3B Other Eukaryotes - 680 (source: NCBI BLink).; Dbxref=PMID:12169696, PMID:14576160, PMID:16361528, PMID:18650403, PMID:20736450, locus:2194631; locus_type=protein_coding
AT1G10550.1	chr1:003479257	0.0	C/3479257-3479665,3480157-3480365,3480490-3480590,3480744-3480957	AT1G10550.1 CDS AT1G10550 ID=AT1G10550.1; Parent=AT1G10550; Name=AT1G10550.1; Note=xyloglucan:xyloglucosyl transferase 33; curator_summary=Encodes a membrane-localized protein that is predicted to function during cell wall modification.Overexpression of XTH33 results in abnormal cell morphology. It's expression is under epigenetic control by ATX1.; conf_class=2; symbol=XTH33; Alias=XET, XYLOGLUCAN:XYLOGLUCOSYL TRANSFERASE 33; full_name=xyloglucan:xyloglucosyl transferase 33; computational_description=xyloglucan:xyloglucosyl transferase 33 (XTH33)%3B FUNCTIONS IN: hydrolase activity%2C acting on glycosyl bonds%2C hydrolase activity%2C hydrolyzing O-glycosyl compounds%2C xyloglucan:xyloglucosyl transferase activity%3B INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth%3B LOCATED IN: integral to plasma membrane%3B EXPRESSED IN: 14 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455)%2C Xyloglucan endo-transglycosylase%2C C-terminal (InterPro:IPR010713)%2C Concanavalin A-like lectin/glucanase%2C subgroup (InterPro:IPR013320)%2C Concanavalin A-like lectin/glucanase (InterPro:IPR008985)%2C Glycoside hydrolase%2C family 16 (InterPro:IPR000757)%3B BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 28 (TAIR:AT1G14720.1)%3B Has 2022 Blast hits to 2008 proteins in 287 species: Archae - 0%3B Bacteria - 257%3B Metazoa - 0%3B Fungi - 351%3B Plants - 1343%3B Viruses - 0%3B Other Eukaryotes - 71 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14966217, PMID:16157865, PMID:17238910, PMID:19154201, PMID:21285327, PMID:22253603, PMID:23104861, PMID:24363334, locus:2194554; locus_type=protein_coding
AT1TE11330	chr1:003481709	0.0	C/3481709-3482018	AT1TE11330 transposable_element AT1TE11330 ID=AT1TE11330; Name=AT1TE11330; Alias=HELITRONY1D
AT1G10560.1	chr1:003484613	0.0	W/3484613-3486706	AT1G10560.1 CDS AT1G10560 ID=AT1G10560.1; Parent=AT1G10560; Name=AT1G10560.1; Note=plant U-box 18; curator_summary=Encodes a protein containing a UND%2C a U-box%2C and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays.; conf_class=1; symbol=PUB18; Alias=ATPUB18, ARABIDOPSIS THALIANA PLANT U-BOX 18; full_name=plant U-box 18; computational_description=plant U-box 18 (PUB18)%3B FUNCTIONS IN: ubiquitin-protein ligase activity%3B INVOLVED IN: protein ubiquitination%3B LOCATED IN: ubiquitin ligase complex%3B EXPRESSED IN: 9 plant structures%3B EXPRESSED DURING: 4 anthesis%2C LP.10 ten leaves visible%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C U box domain (InterPro:IPR003613)%2C Armadillo-like helical (InterPro:IPR011989)%2C Armadillo (InterPro:IPR000225)%2C Armadillo-type fold (InterPro:IPR016024)%3B BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G60190.1)%3B Has 3089 Blast hits to 2773 proteins in 228 species: Archae - 0%3B Bacteria - 22%3B Metazoa - 252%3B Fungi - 338%3B Plants - 2172%3B Viruses - 3%3B Other Eukaryotes - 302 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12432076, PMID:12946625, PMID:14657406, PMID:20736450, PMID:21815976, PMID:22829319, locus:2194564; locus_type=protein_coding
AT1G10570.1	chr1:003487639	0.0	W/3487639-3487974,3488329-3488377,3488457-3488569,3488644-3488945,3489075-3489123,3489203-3489288,3489377-3489406,3489485-3489589,3489674-3489776,3490055-3490152,3490368-3490490,3490610-3490721,3490807-3490914,3491001-3491102	AT1G10570.1 CDS AT1G10570 ID=AT1G10570.1; Parent=AT1G10570; Name=AT1G10570.1; Note=Cysteine proteinases superfamily protein; curator_summary=Encodes a deSUMOylating enzyme. In vitro it has both peptidase activity and isopeptidase activity: it can cleave the C-terminal residues from SUMO to activate it for attachment to a target protein and it can also act on the isopeptide bond between SUMO and another protein. sYFP:OTS2 protein accumulates in nuclei in a punctate pattern. Double mutant analysis with ULP1D/OTS1 indicates that these genes are involved in salt stress responses and flowering time regulation.; conf_class=2; symbol=OTS2; Alias=ULP1C, UB-LIKE PROTEASE 1C; full_name=OVERLY TOLERANT TO SALT 2; computational_description=OVERLY TOLERANT TO SALT 2 (OTS2)%3B CONTAINS InterPro DOMAIN/s: Peptidase C48%2C SUMO/Sentrin/Ubl1 (InterPro:IPR003653)%3B BEST Arabidopsis thaliana protein match is: UB-like protease 1D (TAIR:AT1G60220.1)%3B Has 1265 Blast hits to 1250 proteins in 204 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 616%3B Fungi - 251%3B Plants - 239%3B Viruses - 3%3B Other Eukaryotes - 156 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12482876, PMID:12671079, PMID:14507998, PMID:16581939, PMID:17470057, PMID:18849491, PMID:16740136, PMID:20226671, locus:2194574; locus_type=protein_coding
AT1G10570.2	chr1:003487639	0.0	W/3487639-3487974,3488332-3488377,3488457-3488569,3488644-3488945,3489075-3489123,3489203-3489288,3489377-3489406,3489485-3489589,3489674-3489776,3490055-3490152,3490368-3490490,3490610-3490721,3490807-3490914,3491001-3491102	AT1G10570.2 CDS AT1G10570 ID=AT1G10570.2; Parent=AT1G10570; Name=AT1G10570.2; Note=Cysteine proteinases superfamily protein; curator_summary=Encodes a deSUMOylating enzyme. In vitro it has both peptidase activity and isopeptidase activity: it can cleave the C-terminal residues from SUMO to activate it for attachment to a target protein and it can also act on the isopeptide bond between SUMO and another protein. sYFP:OTS2 protein accumulates in nuclei in a punctate pattern. Double mutant analysis with ULP1D/OTS1 indicates that these genes are involved in salt stress responses and flowering time regulation.; conf_class=2; symbol=OTS2; Alias=ULP1C, UB-LIKE PROTEASE 1C; full_name=OVERLY TOLERANT TO SALT 2; computational_description=OVERLY TOLERANT TO SALT 2 (OTS2)%3B CONTAINS InterPro DOMAIN/s: Peptidase C48%2C SUMO/Sentrin/Ubl1 (InterPro:IPR003653)%3B BEST Arabidopsis thaliana protein match is: UB-like protease 1D (TAIR:AT1G60220.1)%3B Has 1265 Blast hits to 1250 proteins in 204 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 616%3B Fungi - 251%3B Plants - 239%3B Viruses - 3%3B Other Eukaryotes - 156 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12482876, PMID:12671079, PMID:14507998, PMID:16581939, PMID:17470057, PMID:18849491, PMID:16740136, PMID:20226671, locus:2194574; locus_type=protein_coding
AT1G10570.3	chr1:003488465	0.0	W/3488465-3488569,3488644-3488945,3489075-3489123,3489203-3489288,3489377-3489406,3489485-3489589,3489674-3489776,3490055-3490152,3490368-3490490,3490610-3490721,3490807-3490914,3491001-3491102	AT1G10570.3 CDS AT1G10570 ID=AT1G10570.3; Parent=AT1G10570; Name=AT1G10570.3; Note=Cysteine proteinases superfamily protein; symbol=OTS2; Alias=ULP1C, UB-LIKE PROTEASE 1C; full_name=OVERLY TOLERANT TO SALT 2; curator_summary=Encodes a deSUMOylating enzyme. In vitro it has both peptidase activity and isopeptidase activity: it can cleave the C-terminal residues from SUMO to activate it for attachment to a target protein and it can also act on the isopeptide bond between SUMO and another protein. sYFP:OTS2 protein accumulates in nuclei in a punctate pattern. Double mutant analysis with ULP1D/OTS1 indicates that these genes are involved in salt stress responses and flowering time regulation.; computational_description=OVERLY TOLERANT TO SALT 2 (OTS2)%3B CONTAINS InterPro DOMAIN/s: Peptidase C48%2C SUMO/Sentrin/Ubl1 (InterPro:IPR003653)%3B BEST Arabidopsis thaliana protein match is: UB-like protease 1D (TAIR:AT1G60220.1)%3B Has 1265 Blast hits to 1250 proteins in 204 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 616%3B Fungi - 251%3B Plants - 239%3B Viruses - 3%3B Other Eukaryotes - 156 (source: NCBI BLink).; Dbxref=PMID:12482876, PMID:12671079, PMID:14507998, PMID:16581939, PMID:17470057, PMID:18849491, PMID:16740136, PMID:20226671, locus:2194574; locus_type=protein_coding
AT1G10580.1	chr1:003491560	0.0	C/3491560-3491566,3491951-3493665	AT1G10580.1 CDS AT1G10580 ID=AT1G10580.1; Parent=AT1G10580; Name=AT1G10580.1; Note=Transducin/WD40 repeat-like superfamily protein; conf_class=2; computational_description=Transducin/WD40 repeat-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782)%2C WD40 repeat%2C conserved site (InterPro:IPR019775)%2C WD40 repeat (InterPro:IPR001680)%2C G-protein beta WD-40 repeat%2C region (InterPro:IPR020472)%2C WD40 repeat-like-containing domain (InterPro:IPR011046)%2C WD40-repeat-containing domain (InterPro:IPR017986)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C WD40 repeat%2C subgroup (InterPro:IPR019781)%3B BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G54520.1)%3B Has 62674 Blast hits to 30927 proteins in 942 species: Archae - 75%3B Bacteria - 8018%3B Metazoa - 23835%3B Fungi - 13551%3B Plants - 7464%3B Viruses - 27%3B Other Eukaryotes - 9704 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15452276, PMID:17873090, PMID:18552200, PMID:18775970, locus:2194589; locus_type=protein_coding
AT1G10585.1	chr1:003494115	0.0	C/3494115-3494204,3494296-3494613,3494967-3495104	AT1G10585.1 CDS AT1G10585 ID=AT1G10585.1; Parent=AT1G10585; Name=AT1G10585.1; Note=basic helix-loop-helix (bHLH) DNA-binding superfamily protein; conf_class=2; computational_description=basic helix-loop-helix (bHLH) DNA-binding superfamily protein%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 7 plant structures%3B EXPRESSED DURING: LP.06 six leaves visible%2C 4 anthesis%2C LP.10 ten leaves visible%2C petal differentiation and expansion stage%2C LP.08 eight leaves visible%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G10586.1)%3B Has 97 Blast hits to 96 proteins in 11 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 97%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:15356332, PMID:15824099, PMID:16183842, PMID:17233795, PMID:18783601, PMID:21443605, PMID:24377444, locus:505006117; locus_type=protein_coding
AT1G10585.2	chr1:003494115	0.0	C/3494115-3494204,3494296-3494655	AT1G10585.2 CDS AT1G10585 ID=AT1G10585.2; Parent=AT1G10585; Name=AT1G10585.2; Note=basic helix-loop-helix (bHLH) DNA-binding superfamily protein; computational_description=basic helix-loop-helix (bHLH) DNA-binding superfamily protein%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 7 plant structures%3B EXPRESSED DURING: LP.06 six leaves visible%2C 4 anthesis%2C LP.10 ten leaves visible%2C petal differentiation and expansion stage%2C LP.08 eight leaves visible%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G10586.1)%3B Has 97 Blast hits to 96 proteins in 11 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 97%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=PMID:11118137, PMID:15356332, PMID:15824099, PMID:16183842, PMID:17233795, PMID:18783601, PMID:21443605, PMID:24377444, locus:505006117; locus_type=protein_coding
AT1G10586.1	chr1:003497131	0.0	C/3497131-3497199,3497338-3497655,3499259-3499396	AT1G10586.1 CDS AT1G10586 ID=AT1G10586.1; Parent=AT1G10586; Name=AT1G10586.1; Note=basic helix-loop-helix (bHLH) DNA-binding superfamily protein; conf_class=3; computational_description=basic helix-loop-helix (bHLH) DNA-binding superfamily protein%3B FUNCTIONS IN: transcription regulator activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: nucleus%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G10585.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:4515102513; locus_type=protein_coding
AT1G10586.2	chr1:003497131	0.0	C/3497131-3497199,3497338-3497616	AT1G10586.2 CDS AT1G10586 ID=AT1G10586.2; Parent=AT1G10586; Name=AT1G10586.2; Note=basic helix-loop-helix (bHLH) DNA-binding superfamily protein; conf_class=3; computational_description=basic helix-loop-helix (bHLH) DNA-binding superfamily protein%3B FUNCTIONS IN: transcription regulator activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: nucleus%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G10585.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:4515102513; locus_type=protein_coding
AT1TE11380	chr1:003497680	0.0	C/3497680-3498873	AT1TE11380 transposable_element AT1TE11380 ID=AT1TE11380; Name=AT1TE11380; Alias=HELITRONY1E
AT1TE11385	chr1:003498874	0.0	C/3498874-3498959	AT1TE11385 transposable_element AT1TE11385 ID=AT1TE11385; Name=AT1TE11385; Alias=HELITRONY1E
AT1TE11390	chr1:003498969	0.0	C/3498969-3498994	AT1TE11390 transposable_element AT1TE11390 ID=AT1TE11390; Name=AT1TE11390; Alias=ATREP4
AT1G10588.1	chr1:003501276	0.0	W/3501276-3501360,3501468-3501655	AT1G10588.1 CDS AT1G10588 ID=AT1G10588.1; Parent=AT1G10588; Name=AT1G10588.1; Note=Gibberellin-regulated family protein; curator_summary=Encodes a Gibberellin-regulated GASA/GAST/Snakin family protein; conf_class=1; computational_description=Gibberellin-regulated family protein%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: Gibberellin regulated protein (InterPro:IPR003854)%3B BEST Arabidopsis thaliana protein match is: Gibberellin-regulated family protein (TAIR:AT2G39540.1)%3B Has 477 Blast hits to 477 proteins in 44 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 477%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:4010713424; locus_type=protein_coding
AT1G10588.2	chr1:003501276	0.0	W/3501276-3501360,3501471-3501655	AT1G10588.2 CDS AT1G10588 ID=AT1G10588.2; Parent=AT1G10588; Name=AT1G10588.2; Note=Gibberellin-regulated family protein; curator_summary=Encodes a Gibberellin-regulated GASA/GAST/Snakin family protein; conf_class=1; computational_description=Gibberellin-regulated family protein%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: Gibberellin regulated protein (InterPro:IPR003854)%3B BEST Arabidopsis thaliana protein match is: Gibberellin-regulated family protein (TAIR:AT2G39540.1)%3B Has 477 Blast hits to 477 proteins in 44 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 477%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:4010713424; locus_type=protein_coding
AT1G10590.1	chr1:003502324	0.0	C/3502324-3502514,3502763-3502991	AT1G10590.1 CDS AT1G10590 ID=AT1G10590.1; Parent=AT1G10590; Name=AT1G10590.1; Note=Nucleic acid-binding%2C OB-fold-like protein; conf_class=2; computational_description=Nucleic acid-binding%2C OB-fold-like protein%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Nucleic acid-binding%2C OB-fold-like (InterPro:IPR016027)%2C Nucleic acid-binding%2C OB-fold (InterPro:IPR012340)%3B BEST Arabidopsis thaliana protein match is: Nucleic acid-binding%2C OB-fold-like protein (TAIR:AT1G23750.1)%3B Has 250 Blast hits to 250 proteins in 60 species: Archae - 55%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 171%3B Viruses - 0%3B Other Eukaryotes - 24 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14973164, PMID:18650403, PMID:18775970, locus:2019918; locus_type=protein_coding
AT1G10590.2	chr1:003502324	0.0	C/3502324-3502514,3502763-3502991	AT1G10590.2 CDS AT1G10590 ID=AT1G10590.2; Parent=AT1G10590; Name=AT1G10590.2; Note=Nucleic acid-binding%2C OB-fold-like protein; conf_class=2; computational_description=Nucleic acid-binding%2C OB-fold-like protein%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Nucleic acid-binding%2C OB-fold-like (InterPro:IPR016027)%2C Nucleic acid-binding%2C OB-fold (InterPro:IPR012340)%3B BEST Arabidopsis thaliana protein match is: Nucleic acid-binding%2C OB-fold-like protein (TAIR:AT1G23750.1)%3B Has 250 Blast hits to 250 proteins in 60 species: Archae - 55%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 171%3B Viruses - 0%3B Other Eukaryotes - 24 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14973164, PMID:18650403, PMID:18775970, locus:2019918; locus_type=protein_coding
AT1G10590.3	chr1:003502324	0.0	C/3502324-3502514,3502763-3503033	AT1G10590.3 CDS AT1G10590 ID=AT1G10590.3; Parent=AT1G10590; Name=AT1G10590.3; Note=Nucleic acid-binding%2C OB-fold-like protein; conf_class=2; computational_description=Nucleic acid-binding%2C OB-fold-like protein%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Nucleic acid-binding%2C OB-fold-like (InterPro:IPR016027)%2C Nucleic acid-binding%2C OB-fold (InterPro:IPR012340)%3B BEST Arabidopsis thaliana protein match is: Nucleic acid-binding%2C OB-fold-like protein (TAIR:AT1G23750.1)%3B Has 250 Blast hits to 250 proteins in 60 species: Archae - 55%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 171%3B Viruses - 0%3B Other Eukaryotes - 24 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14973164, PMID:18650403, PMID:18775970, locus:2019918; locus_type=protein_coding
AT1G10600.1	chr1:003503765	0.0	W/3503765-3503917,3504024-3504113,3504426-3504488,3504569-3504643,3504737-3504799,3504882-3504934,3505016-3505190	AT1G10600.1 CDS AT1G10600 ID=AT1G10600.1; Parent=AT1G10600; Name=AT1G10600.1; Note=associated molecule with the SH3 domain of STAM 2; conf_class=2; symbol=AMSH2; full_name=associated molecule with the SH3 domain of STAM 2; computational_description=associated molecule with the SH3 domain of STAM 2 (AMSH2)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: ubiquitin-dependent protein catabolic process%3B LOCATED IN: chloroplast%3B EXPRESSED IN: cultured cell%3B CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555)%3B BEST Arabidopsis thaliana protein match is: associated molecule with the SH3 domain of STAM 3 (TAIR:AT4G16144.1)%3B Has 1093 Blast hits to 1091 proteins in 231 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 401%3B Fungi - 313%3B Plants - 274%3B Viruses - 0%3B Other Eukaryotes - 105 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:16934950, PMID:20543027, PMID:23800962, locus:2019903; locus_type=protein_coding
AT1G10600.3	chr1:003503765	0.0	W/3503765-3503917,3504024-3504113,3504426-3504488,3504569-3504643,3504737-3504799,3504882-3504934,3505019-3505190	AT1G10600.3 CDS AT1G10600 ID=AT1G10600.3; Parent=AT1G10600; Name=AT1G10600.3; Note=associated molecule with the SH3 domain of STAM 2; conf_class=3; symbol=AMSH2; full_name=associated molecule with the SH3 domain of STAM 2; computational_description=associated molecule with the SH3 domain of STAM 2 (AMSH2)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: ubiquitin-dependent protein catabolic process%3B LOCATED IN: chloroplast%3B EXPRESSED IN: cultured cell%3B CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555)%3B BEST Arabidopsis thaliana protein match is: associated molecule with the SH3 domain of STAM 3 (TAIR:AT4G16144.1)%3B Has 1093 Blast hits to 1091 proteins in 231 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 401%3B Fungi - 313%3B Plants - 274%3B Viruses - 0%3B Other Eukaryotes - 105 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:16934950, PMID:20543027, PMID:23800962, locus:2019903; locus_type=protein_coding
AT1G10600.4	chr1:003503765	0.0	W/3503765-3503917,3504024-3504113,3504426-3504488,3504569-3504643,3504737-3504799,3504882-3504934,3505016-3505190	AT1G10600.4 CDS AT1G10600 ID=AT1G10600.4; Parent=AT1G10600; Name=AT1G10600.4; Note=associated molecule with the SH3 domain of STAM 2; symbol=AMSH2; full_name=associated molecule with the SH3 domain of STAM 2; Dbxref=PMID:14576160, PMID:16934950, PMID:20543027, PMID:23800962, locus:2019903; computational_description=associated molecule with the SH3 domain of STAM 2 (AMSH2)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: ubiquitin-dependent protein catabolic process%3B LOCATED IN: chloroplast%3B EXPRESSED IN: cultured cell%3B CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555)%3B BEST Arabidopsis thaliana protein match is: associated molecule with the SH3 domain of STAM 3 (TAIR:AT4G16144.1)%3B Has 1093 Blast hits to 1091 proteins in 231 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 401%3B Fungi - 313%3B Plants - 274%3B Viruses - 0%3B Other Eukaryotes - 105 (source: NCBI BLink).; locus_type=protein_coding
AT1G10600.2	chr1:003503907	0.0	W/3503907-3503917,3504024-3504113,3504359-3504392,3504569-3504643,3504737-3504799,3504882-3504934,3505016-3505190	AT1G10600.2 CDS AT1G10600 ID=AT1G10600.2; Parent=AT1G10600; Name=AT1G10600.2; Note=associated molecule with the SH3 domain of STAM 2; conf_class=2; symbol=AMSH2; full_name=associated molecule with the SH3 domain of STAM 2; computational_description=associated molecule with the SH3 domain of STAM 2 (AMSH2)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: ubiquitin-dependent protein catabolic process%3B LOCATED IN: chloroplast%3B EXPRESSED IN: cultured cell%3B CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555)%3B BEST Arabidopsis thaliana protein match is: associated molecule with the SH3 domain of STAM 3 (TAIR:AT4G16144.1)%3B Has 1093 Blast hits to 1091 proteins in 231 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 401%3B Fungi - 313%3B Plants - 274%3B Viruses - 0%3B Other Eukaryotes - 105 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:16934950, PMID:20543027, PMID:23800962, locus:2019903; locus_type=protein_coding
AT1TE11410	chr1:003506360	0.0	W/3506360-3506498	AT1TE11410 transposable_element AT1TE11410 ID=AT1TE11410; Name=AT1TE11410; Alias=ATCOPIA68
AT1G10610.1	chr1:003506463	0.0	W/3506463-3506572,3507032-3507229,3507309-3507372,3507450-3507518,3507599-3508033,3508137-3508337,3508416-3508592,3508681-3508752	AT1G10610.1 CDS AT1G10610 ID=AT1G10610.1; Parent=AT1G10610; Name=AT1G10610.1; Note=basic helix-loop-helix (bHLH) DNA-binding superfamily protein; conf_class=2; computational_description=basic helix-loop-helix (bHLH) DNA-binding superfamily protein%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G16910.1)%3B Has 1439 Blast hits to 1421 proteins in 116 species: Archae - 0%3B Bacteria - 21%3B Metazoa - 63%3B Fungi - 6%3B Plants - 1338%3B Viruses - 0%3B Other Eukaryotes - 11 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:12679534, PMID:12897250, PMID:14600211, PMID:15531708, PMID:16831835, locus:2020003; locus_type=protein_coding
AT1G10610.2	chr1:003506537	0.0	W/3506537-3506556,3507032-3507229,3507309-3507372,3507450-3507518,3507599-3508033,3508137-3508337,3508416-3508592,3508681-3508752	AT1G10610.2 CDS AT1G10610 ID=AT1G10610.2; Parent=AT1G10610; Name=AT1G10610.2; Note=basic helix-loop-helix (bHLH) DNA-binding superfamily protein; computational_description=basic helix-loop-helix (bHLH) DNA-binding superfamily protein%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G16910.1)%3B Has 1439 Blast hits to 1421 proteins in 116 species: Archae - 0%3B Bacteria - 21%3B Metazoa - 63%3B Fungi - 6%3B Plants - 1338%3B Viruses - 0%3B Other Eukaryotes - 11 (source: NCBI BLink).; Dbxref=PMID:11118137, PMID:12679534, PMID:12897250, PMID:14600211, PMID:15531708, PMID:16831835, locus:2020003; locus_type=protein_coding
AT1G10610.3	chr1:003507213	0.0	W/3507213-3507229,3507309-3507372,3507450-3507518,3507599-3508033,3508137-3508337,3508416-3508592,3508681-3508752	AT1G10610.3 CDS AT1G10610 ID=AT1G10610.3; Parent=AT1G10610; Name=AT1G10610.3; Note=basic helix-loop-helix (bHLH) DNA-binding superfamily protein; computational_description=basic helix-loop-helix (bHLH) DNA-binding superfamily protein%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G16910.1)%3B Has 1439 Blast hits to 1421 proteins in 116 species: Archae - 0%3B Bacteria - 21%3B Metazoa - 63%3B Fungi - 6%3B Plants - 1338%3B Viruses - 0%3B Other Eukaryotes - 11 (source: NCBI BLink).; Dbxref=PMID:11118137, PMID:12679534, PMID:12897250, PMID:14600211, PMID:15531708, PMID:16831835, locus:2020003; locus_type=protein_coding
AT1G10620.1	chr1:003509001	0.0	C/3509001-3509243,3509341-3509502,3509599-3509746,3509833-3509909,3510034-3510104,3510231-3510317,3510479-3510919,3511048-3511975	AT1G10620.1 CDS AT1G10620 ID=AT1G10620.1; Parent=AT1G10620; Name=AT1G10620.1; Note=Protein kinase superfamily protein; curator_summary=Encodes a member of the proline-rich extensin-like receptor kinase (PERK) family. This family consists of 15 predicted receptor kinases (PMID: 15653807).; conf_class=4; symbol=PERK11; Alias=AtPERK11, proline-rich extensin-like receptor kinase 11; full_name=proline-rich extensin-like receptor kinase 11; computational_description=Protein kinase superfamily protein%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B EXPRESSED IN: sepal%2C male gametophyte%2C flower%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase-like domain (InterPro:IPR011009)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G23540.1)%3B Has 259832 Blast hits to 189065 proteins in 5658 species: Archae - 530%3B Bacteria - 41689%3B Metazoa - 96109%3B Fungi - 30957%3B Plants - 48835%3B Viruses - 4506%3B Other Eukaryotes - 37206 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:12374299, PMID:15653807, PMID:18775970, PMID:20736450, locus:2019938; locus_type=protein_coding
AT1G10630.1	chr1:003513189	0.0	C/3513189-3513194,3513351-3513432,3513525-3513643,3513730-3513849,3513935-3514005,3514083-3514230	AT1G10630.1 CDS AT1G10630 ID=AT1G10630.1; Parent=AT1G10630; Name=AT1G10630.1; Note=ADP-ribosylation factor A1F; curator_summary=A member of ARF GTPase family. A thaliana has 21 members of this family%2C known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. The gene is shown to play a role in cell division%2C cell expansion and cellulose production using antisense construct.; conf_class=2; symbol=ARFA1F; Alias=ATARFA1F, ADP-ribosylation factor A1F; full_name=ADP-ribosylation factor A1F; computational_description=ADP-ribosylation factor A1F (ARFA1F)%3B FUNCTIONS IN: phospholipase activator activity%2C GTP binding%2C copper ion binding%3B INVOLVED IN: N-terminal protein myristoylation%3B LOCATED IN: plasma membrane%2C membrane%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688)%2C Small GTP-binding protein (InterPro:IPR005225)%2C ARF/SAR superfamily (InterPro:IPR006689)%3B BEST Arabidopsis thaliana protein match is: Ras-related small GTP-binding family protein (TAIR:AT2G47170.1)%3B Has 15022 Blast hits to 15003 proteins in 509 species: Archae - 14%3B Bacteria - 51%3B Metazoa - 7710%3B Fungi - 1942%3B Plants - 2027%3B Viruses - 3%3B Other Eukaryotes - 3275 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12644670, PMID:12912986, PMID:14593172, PMID:15060130, PMID:15723828, PMID:16247729, PMID:18775970, PMID:23931732, locus:2019948; locus_type=protein_coding
AT1G10630.2	chr1:003513189	0.0	C/3513189-3513194,3513351-3513432,3513525-3513643,3513730-3513849,3513935-3514005,3514083-3514230	AT1G10630.2 CDS AT1G10630 ID=AT1G10630.2; Parent=AT1G10630; Name=AT1G10630.2; Note=ADP-ribosylation factor A1F; symbol=ARFA1F; Alias=ATARFA1F, ADP-ribosylation factor A1F; full_name=ADP-ribosylation factor A1F; Dbxref=PMID:12644670, PMID:12912986, PMID:14593172, PMID:15060130, PMID:15723828, PMID:16247729, PMID:18775970, PMID:23931732, locus:2019948; curator_summary=A member of ARF GTPase family. A thaliana has 21 members of this family%2C known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. The gene is shown to play a role in cell division%2C cell expansion and cellulose production using antisense construct.; computational_description=ADP-ribosylation factor A1F (ARFA1F)%3B FUNCTIONS IN: phospholipase activator activity%2C GTP binding%2C copper ion binding%3B INVOLVED IN: N-terminal protein myristoylation%3B LOCATED IN: plasma membrane%2C membrane%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688)%2C Small GTP-binding protein (InterPro:IPR005225)%2C ARF/SAR superfamily (InterPro:IPR006689)%3B BEST Arabidopsis thaliana protein match is: Ras-related small GTP-binding family protein (TAIR:AT2G47170.1)%3B Has 15022 Blast hits to 15003 proteins in 509 species: Archae - 14%3B Bacteria - 51%3B Metazoa - 7710%3B Fungi - 1942%3B Plants - 2027%3B Viruses - 3%3B Other Eukaryotes - 3275 (source: NCBI BLink).; locus_type=protein_coding
AT1G04807.1	chr1:003514770	0.0	W/3514770-3515346	AT1G04807.1 lnc_RNA AT1G04807 ID=AT1G04807.1; Parent=AT1G04807; Name=AT1G04807.1; locus_type=long_noncoding_rna
AT1G10640.1	chr1:003515478	0.0	C/3515478-3516061,3516140-3516347,3516417-3516461,3516550-3516771,3516848-3516979,3517400-3517807	AT1G10640.1 CDS AT1G10640 ID=AT1G10640.1; Parent=AT1G10640; Name=AT1G10640.1; Note=Pectin lyase-like superfamily protein; conf_class=2; computational_description=Pectin lyase-like superfamily protein%3B FUNCTIONS IN: polygalacturonase activity%3B INVOLVED IN: carbohydrate metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 18 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050)%2C Parallel beta-helix repeat (InterPro:IPR006626)%2C Glycoside hydrolase%2C family 28 (InterPro:IPR000743)%2C Pectin lyase fold (InterPro:IPR012334)%3B BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G60590.1)%3B Has 4327 Blast hits to 4306 proteins in 507 species: Archae - 6%3B Bacteria - 1323%3B Metazoa - 14%3B Fungi - 1302%3B Plants - 1545%3B Viruses - 0%3B Other Eukaryotes - 137 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12953064, PMID:14576160, PMID:15546358, PMID:17010199, PMID:18650403, PMID:20736450, PMID:23056537, locus:2019963; locus_type=protein_coding
AT1TE11450	chr1:003519607	0.0	W/3519607-3519820,3519876-3519979	AT1TE11450 transposable_element AT1TE11450 ID=AT1TE11450; Name=AT1TE11450; Alias=BRODYAGA1A
AT1G10650.1	chr1:003524122	0.0	C/3524122-3524661,3524749-3525119,3525210-3525318	AT1G10650.1 CDS AT1G10650 ID=AT1G10650.1; Parent=AT1G10650; Name=AT1G10650.1; Note=SBP (S-ribonuclease binding protein) family protein; conf_class=2; computational_description=SBP (S-ribonuclease binding protein) family protein%3B FUNCTIONS IN: zinc ion binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C S-ribonuclease binding protein%2C SBP1%2C pollen (InterPro:IPR017066)%3B BEST Arabidopsis thaliana protein match is: SBP (S-ribonuclease binding protein) family protein (TAIR:AT1G60610.3)%3B Has 1212 Blast hits to 1212 proteins in 167 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 524%3B Fungi - 0%3B Plants - 416%3B Viruses - 105%3B Other Eukaryotes - 165 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11983057, PMID:12383089, PMID:15644464, PMID:16359384, PMID:18775970, locus:2019983; locus_type=protein_coding
AT1G10650.2	chr1:003524122	0.0	C/3524122-3524661,3524749-3525060	AT1G10650.2 CDS AT1G10650 ID=AT1G10650.2; Parent=AT1G10650; Name=AT1G10650.2; Note=SBP (S-ribonuclease binding protein) family protein; conf_class=2; computational_description=SBP (S-ribonuclease binding protein) family protein%3B FUNCTIONS IN: zinc ion binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C S-ribonuclease binding protein%2C SBP1%2C pollen (InterPro:IPR017066)%3B BEST Arabidopsis thaliana protein match is: SBP (S-ribonuclease binding protein) family protein (TAIR:AT1G60610.3)%3B Has 1212 Blast hits to 1212 proteins in 167 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 524%3B Fungi - 0%3B Plants - 416%3B Viruses - 105%3B Other Eukaryotes - 165 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11983057, PMID:12383089, PMID:15644464, PMID:16359384, PMID:18775970, locus:2019983; locus_type=protein_coding
AT1TE11470	chr1:003526587	0.0	W/3526587-3527171	AT1TE11470 transposable_element AT1TE11470 ID=AT1TE11470; Name=AT1TE11470; Alias=AT9TSD1
AT1TE11475	chr1:003527230	0.0	W/3527230-3527497	AT1TE11475 transposable_element AT1TE11475 ID=AT1TE11475; Name=AT1TE11475; Alias=BRODYAGA1A
AT1G04813.1	chr1:003529514	0.0	C/3529514-3529759	AT1G04813.1 lnc_RNA AT1G04813 ID=AT1G04813.1; Parent=AT1G04813; Name=AT1G04813.1; locus_type=long_noncoding_rna
AT1G10657.1	chr1:003530652	0.0	W/3530652-3530729,3530822-3530927,3531193-3531342,3531479-3531522	AT1G10657.1 CDS AT1G10657 ID=AT1G10657.1; Parent=AT1G10657; Name=AT1G10657.1; Note=transmembrane protein; conf_class=2; computational_description=Plant protein 1589 of unknown function%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589%2C plant (InterPro:IPR006476)%3B BEST Arabidopsis thaliana protein match is: Plant protein 1589 of unknown function (TAIR:AT3G55240.1)%3B Has 115 Blast hits to 115 proteins in 14 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 115%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:4010713425; locus_type=protein_coding
AT1G10657.2	chr1:003530652	0.0	W/3530652-3530729,3530822-3530927,3531265-3531342,3531479-3531522	AT1G10657.2 CDS AT1G10657 ID=AT1G10657.2; Parent=AT1G10657; Name=AT1G10657.2; Note=transmembrane protein; conf_class=2; computational_description=Plant protein 1589 of unknown function%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589%2C plant (InterPro:IPR006476)%3B BEST Arabidopsis thaliana protein match is: Plant protein 1589 of unknown function (TAIR:AT3G55240.1)%3B Has 115 Blast hits to 115 proteins in 14 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 115%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:4010713425; locus_type=protein_coding
AT1G10657.3	chr1:003530652	0.0	W/3530652-3530729,3530822-3530927,3531265-3531383	AT1G10657.3 CDS AT1G10657 ID=AT1G10657.3; Parent=AT1G10657; Name=AT1G10657.3; Note=transmembrane protein; conf_class=2; computational_description=Plant protein 1589 of unknown function%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589%2C plant (InterPro:IPR006476)%3B BEST Arabidopsis thaliana protein match is: Plant protein 1589 of unknown function (TAIR:AT3G55240.1)%3B Has 115 Blast hits to 115 proteins in 14 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 115%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:4010713425; locus_type=protein_coding
AT1G10657.4	chr1:003530652	0.0	W/3530652-3530729,3530822-3530927,3531193-3531383	AT1G10657.4 CDS AT1G10657 ID=AT1G10657.4; Parent=AT1G10657; Name=AT1G10657.4; Note=transmembrane protein; conf_class=3; computational_description=Plant protein 1589 of unknown function%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589%2C plant (InterPro:IPR006476)%3B BEST Arabidopsis thaliana protein match is: Plant protein 1589 of unknown function (TAIR:AT3G55240.1)%3B Has 115 Blast hits to 115 proteins in 14 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 115%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:4010713425; locus_type=protein_coding
AT1G10660.1	chr1:003533009	0.0	W/3533009-3533322,3533408-3533441,3533523-3533747,3533850-3533933,3534081-3534146,3534236-3534327,3534524-3534571,3534682-3534781	AT1G10660.1 CDS AT1G10660 ID=AT1G10660.1; Parent=AT1G10660; Name=AT1G10660.1; Note=transmembrane protein; conf_class=2; computational_description=unknown protein%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62960.1)%3B Has 155 Blast hits to 154 proteins in 22 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 10%3B Fungi - 4%3B Plants - 139%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17064408, PMID:18218973, PMID:18650403, PMID:18775970, PMID:20736450, locus:2019928; locus_type=protein_coding
AT1G10660.2	chr1:003533009	0.0	W/3533009-3533322,3533408-3533441,3533523-3533747,3533850-3533933,3534081-3534146,3534236-3534327,3534524-3534571,3534682-3534781	AT1G10660.2 CDS AT1G10660 ID=AT1G10660.2; Parent=AT1G10660; Name=AT1G10660.2; Note=transmembrane protein; conf_class=2; computational_description=unknown protein%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62960.1)%3B Has 155 Blast hits to 154 proteins in 22 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 10%3B Fungi - 4%3B Plants - 139%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17064408, PMID:18218973, PMID:18650403, PMID:18775970, PMID:20736450, locus:2019928; locus_type=protein_coding
AT1G10660.3	chr1:003533009	0.0	W/3533009-3533322,3533408-3533441,3533523-3533747,3533850-3533933,3534081-3534146,3534236-3534327,3534524-3534571,3534682-3534781	AT1G10660.3 CDS AT1G10660 ID=AT1G10660.3; Parent=AT1G10660; Name=AT1G10660.3; Note=transmembrane protein; conf_class=2; computational_description=unknown protein%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62960.1)%3B Has 155 Blast hits to 154 proteins in 22 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 10%3B Fungi - 4%3B Plants - 139%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17064408, PMID:18218973, PMID:18650403, PMID:18775970, PMID:20736450, locus:2019928; locus_type=protein_coding
AT1G10660.4	chr1:003533009	0.0	W/3533009-3533322,3533408-3533441,3533523-3533747,3533850-3533933,3534081-3534146,3534236-3534327,3534524-3534571,3534682-3534781	AT1G10660.4 CDS AT1G10660 ID=AT1G10660.4; Parent=AT1G10660; Name=AT1G10660.4; Note=transmembrane protein; conf_class=2; computational_description=unknown protein%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62960.1)%3B Has 155 Blast hits to 154 proteins in 22 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 10%3B Fungi - 4%3B Plants - 139%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17064408, PMID:18218973, PMID:18650403, PMID:18775970, PMID:20736450, locus:2019928; locus_type=protein_coding
AT1G10670.1	chr1:003535787	0.0	W/3535787-3535885,3536131-3536307,3536387-3536548,3536650-3536730,3536829-3536880,3536974-3537088,3537159-3537240,3537337-3537432,3537516-3537617,3537695-3537811,3537910-3538098	AT1G10670.1 CDS AT1G10670 ID=AT1G10670.1; Parent=AT1G10670; Name=AT1G10670.1; Note=ATP-citrate lyase A-1; curator_summary=One of the three genes encoding subunit A of the trimeric protein ATP Citrate Lyase. Antisense ACLA-1 plants cause a reduction in cytosolic acetyl-CoA metabolism and have upregulation of stress-related genes and down-regulation of primary metabolism and growth genes%2C suggesting the mutation restricts normal growth and developmental processes and puts the plant into a state of stress.; conf_class=2; symbol=ACLA-1; full_name=ATP-citrate lyase A-1; computational_description=ATP-citrate lyase A-1 (ACLA-1)%3B CONTAINS InterPro DOMAIN/s: ATP-grasp fold%2C subdomain 2 (InterPro:IPR013816)%2C ATP-grasp fold%2C succinyl-CoA synthetase-type (InterPro:IPR013650)%2C Succinyl-CoA synthetase-like (InterPro:IPR016102)%3B BEST Arabidopsis thaliana protein match is: ATP-citrate lyase A-2 (TAIR:AT1G60810.1)%3B Has 5465 Blast hits to 5464 proteins in 1555 species: Archae - 120%3B Bacteria - 3046%3B Metazoa - 362%3B Fungi - 200%3B Plants - 107%3B Viruses - 0%3B Other Eukaryotes - 1630 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12805597, PMID:15608338, PMID:15531708, PMID:16712733, PMID:16805732, PMID:18650403, PMID:18775970, PMID:23505340, locus:2019943; locus_type=protein_coding
AT1G10670.2	chr1:003535787	0.0	W/3535787-3535885,3536131-3536307,3536387-3536548,3536650-3536730,3536829-3536880,3536974-3537088,3537159-3537240,3537337-3537432,3537516-3537617,3537695-3537811,3537910-3538098	AT1G10670.2 CDS AT1G10670 ID=AT1G10670.2; Parent=AT1G10670; Name=AT1G10670.2; Note=ATP-citrate lyase A-1; curator_summary=One of the three genes encoding subunit A of the trimeric protein ATP Citrate Lyase. Antisense ACLA-1 plants cause a reduction in cytosolic acetyl-CoA metabolism and have upregulation of stress-related genes and down-regulation of primary metabolism and growth genes%2C suggesting the mutation restricts normal growth and developmental processes and puts the plant into a state of stress.; conf_class=2; symbol=ACLA-1; full_name=ATP-citrate lyase A-1; computational_description=ATP-citrate lyase A-1 (ACLA-1)%3B CONTAINS InterPro DOMAIN/s: ATP-grasp fold%2C subdomain 2 (InterPro:IPR013816)%2C ATP-grasp fold%2C succinyl-CoA synthetase-type (InterPro:IPR013650)%2C Succinyl-CoA synthetase-like (InterPro:IPR016102)%3B BEST Arabidopsis thaliana protein match is: ATP-citrate lyase A-2 (TAIR:AT1G60810.1)%3B Has 5465 Blast hits to 5464 proteins in 1555 species: Archae - 120%3B Bacteria - 3046%3B Metazoa - 362%3B Fungi - 200%3B Plants - 107%3B Viruses - 0%3B Other Eukaryotes - 1630 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12805597, PMID:15608338, PMID:15531708, PMID:16712733, PMID:16805732, PMID:18650403, PMID:18775970, PMID:23505340, locus:2019943; locus_type=protein_coding
AT1G10670.3	chr1:003535787	0.0	W/3535787-3535885,3535961-3536020,3536131-3536307,3536387-3536548,3536650-3536730,3536829-3536880,3536974-3537088,3537159-3537240,3537337-3537432,3537516-3537617,3537695-3537811,3537910-3538098	AT1G10670.3 CDS AT1G10670 ID=AT1G10670.3; Parent=AT1G10670; Name=AT1G10670.3; Note=ATP-citrate lyase A-1; curator_summary=One of the three genes encoding subunit A of the trimeric protein ATP Citrate Lyase. Antisense ACLA-1 plants cause a reduction in cytosolic acetyl-CoA metabolism and have upregulation of stress-related genes and down-regulation of primary metabolism and growth genes%2C suggesting the mutation restricts normal growth and developmental processes and puts the plant into a state of stress.; conf_class=6; symbol=ACLA-1; full_name=ATP-citrate lyase A-1; computational_description=ATP-citrate lyase A-1 (ACLA-1)%3B CONTAINS InterPro DOMAIN/s: ATP-grasp fold%2C subdomain 2 (InterPro:IPR013816)%2C ATP-grasp fold%2C succinyl-CoA synthetase-type (InterPro:IPR013650)%2C Succinyl-CoA synthetase-like (InterPro:IPR016102)%3B BEST Arabidopsis thaliana protein match is: ATP-citrate lyase A-2 (TAIR:AT1G60810.1)%3B Has 5465 Blast hits to 5464 proteins in 1555 species: Archae - 120%3B Bacteria - 3046%3B Metazoa - 362%3B Fungi - 200%3B Plants - 107%3B Viruses - 0%3B Other Eukaryotes - 1630 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:12805597, PMID:15608338, PMID:15531708, PMID:16712733, PMID:16805732, PMID:18650403, PMID:18775970, PMID:23505340, locus:2019943; locus_type=protein_coding
AT1G10670.4	chr1:003535787	0.0	W/3535787-3535885,3536131-3536307,3536387-3536548,3536650-3536730,3536829-3536880,3536974-3537088,3537159-3537240,3537337-3537432,3537516-3537617,3537695-3537811,3537910-3538098	AT1G10670.4 CDS AT1G10670 ID=AT1G10670.4; Parent=AT1G10670; Name=AT1G10670.4; Note=ATP-citrate lyase A-1; curator_summary=One of the three genes encoding subunit A of the trimeric protein ATP Citrate Lyase. Antisense ACLA-1 plants cause a reduction in cytosolic acetyl-CoA metabolism and have upregulation of stress-related genes and down-regulation of primary metabolism and growth genes%2C suggesting the mutation restricts normal growth and developmental processes and puts the plant into a state of stress.; conf_class=4; symbol=ACLA-1; full_name=ATP-citrate lyase A-1; computational_description=ATP-citrate lyase A-1 (ACLA-1)%3B CONTAINS InterPro DOMAIN/s: ATP-grasp fold%2C subdomain 2 (InterPro:IPR013816)%2C ATP-grasp fold%2C succinyl-CoA synthetase-type (InterPro:IPR013650)%2C Succinyl-CoA synthetase-like (InterPro:IPR016102)%3B BEST Arabidopsis thaliana protein match is: ATP-citrate lyase A-2 (TAIR:AT1G60810.1)%3B Has 5465 Blast hits to 5464 proteins in 1555 species: Archae - 120%3B Bacteria - 3046%3B Metazoa - 362%3B Fungi - 200%3B Plants - 107%3B Viruses - 0%3B Other Eukaryotes - 1630 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:12805597, PMID:15608338, PMID:15531708, PMID:16712733, PMID:16805732, PMID:18650403, PMID:18775970, PMID:23505340, locus:2019943; locus_type=protein_coding
AT1G10680.1	chr1:003538470	0.0	C/3538470-3538679,3538801-3539141,3539280-3539692,3539772-3540019,3540107-3540348,3540447-3540832,3540925-3541292,3541374-3541902,3541989-3542248,3542337-3542537,3542745-3542920,3543003-3543057,3543528-3543782	AT1G10680.1 CDS AT1G10680 ID=AT1G10680.1; Parent=AT1G10680; Name=AT1G10680.1; Note=P-glycoprotein 10; conf_class=4; symbol=PGP10; Alias=ABCB10, ATP-binding cassette B10; full_name=P-glycoprotein 10; computational_description=P-glycoprotein 10 (PGP10)%3B FUNCTIONS IN: ATPase activity%2C coupled to transmembrane movement of substances%3B INVOLVED IN: transport%2C transmembrane transport%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: sperm cell%2C male gametophyte%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%3B CONTAINS InterPro DOMAIN/s: ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C ABC transporter-like (InterPro:IPR003439)%2C ABC transporter%2C transmembrane domain%2C type 1 (InterPro:IPR011527)%2C ABC transporter integral membrane type 1 (InterPro:IPR017940)%2C ABC transporter%2C transmembrane domain (InterPro:IPR001140)%2C ABC transporter%2C conserved site (InterPro:IPR017871)%3B BEST Arabidopsis thaliana protein match is: P-glycoprotein 2 (TAIR:AT4G25960.1)%3B Has 851951 Blast hits to 394154 proteins in 4179 species: Archae - 14690%3B Bacteria - 665527%3B Metazoa - 18433%3B Fungi - 12853%3B Plants - 9433%3B Viruses - 32%3B Other Eukaryotes - 130983 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:11346655, PMID:11855639, PMID:12644654, PMID:14517332, PMID:14671022, PMID:16684236, PMID:17164256, PMID:18299247, PMID:20736450, locus:2019958; locus_type=protein_coding
AT1G10680.2	chr1:003538655	0.0	C/3538655-3538723,3538801-3539141,3539280-3539692,3539772-3540019,3540107-3540348,3540447-3540832,3540925-3541292,3541374-3541902,3541989-3542248,3542337-3542537,3542745-3542920,3543003-3543057,3543528-3543782	AT1G10680.2 CDS AT1G10680 ID=AT1G10680.2; Parent=AT1G10680; Name=AT1G10680.2; Note=P-glycoprotein 10; symbol=PGP10; Alias=ABCB10, ATP-binding cassette B10; full_name=P-glycoprotein 10; computational_description=P-glycoprotein 10 (PGP10)%3B FUNCTIONS IN: ATPase activity%2C coupled to transmembrane movement of substances%3B INVOLVED IN: transport%2C transmembrane transport%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: sperm cell%2C male gametophyte%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%3B CONTAINS InterPro DOMAIN/s: ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C ABC transporter-like (InterPro:IPR003439)%2C ABC transporter%2C transmembrane domain%2C type 1 (InterPro:IPR011527)%2C ABC transporter integral membrane type 1 (InterPro:IPR017940)%2C ABC transporter%2C transmembrane domain (InterPro:IPR001140)%2C ABC transporter%2C conserved site (InterPro:IPR017871)%3B BEST Arabidopsis thaliana protein match is: P-glycoprotein 2 (TAIR:AT4G25960.1)%3B Has 851951 Blast hits to 394154 proteins in 4179 species: Archae - 14690%3B Bacteria - 665527%3B Metazoa - 18433%3B Fungi - 12853%3B Plants - 9433%3B Viruses - 32%3B Other Eukaryotes - 130983 (source: NCBI BLink).; Dbxref=PMID:11346655, PMID:11855639, PMID:12644654, PMID:14517332, PMID:14671022, PMID:16684236, PMID:17164256, PMID:18299247, PMID:20736450, locus:2019958; locus_type=protein_coding
AT1TE11530	chr1:003544313	0.0	C/3544313-3544749	AT1TE11530 transposable_element AT1TE11530 ID=AT1TE11530; Name=AT1TE11530; Alias=BRODYAGA1A
AT1G10682.1	chr1:003544913	0.0	C/3544913-3545614	AT1G10682.1 ncRNA AT1G10682 ID=AT1G10682.1; Parent=AT1G10682; Dbxref=locus:4515102515; Name=AT1G10682.1; locus_type=other_rna
AT1TE11535	chr1:003547014	0.0	C/3547014-3547591	AT1TE11535 transposable_element AT1TE11535 ID=AT1TE11535; Name=AT1TE11535; Alias=BRODYAGA1
AT1TE11540	chr1:003547592	0.0	C/3547592-3547613	AT1TE11540 transposable_element AT1TE11540 ID=AT1TE11540; Name=AT1TE11540; Alias=BRODYAGA1A
AT1TE11545	chr1:003547614	0.0	C/3547614-3547648	AT1TE11545 transposable_element AT1TE11545 ID=AT1TE11545; Name=AT1TE11545; Alias=HELITRONY1D
AT1G10690.1	chr1:003550236	0.0	C/3550236-3550568	AT1G10690.1 CDS AT1G10690 ID=AT1G10690.1; Parent=AT1G10690; Name=AT1G10690.1; Note=cyclin-dependent kinase inhibitor; conf_class=1; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G60783.1)%3B Has 59 Blast hits to 59 proteins in 9 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 59%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16684236, PMID:20706207, locus:2196459; locus_type=protein_coding
AT1TE11555	chr1:003550865	0.0	C/3550865-3551041	AT1TE11555 transposable_element AT1TE11555 ID=AT1TE11555; Name=AT1TE11555; Alias=ATREP9
AT1TE11560	chr1:003551042	0.0	W/3551042-3551135	AT1TE11560 transposable_element AT1TE11560 ID=AT1TE11560; Name=AT1TE11560; Alias=ATMUN1
AT1TE11565	chr1:003551136	0.0	C/3551136-3552618	AT1TE11565 transposable_element AT1TE11565 ID=AT1TE11565; Name=AT1TE11565; Alias=HELITRONY1A
AT1TE11570	chr1:003552619	0.0	W/3552619-3552896	AT1TE11570 transposable_element AT1TE11570 ID=AT1TE11570; Name=AT1TE11570; Alias=HELITRONY3
AT1G10700.1	chr1:003554157	0.0	W/3554157-3554548,3554821-3555136,3555227-3555322,3555421-3555489,3555722-3555850,3555934-3556033,3556141-3556274	AT1G10700.1 CDS AT1G10700 ID=AT1G10700.1; Parent=AT1G10700; Name=AT1G10700.1; Note=phosphoribosyl pyrophosphate (PRPP) synthase 3; curator_summary=Encodes a P-independent phosphoribosyl pyrophosphate (PRPP) synthase.; conf_class=2; symbol=PRS3; full_name=phosphoribosyl pyrophosphate (PRPP) synthase 3; computational_description=phosphoribosyl pyrophosphate (PRPP) synthase 3 (PRS3)%3B FUNCTIONS IN: magnesium ion binding%2C ribose phosphate diphosphokinase activity%3B INVOLVED IN: nucleotide biosynthetic process%2C nucleoside metabolic process%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Phosphoribosyltransferase (InterPro:IPR000836)%2C Phosphoribosyl pyrophosphokinase (InterPro:IPR005946)%3B BEST Arabidopsis thaliana protein match is: Phosphoribosyltransferase family protein (TAIR:AT2G42910.1)%3B Has 9536 Blast hits to 9535 proteins in 2732 species: Archae - 207%3B Bacteria - 5887%3B Metazoa - 527%3B Fungi - 344%3B Plants - 201%3B Viruses - 8%3B Other Eukaryotes - 2362 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:17059404, PMID:18775970, PMID:15820655, PMID:20736450, locus:2019973; locus_type=protein_coding
AT1G10700.2	chr1:003554157	0.0	W/3554157-3554548,3554821-3555136,3555227-3555322,3555421-3555489,3555574-3555594	AT1G10700.2 CDS AT1G10700 ID=AT1G10700.2; Parent=AT1G10700; Name=AT1G10700.2; Note=phosphoribosyl pyrophosphate (PRPP) synthase 3; symbol=PRS3; full_name=phosphoribosyl pyrophosphate (PRPP) synthase 3; curator_summary=Encodes a P-independent phosphoribosyl pyrophosphate (PRPP) synthase.; computational_description=phosphoribosyl pyrophosphate (PRPP) synthase 3 (PRS3)%3B FUNCTIONS IN: magnesium ion binding%2C ribose phosphate diphosphokinase activity%3B INVOLVED IN: nucleotide biosynthetic process%2C nucleoside metabolic process%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Phosphoribosyltransferase (InterPro:IPR000836)%2C Phosphoribosyl pyrophosphokinase (InterPro:IPR005946)%3B BEST Arabidopsis thaliana protein match is: Phosphoribosyltransferase family protein (TAIR:AT2G42910.1)%3B Has 9536 Blast hits to 9535 proteins in 2732 species: Archae - 207%3B Bacteria - 5887%3B Metazoa - 527%3B Fungi - 344%3B Plants - 201%3B Viruses - 8%3B Other Eukaryotes - 2362 (source: NCBI BLink).; Dbxref=PMID:14576160, PMID:17059404, PMID:18775970, PMID:15820655, PMID:20736450, locus:2019973; locus_type=protein_coding
AT1G10705.1	chr1:003557114	0.0	W/3557114-3557457	AT1G10705.1 pseudogenic_transcript AT1G10705 ID=AT1G10705.1; Parent=AT1G10705; Name=AT1G10705.1; index=1; Note=pseudogene; curator_summary=Encodes a Maternally expressed gene (MEG) family protein [pseudogene]; Dbxref=PMID:20032078, locus:4010713426, PMID:20032078, PMID:20032078, locus:4010713426; locus_type=pseudogene; computational_description=pseudogene of EMBRYO SURROUNDING FACTOR-like protein
AT1TE11580	chr1:003557471	0.0	C/3557471-3557938	AT1TE11580 transposable_element AT1TE11580 ID=AT1TE11580; Name=AT1TE11580; Alias=HELITRON2
AT1G10710.1	chr1:003558423	0.0	W/3558423-3558695,3558864-3558980,3559150-3559215,3559353-3559462,3559542-3559700,3559781-3559965,3560057-3560109,3560197-3560224,3560349-3560407	AT1G10710.1 CDS AT1G10710 ID=AT1G10710.1; Parent=AT1G10710; Name=AT1G10710.1; Note=poor homologous synapsis 1; curator_summary=Computational predictions suggested the presence of a small cysteine-rich protein beginning in intron 9 (Silverstein 2007)%2C but subsequent analysis revealed that this region contains a tenth exon for the At1g10710 gene. PHS1 regulates recombination and pairing of homologous chromosomes during meiotic prophase by controlling transport of RAD50 from cytoplasm to the nucleus.; conf_class=1; symbol=PHS1; full_name=POOR HOMOLOGOUS SYNAPSIS 1; computational_description=POOR HOMOLOGOUS SYNAPSIS 1 (PHS1)%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10717.1)%3B Has 43 Blast hits to 42 proteins in 8 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 43%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:19918061, PMID:20736450, PMID:22518114, locus:2019908; locus_type=protein_coding
AT1G10710.2	chr1:003558423	0.0	W/3558423-3558695,3558864-3558980,3559150-3559215,3559353-3559415,3559654-3559700,3559781-3559965,3560057-3560109,3560197-3560224,3560349-3560407	AT1G10710.2 CDS AT1G10710 ID=AT1G10710.2; Parent=AT1G10710; Name=AT1G10710.2; Note=poor homologous synapsis 1; curator_summary=Computational predictions suggested the presence of a small cysteine-rich protein beginning in intron 9 (Silverstein 2007)%2C but subsequent analysis revealed that this region contains a tenth exon for the At1g10710 gene. PHS1 regulates recombination and pairing of homologous chromosomes during meiotic prophase by controlling transport of RAD50 from cytoplasm to the nucleus.; conf_class=1; symbol=PHS1; full_name=POOR HOMOLOGOUS SYNAPSIS 1; computational_description=POOR HOMOLOGOUS SYNAPSIS 1 (PHS1)%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10717.1)%3B Has 43 Blast hits to 42 proteins in 8 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 43%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:19918061, PMID:20736450, PMID:22518114, locus:2019908; locus_type=protein_coding
AT1G10715.1	chr1:003561149	0.0	W/3561149-3561209,3561296-3561495	AT1G10715.1 CDS AT1G10715 ID=AT1G10715.1; Parent=AT1G10715; Name=AT1G10715.1; Note=EMBRYO SURROUNDING FACTOR-like protein; Dbxref=UniProt:P0DKH1; locus_type=protein_coding
AT1G10717.1	chr1:003562180	0.0	W/3562180-3562243,3562346-3562554	AT1G10717.1 CDS AT1G10717 ID=AT1G10717.1; Parent=AT1G10717; Name=AT1G10717.1; Note=EMBRYO SURROUNDING FACTOR-like protein; curator_summary=Encodes a Maternally expressed gene (MEG) family protein; conf_class=4; Alias=ESF1.3, EMBRYO SURROUNDING FACTORS 1.3; computational_description=LOCATED IN: endomembrane system%3B BEST Arabidopsis thaliana protein match is: Maternally expressed gene (MEG) family protein (TAIR:AT1G27135.1)%3B Has 38 Blast hits to 38 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 38%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:24723605, locus:4010713427; locus_type=protein_coding
AT1G10720.1	chr1:003562964	0.0	W/3562964-3563579,3563680-3563867,3563961-3564446	AT1G10720.1 CDS AT1G10720 ID=AT1G10720.1; Parent=AT1G10720; Name=AT1G10720.1; Note=BSD domain-containing protein; conf_class=2; computational_description=BSD domain-containing protein%3B CONTAINS InterPro DOMAIN/s: BSD (InterPro:IPR005607)%3B BEST Arabidopsis thaliana protein match is: BSD domain-containing protein (TAIR:AT3G49800.1)%3B Has 1569 Blast hits to 1461 proteins in 180 species: Archae - 0%3B Bacteria - 14%3B Metazoa - 740%3B Fungi - 179%3B Plants - 264%3B Viruses - 21%3B Other Eukaryotes - 351 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, PMID:20736450, locus:2019993; locus_type=protein_coding
AT1TE11600	chr1:003564882	0.0	W/3564882-3564973	AT1TE11600 transposable_element AT1TE11600 ID=AT1TE11600; Name=AT1TE11600; Alias=HELITRONY3
AT1TE11605	chr1:003564974	0.0	W/3564974-3565127	AT1TE11605 transposable_element AT1TE11605 ID=AT1TE11605; Name=AT1TE11605; Alias=ATTIR16T3A
AT1G10730.1	chr1:003565463	0.0	W/3565463-3565591,3565732-3565878,3565985-3566047,3566158-3566334,3566409-3566512,3566605-3566712,3566837-3566933,3567028-3567125,3567226-3567367,3567443-3567565,3567681-3567779	AT1G10730.1 CDS AT1G10730 ID=AT1G10730.1; Parent=AT1G10730; Name=AT1G10730.1; Note=Clathrin adaptor complexes medium subunit family protein; conf_class=1; Alias=AP1M1, adaptor protein-1 mu-adaptin 1; computational_description=Clathrin adaptor complexes medium subunit family protein%3B INVOLVED IN: intracellular protein transport%2C transport%2C vesicle-mediated transport%3B LOCATED IN: clathrin vesicle coat%2C clathrin adaptor complex%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Clathrin adaptor%2C mu subunit%2C conserved site (InterPro:IPR018240)%2C Clathrin adaptor%2C mu subunit%2C C-terminal (InterPro:IPR008968)%2C Clathrin adaptor%2C mu subunit (InterPro:IPR001392)%2C Longin-like (InterPro:IPR011012)%3B BEST Arabidopsis thaliana protein match is: Clathrin adaptor complexes medium subunit family protein (TAIR:AT1G60780.1)%3B Has 2200 Blast hits to 2139 proteins in 330 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1104%3B Fungi - 504%3B Plants - 215%3B Viruses - 0%3B Other Eukaryotes - 377 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:18650403, PMID:20736450, PMID:23733933, locus:2019913; locus_type=protein_coding
AT1G10740.1	chr1:003568343	0.0	C/3568343-3568547,3568616-3568747,3568829-3569266,3569450-3569553,3569641-3569741,3569837-3569940,3570041-3570135,3570224-3570466	AT1G10740.1 CDS AT1G10740 ID=AT1G10740.1; Parent=AT1G10740; Name=AT1G10740.1; Note=alpha/beta-Hydrolases superfamily protein; conf_class=2; computational_description=alpha/beta-Hydrolases superfamily protein%3B INVOLVED IN: glycerol biosynthetic process%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G23330.1)%3B Has 782 Blast hits to 782 proteins in 229 species: Archae - 0%3B Bacteria - 631%3B Metazoa - 3%3B Fungi - 4%3B Plants - 47%3B Viruses - 0%3B Other Eukaryotes - 97 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15254538, PMID:18775970, PMID:23505340, locus:2019923; locus_type=protein_coding
AT1G10740.3	chr1:003568343	0.0	C/3568343-3568547,3568616-3568747,3568829-3569266,3569450-3569553,3569641-3569741,3569837-3569940,3570041-3570135,3570224-3570466	AT1G10740.3 CDS AT1G10740 ID=AT1G10740.3; Parent=AT1G10740; Name=AT1G10740.3; Note=alpha/beta-Hydrolases superfamily protein; conf_class=4; computational_description=alpha/beta-Hydrolases superfamily protein%3B INVOLVED IN: glycerol biosynthetic process%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G23330.1)%3B Has 782 Blast hits to 782 proteins in 229 species: Archae - 0%3B Bacteria - 631%3B Metazoa - 3%3B Fungi - 4%3B Plants - 47%3B Viruses - 0%3B Other Eukaryotes - 97 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:15254538, PMID:18775970, PMID:23505340, locus:2019923; locus_type=protein_coding
AT1G10740.4	chr1:003568343	0.0	C/3568343-3568547,3568616-3568747,3568829-3569266,3569450-3569553,3569641-3569741,3569837-3569940,3570041-3570135,3570224-3570466	AT1G10740.4 CDS AT1G10740 ID=AT1G10740.4; Parent=AT1G10740; Name=AT1G10740.4; Note=alpha/beta-Hydrolases superfamily protein; conf_class=4; computational_description=alpha/beta-Hydrolases superfamily protein%3B INVOLVED IN: glycerol biosynthetic process%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G23330.1)%3B Has 782 Blast hits to 782 proteins in 229 species: Archae - 0%3B Bacteria - 631%3B Metazoa - 3%3B Fungi - 4%3B Plants - 47%3B Viruses - 0%3B Other Eukaryotes - 97 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:15254538, PMID:18775970, PMID:23505340, locus:2019923; locus_type=protein_coding
AT1G10740.2	chr1:003568612	0.0	C/3568612-3568747,3568829-3569266,3569450-3569553,3569641-3569741,3569837-3569940,3570041-3570135,3570224-3570466	AT1G10740.2 CDS AT1G10740 ID=AT1G10740.2; Parent=AT1G10740; Name=AT1G10740.2; Note=alpha/beta-Hydrolases superfamily protein; conf_class=2; computational_description=alpha/beta-Hydrolases superfamily protein%3B INVOLVED IN: glycerol biosynthetic process%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G23330.1)%3B Has 782 Blast hits to 782 proteins in 229 species: Archae - 0%3B Bacteria - 631%3B Metazoa - 3%3B Fungi - 4%3B Plants - 47%3B Viruses - 0%3B Other Eukaryotes - 97 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15254538, PMID:18775970, PMID:23505340, locus:2019923; locus_type=protein_coding
AT1G10745.1	chr1:003572710	0.0	W/3572710-3572770,3572879-3573066	AT1G10745.1 CDS AT1G10745 ID=AT1G10745.1; Parent=AT1G10745; Name=AT1G10745.1; Note=maternally expressed family protein; curator_summary=Encodes a Maternally expressed gene (MEG) family protein; conf_class=4; Alias=ESF1.2, EMBRYO SURROUNDING FACTORS 1.2; computational_description=Maternally expressed gene (MEG) family protein%3B LOCATED IN: endomembrane system%3B BEST Arabidopsis thaliana protein match is: Maternally expressed gene (MEG) family protein (TAIR:AT1G10747.1)%3B Has 23 Blast hits to 23 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 23%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:24723605, locus:4010713428; locus_type=protein_coding
AT1TE11630	chr1:003573163	0.0	C/3573163-3573682	AT1TE11630 transposable_element AT1TE11630 ID=AT1TE11630; Name=AT1TE11630; Alias=ATREP10B
AT1G10747.1	chr1:003574312	0.0	W/3574312-3574375,3574449-3574636	AT1G10747.1 CDS AT1G10747 ID=AT1G10747.1; Parent=AT1G10747; Name=AT1G10747.1; Note=maternally expressed family protein; curator_summary=Encodes a Maternally expressed gene (MEG) family protein; conf_class=4; Alias=ESF1.1, EMBRYO SURROUNDING FACTORS 1.1; computational_description=Maternally expressed gene (MEG) family protein%3B LOCATED IN: endomembrane system%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10717.1)%3B Has 43 Blast hits to 43 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 43%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:24723605, locus:4010713429; locus_type=protein_coding
AT1G10750.1	chr1:003574986	0.0	C/3574986-3575363,3576020-3576166,3576289-3576342,3576445-3576609,3577327-3577536,3577625-3577711,3577948-3578310	AT1G10750.1 CDS AT1G10750 ID=AT1G10750.1; Parent=AT1G10750; Name=AT1G10750.1; Note=carboxyl-terminal peptidase%2C putative (DUF239); conf_class=1; computational_description=Protein of Unknown Function (DUF239)%3B INVOLVED IN: N-terminal protein myristoylation%3B EXPRESSED IN: 13 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239%2C plant (InterPro:IPR004314)%3B BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT1G23340.2)%3B Has 789 Blast hits to 744 proteins in 31 species: Archae - 0%3B Bacteria - 15%3B Metazoa - 0%3B Fungi - 10%3B Plants - 764%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12912986, PMID:20736450, locus:2019933; locus_type=protein_coding
AT1G10750.2	chr1:003575315	0.0	C/3575315-3575363,3576020-3576166,3576289-3576332,3576445-3576609,3577327-3577536,3577625-3577711,3577948-3578310	AT1G10750.2 CDS AT1G10750 ID=AT1G10750.2; Parent=AT1G10750; Name=AT1G10750.2; Note=carboxyl-terminal peptidase%2C putative (DUF239); computational_description=Protein of Unknown Function (DUF239)%3B INVOLVED IN: N-terminal protein myristoylation%3B EXPRESSED IN: 13 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239%2C plant (InterPro:IPR004314)%3B BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT1G23340.2)%3B Has 789 Blast hits to 744 proteins in 31 species: Archae - 0%3B Bacteria - 15%3B Metazoa - 0%3B Fungi - 10%3B Plants - 764%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=PMID:12912986, PMID:20736450, locus:2019933; locus_type=protein_coding
AT1G04817.1	chr1:003575377	0.0	W/3575377-3575814	AT1G04817.1 antisense_lncRNA AT1G04817 ID=AT1G04817.1; Parent=AT1G04817; Name=AT1G04817.1; description=Natural antisense transcript overlaps with AT1G10747; Note=Natural antisense transcript overlaps with AT1G10747; locus_type=antisense_long_noncoding_rna
AT1G10760.1	chr1:003581210	0.0	C/3581210-3581414,3581516-3581631,3581736-3581828,3581907-3582080,3582158-3582256,3582602-3582712,3583032-3583157,3583338-3583470,3583624-3583727,3583812-3584025,3584145-3584251,3584348-3584524,3584752-3584835,3584978-3585130,3585228-3585287,3585382-3585444,3585523-3585585,3585724-3585909,3585982-3586071,3586343-3586505,3586687-3586821,3587072-3587160,3587252-3587392,3587489-3587584,3587702-3587809,3587915-3588310,3588730-3588883,3588983-3589074,3589193-3589271,3589365-3589465,3589553-3589594,3589798-3590043	AT1G10760.1 CDS AT1G10760 ID=AT1G10760.1; Parent=AT1G10760; Name=AT1G10760.1; Note=Pyruvate phosphate dikinase%2C PEP/pyruvate binding domain-containing protein; curator_summary=Encodes an %26#945%3B-glucan%2C water dikinase required for starch degradation. Involved in cold-induced freezing tolerance. Mutations that eliminate the GWD protein or affect the dikinase domain of the enzyme dramatically reduce both the amount of phosphate in the amylopectin and the rate of starch degradation. Mature leaves of these mutants accumulate amounts of starch up to seven times greater than those in wild-type leaves. NMR analysis of the mutants%2C suggests that the gene is specifically involved in the phosphorylation of the glucosyl residues of starch at the C6 position.; conf_class=4; symbol=SEX1; Alias=GWD, GWD1, SOP, SOP1; full_name=STARCH EXCESS 1; computational_description=STARCH EXCESS 1 (SEX1)%3B FUNCTIONS IN: protein binding%2C alpha-glucan%2C water dikinase activity%3B INVOLVED IN: cold acclimation%2C response to symbiotic fungus%2C response to trehalose stimulus%2C circadian rhythm%2C starch catabolic process%3B LOCATED IN: mitochondrion%2C chloroplast stroma%2C chloroplast%2C chloroplast envelope%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Pyruvate phosphate dikinase%2C PEP/pyruvate-binding (InterPro:IPR002192)%3B BEST Arabidopsis thaliana protein match is: phosphoglucan%2C water dikinase (TAIR:AT4G24450.1)%3B Has 2623 Blast hits to 2596 proteins in 1116 species: Archae - 196%3B Bacteria - 1989%3B Metazoa - 24%3B Fungi - 8%3B Plants - 221%3B Viruses - 0%3B Other Eukaryotes - 185 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:9715535, PMID:11487701, PMID:12068097, PMID:12472685, PMID:12624767, PMID:14671022, PMID:15618411, PMID:15710607, PMID:15832687, PMID:15894744, PMID:15878986, PMID:15862090, PMID:16055686, PMID:16297066, PMID:17031512, PMID:17083680, PMID:17195036, PMID:17151136, PMID:17397506, PMID:17666166, PMID:18024995, PMID:18650403, PMID:18764922, PMID:19776162, PMID:20546137, PMID:20699404, PMID:18419779, PMID:21546247, PMID:21624897, PMID:21691153, PMID:21636428, PMID:22321580, PMID:22942388, PMID:23393426, PMID:23452177, PMID:23750161, PMID:24697163, PMID:24781197, PMID:24780916, PMID:25349324, locus:2019953; locus_type=protein_coding
AT1G10760.2	chr1:003581210	0.0	C/3581210-3581414,3581516-3581631,3581736-3581828,3581907-3582080,3582158-3582256,3582602-3582712,3583032-3583157,3583338-3583470,3583624-3583727,3583812-3584025,3584145-3584251,3584348-3584524,3584752-3584835,3584978-3585130,3585228-3585287,3585382-3585444,3585523-3585585,3585724-3585909,3585982-3586071,3586343-3586505,3586687-3586821,3587072-3587160,3587252-3587392,3587489-3587584,3587702-3587809,3587915-3588310,3588730-3588883,3588983-3589074,3589193-3589271,3589365-3589465,3589553-3589594,3589798-3590043	AT1G10760.2 CDS AT1G10760 ID=AT1G10760.2; Parent=AT1G10760; Name=AT1G10760.2; Note=Pyruvate phosphate dikinase%2C PEP/pyruvate binding domain-containing protein; symbol=SEX1; Alias=GWD, GWD1, SOP, SOP1; full_name=STARCH EXCESS 1; Dbxref=PMID:9715535, PMID:11487701, PMID:12068097, PMID:12472685, PMID:12624767, PMID:14671022, PMID:15618411, PMID:15710607, PMID:15832687, PMID:15894744, PMID:15878986, PMID:15862090, PMID:16055686, PMID:16297066, PMID:17031512, PMID:17083680, PMID:17195036, PMID:17151136, PMID:17397506, PMID:17666166, PMID:18024995, PMID:18650403, PMID:18764922, PMID:19776162, PMID:20546137, PMID:20699404, PMID:18419779, PMID:21546247, PMID:21624897, PMID:21691153, PMID:21636428, PMID:22321580, PMID:22942388, PMID:23393426, PMID:23452177, PMID:23750161, PMID:24697163, PMID:24781197, PMID:24780916, PMID:25349324, locus:2019953; curator_summary=Encodes an %26#945%3B-glucan%2C water dikinase required for starch degradation. Involved in cold-induced freezing tolerance. Mutations that eliminate the GWD protein or affect the dikinase domain of the enzyme dramatically reduce both the amount of phosphate in the amylopectin and the rate of starch degradation. Mature leaves of these mutants accumulate amounts of starch up to seven times greater than those in wild-type leaves. NMR analysis of the mutants%2C suggests that the gene is specifically involved in the phosphorylation of the glucosyl residues of starch at the C6 position.; computational_description=STARCH EXCESS 1 (SEX1)%3B FUNCTIONS IN: protein binding%2C alpha-glucan%2C water dikinase activity%3B INVOLVED IN: cold acclimation%2C response to symbiotic fungus%2C response to trehalose stimulus%2C circadian rhythm%2C starch catabolic process%3B LOCATED IN: mitochondrion%2C chloroplast stroma%2C chloroplast%2C chloroplast envelope%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Pyruvate phosphate dikinase%2C PEP/pyruvate-binding (InterPro:IPR002192)%3B BEST Arabidopsis thaliana protein match is: phosphoglucan%2C water dikinase (TAIR:AT4G24450.1)%3B Has 2623 Blast hits to 2596 proteins in 1116 species: Archae - 196%3B Bacteria - 1989%3B Metazoa - 24%3B Fungi - 8%3B Plants - 221%3B Viruses - 0%3B Other Eukaryotes - 185 (source: NCBI BLink).; locus_type=protein_coding
AT1G10760.3	chr1:003581210	0.0	C/3581210-3581414,3581516-3581631,3581736-3581828,3581907-3582080,3582158-3582256,3582602-3582712,3583032-3583157,3583338-3583470,3583624-3583727,3583812-3584025,3584145-3584251,3584348-3584524,3584752-3584835,3584978-3585130,3585228-3585287,3585382-3585444,3585523-3585585,3585724-3585909,3585982-3586071,3586343-3586505,3586687-3586821,3587072-3587160,3587252-3587392,3587489-3587584,3587702-3587809,3587915-3588310,3588730-3588883,3588983-3589074,3589193-3589271,3589365-3589465,3589553-3589594,3589798-3590043	AT1G10760.3 CDS AT1G10760 ID=AT1G10760.3; Parent=AT1G10760; Name=AT1G10760.3; Note=Pyruvate phosphate dikinase%2C PEP/pyruvate binding domain-containing protein; symbol=SEX1; Alias=GWD, GWD1, SOP, SOP1; full_name=STARCH EXCESS 1; Dbxref=PMID:9715535, PMID:11487701, PMID:12068097, PMID:12472685, PMID:12624767, PMID:14671022, PMID:15618411, PMID:15710607, PMID:15832687, PMID:15894744, PMID:15878986, PMID:15862090, PMID:16055686, PMID:16297066, PMID:17031512, PMID:17083680, PMID:17195036, PMID:17151136, PMID:17397506, PMID:17666166, PMID:18024995, PMID:18650403, PMID:18764922, PMID:19776162, PMID:20546137, PMID:20699404, PMID:18419779, PMID:21546247, PMID:21624897, PMID:21691153, PMID:21636428, PMID:22321580, PMID:22942388, PMID:23393426, PMID:23452177, PMID:23750161, PMID:24697163, PMID:24781197, PMID:24780916, PMID:25349324, locus:2019953; curator_summary=Encodes an %26#945%3B-glucan%2C water dikinase required for starch degradation. Involved in cold-induced freezing tolerance. Mutations that eliminate the GWD protein or affect the dikinase domain of the enzyme dramatically reduce both the amount of phosphate in the amylopectin and the rate of starch degradation. Mature leaves of these mutants accumulate amounts of starch up to seven times greater than those in wild-type leaves. NMR analysis of the mutants%2C suggests that the gene is specifically involved in the phosphorylation of the glucosyl residues of starch at the C6 position.; computational_description=STARCH EXCESS 1 (SEX1)%3B FUNCTIONS IN: protein binding%2C alpha-glucan%2C water dikinase activity%3B INVOLVED IN: cold acclimation%2C response to symbiotic fungus%2C response to trehalose stimulus%2C circadian rhythm%2C starch catabolic process%3B LOCATED IN: mitochondrion%2C chloroplast stroma%2C chloroplast%2C chloroplast envelope%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Pyruvate phosphate dikinase%2C PEP/pyruvate-binding (InterPro:IPR002192)%3B BEST Arabidopsis thaliana protein match is: phosphoglucan%2C water dikinase (TAIR:AT4G24450.1)%3B Has 2623 Blast hits to 2596 proteins in 1116 species: Archae - 196%3B Bacteria - 1989%3B Metazoa - 24%3B Fungi - 8%3B Plants - 221%3B Viruses - 0%3B Other Eukaryotes - 185 (source: NCBI BLink).; locus_type=protein_coding
AT1G10770.1	chr1:003591859	0.0	C/3591859-3592362	AT1G10770.1 CDS AT1G10770 ID=AT1G10770.1; Parent=AT1G10770; Name=AT1G10770.1; Note=Plant invertase/pectin methylesterase inhibitor superfamily protein; curator_summary=Encodes a putative pectin methylesterase/invertase inhibitor. Anti-sense reduction of this gene's transcript results in pollen tube growth retardation and then partial male sterility and reduced seed set.; conf_class=1; computational_description=Plant invertase/pectin methylesterase inhibitor superfamily protein%3B FUNCTIONS IN: enzyme inhibitor activity%2C pectinesterase inhibitor activity%2C pectinesterase activity%3B INVOLVED IN: pollen tube growth%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 13 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%2C C globular stage%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501)%3B BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT1G60760.1)%3B Has 183 Blast hits to 183 proteins in 18 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 183%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14593172, PMID:18775970, PMID:20229192, PMID:23517122, locus:2019968; locus_type=protein_coding
AT1G10780.1	chr1:003592875	0.0	C/3592875-3593111,3593202-3593479,3593569-3594310	AT1G10780.1 CDS AT1G10780 ID=AT1G10780.1; Parent=AT1G10780; Name=AT1G10780.1; Note=F-box/RNI-like superfamily protein; conf_class=1; computational_description=F-box/RNI-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%3B BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT1G67190.2)%3B Has 253 Blast hits to 253 proteins in 17 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1%3B Fungi - 0%3B Plants - 251%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:18775970, locus:2019978; locus_type=protein_coding
AT1G10780.2	chr1:003592875	0.0	C/3592875-3593111,3593202-3593479,3593569-3594328	AT1G10780.2 CDS AT1G10780 ID=AT1G10780.2; Parent=AT1G10780; Name=AT1G10780.2; Note=F-box/RNI-like superfamily protein; computational_description=F-box/RNI-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%3B BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT1G67190.2)%3B Has 253 Blast hits to 253 proteins in 17 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1%3B Fungi - 0%3B Plants - 251%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; Dbxref=PMID:18775970, locus:2019978; locus_type=protein_coding
AT1G10790.1	chr1:003596360	0.0	W/3596360-3596603,3596990-3597102,3597194-3597847	AT1G10790.1 CDS AT1G10790 ID=AT1G10790.1; Parent=AT1G10790; Name=AT1G10790.1; Note=hydroxyproline-rich glycoprotein family protein; conf_class=4; computational_description=BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT3G56590.2)%3B Has 78 Blast hits to 78 proteins in 11 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 78%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:20736450, locus:2019988; locus_type=protein_coding
AT1G10800.1	chr1:003598158	0.0	C/3598158-3598514	AT1G10800.1 CDS AT1G10800 ID=AT1G10800.1; Parent=AT1G10800; Name=AT1G10800.1; Note=voltage-gated hydrogen channel-like protein; conf_class=9; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: inflorescence meristem%2C hypocotyl%2C root%2C flower%3B EXPRESSED DURING: petal differentiation and expansion stage%3B Has 23 Blast hits to 23 proteins in 9 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 22%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; conf_rating=*; Dbxref=PMID:20736450, locus:2019998; locus_type=protein_coding
AT1G10800.2	chr1:003598158	0.0	C/3598158-3598868	AT1G10800.2 CDS AT1G10800 ID=AT1G10800.2; Parent=AT1G10800; Name=AT1G10800.2; Note=voltage-gated hydrogen channel-like protein; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: inflorescence meristem%2C hypocotyl%2C root%2C flower%3B EXPRESSED DURING: petal differentiation and expansion stage%3B Has 23 Blast hits to 23 proteins in 9 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 22%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; Dbxref=PMID:20736450, locus:2019998; locus_type=protein_coding
AT1G10810.1	chr1:003599369	0.0	W/3599369-3599590,3599677-3599877,3599962-3600134,3600224-3600326,3600422-3600757	AT1G10810.1 CDS AT1G10810 ID=AT1G10810.1; Parent=AT1G10810; Name=AT1G10810.1; Note=NAD(P)-linked oxidoreductase superfamily protein; conf_class=1; computational_description=NAD(P)-linked oxidoreductase superfamily protein%3B FUNCTIONS IN: oxidoreductase activity%2C aldo-keto reductase activity%3B INVOLVED IN: oxidation reduction%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: root%3B CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395)%3B BEST Arabidopsis thaliana protein match is: NAD(P)-linked oxidoreductase superfamily protein (TAIR:AT1G60730.1)%3B Has 29108 Blast hits to 29087 proteins in 2572 species: Archae - 640%3B Bacteria - 19713%3B Metazoa - 1440%3B Fungi - 2153%3B Plants - 1216%3B Viruses - 0%3B Other Eukaryotes - 3946 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:20736450, locus:2196446; locus_type=protein_coding
AT1G10810.2	chr1:003599369	0.0	W/3599369-3599590,3599677-3599877,3599962-3600134,3600224-3600395	AT1G10810.2 CDS AT1G10810 ID=AT1G10810.2; Parent=AT1G10810; Name=AT1G10810.2; Note=NAD(P)-linked oxidoreductase superfamily protein; computational_description=NAD(P)-linked oxidoreductase superfamily protein%3B FUNCTIONS IN: oxidoreductase activity%2C aldo-keto reductase activity%3B INVOLVED IN: oxidation reduction%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: root%3B CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395)%3B BEST Arabidopsis thaliana protein match is: NAD(P)-linked oxidoreductase superfamily protein (TAIR:AT1G60730.1)%3B Has 29108 Blast hits to 29087 proteins in 2572 species: Archae - 640%3B Bacteria - 19713%3B Metazoa - 1440%3B Fungi - 2153%3B Plants - 1216%3B Viruses - 0%3B Other Eukaryotes - 3946 (source: NCBI BLink).; Dbxref=PMID:20736450, locus:2196446; locus_type=protein_coding
AT1G10810.3	chr1:003599611	0.0	W/3599611-3599877,3599962-3600134,3600224-3600326,3600422-3600757	AT1G10810.3 CDS AT1G10810 ID=AT1G10810.3; Parent=AT1G10810; Name=AT1G10810.3; Note=NAD(P)-linked oxidoreductase superfamily protein; computational_description=NAD(P)-linked oxidoreductase superfamily protein%3B FUNCTIONS IN: oxidoreductase activity%2C aldo-keto reductase activity%3B INVOLVED IN: oxidation reduction%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: root%3B CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395)%3B BEST Arabidopsis thaliana protein match is: NAD(P)-linked oxidoreductase superfamily protein (TAIR:AT1G60730.1)%3B Has 29108 Blast hits to 29087 proteins in 2572 species: Archae - 640%3B Bacteria - 19713%3B Metazoa - 1440%3B Fungi - 2153%3B Plants - 1216%3B Viruses - 0%3B Other Eukaryotes - 3946 (source: NCBI BLink).; Dbxref=PMID:20736450, locus:2196446; locus_type=protein_coding
AT1G10820.1	chr1:003601437	0.0	C/3601437-3601493,3601713-3601809,3601916-3601977,3602168-3602250,3602354-3602459,3602999-3603055,3603922-3604021,3604436-3604541,3604620-3604650	AT1G10820.1 CDS AT1G10820 ID=AT1G10820.1; Parent=AT1G10820; Name=AT1G10820.1; Note=hypothetical protein (DUF3755); conf_class=2; computational_description=Protein of unknown function (DUF3755)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3755 (InterPro:IPR022228)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3755) (TAIR:AT1G60670.2)%3B Has 155 Blast hits to 155 proteins in 22 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 148%3B Viruses - 0%3B Other Eukaryotes - 7 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:20736450, locus:2196480; locus_type=protein_coding
AT1G10820.2	chr1:003601437	0.0	C/3601437-3601493,3601713-3601809,3601916-3601977,3602168-3602250,3602354-3602459,3602999-3603055,3603922-3604021,3604436-3604650	AT1G10820.2 CDS AT1G10820 ID=AT1G10820.2; Parent=AT1G10820; Name=AT1G10820.2; Note=hypothetical protein (DUF3755); conf_class=2; computational_description=Protein of unknown function (DUF3755)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3755 (InterPro:IPR022228)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3755) (TAIR:AT1G60670.2)%3B Has 155 Blast hits to 155 proteins in 22 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 148%3B Viruses - 0%3B Other Eukaryotes - 7 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:20736450, locus:2196480; locus_type=protein_coding
AT1TE11730	chr1:003605062	0.0	C/3605062-3605139	AT1TE11730 transposable_element AT1TE11730 ID=AT1TE11730; Name=AT1TE11730; Alias=ATHILA8B
AT1G10830.1	chr1:003605736	0.0	C/3605736-3606071,3606501-3606710,3606815-3606961,3607039-3607449	AT1G10830.1 CDS AT1G10830 ID=AT1G10830.1; Parent=AT1G10830; Name=AT1G10830.1; Note=15-cis-zeta-carotene isomerase; curator_summary=Encodes a functional 15-cis-zeta-carotene isomerase (Z-ISO).; conf_class=2; symbol=Z-ISO; Alias=Z-ISO1.1, Z-ISO1.2; full_name=15-cis-zeta-carotene isomerase; computational_description=15-cis-zeta-carotene isomerase (Z-ISO)%3B FUNCTIONS IN: 9%2C15%2C9'-tri-cis-zeta-carotene isomerase activity%3B INVOLVED IN: carotene biosynthetic process%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: NnrU (InterPro:IPR009915)%3B Has 373 Blast hits to 373 proteins in 102 species: Archae - 0%3B Bacteria - 164%3B Metazoa - 0%3B Fungi - 0%3B Plants - 33%3B Viruses - 0%3B Other Eukaryotes - 176 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:20335404, PMID:20736450, locus:2196475; locus_type=protein_coding
AT1G10830.2	chr1:003606411	0.0	C/3606411-3606710,3606815-3606961,3607039-3607449	AT1G10830.2 CDS AT1G10830 ID=AT1G10830.2; Parent=AT1G10830; Name=AT1G10830.2; Note=15-cis-zeta-carotene isomerase; curator_summary=Encodes a functional 15-cis-zeta-carotene isomerase (Z-ISO).; conf_class=2; symbol=Z-ISO; Alias=Z-ISO1.1, Z-ISO1.2; full_name=15-cis-zeta-carotene isomerase; computational_description=15-cis-zeta-carotene isomerase (Z-ISO)%3B FUNCTIONS IN: 9%2C15%2C9'-tri-cis-zeta-carotene isomerase activity%3B INVOLVED IN: carotene biosynthetic process%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: NnrU (InterPro:IPR009915)%3B Has 373 Blast hits to 373 proteins in 102 species: Archae - 0%3B Bacteria - 164%3B Metazoa - 0%3B Fungi - 0%3B Plants - 33%3B Viruses - 0%3B Other Eukaryotes - 176 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:20335404, PMID:20736450, locus:2196475; locus_type=protein_coding
AT1G10830.3	chr1:003606698	0.0	C/3606698-3606961,3607039-3607449	AT1G10830.3 CDS AT1G10830 ID=AT1G10830.3; Parent=AT1G10830; Name=AT1G10830.3; Note=15-cis-zeta-carotene isomerase; symbol=Z-ISO; Alias=Z-ISO1.1, Z-ISO1.2; full_name=15-cis-zeta-carotene isomerase; curator_summary=Encodes a functional 15-cis-zeta-carotene isomerase (Z-ISO).; computational_description=15-cis-zeta-carotene isomerase (Z-ISO)%3B FUNCTIONS IN: 9%2C15%2C9'-tri-cis-zeta-carotene isomerase activity%3B INVOLVED IN: carotene biosynthetic process%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: NnrU (InterPro:IPR009915)%3B Has 373 Blast hits to 373 proteins in 102 species: Archae - 0%3B Bacteria - 164%3B Metazoa - 0%3B Fungi - 0%3B Plants - 33%3B Viruses - 0%3B Other Eukaryotes - 176 (source: NCBI BLink).; Dbxref=PMID:14576160, PMID:20335404, PMID:20736450, locus:2196475; locus_type=protein_coding
AT1G10840.1	chr1:003607885	0.0	C/3607885-3607942,3608023-3608175,3608361-3608428,3608514-3608615,3608706-3608777,3608914-3608962,3609048-3609181,3609455-3609521,3609608-3609711,3609811-3609927,3610094-3610173,3610290-3610299	AT1G10840.1 CDS AT1G10840 ID=AT1G10840.1; Parent=AT1G10840; Name=AT1G10840.1; Note=translation initiation factor 3 subunit H1; curator_summary=Encodes eukaryotic initiation factor 3H1 subunit (TIF3H1).; conf_class=2; symbol=TIF3H1; full_name=translation initiation factor 3 subunit H1; computational_description=translation initiation factor 3 subunit H1 (TIF3H1)%3B CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555)%3B Has 1300 Blast hits to 1299 proteins in 247 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 532%3B Fungi - 366%3B Plants - 231%3B Viruses - 0%3B Other Eukaryotes - 171 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11042177, PMID:15548739, PMID:18230180, PMID:18315867, PMID:20736450, locus:2196469; locus_type=protein_coding
AT1G10840.2	chr1:003607885	0.0	C/3607885-3607942,3608023-3608175,3608361-3608428,3608514-3608615,3608706-3608777,3608914-3608962,3609048-3609181,3609455-3609521,3609608-3609657	AT1G10840.2 CDS AT1G10840 ID=AT1G10840.2; Parent=AT1G10840; Name=AT1G10840.2; Note=translation initiation factor 3 subunit H1; curator_summary=Encodes eukaryotic initiation factor 3H1 subunit (TIF3H1).; conf_class=2; symbol=TIF3H1; full_name=translation initiation factor 3 subunit H1; computational_description=translation initiation factor 3 subunit H1 (TIF3H1)%3B CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555)%3B Has 1300 Blast hits to 1299 proteins in 247 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 532%3B Fungi - 366%3B Plants - 231%3B Viruses - 0%3B Other Eukaryotes - 171 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11042177, PMID:15548739, PMID:18230180, PMID:18315867, PMID:20736450, locus:2196469; locus_type=protein_coding
AT1G04823.1	chr1:003611490	0.0	C/3611490-3612255	AT1G04823.1 antisense_lncRNA AT1G04823 ID=AT1G04823.1; Parent=AT1G04823; Name=AT1G04823.1; description=Natural antisense transcript overlaps with AT1G10850; Note=Natural antisense transcript overlaps with AT1G10850; locus_type=antisense_long_noncoding_rna
AT1G10850.1	chr1:003612228	0.0	W/3612228-3613557,3613682-3614343	AT1G10850.1 CDS AT1G10850 ID=AT1G10850.1; Parent=AT1G10850; Name=AT1G10850.1; Note=Leucine-rich repeat protein kinase family protein; conf_class=2; computational_description=Leucine-rich repeat protein kinase family protein%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C ATP binding%3B INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway%2C protein amino acid phosphorylation%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Leucine-rich repeat-containing N-terminal domain%2C type 2 (InterPro:IPR013210)%2C Leucine-rich repeat (InterPro:IPR001611)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%3B BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT1G60630.1)%3B Has 141918 Blast hits to 107530 proteins in 3087 species: Archae - 92%3B Bacteria - 12469%3B Metazoa - 36374%3B Fungi - 8455%3B Plants - 68016%3B Viruses - 276%3B Other Eukaryotes - 16236 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:16920880, PMID:18650403, PMID:18757557, locus:2196464; locus_type=protein_coding
AT1G10865.1	chr1:003614789	0.0	C/3614789-3614830,3615037-3615141,3615240-3615308	AT1G10865.1 CDS AT1G10865 ID=AT1G10865.1; Parent=AT1G10865; Name=AT1G10865.1; Note=cytochrome C oxidase assembly factor; conf_class=1; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase assembly protein PET191%2C N-terminal (InterPro:IPR018793)%3B Has 241 Blast hits to 241 proteins in 124 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 100%3B Fungi - 94%3B Plants - 38%3B Viruses - 0%3B Other Eukaryotes - 9 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:4010713430; locus_type=protein_coding
AT1G10865.2	chr1:003614821	0.0	C/3614821-3614826,3615037-3615141,3615240-3615308	AT1G10865.2 CDS AT1G10865 ID=AT1G10865.2; Parent=AT1G10865; Name=AT1G10865.2; Note=cytochrome C oxidase assembly factor; conf_class=2; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase assembly protein PET191%2C N-terminal (InterPro:IPR018793)%3B Has 241 Blast hits to 241 proteins in 124 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 100%3B Fungi - 94%3B Plants - 38%3B Viruses - 0%3B Other Eukaryotes - 9 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:4010713430; locus_type=protein_coding
AT1G04827.1	chr1:003615292	0.0	W/3615292-3616091	AT1G04827.1 antisense_lncRNA AT1G04827 ID=AT1G04827.1; Parent=AT1G04827; Name=AT1G04827.1; description=Natural antisense transcript overlaps with AT1G10865; Note=Natural antisense transcript overlaps with AT1G10865; locus_type=antisense_long_noncoding_rna
AT1G10870.1	chr1:003616905	0.0	C/3616905-3617019,3617226-3617671,3617839-3617929,3618077-3618198,3618526-3618786,3618873-3618959,3619189-3619404,3619911-3620036,3620358-3620564,3621001-3621042,3621147-3621242,3621332-3621379,3621751-3621816,3622003-3622047,3622400-3622462,3622763-3622833,3622920-3623020,3623362-3623438,3623565-3623612	AT1G10870.1 CDS AT1G10870 ID=AT1G10870.1; Parent=AT1G10870; Name=AT1G10870.1; Note=ARF-GAP domain 4; curator_summary=A member of ARF GAP domain (AGD)%2C A thaliana has 15 members%2C grouped into four classes. AGD4 belongs to the Class 1%2C together with AGD1%2C AGD2%2C and AGD3.; conf_class=2; symbol=AGD4; full_name=ARF-GAP domain 4; computational_description=ARF-GAP domain 4 (AGD4)%3B FUNCTIONS IN: ARF GTPase activator activity%2C zinc ion binding%3B INVOLVED IN: regulation of ARF GTPase activity%3B LOCATED IN: cytoplasm%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164)%2C Pleckstrin homology-type (InterPro:IPR011993)%2C Ankyrin repeat-containing domain (InterPro:IPR020683)%2C BAR (InterPro:IPR004148)%2C Pleckstrin homology (InterPro:IPR001849)%2C Ankyrin repeat (InterPro:IPR002110)%3B BEST Arabidopsis thaliana protein match is: ARF-GAP domain 2 (TAIR:AT1G60860.1)%3B Has 23403 Blast hits to 15248 proteins in 655 species: Archae - 77%3B Bacteria - 1735%3B Metazoa - 12296%3B Fungi - 2244%3B Plants - 1395%3B Viruses - 252%3B Other Eukaryotes - 5404 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12644670, PMID:15358268, PMID:15743878, PMID:15918887, PMID:16698946, PMID:20736450, locus:2197359; locus_type=protein_coding
AT1G10870.2	chr1:003616905	0.0	C/3616905-3617019,3617226-3617671,3617839-3617944,3618077-3618198,3618526-3618786,3618873-3618959,3619189-3619404,3619911-3620036,3620358-3620564,3621001-3621042,3621147-3621242,3621332-3621379,3621751-3621816,3622003-3622047,3622400-3622462,3622763-3622833,3622920-3623020,3623362-3623438,3623565-3623612	AT1G10870.2 CDS AT1G10870 ID=AT1G10870.2; Parent=AT1G10870; Name=AT1G10870.2; Note=ARF-GAP domain 4; symbol=AGD4; full_name=ARF-GAP domain 4; curator_summary=A member of ARF GAP domain (AGD)%2C A thaliana has 15 members%2C grouped into four classes. AGD4 belongs to the Class 1%2C together with AGD1%2C AGD2%2C and AGD3.; computational_description=ARF-GAP domain 4 (AGD4)%3B FUNCTIONS IN: ARF GTPase activator activity%2C zinc ion binding%3B INVOLVED IN: regulation of ARF GTPase activity%3B LOCATED IN: cytoplasm%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164)%2C Pleckstrin homology-type (InterPro:IPR011993)%2C Ankyrin repeat-containing domain (InterPro:IPR020683)%2C BAR (InterPro:IPR004148)%2C Pleckstrin homology (InterPro:IPR001849)%2C Ankyrin repeat (InterPro:IPR002110)%3B BEST Arabidopsis thaliana protein match is: ARF-GAP domain 2 (TAIR:AT1G60860.1)%3B Has 23403 Blast hits to 15248 proteins in 655 species: Archae - 77%3B Bacteria - 1735%3B Metazoa - 12296%3B Fungi - 2244%3B Plants - 1395%3B Viruses - 252%3B Other Eukaryotes - 5404 (source: NCBI BLink).; Dbxref=PMID:12644670, PMID:15358268, PMID:15743878, PMID:15918887, PMID:16698946, PMID:20736450, locus:2197359; locus_type=protein_coding
AT1G10875.1	chr1:003624035	0.0	C/3624035-3624253,3624334-3624528,3624651-3624776,3624877-3625068,3625169-3625345	AT1G10875.1 CDS AT1G10875 ID=AT1G10875.1; Parent=AT1G10875; Name=AT1G10875.1; Note=core-2/I-branching beta-1%2C6-N-acetylglucosaminyltransferase family protein; locus_type=protein_coding
AT1G10880.1	chr1:003625742	0.0	C/3625742-3626380,3626500-3627021	AT1G10880.1 CDS AT1G10880 ID=AT1G10880.1; Parent=AT1G10880; Name=AT1G10880.1; Note=core-2/I-branching beta-1%2C6-n-acetylglucosaminyltransferase family protein; curator_summary=Putative role in response to salt stress. Mutants grow larger than the wild type under salt stress condition (Ann Stapleton and Ashley Green%2C 2009%2C personal communication).; conf_class=6; computational_description=Core-2/I-branching beta-1%2C6-N-acetylglucosaminyltransferase family protein%3B INVOLVED IN: response to salt stress%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: cultured cell%3B CONTAINS InterPro DOMAIN/s: Core-2/I-Branching enzyme (InterPro:IPR021141)%3B BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1%2C6-N-acetylglucosaminyltransferase family protein (TAIR:AT5G16170.1)%3B Has 696 Blast hits to 692 proteins in 56 species: Archae - 2%3B Bacteria - 7%3B Metazoa - 8%3B Fungi - 7%3B Plants - 576%3B Viruses - 0%3B Other Eukaryotes - 96 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:16510518, locus:2197354; locus_type=protein_coding
AT1G10890.1	chr1:003628081	0.0	W/3628081-3628229,3629098-3629304,3629845-3630064,3630255-3630545	AT1G10890.1 CDS AT1G10890 ID=AT1G10890.1; Parent=AT1G10890; Name=AT1G10890.1; Note=arginine/glutamate-rich 1 protein; conf_class=3; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: petal%2C flower%2C leaf%3B EXPRESSED DURING: LP.04 four leaves visible%2C 4 anthesis%2C petal differentiation and expansion stage%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13340.1)%3B Has 11769 Blast hits to 8435 proteins in 698 species: Archae - 22%3B Bacteria - 971%3B Metazoa - 5937%3B Fungi - 1065%3B Plants - 592%3B Viruses - 101%3B Other Eukaryotes - 3081 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, locus:2197464; locus_type=protein_coding
AT1G10890.4	chr1:003628081	0.0	W/3628081-3628229,3629098-3629304,3629845-3630064,3630279-3630545	AT1G10890.4 CDS AT1G10890 ID=AT1G10890.4; Parent=AT1G10890; Name=AT1G10890.4; Note=arginine/glutamate-rich 1 protein; Dbxref=PMID:14576160, locus:2197464; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: petal%2C flower%2C leaf%3B EXPRESSED DURING: LP.04 four leaves visible%2C 4 anthesis%2C petal differentiation and expansion stage%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13340.1)%3B Has 11769 Blast hits to 8435 proteins in 698 species: Archae - 22%3B Bacteria - 971%3B Metazoa - 5937%3B Fungi - 1065%3B Plants - 592%3B Viruses - 101%3B Other Eukaryotes - 3081 (source: NCBI BLink).; locus_type=protein_coding
AT1G10890.3	chr1:003628968	0.0	W/3628968-3628972,3629098-3629304,3629845-3630064,3630255-3630545	AT1G10890.3 CDS AT1G10890 ID=AT1G10890.3; Parent=AT1G10890; Name=AT1G10890.3; Note=arginine/glutamate-rich 1 protein; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: petal%2C flower%2C leaf%3B EXPRESSED DURING: LP.04 four leaves visible%2C 4 anthesis%2C petal differentiation and expansion stage%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13340.1)%3B Has 11769 Blast hits to 8435 proteins in 698 species: Archae - 22%3B Bacteria - 971%3B Metazoa - 5937%3B Fungi - 1065%3B Plants - 592%3B Viruses - 101%3B Other Eukaryotes - 3081 (source: NCBI BLink).; Dbxref=PMID:14576160, locus:2197464; locus_type=protein_coding
AT1G10890.2	chr1:003629090	0.0	W/3629090-3629304,3629845-3630064,3630255-3630545	AT1G10890.2 CDS AT1G10890 ID=AT1G10890.2; Parent=AT1G10890; Name=AT1G10890.2; Note=arginine/glutamate-rich 1 protein; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: petal%2C flower%2C leaf%3B EXPRESSED DURING: LP.04 four leaves visible%2C 4 anthesis%2C petal differentiation and expansion stage%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13340.1)%3B Has 11769 Blast hits to 8435 proteins in 698 species: Archae - 22%3B Bacteria - 971%3B Metazoa - 5937%3B Fungi - 1065%3B Plants - 592%3B Viruses - 101%3B Other Eukaryotes - 3081 (source: NCBI BLink).; Dbxref=PMID:14576160, locus:2197464; locus_type=protein_coding
AT1TE11810	chr1:003630277	0.0	C/3630277-3630404	AT1TE11810 transposable_element AT1TE11810 ID=AT1TE11810; Name=AT1TE11810; Alias=ATDNAI27T9A
AT1G10900.1	chr1:003632396	0.0	C/3632396-3632675,3632754-3632919,3633135-3633289,3633502-3633689,3633775-3633885,3634092-3634257,3634798-3634965,3635302-3636321,3636406-3636416	AT1G10900.1 CDS AT1G10900 ID=AT1G10900.1; Parent=AT1G10900; Name=AT1G10900.1; Note=Phosphatidylinositol-4-phosphate 5-kinase family protein; conf_class=2; computational_description=Phosphatidylinositol-4-phosphate 5-kinase family protein%3B FUNCTIONS IN: 1-phosphatidylinositol-4-phosphate 5-kinase activity%2C phosphatidylinositol phosphate kinase activity%2C ATP binding%3B INVOLVED IN: phosphatidylinositol metabolic process%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Phosphatidylinositol-4-phosphate 5-kinase%2C core%2C subgroup (InterPro:IPR016034)%2C Phosphatidylinositol-4-phosphate 5-kinase%2C plant (InterPro:IPR017163)%2C MORN motif (InterPro:IPR003409)%2C Phosphatidylinositol-4-phosphate 5-kinase%2C core (InterPro:IPR002498)%3B BEST Arabidopsis thaliana protein match is: Phosphatidylinositol-4-phosphate 5-kinase family protein (TAIR:AT1G60890.1)%3B Has 26222 Blast hits to 7747 proteins in 608 species: Archae - 0%3B Bacteria - 3917%3B Metazoa - 3982%3B Fungi - 423%3B Plants - 1715%3B Viruses - 0%3B Other Eukaryotes - 16185 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12226484, PMID:16951057, PMID:18178770, PMID:18493073, PMID:18545707, PMID:20736450, PMID:23505340, locus:2197454; locus_type=protein_coding
AT1G10900.2	chr1:003632396	0.0	C/3632396-3632675,3632754-3632919,3633135-3633289,3633502-3633689,3633775-3633885,3634092-3634257,3634798-3634965,3635302-3636321,3636406-3636416	AT1G10900.2 CDS AT1G10900 ID=AT1G10900.2; Parent=AT1G10900; Name=AT1G10900.2; Note=Phosphatidylinositol-4-phosphate 5-kinase family protein; Dbxref=PMID:12226484, PMID:16951057, PMID:18178770, PMID:18493073, PMID:18545707, PMID:20736450, PMID:23505340, locus:2197454; computational_description=Phosphatidylinositol-4-phosphate 5-kinase family protein%3B FUNCTIONS IN: 1-phosphatidylinositol-4-phosphate 5-kinase activity%2C phosphatidylinositol phosphate kinase activity%2C ATP binding%3B INVOLVED IN: phosphatidylinositol metabolic process%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Phosphatidylinositol-4-phosphate 5-kinase%2C core%2C subgroup (InterPro:IPR016034)%2C Phosphatidylinositol-4-phosphate 5-kinase%2C plant (InterPro:IPR017163)%2C MORN motif (InterPro:IPR003409)%2C Phosphatidylinositol-4-phosphate 5-kinase%2C core (InterPro:IPR002498)%3B BEST Arabidopsis thaliana protein match is: Phosphatidylinositol-4-phosphate 5-kinase family protein (TAIR:AT1G60890.1)%3B Has 26222 Blast hits to 7747 proteins in 608 species: Archae - 0%3B Bacteria - 3917%3B Metazoa - 3982%3B Fungi - 423%3B Plants - 1715%3B Viruses - 0%3B Other Eukaryotes - 16185 (source: NCBI BLink).; locus_type=protein_coding
AT1G10900.3	chr1:003632396	0.0	C/3632396-3632675,3632754-3632919,3633135-3633289,3633502-3633689,3633775-3633885,3634092-3634257,3634798-3634965,3635302-3636321,3636406-3636416	AT1G10900.3 CDS AT1G10900 ID=AT1G10900.3; Parent=AT1G10900; Name=AT1G10900.3; Note=Phosphatidylinositol-4-phosphate 5-kinase family protein; Dbxref=PMID:12226484, PMID:16951057, PMID:18178770, PMID:18493073, PMID:18545707, PMID:20736450, PMID:23505340, locus:2197454; computational_description=Phosphatidylinositol-4-phosphate 5-kinase family protein%3B FUNCTIONS IN: 1-phosphatidylinositol-4-phosphate 5-kinase activity%2C phosphatidylinositol phosphate kinase activity%2C ATP binding%3B INVOLVED IN: phosphatidylinositol metabolic process%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Phosphatidylinositol-4-phosphate 5-kinase%2C core%2C subgroup (InterPro:IPR016034)%2C Phosphatidylinositol-4-phosphate 5-kinase%2C plant (InterPro:IPR017163)%2C MORN motif (InterPro:IPR003409)%2C Phosphatidylinositol-4-phosphate 5-kinase%2C core (InterPro:IPR002498)%3B BEST Arabidopsis thaliana protein match is: Phosphatidylinositol-4-phosphate 5-kinase family protein (TAIR:AT1G60890.1)%3B Has 26222 Blast hits to 7747 proteins in 608 species: Archae - 0%3B Bacteria - 3917%3B Metazoa - 3982%3B Fungi - 423%3B Plants - 1715%3B Viruses - 0%3B Other Eukaryotes - 16185 (source: NCBI BLink).; locus_type=protein_coding
AT1G10910.1	chr1:003639908	0.0	W/3639908-3640179,3640547-3640631,3640743-3641003,3641241-3641543,3642079-3642183,3642380-3642479,3642785-3643104,3643196-3643372,3643454-3643582,3643732-3643974	AT1G10910.1 CDS AT1G10910 ID=AT1G10910.1; Parent=AT1G10910; Name=AT1G10910.1; Note=Pentatricopeptide repeat (PPR) superfamily protein; conf_class=1; symbol=EMB3103; full_name=EMBRYO DEFECTIVE 3103; computational_description=Pentatricopeptide repeat (PPR) superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: plastid transcriptionally active 2 (TAIR:AT1G74850.1)%3B Has 41177 Blast hits to 13618 proteins in 293 species: Archae - 1%3B Bacteria - 42%3B Metazoa - 324%3B Fungi - 460%3B Plants - 39061%3B Viruses - 0%3B Other Eukaryotes - 1289 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14576160, PMID:18650403, PMID:20736450, locus:2197424; locus_type=protein_coding
AT1G10910.2	chr1:003639908	0.0	W/3639908-3640179,3640547-3640631,3640743-3641003,3641241-3641543,3642079-3642183,3642380-3642479,3642785-3643104,3643196-3643372,3643454-3643609	AT1G10910.2 CDS AT1G10910 ID=AT1G10910.2; Parent=AT1G10910; Name=AT1G10910.2; Note=Pentatricopeptide repeat (PPR) superfamily protein; symbol=EMB3103; full_name=EMBRYO DEFECTIVE 3103; computational_description=Pentatricopeptide repeat (PPR) superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: plastid transcriptionally active 2 (TAIR:AT1G74850.1)%3B Has 41177 Blast hits to 13618 proteins in 293 species: Archae - 1%3B Bacteria - 42%3B Metazoa - 324%3B Fungi - 460%3B Plants - 39061%3B Viruses - 0%3B Other Eukaryotes - 1289 (source: NCBI BLink).; Dbxref=PMID:14576160, PMID:18650403, PMID:20736450, locus:2197424; locus_type=protein_coding
AT1G10920.1	chr1:003644587	0.0	C/3644587-3646109,3646194-3646352,3646503-3647004	AT1G10920.1 CDS AT1G10920 ID=AT1G10920.1; Parent=AT1G10920; Name=AT1G10920.1; Note=NB-ARC domain-containing disease resistance protein; curator_summary=Encodes LOV1%2C a disease susceptibility gene that%2C paradoxically%2C is a member of the NBS-LRR resistance gene family. Conditions susceptibility to the fungus Cochliobolus victoriae and victorin-dependent induction of defense-associated proteins. Saturation mutagenesis identified 59 lov mutations that all display reduced susceptibility to vitorin. Mutations in known defense response pathways do not prevent susceptibility to C. victoriae.; conf_class=4; symbol=LOV1; full_name=LOCUS ORCHESTRATING VICTORIN EFFECTS1; computational_description=LOV1%3B FUNCTIONS IN: ATP binding%3B INVOLVED IN: defense response to fungus%2C response to molecule of fungal origin%2C defense response%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 14 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182)%2C Disease resistance protein (InterPro:IPR000767)%3B BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G48620.1)%3B Has 17113 Blast hits to 15625 proteins in 596 species: Archae - 16%3B Bacteria - 1275%3B Metazoa - 1625%3B Fungi - 139%3B Plants - 13787%3B Viruses - 0%3B Other Eukaryotes - 271 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:17804803, PMID:18052878, PMID:19166850, PMID:19601589, PMID:19783648, PMID:20736450, PMID:23087001, PMID:23634836, locus:2197409; locus_type=protein_coding
AT1G10920.2	chr1:003644587	0.0	C/3644587-3646109,3646194-3646352,3646503-3647004	AT1G10920.2 CDS AT1G10920 ID=AT1G10920.2; Parent=AT1G10920; Name=AT1G10920.2; Note=NB-ARC domain-containing disease resistance protein; curator_summary=Encodes LOV1%2C a disease susceptibility gene that%2C paradoxically%2C is a member of the NBS-LRR resistance gene family. Conditions susceptibility to the fungus Cochliobolus victoriae and victorin-dependent induction of defense-associated proteins. Saturation mutagenesis identified 59 lov mutations that all display reduced susceptibility to vitorin. Mutations in known defense response pathways do not prevent susceptibility to C. victoriae.; conf_class=4; symbol=LOV1; full_name=LOCUS ORCHESTRATING VICTORIN EFFECTS1; computational_description=LOV1%3B FUNCTIONS IN: ATP binding%3B INVOLVED IN: defense response to fungus%2C response to molecule of fungal origin%2C defense response%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 14 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182)%2C Disease resistance protein (InterPro:IPR000767)%3B BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G48620.1)%3B Has 17113 Blast hits to 15625 proteins in 596 species: Archae - 16%3B Bacteria - 1275%3B Metazoa - 1625%3B Fungi - 139%3B Plants - 13787%3B Viruses - 0%3B Other Eukaryotes - 271 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:17804803, PMID:18052878, PMID:19166850, PMID:19601589, PMID:19783648, PMID:20736450, PMID:23087001, PMID:23634836, locus:2197409; locus_type=protein_coding
AT1G10920.3	chr1:003644587	0.0	C/3644587-3646109,3646194-3646344	AT1G10920.3 CDS AT1G10920 ID=AT1G10920.3; Parent=AT1G10920; Name=AT1G10920.3; Note=NB-ARC domain-containing disease resistance protein; symbol=LOV1; full_name=LOCUS ORCHESTRATING VICTORIN EFFECTS1; curator_summary=Encodes LOV1%2C a disease susceptibility gene that%2C paradoxically%2C is a member of the NBS-LRR resistance gene family. Conditions susceptibility to the fungus Cochliobolus victoriae and victorin-dependent induction of defense-associated proteins. Saturation mutagenesis identified 59 lov mutations that all display reduced susceptibility to vitorin. Mutations in known defense response pathways do not prevent susceptibility to C. victoriae.; computational_description=LOV1%3B FUNCTIONS IN: ATP binding%3B INVOLVED IN: defense response to fungus%2C response to molecule of fungal origin%2C defense response%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 14 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182)%2C Disease resistance protein (InterPro:IPR000767)%3B BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G48620.1)%3B Has 17113 Blast hits to 15625 proteins in 596 species: Archae - 16%3B Bacteria - 1275%3B Metazoa - 1625%3B Fungi - 139%3B Plants - 13787%3B Viruses - 0%3B Other Eukaryotes - 271 (source: NCBI BLink).; Dbxref=PMID:17804803, PMID:18052878, PMID:19166850, PMID:19601589, PMID:19783648, PMID:20736450, PMID:23087001, PMID:23634836, locus:2197409; locus_type=protein_coding
AT1G10920.4	chr1:003644587	0.0	C/3644587-3646109,3646194-3646352,3646503-3647004	AT1G10920.4 CDS AT1G10920 ID=AT1G10920.4; Parent=AT1G10920; Name=AT1G10920.4; Note=NB-ARC domain-containing disease resistance protein; symbol=LOV1; full_name=LOCUS ORCHESTRATING VICTORIN EFFECTS1; Dbxref=PMID:17804803, PMID:18052878, PMID:19166850, PMID:19601589, PMID:19783648, PMID:20736450, PMID:23087001, PMID:23634836, locus:2197409; curator_summary=Encodes LOV1%2C a disease susceptibility gene that%2C paradoxically%2C is a member of the NBS-LRR resistance gene family. Conditions susceptibility to the fungus Cochliobolus victoriae and victorin-dependent induction of defense-associated proteins. Saturation mutagenesis identified 59 lov mutations that all display reduced susceptibility to vitorin. Mutations in known defense response pathways do not prevent susceptibility to C. victoriae.; computational_description=LOV1%3B FUNCTIONS IN: ATP binding%3B INVOLVED IN: defense response to fungus%2C response to molecule of fungal origin%2C defense response%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 14 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182)%2C Disease resistance protein (InterPro:IPR000767)%3B BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G48620.1)%3B Has 17113 Blast hits to 15625 proteins in 596 species: Archae - 16%3B Bacteria - 1275%3B Metazoa - 1625%3B Fungi - 139%3B Plants - 13787%3B Viruses - 0%3B Other Eukaryotes - 271 (source: NCBI BLink).; locus_type=protein_coding
AT1G10920.5	chr1:003644587	0.0	C/3644587-3646109,3646194-3646344	AT1G10920.5 CDS AT1G10920 ID=AT1G10920.5; Parent=AT1G10920; Name=AT1G10920.5; Note=NB-ARC domain-containing disease resistance protein; symbol=LOV1; full_name=LOCUS ORCHESTRATING VICTORIN EFFECTS1; curator_summary=Encodes LOV1%2C a disease susceptibility gene that%2C paradoxically%2C is a member of the NBS-LRR resistance gene family. Conditions susceptibility to the fungus Cochliobolus victoriae and victorin-dependent induction of defense-associated proteins. Saturation mutagenesis identified 59 lov mutations that all display reduced susceptibility to vitorin. Mutations in known defense response pathways do not prevent susceptibility to C. victoriae.; computational_description=LOV1%3B FUNCTIONS IN: ATP binding%3B INVOLVED IN: defense response to fungus%2C response to molecule of fungal origin%2C defense response%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 14 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182)%2C Disease resistance protein (InterPro:IPR000767)%3B BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G48620.1)%3B Has 17113 Blast hits to 15625 proteins in 596 species: Archae - 16%3B Bacteria - 1275%3B Metazoa - 1625%3B Fungi - 139%3B Plants - 13787%3B Viruses - 0%3B Other Eukaryotes - 271 (source: NCBI BLink).; Dbxref=PMID:17804803, PMID:18052878, PMID:19166850, PMID:19601589, PMID:19783648, PMID:20736450, PMID:23087001, PMID:23634836, locus:2197409; locus_type=protein_coding
AT1G10930.1	chr1:003648032	0.0	C/3648032-3648371,3648464-3648541,3648642-3648736,3648831-3648957,3649093-3649148,3649259-3649420,3649644-3649724,3649802-3649960,3650040-3650162,3650282-3650350,3650464-3650534,3650605-3650728,3650816-3650951,3651015-3651166,3651261-3651381,3651622-3651749,3651863-3651949,3652104-3652235,3652309-3652675,3652949-3653079,3653168-3653341,3653562-3653975,3654204-3654261,3654718-3654876,3654975-3654997	AT1G10930.1 CDS AT1G10930 ID=AT1G10930.1; Parent=AT1G10930; Name=AT1G10930.1; Note=DNA helicase (RECQl4A); curator_summary=DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination.; conf_class=1; symbol=RECQ4A; computational_description=RECQ4A%3B FUNCTIONS IN: helicase activity%2C ATP-dependent 3'-5' DNA helicase activity%2C ATP-dependent helicase activity%2C nucleic acid binding%2C ATP binding%3B INVOLVED IN: chromosome organization%2C response to DNA damage stimulus%2C double-strand break repair via homologous recombination%3B LOCATED IN: intracellular%3B CONTAINS InterPro DOMAIN/s: DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (InterPro:IPR011545)%2C RQC domain (InterPro:IPR018982)%2C DNA helicase%2C ATP-dependent%2C RecQ type (InterPro:IPR004589)%2C DNA helicase%2C ATP-dependent%2C RecQ type%2C N-terminal (InterPro:IPR018329)%2C DNA/RNA helicase%2C ATP-dependent%2C DEAH-box type%2C conserved site (InterPro:IPR002464)%2C DEAD-like helicase%2C N-terminal (InterPro:IPR014001)%2C DNA/RNA helicase%2C C-terminal (InterPro:IPR001650)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain (InterPro:IPR014021)%2C Helicase/RNase D C-terminal%2C HRDC domain (InterPro:IPR002121)%3B BEST Arabidopsis thaliana protein match is: RECQ helicase L4B (TAIR:AT1G60930.1)%3B Has 34923 Blast hits to 34782 proteins in 2821 species: Archae - 633%3B Bacteria - 21324%3B Metazoa - 3687%3B Fungi - 2728%3B Plants - 1606%3B Viruses - 18%3B Other Eukaryotes - 4927 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15645454, PMID:16146519, PMID:18000056, PMID:18650403, PMID:20971895, PMID:21081662, PMID:21265901, PMID:23586618, PMID:24174542, PMID:24635147, PMID:25585881, locus:2197394; locus_type=protein_coding
AT1G10940.1	chr1:003656050	0.0	C/3656050-3656400,3656484-3656582,3656666-3656770,3656919-3657011,3657092-3657184,3657279-3657332,3657523-3657624,3657739-3657813,3658051-3658170	AT1G10940.1 CDS AT1G10940 ID=AT1G10940.1; Parent=AT1G10940; Name=AT1G10940.1; Note=Protein kinase superfamily protein; curator_summary=Encodes a plant protein kinase similar to the calcium/calmodulin-dependent protein kinase subfamily and the SNF1 kinase subfamily (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. Kinase activity of its homolog in tobacco is induced by hyperosmotic condition within 1 minute.; conf_class=2; symbol=SNRK2.4; Alias=ASK1, ARABIDOPSIS SERINE/THREONINE KINASE 1, SRK2A; full_name=SNF1-related protein kinase 2.4; computational_description=SNF1-related protein kinase 2.4 (SNRK2.4)%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636)%2C Serine/threonine-protein kinase-like%2C plant (InterPro:IPR015740)%3B BEST Arabidopsis thaliana protein match is: SNF1-related protein kinase 2.10 (TAIR:AT1G60940.2)%3B Has 111412 Blast hits to 109617 proteins in 3021 species: Archae - 114%3B Bacteria - 12857%3B Metazoa - 41430%3B Fungi - 12032%3B Plants - 25317%3B Viruses - 521%3B Other Eukaryotes - 19141 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10634915, PMID:9681013, PMID:8393717, PMID:12805596, PMID:14675532, PMID:15292193, PMID:15561775, PMID:17346265, PMID:18433157, PMID:18775970, PMID:19578169, PMID:20733066, PMID:21220313, PMID:21477822, PMID:22738204, PMID:22885934, PMID:23590427, PMID:25422419, locus:2197379; locus_type=protein_coding
AT1G10940.2	chr1:003656050	0.0	C/3656050-3656400,3656484-3656582,3656666-3656770,3656919-3657011,3657092-3657184,3657279-3657332,3657407-3657430,3657523-3657624,3657739-3657813,3658051-3658170	AT1G10940.2 CDS AT1G10940 ID=AT1G10940.2; Parent=AT1G10940; Name=AT1G10940.2; Note=Protein kinase superfamily protein; curator_summary=Encodes a plant protein kinase similar to the calcium/calmodulin-dependent protein kinase subfamily and the SNF1 kinase subfamily (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. Kinase activity of its homolog in tobacco is induced by hyperosmotic condition within 1 minute.; conf_class=6; symbol=SNRK2.4; Alias=ASK1, ARABIDOPSIS SERINE/THREONINE KINASE 1, SRK2A; full_name=SNF1-related protein kinase 2.4; computational_description=SNF1-related protein kinase 2.4 (SNRK2.4)%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636)%2C Serine/threonine-protein kinase-like%2C plant (InterPro:IPR015740)%3B BEST Arabidopsis thaliana protein match is: SNF1-related protein kinase 2.10 (TAIR:AT1G60940.2)%3B Has 111412 Blast hits to 109617 proteins in 3021 species: Archae - 114%3B Bacteria - 12857%3B Metazoa - 41430%3B Fungi - 12032%3B Plants - 25317%3B Viruses - 521%3B Other Eukaryotes - 19141 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:10634915, PMID:9681013, PMID:8393717, PMID:12805596, PMID:14675532, PMID:15292193, PMID:15561775, PMID:17346265, PMID:18433157, PMID:18775970, PMID:19578169, PMID:20733066, PMID:21220313, PMID:21477822, PMID:22738204, PMID:22885934, PMID:23590427, PMID:25422419, locus:2197379; locus_type=protein_coding
AT1G10950.1	chr1:003659322	0.0	W/3659322-3659411,3660325-3660517,3660622-3660726,3661050-3661067,3661162-3661259,3661341-3661493,3661721-3661855,3662005-3662171,3662284-3662378,3662463-3662836,3663197-3663470,3663555-3663622	AT1G10950.1 CDS AT1G10950 ID=AT1G10950.1; Parent=AT1G10950; Name=AT1G10950.1; Note=transmembrane nine 1; curator_summary=Encodes an Arabidopsis Transmembrane nine (TMN) protein. Transmembrane nine (TM9) proteins are localized in the secretory pathway of eukaryotic cells and are involved in cell adhesion and phagocytosis.; conf_class=2; symbol=TMN1; Alias=AtTMN1, EMP12, endomembrane protein 12; full_name=transmembrane nine 1; computational_description=transmembrane nine 1 (TMN1)%3B LOCATED IN: integral to membrane%2C Golgi apparatus%2C membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 16 growth stages%3B CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240)%3B BEST Arabidopsis thaliana protein match is: Endomembrane protein 70 protein family (TAIR:AT5G37310.1)%3B Has 1611 Blast hits to 1538 proteins in 326 species: Archae - 0%3B Bacteria - 16%3B Metazoa - 610%3B Fungi - 273%3B Plants - 454%3B Viruses - 0%3B Other Eukaryotes - 258 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15295017, PMID:16618929, PMID:17432890, PMID:17660356, PMID:19014467, PMID:20736450, PMID:20681974, PMID:22570441, locus:2197364; locus_type=protein_coding
AT1G10960.1	chr1:003664445	0.0	W/3664445-3664891	AT1G10960.1 CDS AT1G10960 ID=AT1G10960.1; Parent=AT1G10960; Name=AT1G10960.1; Note=ferredoxin 1; conf_class=1; symbol=FD1; Alias=ATFD1, ferredoxin 1; full_name=ferredoxin 1; computational_description=ferredoxin 1 (FD1)%3B FUNCTIONS IN: electron carrier activity%2C iron-sulfur cluster binding%2C 2 iron%2C 2 sulfur cluster binding%3B INVOLVED IN: response to karrikin%3B LOCATED IN: chloroplast stroma%2C chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: 2Fe-2S ferredoxin%2C iron-sulphur binding site (InterPro:IPR006058)%2C Ferredoxin (InterPro:IPR001041)%2C Ferredoxin [2Fe-2S]%2C plant (InterPro:IPR010241)%2C Beta-grasp fold%2C ferredoxin-type (InterPro:IPR012675)%3B BEST Arabidopsis thaliana protein match is: 2Fe-2S ferredoxin-like superfamily protein (TAIR:AT1G60950.1)%3B Has 7651 Blast hits to 7649 proteins in 1369 species: Archae - 135%3B Bacteria - 5662%3B Metazoa - 7%3B Fungi - 14%3B Plants - 626%3B Viruses - 5%3B Other Eukaryotes - 1202 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12837951, PMID:14576160, PMID:14684843, PMID:14671017, PMID:15352244, PMID:15998247, PMID:16377748, PMID:16597626, PMID:16927206, PMID:17163439, PMID:17346352, PMID:17337631, PMID:18433503, PMID:18650403, PMID:18753283, PMID:18684332, PMID:20351290, PMID:20966083, PMID:20392519, PMID:21802603, PMID:25527360, locus:2197349; locus_type=protein_coding
AT1G10970.1	chr1:003665201	0.0	C/3665201-3665656,3665858-3666526	AT1G10970.1 CDS AT1G10970 ID=AT1G10970.1; Parent=AT1G10970; Name=AT1G10970.1; Note=zinc transporter; curator_summary=A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root and shoot. Expression is regulated by copper%2C but response to copper deficiency is detected only after three weeks of deficiency.; conf_class=2; symbol=ZIP4; Alias=ATZIP4; full_name=zinc transporter 4 precursor; computational_description=zinc transporter 4 precursor (ZIP4)%3B CONTAINS InterPro DOMAIN/s: Zinc/iron permease%2C fungal/plant (InterPro:IPR004698)%2C Zinc/iron permease (InterPro:IPR003689)%3B BEST Arabidopsis thaliana protein match is: iron regulated transporter 3 (TAIR:AT1G60960.1)%3B Has 2241 Blast hits to 2085 proteins in 351 species: Archae - 0%3B Bacteria - 278%3B Metazoa - 580%3B Fungi - 588%3B Plants - 521%3B Viruses - 0%3B Other Eukaryotes - 274 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9618566, PMID:11500563, PMID:12383089, PMID:13129917, PMID:18631293, PMID:19054361, PMID:20181752, PMID:20479230, PMID:22374397, locus:2197459; locus_type=protein_coding
AT1G10970.2	chr1:003665201	0.0	C/3665201-3665656,3665858-3666526	AT1G10970.2 CDS AT1G10970 ID=AT1G10970.2; Parent=AT1G10970; Name=AT1G10970.2; Note=zinc transporter; symbol=ZIP4; Alias=ATZIP4; full_name=zinc transporter 4 precursor; Dbxref=PMID:9618566, PMID:11500563, PMID:12383089, PMID:13129917, PMID:18631293, PMID:19054361, PMID:20181752, PMID:20479230, PMID:22374397, locus:2197459; curator_summary=A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root and shoot. Expression is regulated by copper%2C but response to copper deficiency is detected only after three weeks of deficiency.; computational_description=zinc transporter 4 precursor (ZIP4)%3B CONTAINS InterPro DOMAIN/s: Zinc/iron permease%2C fungal/plant (InterPro:IPR004698)%2C Zinc/iron permease (InterPro:IPR003689)%3B BEST Arabidopsis thaliana protein match is: iron regulated transporter 3 (TAIR:AT1G60960.1)%3B Has 2241 Blast hits to 2085 proteins in 351 species: Archae - 0%3B Bacteria - 278%3B Metazoa - 580%3B Fungi - 588%3B Plants - 521%3B Viruses - 0%3B Other Eukaryotes - 274 (source: NCBI BLink).; locus_type=protein_coding
AT1G10980.1	chr1:003667531	0.0	C/3667531-3667696,3667877-3668007,3668096-3668194,3668395-3669319,3669592-3669821	AT1G10980.1 CDS AT1G10980 ID=AT1G10980.1; Parent=AT1G10980; Name=AT1G10980.1; Note=Lung seven transmembrane receptor family protein; conf_class=1; computational_description=Lung seven transmembrane receptor family protein%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: vacuole%3B EXPRESSED IN: 8 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Transmembrane receptor%2C eukaryota (InterPro:IPR009637)%3B BEST Arabidopsis thaliana protein match is: Lung seven transmembrane receptor family protein (TAIR:AT1G61670.1)%3B Has 670 Blast hits to 669 proteins in 172 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 291%3B Fungi - 146%3B Plants - 175%3B Viruses - 0%3B Other Eukaryotes - 58 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11115874, PMID:16709272, PMID:16951057, locus:2197449; locus_type=protein_coding
AT1G10990.1	chr1:003670513	0.0	C/3670513-3670901,3670980-3671091	AT1G10990.1 CDS AT1G10990 ID=AT1G10990.1; Parent=AT1G10990; Name=AT1G10990.1; Note=transmembrane protein; conf_class=2; computational_description=unknown protein%3B Has 4 Blast hits to 4 proteins in 1 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 4%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15546358, locus:2197339; locus_type=protein_coding
AT1G10990.2	chr1:003670513	0.0	C/3670513-3671091	AT1G10990.2 CDS AT1G10990 ID=AT1G10990.2; Parent=AT1G10990; Name=AT1G10990.2; Note=transmembrane protein; conf_class=1; computational_description=unknown protein%3B Has 4 Blast hits to 4 proteins in 1 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 4%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15546358, locus:2197339; locus_type=protein_coding
AT1G11000.1	chr1:003671935	0.0	C/3671935-3672390,3672500-3672560,3672637-3672704,3672794-3672829,3672922-3673095,3673188-3673228,3673320-3673369,3673486-3673571,3673717-3673791,3673929-3674020,3674466-3674526,3674840-3674956,3675048-3675268,3675358-3675415,3675784-3675909	AT1G11000.1 CDS AT1G11000 ID=AT1G11000.1; Parent=AT1G11000; Name=AT1G11000.1; Note=Seven transmembrane MLO family protein; curator_summary=A member of a large family of seven-transmembrane domain proteins specific to plants%2C homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins%2C with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO4 belongs to the clade I%2C with AtMLO11 and AtMLO14. The gene is expressed during early seedling growth%2C in roots and lateral root primordia%2C in flower and fruit abscission zone%2C in vascular system of root%2C cotyledons and young leaves%2C it was not expressed in mature rosette leaves%2C as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli%2C suggesting functional redundancy%2C co-function%2C or antagonistic function(s).; conf_class=2; symbol=MLO4; Alias=ATMLO4, MILDEW RESISTANCE LOCUS O 4; full_name=MILDEW RESISTANCE LOCUS O 4; computational_description=MILDEW RESISTANCE LOCUS O 4 (MLO4)%3B FUNCTIONS IN: calmodulin binding%3B INVOLVED IN: cell death%2C defense response%3B LOCATED IN: integral to membrane%2C plasma membrane%3B EXPRESSED IN: 18 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Mlo-related protein (InterPro:IPR004326)%3B BEST Arabidopsis thaliana protein match is: Seven transmembrane MLO family protein (TAIR:AT5G53760.2)%3B Has 528 Blast hits to 517 proteins in 50 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 522%3B Viruses - 0%3B Other Eukaryotes - 6 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12569425, PMID:15047898, PMID:16525893, PMID:16920880, PMID:17064408, PMID:19602625, PMID:20736450, PMID:24738718, locus:2197439; locus_type=protein_coding
AT1G11000.3	chr1:003671935	0.0	C/3671935-3672390,3672500-3672560,3672637-3672704,3672794-3672829,3672922-3673095,3673188-3673228,3673320-3673369,3673486-3673571,3673717-3673791,3673929-3674020,3674466-3674526,3674840-3674956,3675048-3675268,3675358-3675415,3675784-3675909	AT1G11000.3 CDS AT1G11000 ID=AT1G11000.3; Parent=AT1G11000; Name=AT1G11000.3; Note=Seven transmembrane MLO family protein; symbol=MLO4; Alias=ATMLO4, MILDEW RESISTANCE LOCUS O 4; full_name=MILDEW RESISTANCE LOCUS O 4; Dbxref=PMID:12569425, PMID:15047898, PMID:16525893, PMID:16920880, PMID:17064408, PMID:19602625, PMID:20736450, PMID:24738718, locus:2197439; curator_summary=A member of a large family of seven-transmembrane domain proteins specific to plants%2C homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins%2C with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO4 belongs to the clade I%2C with AtMLO11 and AtMLO14. The gene is expressed during early seedling growth%2C in roots and lateral root primordia%2C in flower and fruit abscission zone%2C in vascular system of root%2C cotyledons and young leaves%2C it was not expressed in mature rosette leaves%2C as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli%2C suggesting functional redundancy%2C co-function%2C or antagonistic function(s).; computational_description=MILDEW RESISTANCE LOCUS O 4 (MLO4)%3B FUNCTIONS IN: calmodulin binding%3B INVOLVED IN: cell death%2C defense response%3B LOCATED IN: integral to membrane%2C plasma membrane%3B EXPRESSED IN: 18 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Mlo-related protein (InterPro:IPR004326)%3B BEST Arabidopsis thaliana protein match is: Seven transmembrane MLO family protein (TAIR:AT5G53760.2)%3B Has 528 Blast hits to 517 proteins in 50 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 522%3B Viruses - 0%3B Other Eukaryotes - 6 (source: NCBI BLink).; locus_type=protein_coding
AT1G11000.2	chr1:003672567	0.0	C/3672567-3672704,3672794-3672829,3672922-3673095,3673188-3673228,3673320-3673369,3673486-3673571,3673717-3673791,3673929-3674020,3674466-3674526,3674840-3674956,3675048-3675268,3675358-3675415,3675784-3675909	AT1G11000.2 CDS AT1G11000 ID=AT1G11000.2; Parent=AT1G11000; Name=AT1G11000.2; Note=Seven transmembrane MLO family protein; symbol=MLO4; Alias=ATMLO4, MILDEW RESISTANCE LOCUS O 4; full_name=MILDEW RESISTANCE LOCUS O 4; curator_summary=A member of a large family of seven-transmembrane domain proteins specific to plants%2C homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins%2C with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO4 belongs to the clade I%2C with AtMLO11 and AtMLO14. The gene is expressed during early seedling growth%2C in roots and lateral root primordia%2C in flower and fruit abscission zone%2C in vascular system of root%2C cotyledons and young leaves%2C it was not expressed in mature rosette leaves%2C as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli%2C suggesting functional redundancy%2C co-function%2C or antagonistic function(s).; computational_description=MILDEW RESISTANCE LOCUS O 4 (MLO4)%3B FUNCTIONS IN: calmodulin binding%3B INVOLVED IN: cell death%2C defense response%3B LOCATED IN: integral to membrane%2C plasma membrane%3B EXPRESSED IN: 18 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Mlo-related protein (InterPro:IPR004326)%3B BEST Arabidopsis thaliana protein match is: Seven transmembrane MLO family protein (TAIR:AT5G53760.2)%3B Has 528 Blast hits to 517 proteins in 50 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 522%3B Viruses - 0%3B Other Eukaryotes - 6 (source: NCBI BLink).; Dbxref=PMID:12569425, PMID:15047898, PMID:16525893, PMID:16920880, PMID:17064408, PMID:19602625, PMID:20736450, PMID:24738718, locus:2197439; locus_type=protein_coding
AT1TE11950	chr1:003672593	0.0	W/3672593-3673012	AT1TE11950 transposable_element AT1TE11950 ID=AT1TE11950; Name=AT1TE11950; Alias=VANDAL5
AT1G11010.1	chr1:003676607	0.0	W/3676607-3676691	AT1G11010.1 tRNA AT1G11010 ID=AT1G11010.1; Parent=AT1G11010; Note=tRNA-Met; computational_description=tRNA-Met (anticodon: CAT); Dbxref=PMID:8980477, PMID:23066098, PMID:8980477, locus:3692107; Name=AT1G11010.1; locus_type=pre_trna
AT1G11020.1	chr1:003676968	0.0	W/3676968-3677429,3677733-3677856,3677971-3678350	AT1G11020.1 CDS AT1G11020 ID=AT1G11020.1; Parent=AT1G11020; Name=AT1G11020.1; Note=RING/FYVE/PHD zinc finger superfamily protein; conf_class=2; computational_description=RING/FYVE/PHD zinc finger superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%2C Zinc finger%2C RING-CH-type (InterPro:IPR011016)%3B BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT2G22120.2)%3B Has 1259 Blast hits to 1258 proteins in 177 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 590%3B Fungi - 144%3B Plants - 311%3B Viruses - 11%3B Other Eukaryotes - 203 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18650403, PMID:18775970, PMID:20736450, locus:2197434; locus_type=protein_coding
AT1G11030.1	chr1:003678775	0.0	C/3678775-3678848	AT1G11030.1 tRNA AT1G11030 ID=AT1G11030.1; Parent=AT1G11030; Note=tRNA-Arg; computational_description=tRNA-Arg (anticodon: TCG); Dbxref=PMID:8980477, PMID:23066098, PMID:8980477, locus:3692110; Name=AT1G11030.1; locus_type=pre_trna
AT1G11040.1	chr1:003679225	0.0	C/3679225-3679675,3679750-3680477,3680787-3680924	AT1G11040.1 CDS AT1G11040 ID=AT1G11040.1; Parent=AT1G11040; Name=AT1G11040.1; Note=HSP40/DnaJ peptide-binding protein; conf_class=1; computational_description=HSP40/DnaJ peptide-binding protein%3B FUNCTIONS IN: unfolded protein binding%2C heat shock protein binding%3B INVOLVED IN: protein folding%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: petal%2C leaf whorl%2C male gametophyte%2C flower%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Molecular chaperone%2C heat shock protein%2C Hsp40%2C DnaJ (InterPro:IPR015609)%2C HSP40/DnaJ peptide-binding (InterPro:IPR008971)%2C Chaperone DnaJ%2C C-terminal (InterPro:IPR002939)%2C Heat shock protein DnaJ (InterPro:IPR003095)%3B BEST Arabidopsis thaliana protein match is: HSP40/DnaJ peptide-binding protein (TAIR:AT1G44160.1)%3B Has 19507 Blast hits to 13358 proteins in 2831 species: Archae - 102%3B Bacteria - 8184%3B Metazoa - 2012%3B Fungi - 1146%3B Plants - 786%3B Viruses - 38%3B Other Eukaryotes - 7239 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:18775970, PMID:20736450, locus:2197429; locus_type=protein_coding
AT1G04833.1	chr1:003681804	0.0	C/3681804-3684151	AT1G04833.1 antisense_lncRNA AT1G04833 ID=AT1G04833.1; Parent=AT1G04833; Name=AT1G04833.1; description=Natural antisense transcript overlaps with AT1G11050; Note=Natural antisense transcript overlaps with AT1G11050; locus_type=antisense_long_noncoding_rna
AT1G11050.1	chr1:003681892	0.0	W/3681892-3683769	AT1G11050.1 CDS AT1G11050 ID=AT1G11050.1; Parent=AT1G11050; Name=AT1G11050.1; Note=Protein kinase superfamily protein; conf_class=1; computational_description=Protein kinase superfamily protein%3B FUNCTIONS IN: kinase activity%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 18 plant structures%3B EXPRESSED DURING: 10 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: receptor-like kinase in in flowers 3 (TAIR:AT2G48010.1)%3B Has 115297 Blast hits to 114175 proteins in 4324 species: Archae - 104%3B Bacteria - 13350%3B Metazoa - 42303%3B Fungi - 9816%3B Plants - 32853%3B Viruses - 335%3B Other Eukaryotes - 16536 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12805619, PMID:14535885, PMID:15181213, PMID:16920880, PMID:16951057, PMID:18493073, PMID:18650403, PMID:20736450, PMID:21477822, locus:2197414; locus_type=protein_coding
AT1G11055.1	chr1:003683919	0.0	C/3683919-3684095	AT1G11055.1 pseudogenic_transcript AT1G11055 ID=AT1G11055.1; Parent=AT1G11055; Name=AT1G11055.1; index=1; Note=pseudogene; curator_summary=Encodes a defensin-like (DEFL) family protein.; Dbxref=locus:1009023095, locus:1009023095; locus_type=pseudogene
AT1G11060.1	chr1:003684568	0.0	W/3684568-3685193,3685688-3685787,3685921-3686260,3686457-3686569,3687025-3687153,3687294-3687387,3687489-3687593,3687702-3688321,3688425-3688678,3688859-3689006,3689099-3689196,3689283-3689364,3689454-3689537	AT1G11060.1 CDS AT1G11060 ID=AT1G11060.1; Parent=AT1G11060; Name=AT1G11060.1; Note=WAPL (Wings apart-like protein regulation of heterochromatin) protein; curator_summary=Encodes one of two redundant proteins (the other is WAPL2) that are involved in prophase removal of cohesion during meiosis. Double mutants with wapl2 exhibit reduced fertility due to defects in meiosis and also some abnormal embryo development in rare cases where embryos are formed.; conf_class=3; Alias=AtWAPL1, WAPL1, Wings apart-like protein 1; computational_description=WAPL (Wings apart-like protein regulation of heterochromatin) protein%3B BEST Arabidopsis thaliana protein match is: WAPL (Wings apart-like protein regulation of heterochromatin) protein (TAIR:AT1G61030.1)%3B Has 319 Blast hits to 253 proteins in 105 species: Archae - 2%3B Bacteria - 73%3B Metazoa - 168%3B Fungi - 7%3B Plants - 48%3B Viruses - 0%3B Other Eukaryotes - 21 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:20736450, PMID:23028719, PMID:25033056, locus:2197399; locus_type=protein_coding
AT1G11070.1	chr1:003690406	0.0	C/3690406-3690624,3690706-3690858,3690969-3691133,3691225-3691390,3691462-3692434,3692530-3692653,3692731-3692826,3693196-3693510,3693622-3693648	AT1G11070.1 CDS AT1G11070 ID=AT1G11070.1; Parent=AT1G11070; Name=AT1G11070.1; Note=hydroxyproline-rich glycoprotein family protein; conf_class=6; computational_description=BEST Arabidopsis thaliana protein match is: Hydroxyproline-rich glycoprotein family protein (TAIR:AT1G61080.1)%3B Has 579 Blast hits to 567 proteins in 152 species: Archae - 0%3B Bacteria - 68%3B Metazoa - 159%3B Fungi - 113%3B Plants - 172%3B Viruses - 0%3B Other Eukaryotes - 67 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:14722770, PMID:20226671, PMID:20736450, locus:2197419; locus_type=protein_coding
AT1G11070.4	chr1:003690406	0.0	C/3690406-3690624,3690706-3690858,3690969-3691133,3691225-3691390,3691462-3692434,3692530-3692653,3692731-3692826,3693196-3693510,3693622-3693651	AT1G11070.4 CDS AT1G11070 ID=AT1G11070.4; Parent=AT1G11070; Name=AT1G11070.4; Note=hydroxyproline-rich glycoprotein family protein; computational_description=BEST Arabidopsis thaliana protein match is: Hydroxyproline-rich glycoprotein family protein (TAIR:AT1G61080.1)%3B Has 579 Blast hits to 567 proteins in 152 species: Archae - 0%3B Bacteria - 68%3B Metazoa - 159%3B Fungi - 113%3B Plants - 172%3B Viruses - 0%3B Other Eukaryotes - 67 (source: NCBI BLink).; Dbxref=PMID:14722770, PMID:20226671, PMID:20736450, locus:2197419; locus_type=protein_coding
AT1G11070.2	chr1:003690894	0.0	C/3690894-3691133,3691225-3691390,3691462-3692434,3692530-3692653,3692731-3692826,3693196-3693510,3693622-3693651	AT1G11070.2 CDS AT1G11070 ID=AT1G11070.2; Parent=AT1G11070; Name=AT1G11070.2; Note=hydroxyproline-rich glycoprotein family protein; computational_description=BEST Arabidopsis thaliana protein match is: Hydroxyproline-rich glycoprotein family protein (TAIR:AT1G61080.1)%3B Has 579 Blast hits to 567 proteins in 152 species: Archae - 0%3B Bacteria - 68%3B Metazoa - 159%3B Fungi - 113%3B Plants - 172%3B Viruses - 0%3B Other Eukaryotes - 67 (source: NCBI BLink).; Dbxref=PMID:14722770, PMID:20226671, PMID:20736450, locus:2197419; locus_type=protein_coding
AT1G11070.3	chr1:003690894	0.0	C/3690894-3691133,3691225-3691390,3691462-3692434,3692530-3692653,3692731-3692826,3693196-3693510,3693622-3693651	AT1G11070.3 CDS AT1G11070 ID=AT1G11070.3; Parent=AT1G11070; Name=AT1G11070.3; Note=hydroxyproline-rich glycoprotein family protein; computational_description=BEST Arabidopsis thaliana protein match is: Hydroxyproline-rich glycoprotein family protein (TAIR:AT1G61080.1)%3B Has 579 Blast hits to 567 proteins in 152 species: Archae - 0%3B Bacteria - 68%3B Metazoa - 159%3B Fungi - 113%3B Plants - 172%3B Viruses - 0%3B Other Eukaryotes - 67 (source: NCBI BLink).; Dbxref=PMID:14722770, PMID:20226671, PMID:20736450, locus:2197419; locus_type=protein_coding
AT1G11070.5	chr1:003690894	0.0	C/3690894-3691133,3691225-3691390,3691462-3692434,3692530-3692653,3692731-3692826,3693196-3693279	AT1G11070.5 CDS AT1G11070 ID=AT1G11070.5; Parent=AT1G11070; Name=AT1G11070.5; Note=hydroxyproline-rich glycoprotein family protein; computational_description=BEST Arabidopsis thaliana protein match is: Hydroxyproline-rich glycoprotein family protein (TAIR:AT1G61080.1)%3B Has 579 Blast hits to 567 proteins in 152 species: Archae - 0%3B Bacteria - 68%3B Metazoa - 159%3B Fungi - 113%3B Plants - 172%3B Viruses - 0%3B Other Eukaryotes - 67 (source: NCBI BLink).; Dbxref=PMID:14722770, PMID:20226671, PMID:20736450, locus:2197419; locus_type=protein_coding
AT1G11080.2	chr1:003694809	0.0	C/3694809-3694821,3694921-3695063,3695151-3695256,3695521-3695616,3695704-3695837,3695919-3696215,3696395-3696492,3696626-3696718,3696812-3696907,3697011-3697118,3697456-3697759	AT1G11080.2 CDS AT1G11080 ID=AT1G11080.2; Parent=AT1G11080; Name=AT1G11080.2; Note=serine carboxypeptidase-like 31; conf_class=3; symbol=scpl31; full_name=serine carboxypeptidase-like 31; computational_description=serine carboxypeptidase-like 31 (scpl31)%3B FUNCTIONS IN: serine-type carboxypeptidase activity%3B INVOLVED IN: proteolysis%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 4 anthesis%2C C globular stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: Peptidase S10%2C serine carboxypeptidase (InterPro:IPR001563)%2C Peptidase S10%2C serine carboxypeptidase%2C active site (InterPro:IPR018202)%3B BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 30 (TAIR:AT4G15100.1)%3B Has 3569 Blast hits to 3515 proteins in 359 species: Archae - 0%3B Bacteria - 168%3B Metazoa - 632%3B Fungi - 857%3B Plants - 1467%3B Viruses - 0%3B Other Eukaryotes - 445 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15489341, PMID:15908604, PMID:16766693, PMID:16895613, PMID:17061125, PMID:18613973, locus:2197384; locus_type=protein_coding
AT1G11080.1	chr1:003694917	0.0	C/3694917-3695063,3695151-3695256,3695521-3695616,3695704-3695837,3695919-3696215,3696395-3696492,3696626-3696718,3696812-3696907,3697011-3697118,3697456-3697759	AT1G11080.1 CDS AT1G11080 ID=AT1G11080.1; Parent=AT1G11080; Name=AT1G11080.1; Note=serine carboxypeptidase-like 31; conf_class=2; symbol=scpl31; full_name=serine carboxypeptidase-like 31; computational_description=serine carboxypeptidase-like 31 (scpl31)%3B FUNCTIONS IN: serine-type carboxypeptidase activity%3B INVOLVED IN: proteolysis%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 4 anthesis%2C C globular stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: Peptidase S10%2C serine carboxypeptidase (InterPro:IPR001563)%2C Peptidase S10%2C serine carboxypeptidase%2C active site (InterPro:IPR018202)%3B BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 30 (TAIR:AT4G15100.1)%3B Has 3569 Blast hits to 3515 proteins in 359 species: Archae - 0%3B Bacteria - 168%3B Metazoa - 632%3B Fungi - 857%3B Plants - 1467%3B Viruses - 0%3B Other Eukaryotes - 445 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15489341, PMID:15908604, PMID:16766693, PMID:16895613, PMID:17061125, PMID:18613973, locus:2197384; locus_type=protein_coding
AT1G04837.1	chr1:003702554	0.0	C/3702554-3703796	AT1G04837.1 antisense_lncRNA AT1G04837 ID=AT1G04837.1; Parent=AT1G04837; Name=AT1G04837.1; description=Natural antisense transcript overlaps with AT1G11090; Note=Natural antisense transcript overlaps with AT1G11090; locus_type=antisense_long_noncoding_rna
AT1G11090.1	chr1:003702655	0.0	W/3702655-3703629	AT1G11090.1 CDS AT1G11090 ID=AT1G11090.1; Parent=AT1G11090; Name=AT1G11090.1; Note=alpha/beta-Hydrolases superfamily protein; conf_class=1; computational_description=alpha/beta-Hydrolases superfamily protein%3B CONTAINS InterPro DOMAIN/s: Serine hydrolase (InterPro:IPR005645)%3B BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G47630.1)%3B Has 3873 Blast hits to 3868 proteins in 1106 species: Archae - 36%3B Bacteria - 2649%3B Metazoa - 131%3B Fungi - 140%3B Plants - 451%3B Viruses - 35%3B Other Eukaryotes - 431 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:20736450, PMID:23505340, locus:2197369; locus_type=protein_coding
AT1G11100.1	chr1:003703934	0.0	C/3703934-3704038,3704131-3704340,3704444-3705040,3705181-3705390,3705492-3705622,3705705-3706056,3706189-3706548,3706656-3706733,3706961-3707032,3707346-3708469,3708585-3708806,3708978-3709056,3709162-3709302	AT1G11100.1 CDS AT1G11100 ID=AT1G11100.1; Parent=AT1G11100; Name=AT1G11100.1; Note=SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein; conf_class=6; Alias=FRG5, SNF2-RING-HELICASE?LIKE 5; computational_description=SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related%3B FUNCTIONS IN: helicase activity%2C DNA binding%2C zinc ion binding%2C nucleic acid binding%2C ATP binding%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type%2C conserved site (InterPro:IPR017907)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C DEAD-like helicase%2C N-terminal (InterPro:IPR014001)%2C DNA/RNA helicase%2C C-terminal (InterPro:IPR001650)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain (InterPro:IPR014021)%2C SNF2-related (InterPro:IPR000330)%3B BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (TAIR:AT1G61140.1)%3B Has 23913 Blast hits to 14415 proteins in 1657 species: Archae - 99%3B Bacteria - 7103%3B Metazoa - 5587%3B Fungi - 5290%3B Plants - 2119%3B Viruses - 156%3B Other Eukaryotes - 3559 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:11983057, PMID:12609040, PMID:16489130, PMID:18775970, PMID:20736450, PMID:25425661, locus:2197344; locus_type=protein_coding
AT1G11100.2	chr1:003703934	0.0	C/3703934-3704038,3704131-3704340,3704444-3705040,3705181-3705390,3705492-3705622,3705705-3706548,3706656-3706733,3706961-3707032,3707346-3708469,3708585-3708806,3708981-3709056,3709162-3709302	AT1G11100.2 CDS AT1G11100 ID=AT1G11100.2; Parent=AT1G11100; Name=AT1G11100.2; Note=SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein; conf_class=3; Alias=FRG5, SNF2-RING-HELICASE?LIKE 5; computational_description=SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related%3B FUNCTIONS IN: helicase activity%2C DNA binding%2C zinc ion binding%2C nucleic acid binding%2C ATP binding%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type%2C conserved site (InterPro:IPR017907)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C DEAD-like helicase%2C N-terminal (InterPro:IPR014001)%2C DNA/RNA helicase%2C C-terminal (InterPro:IPR001650)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain (InterPro:IPR014021)%2C SNF2-related (InterPro:IPR000330)%3B BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (TAIR:AT1G61140.1)%3B Has 23913 Blast hits to 14415 proteins in 1657 species: Archae - 99%3B Bacteria - 7103%3B Metazoa - 5587%3B Fungi - 5290%3B Plants - 2119%3B Viruses - 156%3B Other Eukaryotes - 3559 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11983057, PMID:12609040, PMID:16489130, PMID:18775970, PMID:20736450, PMID:25425661, locus:2197344; locus_type=protein_coding
AT1G11100.3	chr1:003703934	0.0	C/3703934-3704038,3704131-3704340,3704444-3705040,3705181-3705390,3705492-3705622,3705705-3706548,3706656-3706733,3706961-3707032,3707346-3708469,3708557-3708569	AT1G11100.3 CDS AT1G11100 ID=AT1G11100.3; Parent=AT1G11100; Name=AT1G11100.3; Note=SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein; Alias=FRG5, SNF2-RING-HELICASE?LIKE 5; computational_description=SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related%3B FUNCTIONS IN: helicase activity%2C DNA binding%2C zinc ion binding%2C nucleic acid binding%2C ATP binding%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type%2C conserved site (InterPro:IPR017907)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C DEAD-like helicase%2C N-terminal (InterPro:IPR014001)%2C DNA/RNA helicase%2C C-terminal (InterPro:IPR001650)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain (InterPro:IPR014021)%2C SNF2-related (InterPro:IPR000330)%3B BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (TAIR:AT1G61140.1)%3B Has 23913 Blast hits to 14415 proteins in 1657 species: Archae - 99%3B Bacteria - 7103%3B Metazoa - 5587%3B Fungi - 5290%3B Plants - 2119%3B Viruses - 156%3B Other Eukaryotes - 3559 (source: NCBI BLink).; Dbxref=PMID:11983057, PMID:12609040, PMID:16489130, PMID:18775970, PMID:20736450, PMID:25425661, locus:2197344; locus_type=protein_coding
AT1G11100.4	chr1:003703934	0.0	C/3703934-3704038,3704131-3704340,3704444-3705040,3705181-3705390,3705492-3705622,3705705-3706548,3706656-3706733,3706961-3707032,3707346-3708469,3708585-3708806,3708978-3709056,3709162-3709302	AT1G11100.4 CDS AT1G11100 ID=AT1G11100.4; Parent=AT1G11100; Name=AT1G11100.4; Note=SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein; Alias=FRG5, SNF2-RING-HELICASE?LIKE 5; computational_description=SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related%3B FUNCTIONS IN: helicase activity%2C DNA binding%2C zinc ion binding%2C nucleic acid binding%2C ATP binding%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type%2C conserved site (InterPro:IPR017907)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C DEAD-like helicase%2C N-terminal (InterPro:IPR014001)%2C DNA/RNA helicase%2C C-terminal (InterPro:IPR001650)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain (InterPro:IPR014021)%2C SNF2-related (InterPro:IPR000330)%3B BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (TAIR:AT1G61140.1)%3B Has 23913 Blast hits to 14415 proteins in 1657 species: Archae - 99%3B Bacteria - 7103%3B Metazoa - 5587%3B Fungi - 5290%3B Plants - 2119%3B Viruses - 156%3B Other Eukaryotes - 3559 (source: NCBI BLink).; Dbxref=PMID:11983057, PMID:12609040, PMID:16489130, PMID:18775970, PMID:20736450, PMID:25425661, locus:2197344; locus_type=protein_coding
AT1G11100.5	chr1:003703934	0.0	C/3703934-3704038,3704131-3704340,3704444-3705040,3705181-3705390,3705492-3705622,3705705-3706056,3706189-3706548,3706656-3706733,3706961-3707032,3707346-3708469,3708557-3708569	AT1G11100.5 CDS AT1G11100 ID=AT1G11100.5; Parent=AT1G11100; Name=AT1G11100.5; Note=SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein; Alias=FRG5, SNF2-RING-HELICASE?LIKE 5; computational_description=SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related%3B FUNCTIONS IN: helicase activity%2C DNA binding%2C zinc ion binding%2C nucleic acid binding%2C ATP binding%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type%2C conserved site (InterPro:IPR017907)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C DEAD-like helicase%2C N-terminal (InterPro:IPR014001)%2C DNA/RNA helicase%2C C-terminal (InterPro:IPR001650)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain (InterPro:IPR014021)%2C SNF2-related (InterPro:IPR000330)%3B BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (TAIR:AT1G61140.1)%3B Has 23913 Blast hits to 14415 proteins in 1657 species: Archae - 99%3B Bacteria - 7103%3B Metazoa - 5587%3B Fungi - 5290%3B Plants - 2119%3B Viruses - 156%3B Other Eukaryotes - 3559 (source: NCBI BLink).; Dbxref=PMID:11983057, PMID:12609040, PMID:16489130, PMID:18775970, PMID:20736450, PMID:25425661, locus:2197344; locus_type=protein_coding
AT1G11110.1	chr1:003710364	0.0	W/3710364-3710387,3710573-3710855,3710949-3711055,3711173-3711295,3711561-3711723,3711972-3712108	AT1G11110.1 CDS AT1G11110 ID=AT1G11110.1; Parent=AT1G11110; Name=AT1G11110.1; Note=LisH and RanBPM domains containing protein; conf_class=1; computational_description=LisH and RanBPM domains containing protein%3B CONTAINS InterPro DOMAIN/s: LisH dimerisation motif%2C subgroup (InterPro:IPR013720)%2C Ran binding protein%2C CRA domain (InterPro:IPR019589)%2C CTLH%2C C-terminal LisH motif (InterPro:IPR006595)%2C LisH dimerisation motif (InterPro:IPR006594)%2C Ran binding protein-like%2C CRA domain (InterPro:IPR013144)%3B BEST Arabidopsis thaliana protein match is: LisH and RanBPM domains containing protein (TAIR:AT1G61150.6)%3B Has 472 Blast hits to 472 proteins in 160 species: Archae - 0%3B Bacteria - 20%3B Metazoa - 190%3B Fungi - 95%3B Plants - 94%3B Viruses - 0%3B Other Eukaryotes - 73 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:2197404; locus_type=protein_coding
AT1G11110.3	chr1:003710505	0.0	W/3710505-3710507,3710573-3710855,3710949-3711055,3711173-3711295,3711561-3711723,3711972-3712108	AT1G11110.3 CDS AT1G11110 ID=AT1G11110.3; Parent=AT1G11110; Name=AT1G11110.3; Note=LisH and RanBPM domains containing protein; computational_description=LisH and RanBPM domains containing protein%3B CONTAINS InterPro DOMAIN/s: LisH dimerisation motif%2C subgroup (InterPro:IPR013720)%2C Ran binding protein%2C CRA domain (InterPro:IPR019589)%2C CTLH%2C C-terminal LisH motif (InterPro:IPR006595)%2C LisH dimerisation motif (InterPro:IPR006594)%2C Ran binding protein-like%2C CRA domain (InterPro:IPR013144)%3B BEST Arabidopsis thaliana protein match is: LisH and RanBPM domains containing protein (TAIR:AT1G61150.6)%3B Has 472 Blast hits to 472 proteins in 160 species: Archae - 0%3B Bacteria - 20%3B Metazoa - 190%3B Fungi - 95%3B Plants - 94%3B Viruses - 0%3B Other Eukaryotes - 73 (source: NCBI BLink).; Dbxref=locus:2197404; locus_type=protein_coding
AT1G11110.2	chr1:003710717	0.0	W/3710717-3710855,3710949-3711055,3711173-3711295,3711561-3711723,3711972-3712108	AT1G11110.2 CDS AT1G11110 ID=AT1G11110.2; Parent=AT1G11110; Name=AT1G11110.2; Note=LisH and RanBPM domains containing protein; computational_description=LisH and RanBPM domains containing protein%3B CONTAINS InterPro DOMAIN/s: LisH dimerisation motif%2C subgroup (InterPro:IPR013720)%2C Ran binding protein%2C CRA domain (InterPro:IPR019589)%2C CTLH%2C C-terminal LisH motif (InterPro:IPR006595)%2C LisH dimerisation motif (InterPro:IPR006594)%2C Ran binding protein-like%2C CRA domain (InterPro:IPR013144)%3B BEST Arabidopsis thaliana protein match is: LisH and RanBPM domains containing protein (TAIR:AT1G61150.6)%3B Has 472 Blast hits to 472 proteins in 160 species: Archae - 0%3B Bacteria - 20%3B Metazoa - 190%3B Fungi - 95%3B Plants - 94%3B Viruses - 0%3B Other Eukaryotes - 73 (source: NCBI BLink).; Dbxref=locus:2197404; locus_type=protein_coding
AT1G11112.1	chr1:003713220	0.0	C/3713220-3713456	AT1G11112.1 CDS AT1G11112 ID=AT1G11112.1; Parent=AT1G11112; Name=AT1G11112.1; Note=hypothetical protein; conf_class=1; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:4515102516; locus_type=protein_coding
AT1TE12090	chr1:003715119	0.0	C/3715119-3715209	AT1TE12090 transposable_element AT1TE12090 ID=AT1TE12090; Name=AT1TE12090; Alias=ATLANTYS1
AT1G11120.1	chr1:003715229	0.0	W/3715229-3715547,3716506-3716579,3717150-3717320	AT1G11120.1 CDS AT1G11120 ID=AT1G11120.1; Parent=AT1G11120; Name=AT1G11120.1; Note=CTTNBP 2 amino-terminal-like protein; conf_class=6; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09812.1)%3B Has 270 Blast hits to 255 proteins in 62 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 93%3B Fungi - 14%3B Plants - 126%3B Viruses - 0%3B Other Eukaryotes - 35 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:20736450, locus:2197389; locus_type=protein_coding
AT1G11120.2	chr1:003715229	0.0	W/3715229-3715543,3717150-3717320	AT1G11120.2 CDS AT1G11120 ID=AT1G11120.2; Parent=AT1G11120; Name=AT1G11120.2; Note=CTTNBP 2 amino-terminal-like protein; conf_class=1; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09812.1)%3B Has 270 Blast hits to 255 proteins in 62 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 93%3B Fungi - 14%3B Plants - 126%3B Viruses - 0%3B Other Eukaryotes - 35 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:20736450, locus:2197389; locus_type=protein_coding
AT1G11125.1	chr1:003718846	0.0	W/3718846-3719643	AT1G11125.1 CDS AT1G11125 ID=AT1G11125.1; Parent=AT1G11125; Name=AT1G11125.1; Note=hypothetical protein; conf_class=1; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G61170.1).; conf_rating=*****; Dbxref=locus:6530298136; locus_type=protein_coding
AT1G11130.1	chr1:003723135	0.0	W/3723135-3723225,3723603-3723732,3723830-3723901,3724067-3724132,3724224-3724295,3724379-3724450,3724530-3724601,3724676-3724741,3724839-3724904,3724988-3725481,3725578-3725936,3726027-3726298,3726372-3726510,3726594-3726709,3726846-3727002,3727116-3727178	AT1G11130.1 CDS AT1G11130 ID=AT1G11130.1; Parent=AT1G11130; Name=AT1G11130.1; Note=Leucine-rich repeat protein kinase family protein; curator_summary=Encodes a receptor-like kinase protein with a predicted extracellular domain of six leucine-rich repeats and an intracellular serine-threonine kinase domain expressed throughout the developing root. Regulates expression of GLABRA2%2C CAPRICE%2C WEREWOLF%2C and ENHANCER OF GLABRA3. Required for floral organ shape%2C the development of the outer integument of ovules%2C and stem development. Regulates cell shape and cell division planes in the L2 layer of floral meristems and the L1-derived outer integument of ovules. Controls specification of epidermal root hairs. Participates in the coordination of cell morphogenesis between cell layers during floral development.; conf_class=2; symbol=SUB; Alias=SCM, SCRAMBLED, SRF9, STRUBBELIG-RECEPTOR FAMILY 9; full_name=STRUBBELIG; computational_description=STRUBBELIG (SUB)%3B FUNCTIONS IN: receptor signaling protein serine/threonine kinase activity%3B INVOLVED IN: in 8 processes%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 16 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Leucine-rich repeat (InterPro:IPR001611)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%3B BEST Arabidopsis thaliana protein match is: STRUBBELIG-receptor family 3 (TAIR:AT4G03390.1)%3B Has 153928 Blast hits to 101875 proteins in 2737 species: Archae - 122%3B Bacteria - 10876%3B Metazoa - 38100%3B Fungi - 7570%3B Plants - 81122%3B Viruses - 718%3B Other Eukaryotes - 15420 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11751054, PMID:15058443, PMID:15618487, PMID:15951420, PMID:16317033, PMID:17027738, PMID:18771664, PMID:19097902, PMID:19180193, PMID:19704725, PMID:19794855, PMID:20298225, PMID:20356954, PMID:21037570, PMID:21379334, PMID:21603601, PMID:22805005, PMID:23368817, PMID:24173806, PMID:24130712, PMID:25136062, PMID:25256344, PMID:25482776, locus:2202084; locus_type=protein_coding
AT1G11130.2	chr1:003723843	0.0	W/3723843-3723901,3724067-3724132,3724224-3724295,3724379-3724450,3724530-3724601,3724676-3724741,3724839-3724904,3724988-3725481,3725578-3725936,3726027-3726298,3726372-3726510,3726594-3726709,3726846-3727002,3727116-3727178	AT1G11130.2 CDS AT1G11130 ID=AT1G11130.2; Parent=AT1G11130; Name=AT1G11130.2; Note=Leucine-rich repeat protein kinase family protein; symbol=SUB; Alias=SCM, SCRAMBLED, SRF9, STRUBBELIG-RECEPTOR FAMILY 9; full_name=STRUBBELIG; curator_summary=Encodes a receptor-like kinase protein with a predicted extracellular domain of six leucine-rich repeats and an intracellular serine-threonine kinase domain expressed throughout the developing root. Regulates expression of GLABRA2%2C CAPRICE%2C WEREWOLF%2C and ENHANCER OF GLABRA3. Required for floral organ shape%2C the development of the outer integument of ovules%2C and stem development. Regulates cell shape and cell division planes in the L2 layer of floral meristems and the L1-derived outer integument of ovules. Controls specification of epidermal root hairs. Participates in the coordination of cell morphogenesis between cell layers during floral development.; computational_description=STRUBBELIG (SUB)%3B FUNCTIONS IN: receptor signaling protein serine/threonine kinase activity%3B INVOLVED IN: in 8 processes%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 16 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Leucine-rich repeat (InterPro:IPR001611)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%3B BEST Arabidopsis thaliana protein match is: STRUBBELIG-receptor family 3 (TAIR:AT4G03390.1)%3B Has 153928 Blast hits to 101875 proteins in 2737 species: Archae - 122%3B Bacteria - 10876%3B Metazoa - 38100%3B Fungi - 7570%3B Plants - 81122%3B Viruses - 718%3B Other Eukaryotes - 15420 (source: NCBI BLink).; Dbxref=PMID:11751054, PMID:15058443, PMID:15618487, PMID:15951420, PMID:16317033, PMID:17027738, PMID:18771664, PMID:19097902, PMID:19180193, PMID:19704725, PMID:19794855, PMID:20298225, PMID:20356954, PMID:21037570, PMID:21379334, PMID:21603601, PMID:22805005, PMID:23368817, PMID:24173806, PMID:24130712, PMID:25136062, PMID:25256344, PMID:25482776, locus:2202084; locus_type=protein_coding
AT1G11145.1	chr1:003727532	0.0	C/3727532-3727636,3727712-3728044,3728116-3728166	AT1G11145.1 CDS AT1G11145 ID=AT1G11145.1; Parent=AT1G11145; Name=AT1G11145.1; Note=hypothetical protein (DUF674); conf_class=10; computational_description=Protein of unknown function (DUF674)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF674 (InterPro:IPR007750)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF674) (TAIR:AT5G01150.1)%3B Has 48 Blast hits to 48 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 48%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=locus:504956153; locus_type=protein_coding
AT1TE12130	chr1:003728505	0.0	W/3728505-3728801	AT1TE12130 transposable_element AT1TE12130 ID=AT1TE12130; Name=AT1TE12130; Alias=ATTIRX1A
AT1TE12135	chr1:003728969	0.0	W/3728969-3730413	AT1TE12135 transposable_element AT1TE12135 ID=AT1TE12135; Name=AT1TE12135; Alias=ATLINE2
AT1G11150.1	chr1:003728971	0.0	W/3728971-3731624	AT1G11150.1 CDS AT1G11150 ID=AT1G11150.1; Parent=AT1G11150; Name=AT1G11150.1; index=1; computational_description=pseudogene%2C similar to putative AP endonuclease/reverse transcriptase%2C blastp match of 30%25 identity and 3.2e-59 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase %7BBrassica napus%7D; Dbxref=locus:2826777; Note=transposable_element_gene; locus_type=transposable_element_gene
AT1G11160.1	chr1:003733406	0.0	W/3733406-3733430,3733797-3733927,3734154-3734271,3734427-3734653,3734739-3734841,3734982-3735052,3735189-3735263,3735351-3735494,3735571-3735730,3736248-3736724,3736812-3737000,3737326-3737382,3737476-3738215,3738317-3738430,3738520-3738594,3738679-3738791,3738895-3739011,3739102-3739170,3739303-3739363	AT1G11160.1 CDS AT1G11160 ID=AT1G11160.1; Parent=AT1G11160; Name=AT1G11160.1; Note=Transducin/WD40 repeat-like superfamily protein; conf_class=6; computational_description=Transducin/WD40 repeat-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782)%2C WD40 repeat%2C conserved site (InterPro:IPR019775)%2C WD40 repeat (InterPro:IPR001680)%2C G-protein beta WD-40 repeat%2C region (InterPro:IPR020472)%2C WD40 repeat-like-containing domain (InterPro:IPR011046)%2C WD40-repeat-containing domain (InterPro:IPR017986)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C WD40 repeat%2C subgroup (InterPro:IPR019781)%3B BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G61210.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:18223036, PMID:18552200, PMID:20736450, locus:2202129; locus_type=protein_coding
AT1G11160.2	chr1:003733406	0.0	W/3733406-3733430,3733797-3733927,3734154-3734271,3734427-3734653,3734739-3734841,3734982-3735052,3735189-3735263,3735351-3735494,3735571-3735730,3736254-3736724,3736812-3737000,3737326-3737382,3737476-3738215,3738317-3738430,3738520-3738594,3738679-3738791,3738895-3739011,3739102-3739170,3739303-3739363	AT1G11160.2 CDS AT1G11160 ID=AT1G11160.2; Parent=AT1G11160; Name=AT1G11160.2; Note=Transducin/WD40 repeat-like superfamily protein; computational_description=Transducin/WD40 repeat-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782)%2C WD40 repeat%2C conserved site (InterPro:IPR019775)%2C WD40 repeat (InterPro:IPR001680)%2C G-protein beta WD-40 repeat%2C region (InterPro:IPR020472)%2C WD40 repeat-like-containing domain (InterPro:IPR011046)%2C WD40-repeat-containing domain (InterPro:IPR017986)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C WD40 repeat%2C subgroup (InterPro:IPR019781)%3B BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G61210.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=PMID:18223036, PMID:18552200, PMID:20736450, locus:2202129; locus_type=protein_coding
AT1G11160.4	chr1:003733406	0.0	W/3733406-3733430,3733797-3733927,3734154-3734271,3734427-3734653,3734739-3734841,3734982-3735052,3735189-3735263,3735351-3735494,3735571-3735730,3736254-3736724,3736812-3737000,3737326-3737382,3737476-3738215,3738317-3738430,3738520-3738594,3738679-3738791,3738895-3739011,3739102-3739174	AT1G11160.4 CDS AT1G11160 ID=AT1G11160.4; Parent=AT1G11160; Name=AT1G11160.4; Note=Transducin/WD40 repeat-like superfamily protein; computational_description=Transducin/WD40 repeat-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782)%2C WD40 repeat%2C conserved site (InterPro:IPR019775)%2C WD40 repeat (InterPro:IPR001680)%2C G-protein beta WD-40 repeat%2C region (InterPro:IPR020472)%2C WD40 repeat-like-containing domain (InterPro:IPR011046)%2C WD40-repeat-containing domain (InterPro:IPR017986)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C WD40 repeat%2C subgroup (InterPro:IPR019781)%3B BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G61210.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=PMID:18223036, PMID:18552200, PMID:20736450, locus:2202129; locus_type=protein_coding
AT1G11160.3	chr1:003734124	0.0	W/3734124-3734271,3734427-3734653,3734739-3734841,3734982-3735052,3735189-3735263,3735351-3735494,3735571-3735730,3736254-3736724,3736812-3737000,3737326-3737382,3737476-3738215,3738317-3738430,3738520-3738594,3738679-3738791,3738895-3739011,3739102-3739170,3739303-3739363	AT1G11160.3 CDS AT1G11160 ID=AT1G11160.3; Parent=AT1G11160; Name=AT1G11160.3; Note=Transducin/WD40 repeat-like superfamily protein; computational_description=Transducin/WD40 repeat-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782)%2C WD40 repeat%2C conserved site (InterPro:IPR019775)%2C WD40 repeat (InterPro:IPR001680)%2C G-protein beta WD-40 repeat%2C region (InterPro:IPR020472)%2C WD40 repeat-like-containing domain (InterPro:IPR011046)%2C WD40-repeat-containing domain (InterPro:IPR017986)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C WD40 repeat%2C subgroup (InterPro:IPR019781)%3B BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G61210.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=PMID:18223036, PMID:18552200, PMID:20736450, locus:2202129; locus_type=protein_coding
AT1G11170.1	chr1:003741724	0.0	W/3741724-3741804,3741903-3742004,3742086-3742121,3742203-3742313,3742404-3742487,3742577-3742695,3742896-3742997,3743072-3743188,3743270-3743335,3743423-3743489,3743580-3743633,3743794-3743886,3743984-3744010,3744113-3744148,3744238-3744459	AT1G11170.1 CDS AT1G11170 ID=AT1G11170.1; Parent=AT1G11170; Name=AT1G11170.1; Note=lysine ketoglutarate reductase trans-splicing-like protein (DUF707); conf_class=2; computational_description=Protein of unknown function (DUF707)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT1G61240.4)%3B Has 308 Blast hits to 308 proteins in 23 species: Archae - 0%3B Bacteria - 5%3B Metazoa - 0%3B Fungi - 0%3B Plants - 300%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, PMID:20736450, locus:2202124; locus_type=protein_coding
AT1G11170.2	chr1:003741724	0.0	W/3741724-3741804,3741903-3742004,3742086-3742121,3742203-3742313,3742404-3742487,3742577-3742695,3742896-3742997,3743072-3743188,3743270-3743335,3743423-3743489,3743580-3743667,3743794-3743828	AT1G11170.2 CDS AT1G11170 ID=AT1G11170.2; Parent=AT1G11170; Name=AT1G11170.2; Note=lysine ketoglutarate reductase trans-splicing-like protein (DUF707); conf_class=6; computational_description=Protein of unknown function (DUF707)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT1G61240.4)%3B Has 308 Blast hits to 308 proteins in 23 species: Archae - 0%3B Bacteria - 5%3B Metazoa - 0%3B Fungi - 0%3B Plants - 300%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:18775970, PMID:20736450, locus:2202124; locus_type=protein_coding
AT1G11170.3	chr1:003741724	0.0	W/3741724-3741804,3741903-3742004,3742086-3742121,3742203-3742313,3742404-3742487,3742577-3742695,3742896-3742997,3743072-3743188,3743270-3743335,3743423-3743489,3743580-3743633,3743794-3743886,3743984-3744070	AT1G11170.3 CDS AT1G11170 ID=AT1G11170.3; Parent=AT1G11170; Name=AT1G11170.3; Note=lysine ketoglutarate reductase trans-splicing-like protein (DUF707); computational_description=Protein of unknown function (DUF707)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT1G61240.4)%3B Has 308 Blast hits to 308 proteins in 23 species: Archae - 0%3B Bacteria - 5%3B Metazoa - 0%3B Fungi - 0%3B Plants - 300%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).; Dbxref=PMID:18775970, PMID:20736450, locus:2202124; locus_type=protein_coding
AT1G11170.4	chr1:003741724	0.0	W/3741724-3741804,3741903-3742004,3742086-3742121,3742203-3742313,3742404-3742487,3742577-3742695,3742896-3742997,3743072-3743188,3743270-3743335,3743423-3743489,3743580-3743633,3743794-3743892	AT1G11170.4 CDS AT1G11170 ID=AT1G11170.4; Parent=AT1G11170; Name=AT1G11170.4; Note=lysine ketoglutarate reductase trans-splicing-like protein (DUF707); computational_description=Protein of unknown function (DUF707)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT1G61240.4)%3B Has 308 Blast hits to 308 proteins in 23 species: Archae - 0%3B Bacteria - 5%3B Metazoa - 0%3B Fungi - 0%3B Plants - 300%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).; Dbxref=PMID:18775970, PMID:20736450, locus:2202124; locus_type=protein_coding
AT1G11170.5	chr1:003741724	0.0	W/3741724-3741804,3741903-3742004,3742086-3742121,3742203-3742313,3742404-3742487,3742577-3742695,3742896-3742997,3743072-3743188,3743270-3743335,3743423-3743489,3743580-3743633,3743794-3743886,3743984-3744010,3744113-3744148,3744238-3744459	AT1G11170.5 CDS AT1G11170 ID=AT1G11170.5; Parent=AT1G11170; Name=AT1G11170.5; Note=lysine ketoglutarate reductase trans-splicing-like protein (DUF707); Dbxref=PMID:18775970, PMID:20736450, locus:2202124; computational_description=Protein of unknown function (DUF707)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT1G61240.4)%3B Has 308 Blast hits to 308 proteins in 23 species: Archae - 0%3B Bacteria - 5%3B Metazoa - 0%3B Fungi - 0%3B Plants - 300%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).; locus_type=protein_coding
AT1G11170.6	chr1:003741724	0.0	W/3741724-3741804,3741903-3742004,3742086-3742121,3742203-3742313,3742404-3742487,3742577-3742695,3742896-3742997,3743072-3743188,3743270-3743335,3743423-3743489,3743580-3743633,3743794-3743886,3743984-3744010,3744113-3744148,3744238-3744459	AT1G11170.6 CDS AT1G11170 ID=AT1G11170.6; Parent=AT1G11170; Name=AT1G11170.6; Note=lysine ketoglutarate reductase trans-splicing-like protein (DUF707); Dbxref=PMID:18775970, PMID:20736450, locus:2202124; computational_description=Protein of unknown function (DUF707)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT1G61240.4)%3B Has 308 Blast hits to 308 proteins in 23 species: Archae - 0%3B Bacteria - 5%3B Metazoa - 0%3B Fungi - 0%3B Plants - 300%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).; locus_type=protein_coding
AT1G11170.7	chr1:003741724	0.0	W/3741724-3741804,3741903-3742004,3742086-3742121,3742203-3742313,3742404-3742487,3742577-3742695,3742896-3742997,3743072-3743188,3743270-3743335,3743423-3743489,3743580-3743633,3743794-3743886,3743984-3744010,3744113-3744148,3744238-3744459	AT1G11170.7 CDS AT1G11170 ID=AT1G11170.7; Parent=AT1G11170; Name=AT1G11170.7; Note=lysine ketoglutarate reductase trans-splicing-like protein (DUF707); Dbxref=PMID:18775970, PMID:20736450, locus:2202124; computational_description=Protein of unknown function (DUF707)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT1G61240.4)%3B Has 308 Blast hits to 308 proteins in 23 species: Archae - 0%3B Bacteria - 5%3B Metazoa - 0%3B Fungi - 0%3B Plants - 300%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).; locus_type=protein_coding
AT1G11170.8	chr1:003741724	0.0	W/3741724-3741804,3741903-3742004,3742086-3742121,3742203-3742313,3742404-3742487,3742577-3742695,3742896-3742997,3743072-3743188,3743270-3743335,3743423-3743489,3743580-3743633,3743794-3743892	AT1G11170.8 CDS AT1G11170 ID=AT1G11170.8; Parent=AT1G11170; Name=AT1G11170.8; Note=lysine ketoglutarate reductase trans-splicing-like protein (DUF707); computational_description=Protein of unknown function (DUF707)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT1G61240.4)%3B Has 308 Blast hits to 308 proteins in 23 species: Archae - 0%3B Bacteria - 5%3B Metazoa - 0%3B Fungi - 0%3B Plants - 300%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).; Dbxref=PMID:18775970, PMID:20736450, locus:2202124; locus_type=protein_coding
AT1G11170.9	chr1:003741724	0.0	W/3741724-3741804,3741903-3742004,3742086-3742121,3742203-3742313,3742404-3742487,3742577-3742695,3742896-3742997,3743072-3743207	AT1G11170.9 CDS AT1G11170 ID=AT1G11170.9; Parent=AT1G11170; Name=AT1G11170.9; Note=lysine ketoglutarate reductase trans-splicing-like protein (DUF707); computational_description=Protein of unknown function (DUF707)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT1G61240.4)%3B Has 308 Blast hits to 308 proteins in 23 species: Archae - 0%3B Bacteria - 5%3B Metazoa - 0%3B Fungi - 0%3B Plants - 300%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).; Dbxref=PMID:18775970, PMID:20736450, locus:2202124; locus_type=protein_coding
AT1G11175.1	chr1:003744858	0.0	W/3744858-3745655	AT1G11175.1 ncRNA AT1G11175 ID=AT1G11175.1; Parent=AT1G11175; Name=AT1G11175.1; index=1; Dbxref=locus:4515102517; Note=other_RNA; locus_type=other_rna
AT1G11180.1	chr1:003745829	0.0	W/3745829-3745888,3746344-3746466,3746570-3746632,3746804-3746837,3746963-3747085,3747217-3747279,3747394-3747487,3747599-3747644,3747751-3747818,3747903-3747951,3748074-3748139,3748221-3748307	AT1G11180.1 CDS AT1G11180 ID=AT1G11180.1; Parent=AT1G11180; Name=AT1G11180.1; Note=Secretory carrier membrane protein (SCAMP) family protein; conf_class=2; symbol=SCAMP2; Alias=AtSCAMP2; full_name=Secretory carrier membrane protein 2; computational_description=Secretory carrier membrane protein (SCAMP) family protein%3B FUNCTIONS IN: transmembrane transporter activity%3B INVOLVED IN: protein transport%3B LOCATED IN: integral to membrane%3B CONTAINS InterPro DOMAIN/s: SCAMP (InterPro:IPR007273)%3B BEST Arabidopsis thaliana protein match is: secretory carrier 3 (TAIR:AT1G61250.1)%3B Has 667 Blast hits to 665 proteins in 105 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 372%3B Fungi - 14%3B Plants - 226%3B Viruses - 0%3B Other Eukaryotes - 55 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14996221, PMID:18650403, PMID:20736450, PMID:21633931, locus:2202119; locus_type=protein_coding
AT1G11180.2	chr1:003745829	0.0	W/3745829-3745888,3746344-3746466,3746531-3746632,3746804-3746837,3746963-3747085,3747217-3747279,3747394-3747487,3747599-3747644,3747751-3747818,3747903-3747951,3748074-3748118,3748221-3748307	AT1G11180.2 CDS AT1G11180 ID=AT1G11180.2; Parent=AT1G11180; Name=AT1G11180.2; Note=Secretory carrier membrane protein (SCAMP) family protein; conf_class=6; symbol=SCAMP2; Alias=AtSCAMP2; full_name=Secretory carrier membrane protein 2; computational_description=Secretory carrier membrane protein (SCAMP) family protein%3B FUNCTIONS IN: transmembrane transporter activity%3B INVOLVED IN: protein transport%3B LOCATED IN: integral to membrane%3B CONTAINS InterPro DOMAIN/s: SCAMP (InterPro:IPR007273)%3B BEST Arabidopsis thaliana protein match is: secretory carrier 3 (TAIR:AT1G61250.1)%3B Has 667 Blast hits to 665 proteins in 105 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 372%3B Fungi - 14%3B Plants - 226%3B Viruses - 0%3B Other Eukaryotes - 55 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:14996221, PMID:18650403, PMID:20736450, PMID:21633931, locus:2202119; locus_type=protein_coding
AT1G11180.3	chr1:003745829	0.0	W/3745829-3745888,3746344-3746466,3746570-3746632,3746804-3746837,3746963-3747085,3747217-3747279,3747394-3747487,3747599-3747644,3747751-3747818,3747903-3747951,3748074-3748118,3748221-3748307	AT1G11180.3 CDS AT1G11180 ID=AT1G11180.3; Parent=AT1G11180; Name=AT1G11180.3; Note=Secretory carrier membrane protein (SCAMP) family protein; symbol=SCAMP2; Alias=AtSCAMP2; full_name=Secretory carrier membrane protein 2; computational_description=Secretory carrier membrane protein (SCAMP) family protein%3B FUNCTIONS IN: transmembrane transporter activity%3B INVOLVED IN: protein transport%3B LOCATED IN: integral to membrane%3B CONTAINS InterPro DOMAIN/s: SCAMP (InterPro:IPR007273)%3B BEST Arabidopsis thaliana protein match is: secretory carrier 3 (TAIR:AT1G61250.1)%3B Has 667 Blast hits to 665 proteins in 105 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 372%3B Fungi - 14%3B Plants - 226%3B Viruses - 0%3B Other Eukaryotes - 55 (source: NCBI BLink).; Dbxref=PMID:14996221, PMID:18650403, PMID:20736450, PMID:21633931, locus:2202119; locus_type=protein_coding
AT1G11185.1	chr1:003749510	0.0	W/3749510-3750035	AT1G11185.1 ncRNA AT1G11185 ID=AT1G11185.1; Parent=AT1G11185; Name=AT1G11185.1; index=1; curator_summary=Unknown gene; Dbxref=locus:4010713431; Note=other_RNA; locus_type=other_rna
AT1G11190.1	chr1:003750338	0.0	C/3750338-3750465,3750667-3750740,3751219-3751283,3751354-3751449,3751534-3751617,3751720-3751775,3751898-3752005,3752115-3752295,3752571-3752696	AT1G11190.1 CDS AT1G11190 ID=AT1G11190.1; Parent=AT1G11190; Name=AT1G11190.1; Note=bifunctional nuclease i; curator_summary=Encodes a bifunctional nuclease that acts on both RNA and DNA involved in nucleic acid degradation to facilitate nucleotide and phosphate recovery during senescence. It has mismatch-specific endonuclease activity with wide recognition of single base mismatches as well as the ability to cleave indel types of mismatches (heteroduplexes with loops).; conf_class=1; symbol=BFN1; Alias=ENDO1, ENDONUCLEASE 1; full_name=bifunctional nuclease i; computational_description=bifunctional nuclease i (BFN1)%3B FUNCTIONS IN: T/G mismatch-specific endonuclease activity%2C endoribonuclease activity%2C producing 5'-phosphomonoesters%2C single-stranded DNA specific endodeoxyribonuclease activity%2C nucleic acid binding%3B INVOLVED IN: DNA catabolic process%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 18 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Phospholipase C/P1 nuclease%2C core (InterPro:IPR008947)%2C S1/P1 nuclease (InterPro:IPR003154)%3B BEST Arabidopsis thaliana protein match is: endonuclease 4 (TAIR:AT4G21585.1)%3B Has 701 Blast hits to 698 proteins in 200 species: Archae - 0%3B Bacteria - 187%3B Metazoa - 0%3B Fungi - 98%3B Plants - 121%3B Viruses - 4%3B Other Eukaryotes - 291 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:10736152, PMID:10631260, PMID:15574398, PMID:15860015, PMID:15894741, PMID:16081527, PMID:16214898, PMID:17651368, PMID:17890373, PMID:18433472, PMID:18539778, PMID:18603613, PMID:20736450, PMID:24634485, locus:2202114; locus_type=protein_coding
AT1G11200.1	chr1:003753896	0.0	W/3753896-3754162,3754267-3754680,3755253-3755459	AT1G11200.1 CDS AT1G11200 ID=AT1G11200.1; Parent=AT1G11200; Name=AT1G11200.1; Note=organic solute transporter ostalpha protein (DUF300); conf_class=2; computational_description=Protein of unknown function (DUF300)%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF300 (InterPro:IPR005178)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF300) (TAIR:AT4G21570.1)%3B Has 839 Blast hits to 837 proteins in 192 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 285%3B Fungi - 195%3B Plants - 241%3B Viruses - 0%3B Other Eukaryotes - 118 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17064408, PMID:18218973, PMID:18650403, PMID:20736450, locus:2202104; locus_type=protein_coding
AT1G11210.1	chr1:003755876	0.0	C/3755876-3756261,3756371-3756911	AT1G11210.1 CDS AT1G11210 ID=AT1G11210.1; Parent=AT1G11210; Name=AT1G11210.1; Note=cotton fiber protein%2C putative (DUF761); conf_class=2; computational_description=Protein of unknown function (DUF761)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: response to oxidative stress%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 10 plant structures%3B EXPRESSED DURING: LP.06 six leaves visible%2C LP.04 four leaves visible%2C 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF761%2C plant (InterPro:IPR008480)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF761) (TAIR:AT1G11220.1)%3B Has 74 Blast hits to 74 proteins in 12 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 70%3B Viruses - 0%3B Other Eukaryotes - 4 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15215506, PMID:17316173, PMID:17888165, PMID:18614705, PMID:20736450, locus:2202094; locus_type=protein_coding
AT1TE12220	chr1:003757423	0.0	W/3757423-3758040	AT1TE12220 transposable_element AT1TE12220 ID=AT1TE12220; Name=AT1TE12220; Alias=HELITRONY3
AT1G11220.1	chr1:003760022	0.0	C/3760022-3760374,3760586-3761165	AT1G11220.1 CDS AT1G11220 ID=AT1G11220.1; Parent=AT1G11220; Name=AT1G11220.1; Note=cotton fiber%2C putative (DUF761); conf_class=2; computational_description=Protein of unknown function (DUF761)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: shoot apex%2C embryo%2C leaf whorl%2C flower%2C seed%3B EXPRESSED DURING: F mature embryo stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF761%2C plant (InterPro:IPR008480)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF761) (TAIR:AT1G11230.1)%3B Has 88 Blast hits to 87 proteins in 12 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 88%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:20736450, locus:2202079; locus_type=protein_coding
AT1G11220.2	chr1:003760022	0.0	C/3760022-3760374,3760586-3761210	AT1G11220.2 CDS AT1G11220 ID=AT1G11220.2; Parent=AT1G11220; Name=AT1G11220.2; Note=cotton fiber%2C putative (DUF761); computational_description=Protein of unknown function (DUF761)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: shoot apex%2C embryo%2C leaf whorl%2C flower%2C seed%3B EXPRESSED DURING: F mature embryo stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF761%2C plant (InterPro:IPR008480)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF761) (TAIR:AT1G11230.1)%3B Has 88 Blast hits to 87 proteins in 12 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 88%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=PMID:20736450, locus:2202079; locus_type=protein_coding
AT1TE12230	chr1:003761903	0.0	W/3761903-3762819	AT1TE12230 transposable_element AT1TE12230 ID=AT1TE12230; Name=AT1TE12230; Alias=HELITRONY1E
AT1TE12235	chr1:003762820	0.0	W/3762820-3762974	AT1TE12235 transposable_element AT1TE12235 ID=AT1TE12235; Name=AT1TE12235; Alias=ATREP1
AT1TE12240	chr1:003762975	0.0	W/3762975-3763156	AT1TE12240 transposable_element AT1TE12240 ID=AT1TE12240; Name=AT1TE12240; Alias=ATREP2
AT1G11230.1	chr1:003763439	0.0	C/3763439-3763785,3763906-3764464	AT1G11230.1 CDS AT1G11230 ID=AT1G11230.1; Parent=AT1G11230; Name=AT1G11230.1; Note=transmembrane protein%2C putative (DUF761); conf_class=1; computational_description=Protein of unknown function (DUF761)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF761%2C plant (InterPro:IPR008480)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF761) (TAIR:AT1G11220.1)%3B Has 73 Blast hits to 72 proteins in 12 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1%3B Fungi - 0%3B Plants - 72%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:20736450, locus:2202109; locus_type=protein_coding
AT1G11230.2	chr1:003763439	0.0	C/3763439-3764464	AT1G11230.2 CDS AT1G11230 ID=AT1G11230.2; Parent=AT1G11230; Name=AT1G11230.2; Note=transmembrane protein%2C putative (DUF761); conf_class=1; computational_description=Protein of unknown function (DUF761)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF761%2C plant (InterPro:IPR008480)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF761) (TAIR:AT1G11220.1)%3B Has 73 Blast hits to 72 proteins in 12 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1%3B Fungi - 0%3B Plants - 72%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:20736450, locus:2202109; locus_type=protein_coding
AT1G11240.1	chr1:003766936	0.0	C/3766936-3767192,3767406-3767520,3767885-3767990,3768088-3768212	AT1G11240.1 CDS AT1G11240 ID=AT1G11240.1; Parent=AT1G11240; Name=AT1G11240.1; Note=ribosomal RNA-processing protein; conf_class=1; computational_description=CONTAINS InterPro DOMAIN/s: Nucleolar protein 12 (InterPro:IPR019186)%3B Has 2484 Blast hits to 1934 proteins in 262 species: Archae - 0%3B Bacteria - 90%3B Metazoa - 921%3B Fungi - 378%3B Plants - 144%3B Viruses - 18%3B Other Eukaryotes - 933 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:18315867, PMID:18650403, PMID:18775970, locus:2202059; locus_type=protein_coding
AT1G11250.1	chr1:003768724	0.0	W/3768724-3769187,3769274-3769706	AT1G11250.1 CDS AT1G11250 ID=AT1G11250.1; Parent=AT1G11250; Name=AT1G11250.1; Note=syntaxin of plants 125; curator_summary=member of SYP12 Gene Family; conf_class=1; symbol=SYP125; Alias=ATSYP125; full_name=syntaxin of plants 125; computational_description=syntaxin of plants 125 (SYP125)%3B FUNCTIONS IN: SNAP receptor activity%3B INVOLVED IN: intracellular protein transport%2C cellular membrane fusion%3B LOCATED IN: membrane%3B EXPRESSED IN: 6 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727)%2C t-SNARE (InterPro:IPR010989)%2C Syntaxin/epimorphin%2C conserved site (InterPro:IPR006012)%2C Syntaxin%2C N-terminal (InterPro:IPR006011)%3B BEST Arabidopsis thaliana protein match is: syntaxin of plants 124 (TAIR:AT1G61290.1)%3B Has 2564 Blast hits to 2556 proteins in 299 species: Archae - 11%3B Bacteria - 67%3B Metazoa - 1171%3B Fungi - 457%3B Plants - 455%3B Viruses - 0%3B Other Eukaryotes - 403 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11115874, PMID:15342965, PMID:18775970, PMID:19933386, PMID:20118666, PMID:21499026, locus:2202049; locus_type=protein_coding
AT1TE12270	chr1:003770969	0.0	C/3770969-3771002	AT1TE12270 transposable_element AT1TE12270 ID=AT1TE12270; Name=AT1TE12270; Alias=ATREP10D
AT1TE12275	chr1:003771003	0.0	C/3771003-3772133	AT1TE12275 transposable_element AT1TE12275 ID=AT1TE12275; Name=AT1TE12275; Alias=ATREP10D
AT1TE12280	chr1:003774282	0.0	W/3774282-3774495	AT1TE12280 transposable_element AT1TE12280 ID=AT1TE12280; Name=AT1TE12280; Alias=ATMUN1
AT1TE12285	chr1:003775143	0.0	W/3775143-3775241	AT1TE12285 transposable_element AT1TE12285 ID=AT1TE12285; Name=AT1TE12285; Alias=ATMUN1
AT1G11260.1	chr1:003777460	0.0	W/3777460-3777592,3777900-3778222,3778929-3779558,3779651-3780133	AT1G11260.1 CDS AT1G11260 ID=AT1G11260.1; Parent=AT1G11260; Name=AT1G11260.1; Note=sugar transporter 1; curator_summary=Encodes a H+/hexose cotransporter.; conf_class=2; symbol=STP1; Alias=ATSTP1, SUGAR TRANSPORTER 1; full_name=sugar transporter 1; computational_description=sugar transporter 1 (STP1)%3B FUNCTIONS IN: carbohydrate transmembrane transporter activity%2C sugar:hydrogen symporter activity%3B INVOLVED IN: transport%2C transmembrane transport%3B LOCATED IN: nucleus%2C plasma membrane%2C vacuole%2C membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Sugar transporter%2C conserved site (InterPro:IPR005829)%2C Major facilitator superfamily (InterPro:IPR020846)%2C General substrate transporter (InterPro:IPR005828)%2C Sugar/inositol transporter (InterPro:IPR003663)%2C Major facilitator superfamily%2C general substrate transporter (InterPro:IPR016196)%3B BEST Arabidopsis thaliana protein match is: sugar transporter protein 12 (TAIR:AT4G21480.1)%3B Has 29569 Blast hits to 28978 proteins in 2050 species: Archae - 503%3B Bacteria - 13950%3B Metazoa - 4366%3B Fungi - 6940%3B Plants - 2466%3B Viruses - 2%3B Other Eukaryotes - 1342 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:8051137, PMID:7920712, PMID:7597641, PMID:1633849, PMID:2209537, PMID:11135118, PMID:12508063, PMID:12972665, PMID:16212609, PMID:16916444, PMID:17882353, PMID:18433157, PMID:18650403, PMID:18702670, PMID:19291320, PMID:19900291, PMID:20101436, PMID:20736450, PMID:22041897, PMID:25281700, locus:2202044; locus_type=protein_coding
AT1TE12295	chr1:003780765	0.0	W/3780765-3785721	AT1TE12295 transposable_element AT1TE12295 ID=AT1TE12295; Name=AT1TE12295; Alias=ATCOPIA78
AT1G11265.1	chr1:003781235	0.0	W/3781235-3785293	AT1G11265.1 CDS AT1G11265 ID=AT1G11265.1; Parent=AT1G11265; Name=AT1G11265.1; index=1; computational_description=copia-like retrotransposon family%2C has a 3.4e-253 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family); Dbxref=locus:2826783; Note=transposable_element_gene; locus_type=transposable_element_gene
AT1G11270.1	chr1:003785715	0.0	C/3785715-3786653	AT1G11270.1 CDS AT1G11270 ID=AT1G11270.1; Parent=AT1G11270; Name=AT1G11270.1; Note=F-box and associated interaction domains-containing protein; conf_class=1; computational_description=F-box and associated interaction domains-containing protein%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%2C F-box associated domain%2C type 1 (InterPro:IPR006527)%3B BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT2G34280.1)%3B Has 1191 Blast hits to 1176 proteins in 49 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1189%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16807682, PMID:20736450, locus:2202099; locus_type=protein_coding
AT1G11270.2	chr1:003785715	0.0	C/3785715-3786653	AT1G11270.2 CDS AT1G11270 ID=AT1G11270.2; Parent=AT1G11270; Name=AT1G11270.2; Note=F-box and associated interaction domains-containing protein; conf_class=2; computational_description=F-box and associated interaction domains-containing protein%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%2C F-box associated domain%2C type 1 (InterPro:IPR006527)%3B BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT2G34280.1)%3B Has 1191 Blast hits to 1176 proteins in 49 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1189%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16807682, PMID:20736450, locus:2202099; locus_type=protein_coding
AT1G11270.3	chr1:003785833	0.0	C/3785833-3785848,3785998-3786653	AT1G11270.3 CDS AT1G11270 ID=AT1G11270.3; Parent=AT1G11270; Name=AT1G11270.3; Note=F-box and associated interaction domains-containing protein; conf_class=2; computational_description=F-box and associated interaction domains-containing protein%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%2C F-box associated domain%2C type 1 (InterPro:IPR006527)%3B BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT2G34280.1)%3B Has 1191 Blast hits to 1176 proteins in 49 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1189%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16807682, PMID:20736450, locus:2202099; locus_type=protein_coding
AT1G11280.1	chr1:003787456	0.0	C/3787456-3787755,3787835-3787985,3788070-3788307,3788410-3788620,3788706-3788878,3789119-3789226,3789340-3790647,3790725-3790728	AT1G11280.1 CDS AT1G11280 ID=AT1G11280.1; Parent=AT1G11280; Name=AT1G11280.1; Note=S-locus lectin protein kinase family protein; conf_class=3; computational_description=S-locus lectin protein kinase family protein%3B FUNCTIONS IN: in 6 functions%3B INVOLVED IN: protein amino acid phosphorylation%2C recognition of pollen%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480)%2C PAN-2 domain (InterPro:IPR013227)%2C Apple-like (InterPro:IPR003609)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C S-locus glycoprotein (InterPro:IPR000858)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%3B BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT1G61480.1)%3B Has 119990 Blast hits to 118206 proteins in 4416 species: Archae - 104%3B Bacteria - 13409%3B Metazoa - 44077%3B Fungi - 9917%3B Plants - 34701%3B Viruses - 420%3B Other Eukaryotes - 17362 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17540731, PMID:18650403, PMID:18775970, PMID:20736450, PMID:21477822, locus:2202089; locus_type=protein_coding
AT1G11280.2	chr1:003787456	0.0	C/3787456-3787755,3787835-3787985,3788070-3788307,3788410-3788620,3788706-3788878,3789119-3789226,3789340-3790621	AT1G11280.2 CDS AT1G11280 ID=AT1G11280.2; Parent=AT1G11280; Name=AT1G11280.2; Note=S-locus lectin protein kinase family protein; conf_class=3; computational_description=S-locus lectin protein kinase family protein%3B FUNCTIONS IN: in 6 functions%3B INVOLVED IN: protein amino acid phosphorylation%2C recognition of pollen%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480)%2C PAN-2 domain (InterPro:IPR013227)%2C Apple-like (InterPro:IPR003609)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C S-locus glycoprotein (InterPro:IPR000858)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%3B BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT1G61480.1)%3B Has 119990 Blast hits to 118206 proteins in 4416 species: Archae - 104%3B Bacteria - 13409%3B Metazoa - 44077%3B Fungi - 9917%3B Plants - 34701%3B Viruses - 420%3B Other Eukaryotes - 17362 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17540731, PMID:18650403, PMID:18775970, PMID:20736450, PMID:21477822, locus:2202089; locus_type=protein_coding
AT1G11280.3	chr1:003787456	0.0	C/3787456-3787755,3787835-3787985,3788070-3788307,3788410-3788620,3788706-3788842,3789119-3789226,3789340-3790621	AT1G11280.3 CDS AT1G11280 ID=AT1G11280.3; Parent=AT1G11280; Name=AT1G11280.3; Note=S-locus lectin protein kinase family protein; conf_class=3; computational_description=S-locus lectin protein kinase family protein%3B FUNCTIONS IN: in 6 functions%3B INVOLVED IN: protein amino acid phosphorylation%2C recognition of pollen%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480)%2C PAN-2 domain (InterPro:IPR013227)%2C Apple-like (InterPro:IPR003609)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C S-locus glycoprotein (InterPro:IPR000858)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%3B BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT1G61480.1)%3B Has 119990 Blast hits to 118206 proteins in 4416 species: Archae - 104%3B Bacteria - 13409%3B Metazoa - 44077%3B Fungi - 9917%3B Plants - 34701%3B Viruses - 420%3B Other Eukaryotes - 17362 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17540731, PMID:18650403, PMID:18775970, PMID:20736450, PMID:21477822, locus:2202089; locus_type=protein_coding
AT1G11280.4	chr1:003787456	0.0	C/3787456-3787755,3787835-3787985,3788070-3788307,3788410-3788620,3788706-3788842,3789119-3789226,3789340-3790647,3790725-3790728	AT1G11280.4 CDS AT1G11280 ID=AT1G11280.4; Parent=AT1G11280; Name=AT1G11280.4; Note=S-locus lectin protein kinase family protein; conf_class=3; computational_description=S-locus lectin protein kinase family protein%3B FUNCTIONS IN: in 6 functions%3B INVOLVED IN: protein amino acid phosphorylation%2C recognition of pollen%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480)%2C PAN-2 domain (InterPro:IPR013227)%2C Apple-like (InterPro:IPR003609)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C S-locus glycoprotein (InterPro:IPR000858)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%3B BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT1G61480.1)%3B Has 119990 Blast hits to 118206 proteins in 4416 species: Archae - 104%3B Bacteria - 13409%3B Metazoa - 44077%3B Fungi - 9917%3B Plants - 34701%3B Viruses - 420%3B Other Eukaryotes - 17362 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17540731, PMID:18650403, PMID:18775970, PMID:20736450, PMID:21477822, locus:2202089; locus_type=protein_coding
AT1G11280.5	chr1:003787968	0.0	C/3787968-3787985,3788084-3788307,3788410-3788620,3788706-3788878,3789119-3789226,3789340-3790621	AT1G11280.5 CDS AT1G11280 ID=AT1G11280.5; Parent=AT1G11280; Name=AT1G11280.5; Note=S-locus lectin protein kinase family protein; computational_description=S-locus lectin protein kinase family protein%3B FUNCTIONS IN: in 6 functions%3B INVOLVED IN: protein amino acid phosphorylation%2C recognition of pollen%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480)%2C PAN-2 domain (InterPro:IPR013227)%2C Apple-like (InterPro:IPR003609)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C S-locus glycoprotein (InterPro:IPR000858)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%3B BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT1G61480.1)%3B Has 119990 Blast hits to 118206 proteins in 4416 species: Archae - 104%3B Bacteria - 13409%3B Metazoa - 44077%3B Fungi - 9917%3B Plants - 34701%3B Viruses - 420%3B Other Eukaryotes - 17362 (source: NCBI BLink).; Dbxref=PMID:17540731, PMID:18650403, PMID:18775970, PMID:20736450, PMID:21477822, locus:2202089; locus_type=protein_coding
AT1TE12305	chr1:003790753	0.0	W/3790753-3790843	AT1TE12305 transposable_element AT1TE12305 ID=AT1TE12305; Name=AT1TE12305; Alias=ATCOPIA46
AT1TE12310	chr1:003790844	0.0	C/3790844-3790907	AT1TE12310 transposable_element AT1TE12310 ID=AT1TE12310; Name=AT1TE12310; Alias=ATCOPIA46
AT1G11290.1	chr1:003791454	0.0	C/3791454-3793883	AT1G11290.1 CDS AT1G11290 ID=AT1G11290.1; Parent=AT1G11290; Name=AT1G11290.1; Note=Pentatricopeptide repeat (PPR) superfamily protein; curator_summary=Pentatricopeptide Repeat Protein containing the DYW motif. Required for editing of multiple plastid transcripts. Endonuclease activity.; conf_class=4; symbol=CRR22; full_name=CHLORORESPIRATORY REDUCTION22; computational_description=CHLORORESPIRATORY REDUCTION22 (CRR22)%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57430.1)%3B Has 48258 Blast hits to 14436 proteins in 289 species: Archae - 1%3B Bacteria - 2%3B Metazoa - 166%3B Fungi - 164%3B Plants - 47192%3B Viruses - 0%3B Other Eukaryotes - 733 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:14576160, PMID:19182104, PMID:19934379, PMID:20736450, locus:2202074; locus_type=protein_coding
AT1G11300.1	chr1:003794389	0.0	W/3794389-3795676,3795766-3795873,3795955-3796133,3796218-3796428,3796511-3796748,3796829-3796958,3797038-3797346	AT1G11300.1 CDS AT1G11300 ID=AT1G11300.1; Parent=AT1G11300; Name=AT1G11300.1; Note=G-type lectin S-receptor-like Serine/Threonine-kinase; curator_summary=The annotation for At1g11300 in TAIR10 is incorrect. This locus has been split into two At1g11300 (symbol: EGM1) and At1g11305 (symbol: EGM2) (Olivier Loudet%2C personal communication%2C 2013-04-03). See Comment field for revised annotation.; conf_class=6; Alias=EGM1, enhanced shoot growth under mannitol stress 1; computational_description=protein serine/threonine kinases%3Bprotein kinases%3BATP binding%3Bsugar binding%3Bkinases%3Bcarbohydrate binding%3B FUNCTIONS IN: in 6 functions%3B INVOLVED IN: protein amino acid phosphorylation%2C recognition of pollen%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480)%2C Apple-like (InterPro:IPR003609)%2C PAN-2 domain (InterPro:IPR013227)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C S-locus glycoprotein (InterPro:IPR000858)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%3B BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT1G11330.2)%3B Has 247442 Blast hits to 123826 proteins in 4585 species: Archae - 216%3B Bacteria - 26920%3B Metazoa - 91063%3B Fungi - 20518%3B Plants - 70734%3B Viruses - 831%3B Other Eukaryotes - 37160 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:14576160, PMID:16843620, PMID:24479634, locus:2202069; locus_type=protein_coding
AT1G11300.2	chr1:003794389	0.0	W/3794389-3795676,3795811-3795873,3795955-3796133,3796218-3796428,3796511-3796748,3796829-3796958,3797038-3797346	AT1G11300.2 CDS AT1G11300 ID=AT1G11300.2; Parent=AT1G11300; Name=AT1G11300.2; Note=G-type lectin S-receptor-like Serine/Threonine-kinase; Alias=EGM1, enhanced shoot growth under mannitol stress 1; curator_summary=The annotation for At1g11300 in TAIR10 is incorrect. This locus has been split into two At1g11300 (symbol: EGM1) and At1g11305 (symbol: EGM2) (Olivier Loudet%2C personal communication%2C 2013-04-03). See Comment field for revised annotation.; computational_description=protein serine/threonine kinases%3Bprotein kinases%3BATP binding%3Bsugar binding%3Bkinases%3Bcarbohydrate binding%3B FUNCTIONS IN: in 6 functions%3B INVOLVED IN: protein amino acid phosphorylation%2C recognition of pollen%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480)%2C Apple-like (InterPro:IPR003609)%2C PAN-2 domain (InterPro:IPR013227)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C S-locus glycoprotein (InterPro:IPR000858)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%3B BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT1G11330.2)%3B Has 247442 Blast hits to 123826 proteins in 4585 species: Archae - 216%3B Bacteria - 26920%3B Metazoa - 91063%3B Fungi - 20518%3B Plants - 70734%3B Viruses - 831%3B Other Eukaryotes - 37160 (source: NCBI BLink).; Dbxref=PMID:14576160, PMID:16843620, PMID:24479634, locus:2202069; locus_type=protein_coding
AT1G11303.1	chr1:003797769	0.0	W/3797769-3799056,3799147-3799254,3799336-3799514,3799586-3799796,3799880-3800117,3800202-3800331,3800411-3800719	AT1G11303.1 CDS AT1G11303 ID=AT1G11303.1; Parent=AT1G11303; Name=AT1G11303.1; Note=G-type lectin S-receptor-like Serine/Threonine-kinase; locus_type=protein_coding
AT1G11310.1	chr1:003800899	0.0	C/3800899-3801306,3801400-3801460,3801550-3801617,3801703-3801738,3801829-3802002,3802082-3802122,3802209-3802258,3802345-3802439,3802523-3802686,3802757-3802817,3802911-3803027,3803121-3803386,3803502-3803559,3803748-3803870	AT1G11310.1 CDS AT1G11310 ID=AT1G11310.1; Parent=AT1G11310; Name=AT1G11310.1; Note=Seven transmembrane MLO family protein; curator_summary=A member of a large family of seven-transmembrane domain proteins specific to plants%2C homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins%2C with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO2 belongs to the clade IV%2C with AtMLO3%2C AtMLO6 and AtMLO12. The gene is expressed during early seedling growth%2C in roots%2C in vascular system of cotyledons and young leaves%2Cand in fruit abscission zone%3B it was not expressed in anthers and pollen%2C as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli%2C suggesting functional redundancy%2C co-function%2C or antagonistic function(s). mlo resistance in A. thaliana does not involve the signaling molecules ethylene%2C jasmonic acid or salicylic acid%2C but requires a syntaxin%2C glycosyl hydrolase and ABC transporter.; conf_class=4; symbol=MLO2; Alias=ATMLO2, MILDEW RESISTANCE LOCUS O 2, PMR2, POWDERY MILDEW RESISTANT 2; full_name=MILDEW RESISTANCE LOCUS O 2; computational_description=MILDEW RESISTANCE LOCUS O 2 (MLO2)%3B FUNCTIONS IN: calmodulin binding%3B INVOLVED IN: defense response to fungus%2C incompatible interaction%2C cell death%2C response to fungus%2C negative regulation of defense response%2C defense response%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 29 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Mlo-related protein (InterPro:IPR004326)%3B BEST Arabidopsis thaliana protein match is: Seven transmembrane MLO family protein (TAIR:AT1G61560.1)%3B Has 559 Blast hits to 538 proteins in 60 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1%3B Fungi - 2%3B Plants - 551%3B Viruses - 0%3B Other Eukaryotes - 5 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:10677553, PMID:8662738, PMID:12569425, PMID:16525893, PMID:16732289, PMID:18052880, PMID:18650403, PMID:19602625, PMID:19773385, PMID:20023151, PMID:21098265, PMID:22230763, PMID:22355686, PMID:23279965, PMID:23819806, PMID:23924716, locus:2202064; locus_type=protein_coding
AT1G11310.3	chr1:003800899	0.0	C/3800899-3801306,3801400-3801460,3801550-3801617,3801703-3801738,3801829-3802002,3802082-3802122,3802209-3802258,3802345-3802439,3802523-3802686,3802757-3802817,3802911-3803027,3803121-3803381	AT1G11310.3 CDS AT1G11310 ID=AT1G11310.3; Parent=AT1G11310; Name=AT1G11310.3; Note=Seven transmembrane MLO family protein; symbol=MLO2; Alias=ATMLO2, MILDEW RESISTANCE LOCUS O 2, PMR2, POWDERY MILDEW RESISTANT 2; full_name=MILDEW RESISTANCE LOCUS O 2; curator_summary=A member of a large family of seven-transmembrane domain proteins specific to plants%2C homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins%2C with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO2 belongs to the clade IV%2C with AtMLO3%2C AtMLO6 and AtMLO12. The gene is expressed during early seedling growth%2C in roots%2C in vascular system of cotyledons and young leaves%2Cand in fruit abscission zone%3B it was not expressed in anthers and pollen%2C as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli%2C suggesting functional redundancy%2C co-function%2C or antagonistic function(s). mlo resistance in A. thaliana does not involve the signaling molecules ethylene%2C jasmonic acid or salicylic acid%2C but requires a syntaxin%2C glycosyl hydrolase and ABC transporter.; computational_description=MILDEW RESISTANCE LOCUS O 2 (MLO2)%3B FUNCTIONS IN: calmodulin binding%3B INVOLVED IN: defense response to fungus%2C incompatible interaction%2C cell death%2C response to fungus%2C negative regulation of defense response%2C defense response%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 29 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Mlo-related protein (InterPro:IPR004326)%3B BEST Arabidopsis thaliana protein match is: Seven transmembrane MLO family protein (TAIR:AT1G61560.1)%3B Has 559 Blast hits to 538 proteins in 60 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1%3B Fungi - 2%3B Plants - 551%3B Viruses - 0%3B Other Eukaryotes - 5 (source: NCBI BLink).; Dbxref=PMID:10677553, PMID:8662738, PMID:12569425, PMID:16525893, PMID:16732289, PMID:18052880, PMID:18650403, PMID:19602625, PMID:19773385, PMID:20023151, PMID:21098265, PMID:22230763, PMID:22355686, PMID:23279965, PMID:23819806, PMID:23924716, locus:2202064; locus_type=protein_coding
AT1G11310.2	chr1:003801546	0.0	C/3801546-3801617,3801703-3801738,3801829-3802002,3802082-3802122,3802209-3802258,3802345-3802439,3802523-3802686,3802757-3802817,3802911-3803027,3803121-3803386,3803502-3803559,3803748-3803870	AT1G11310.2 CDS AT1G11310 ID=AT1G11310.2; Parent=AT1G11310; Name=AT1G11310.2; Note=Seven transmembrane MLO family protein; curator_summary=A member of a large family of seven-transmembrane domain proteins specific to plants%2C homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins%2C with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO2 belongs to the clade IV%2C with AtMLO3%2C AtMLO6 and AtMLO12. The gene is expressed during early seedling growth%2C in roots%2C in vascular system of cotyledons and young leaves%2Cand in fruit abscission zone%3B it was not expressed in anthers and pollen%2C as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli%2C suggesting functional redundancy%2C co-function%2C or antagonistic function(s). mlo resistance in A. thaliana does not involve the signaling molecules ethylene%2C jasmonic acid or salicylic acid%2C but requires a syntaxin%2C glycosyl hydrolase and ABC transporter.; conf_class=2; symbol=MLO2; Alias=ATMLO2, MILDEW RESISTANCE LOCUS O 2, PMR2, POWDERY MILDEW RESISTANT 2; full_name=MILDEW RESISTANCE LOCUS O 2; computational_description=MILDEW RESISTANCE LOCUS O 2 (MLO2)%3B FUNCTIONS IN: calmodulin binding%3B INVOLVED IN: defense response to fungus%2C incompatible interaction%2C cell death%2C response to fungus%2C negative regulation of defense response%2C defense response%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 29 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Mlo-related protein (InterPro:IPR004326)%3B BEST Arabidopsis thaliana protein match is: Seven transmembrane MLO family protein (TAIR:AT1G61560.1)%3B Has 559 Blast hits to 538 proteins in 60 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1%3B Fungi - 2%3B Plants - 551%3B Viruses - 0%3B Other Eukaryotes - 5 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10677553, PMID:8662738, PMID:12569425, PMID:16525893, PMID:16732289, PMID:18052880, PMID:18650403, PMID:19602625, PMID:19773385, PMID:20023151, PMID:21098265, PMID:22230763, PMID:22355686, PMID:23279965, PMID:23819806, PMID:23924716, locus:2202064; locus_type=protein_coding
AT1G11320.1	chr1:003807241	0.0	W/3807241-3807351,3807463-3807930,3808033-3808728	AT1G11320.1 CDS AT1G11320 ID=AT1G11320.1; Parent=AT1G11320; Name=AT1G11320.1; Note=GDSL esterase/lipase; conf_class=2; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: mitochondrion%2C plastid%3B EXPRESSED IN: 7 plant structures%3B EXPRESSED DURING: C globular stage%2C F mature embryo stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%2C D bilateral stage%3B Has 46 Blast hits to 46 proteins in 14 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 0%3B Fungi - 0%3B Plants - 44%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16618929, locus:2202134; locus_type=protein_coding
AT1G11330.1	chr1:003810372	0.0	W/3810372-3811689,3811784-3811891,3811985-3812172,3812259-3812469,3812568-3812805,3812876-3813026,3813108-3813416	AT1G11330.1 CDS AT1G11330 ID=AT1G11330.1; Parent=AT1G11330; Name=AT1G11330.1; Note=S-locus lectin protein kinase family protein; conf_class=2; computational_description=S-locus lectin protein kinase family protein%3B FUNCTIONS IN: in 6 functions%3B INVOLVED IN: protein amino acid phosphorylation%2C recognition of pollen%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480)%2C PAN-2 domain (InterPro:IPR013227)%2C Apple-like (InterPro:IPR003609)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C S-locus glycoprotein (InterPro:IPR000858)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%3B BEST Arabidopsis thaliana protein match is: S-domain-1 13 (TAIR:AT1G11350.1)%3B Has 124566 Blast hits to 122714 proteins in 4439 species: Archae - 108%3B Bacteria - 13570%3B Metazoa - 45533%3B Fungi - 10903%3B Plants - 35507%3B Viruses - 467%3B Other Eukaryotes - 18478 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15272873, PMID:16618929, PMID:18650403, PMID:20736450, locus:2202054; locus_type=protein_coding
AT1G11330.2	chr1:003810372	0.0	W/3810372-3811689,3811784-3811891,3811979-3812172,3812259-3812469,3812568-3812805,3812876-3813026,3813108-3813416	AT1G11330.2 CDS AT1G11330 ID=AT1G11330.2; Parent=AT1G11330; Name=AT1G11330.2; Note=S-locus lectin protein kinase family protein; conf_class=4; computational_description=S-locus lectin protein kinase family protein%3B FUNCTIONS IN: in 6 functions%3B INVOLVED IN: protein amino acid phosphorylation%2C recognition of pollen%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480)%2C PAN-2 domain (InterPro:IPR013227)%2C Apple-like (InterPro:IPR003609)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C S-locus glycoprotein (InterPro:IPR000858)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%3B BEST Arabidopsis thaliana protein match is: S-domain-1 13 (TAIR:AT1G11350.1)%3B Has 124566 Blast hits to 122714 proteins in 4439 species: Archae - 108%3B Bacteria - 13570%3B Metazoa - 45533%3B Fungi - 10903%3B Plants - 35507%3B Viruses - 467%3B Other Eukaryotes - 18478 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:15272873, PMID:16618929, PMID:18650403, PMID:20736450, locus:2202054; locus_type=protein_coding
AT1G11330.3	chr1:003810372	0.0	W/3810372-3811689,3811784-3811891,3811979-3812172,3812259-3812469,3812568-3812805,3812876-3813053	AT1G11330.3 CDS AT1G11330 ID=AT1G11330.3; Parent=AT1G11330; Name=AT1G11330.3; Note=S-locus lectin protein kinase family protein; computational_description=S-locus lectin protein kinase family protein%3B FUNCTIONS IN: in 6 functions%3B INVOLVED IN: protein amino acid phosphorylation%2C recognition of pollen%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480)%2C PAN-2 domain (InterPro:IPR013227)%2C Apple-like (InterPro:IPR003609)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C S-locus glycoprotein (InterPro:IPR000858)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%3B BEST Arabidopsis thaliana protein match is: S-domain-1 13 (TAIR:AT1G11350.1)%3B Has 124566 Blast hits to 122714 proteins in 4439 species: Archae - 108%3B Bacteria - 13570%3B Metazoa - 45533%3B Fungi - 10903%3B Plants - 35507%3B Viruses - 467%3B Other Eukaryotes - 18478 (source: NCBI BLink).; Dbxref=PMID:15272873, PMID:16618929, PMID:18650403, PMID:20736450, locus:2202054; locus_type=protein_coding
AT1G11340.1	chr1:003814116	0.0	C/3814116-3814430,3814514-3814658,3814737-3814974,3815072-3815282,3815387-3815583,3815672-3815791,3815941-3817216	AT1G11340.1 CDS AT1G11340 ID=AT1G11340.1; Parent=AT1G11340; Name=AT1G11340.1; Note=G-type lectin S-receptor-like Serine/Threonine-kinase; conf_class=4; computational_description=S-locus lectin protein kinase family protein%3B FUNCTIONS IN: in 6 functions%3B INVOLVED IN: protein amino acid phosphorylation%2C recognition of pollen%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 8 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480)%2C PAN-2 domain (InterPro:IPR013227)%2C Apple-like (InterPro:IPR003609)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C EGF-like%2C type 3 (InterPro:IPR000742)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C S-locus glycoprotein (InterPro:IPR000858)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%3B BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT1G11410.1)%3B Has 123060 Blast hits to 121063 proteins in 4656 species: Archae - 122%3B Bacteria - 13729%3B Metazoa - 45275%3B Fungi - 10148%3B Plants - 35343%3B Viruses - 433%3B Other Eukaryotes - 18010 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:14973164, PMID:15105442, PMID:17061125, PMID:20736450, locus:2200111; locus_type=protein_coding
AT1G11340.3	chr1:003814502	0.0	C/3814502-3814658,3814737-3814974,3815072-3815282,3815387-3815583,3815672-3815791,3815941-3817420	AT1G11340.3 CDS AT1G11340 ID=AT1G11340.3; Parent=AT1G11340; Name=AT1G11340.3; Note=G-type lectin S-receptor-like Serine/Threonine-kinase; computational_description=S-locus lectin protein kinase family protein%3B FUNCTIONS IN: in 6 functions%3B INVOLVED IN: protein amino acid phosphorylation%2C recognition of pollen%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 8 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480)%2C PAN-2 domain (InterPro:IPR013227)%2C Apple-like (InterPro:IPR003609)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C EGF-like%2C type 3 (InterPro:IPR000742)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C S-locus glycoprotein (InterPro:IPR000858)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%3B BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT1G11410.1)%3B Has 123060 Blast hits to 121063 proteins in 4656 species: Archae - 122%3B Bacteria - 13729%3B Metazoa - 45275%3B Fungi - 10148%3B Plants - 35343%3B Viruses - 433%3B Other Eukaryotes - 18010 (source: NCBI BLink).; Dbxref=PMID:14973164, PMID:15105442, PMID:17061125, PMID:20736450, locus:2200111; locus_type=protein_coding
AT1G11340.2	chr1:003814733	0.0	C/3814733-3814974,3815072-3815282,3815387-3815583,3815672-3815791,3815941-3817420	AT1G11340.2 CDS AT1G11340 ID=AT1G11340.2; Parent=AT1G11340; Name=AT1G11340.2; Note=G-type lectin S-receptor-like Serine/Threonine-kinase; computational_description=S-locus lectin protein kinase family protein%3B FUNCTIONS IN: in 6 functions%3B INVOLVED IN: protein amino acid phosphorylation%2C recognition of pollen%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 8 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480)%2C PAN-2 domain (InterPro:IPR013227)%2C Apple-like (InterPro:IPR003609)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C EGF-like%2C type 3 (InterPro:IPR000742)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C S-locus glycoprotein (InterPro:IPR000858)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%3B BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT1G11410.1)%3B Has 123060 Blast hits to 121063 proteins in 4656 species: Archae - 122%3B Bacteria - 13729%3B Metazoa - 45275%3B Fungi - 10148%3B Plants - 35343%3B Viruses - 433%3B Other Eukaryotes - 18010 (source: NCBI BLink).; Dbxref=PMID:14973164, PMID:15105442, PMID:17061125, PMID:20736450, locus:2200111; locus_type=protein_coding
AT1G11350.1	chr1:003817725	0.0	C/3817725-3818033,3818118-3818268,3818363-3818600,3818705-3818915,3819000-3819193,3819284-3819391,3819471-3820752	AT1G11350.1 CDS AT1G11350 ID=AT1G11350.1; Parent=AT1G11350; Name=AT1G11350.1; Note=S-domain-1 13; conf_class=2; symbol=SD1-13; Alias=CBRLK1, CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, RKS2; full_name=S-domain-1 13; computational_description=S-domain-1 13 (SD1-13)%3B CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480)%2C Apple-like (InterPro:IPR003609)%2C Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C PAN-2 domain (InterPro:IPR013227)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C S-locus glycoprotein (InterPro:IPR000858)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%3B BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT1G11330.1)%3B Has 125042 Blast hits to 123367 proteins in 4403 species: Archae - 116%3B Bacteria - 13667%3B Metazoa - 45426%3B Fungi - 11021%3B Plants - 35654%3B Viruses - 452%3B Other Eukaryotes - 18706 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15659355, PMID:16299169, PMID:16920880, PMID:18552232, PMID:19071125, PMID:19222996, PMID:21477822, locus:2200151; locus_type=protein_coding
AT1G11360.1	chr1:003822171	0.0	C/3822171-3822899	AT1G11360.1 CDS AT1G11360 ID=AT1G11360.1; Parent=AT1G11360; Name=AT1G11360.1; Note=Adenine nucleotide alpha hydrolases-like superfamily protein; conf_class=4; computational_description=Adenine nucleotide alpha hydrolases-like superfamily protein%3B INVOLVED IN: response to stress%3B LOCATED IN: cytosol%2C plasma membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016)%2C Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729)%2C Universal stress protein A (InterPro:IPR006015)%3B BEST Arabidopsis thaliana protein match is: Adenine nucleotide alpha hydrolases-like superfamily protein (TAIR:AT4G27320.1)%3B Has 1309 Blast hits to 1305 proteins in 243 species: Archae - 8%3B Bacteria - 416%3B Metazoa - 122%3B Fungi - 38%3B Plants - 720%3B Viruses - 0%3B Other Eukaryotes - 5 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:12644671, PMID:15659355, PMID:18433157, PMID:20736450, locus:2200036; locus_type=protein_coding
AT1G11360.2	chr1:003822171	0.0	C/3822171-3822899	AT1G11360.2 CDS AT1G11360 ID=AT1G11360.2; Parent=AT1G11360; Name=AT1G11360.2; Note=Adenine nucleotide alpha hydrolases-like superfamily protein; conf_class=4; computational_description=Adenine nucleotide alpha hydrolases-like superfamily protein%3B INVOLVED IN: response to stress%3B LOCATED IN: cytosol%2C plasma membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016)%2C Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729)%2C Universal stress protein A (InterPro:IPR006015)%3B BEST Arabidopsis thaliana protein match is: Adenine nucleotide alpha hydrolases-like superfamily protein (TAIR:AT4G27320.1)%3B Has 1309 Blast hits to 1305 proteins in 243 species: Archae - 8%3B Bacteria - 416%3B Metazoa - 122%3B Fungi - 38%3B Plants - 720%3B Viruses - 0%3B Other Eukaryotes - 5 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:12644671, PMID:15659355, PMID:18433157, PMID:20736450, locus:2200036; locus_type=protein_coding
AT1G11360.3	chr1:003822171	0.0	C/3822171-3822899	AT1G11360.3 CDS AT1G11360 ID=AT1G11360.3; Parent=AT1G11360; Name=AT1G11360.3; Note=Adenine nucleotide alpha hydrolases-like superfamily protein; conf_class=4; computational_description=Adenine nucleotide alpha hydrolases-like superfamily protein%3B INVOLVED IN: response to stress%3B LOCATED IN: cytosol%2C plasma membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016)%2C Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729)%2C Universal stress protein A (InterPro:IPR006015)%3B BEST Arabidopsis thaliana protein match is: Adenine nucleotide alpha hydrolases-like superfamily protein (TAIR:AT4G27320.1)%3B Has 1309 Blast hits to 1305 proteins in 243 species: Archae - 8%3B Bacteria - 416%3B Metazoa - 122%3B Fungi - 38%3B Plants - 720%3B Viruses - 0%3B Other Eukaryotes - 5 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:12644671, PMID:15659355, PMID:18433157, PMID:20736450, locus:2200036; locus_type=protein_coding
AT1G11360.4	chr1:003822171	0.0	C/3822171-3822899	AT1G11360.4 CDS AT1G11360 ID=AT1G11360.4; Parent=AT1G11360; Name=AT1G11360.4; Note=Adenine nucleotide alpha hydrolases-like superfamily protein; conf_class=4; computational_description=Adenine nucleotide alpha hydrolases-like superfamily protein%3B INVOLVED IN: response to stress%3B LOCATED IN: cytosol%2C plasma membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016)%2C Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729)%2C Universal stress protein A (InterPro:IPR006015)%3B BEST Arabidopsis thaliana protein match is: Adenine nucleotide alpha hydrolases-like superfamily protein (TAIR:AT4G27320.1)%3B Has 1309 Blast hits to 1305 proteins in 243 species: Archae - 8%3B Bacteria - 416%3B Metazoa - 122%3B Fungi - 38%3B Plants - 720%3B Viruses - 0%3B Other Eukaryotes - 5 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:12644671, PMID:15659355, PMID:18433157, PMID:20736450, locus:2200036; locus_type=protein_coding
AT1G11362.1	chr1:003824630	0.0	C/3824630-3825184	AT1G11362.1 CDS AT1G11362 ID=AT1G11362.1; Parent=AT1G11362; Name=AT1G11362.1; Note=Plant invertase/pectin methylesterase inhibitor superfamily protein; conf_class=1; computational_description=Plant invertase/pectin methylesterase inhibitor superfamily protein%3B FUNCTIONS IN: enzyme inhibitor activity%2C pectinesterase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501)%3B BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT1G50325.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:4515102518; locus_type=protein_coding
AT1TE12420	chr1:003825294	0.0	C/3825294-3825411	AT1TE12420 transposable_element AT1TE12420 ID=AT1TE12420; Name=AT1TE12420; Alias=ARNOLDY1
AT1TE12425	chr1:003825412	0.0	C/3825412-3825780	AT1TE12425 transposable_element AT1TE12425 ID=AT1TE12425; Name=AT1TE12425; Alias=ARNOLDY2
AT1TE12430	chr1:003825781	0.0	C/3825781-3827697	AT1TE12430 transposable_element AT1TE12430 ID=AT1TE12430; Name=AT1TE12430; Alias=ARNOLDY1
AT1TE12435	chr1:003827698	0.0	W/3827698-3827895	AT1TE12435 transposable_element AT1TE12435 ID=AT1TE12435; Name=AT1TE12435; Alias=HELITRONY3
AT1TE12440	chr1:003827896	0.0	W/3827896-3827918	AT1TE12440 transposable_element AT1TE12440 ID=AT1TE12440; Name=AT1TE12440; Alias=ATREP11
AT1G11370.1	chr1:003828098	0.0	C/3828098-3828585,3829970-3830234,3830832-3830945	AT1G11370.1 CDS AT1G11370 ID=AT1G11370.1; Parent=AT1G11370; Name=AT1G11370.1; Note=Pectin lyase-like superfamily protein; conf_class=1; computational_description=Pectin lyase-like superfamily protein%3B FUNCTIONS IN: pectinesterase activity%3B INVOLVED IN: cell wall modification%3B LOCATED IN: endomembrane system%2C cell wall%2C plant-type cell wall%3B EXPRESSED IN: flower%3B CONTAINS InterPro DOMAIN/s: Pectinesterase%2C active site (InterPro:IPR018040)%2C Pectin lyase fold/virulence factor (InterPro:IPR011050)%2C Pectinesterase%2C catalytic (InterPro:IPR000070)%2C Pectin lyase fold (InterPro:IPR012334)%3B BEST Arabidopsis thaliana protein match is: methylesterase PCR A (TAIR:AT1G11580.1)%3B Has 2636 Blast hits to 2592 proteins in 316 species: Archae - 8%3B Bacteria - 611%3B Metazoa - 1%3B Fungi - 192%3B Plants - 1799%3B Viruses - 0%3B Other Eukaryotes - 25 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16622707, PMID:20736450, locus:2200156; locus_type=protein_coding
AT1G11380.1	chr1:003832695	0.0	W/3832695-3833008,3833167-3833230,3833338-3833502,3833609-3833674,3833766-3833921	AT1G11380.1 CDS AT1G11380 ID=AT1G11380.1; Parent=AT1G11380; Name=AT1G11380.1; Note=PLAC8 family protein; conf_class=2; computational_description=PLAC8 family protein%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461)%3B BEST Arabidopsis thaliana protein match is: PLAC8 family protein (TAIR:AT5G05350.1)%3B Has 314 Blast hits to 313 proteins in 28 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 13%3B Fungi - 8%3B Plants - 293%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, PMID:20736450, locus:2200081; locus_type=protein_coding
AT1G11390.1	chr1:003834762	0.0	C/3834762-3834881,3835127-3835282,3835406-3835669,3835750-3837076,3837298-3837305	AT1G11390.1 CDS AT1G11390 ID=AT1G11390.1; Parent=AT1G11390; Name=AT1G11390.1; Note=Protein kinase superfamily protein; conf_class=2; computational_description=Protein kinase superfamily protein%3B CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147)%2C Protein kinase-like domain (InterPro:IPR011009)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G61640.1)%3B Has 9400 Blast hits to 9333 proteins in 1787 species: Archae - 122%3B Bacteria - 4339%3B Metazoa - 436%3B Fungi - 531%3B Plants - 684%3B Viruses - 14%3B Other Eukaryotes - 3274 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, locus:2200096; locus_type=protein_coding
AT1G11400.1	chr1:003838777	0.0	W/3838777-3838959,3839227-3839340,3839422-3839610,3839850-3839978	AT1G11400.1 CDS AT1G11400 ID=AT1G11400.1; Parent=AT1G11400; Name=AT1G11400.1; Note=partner of Y14-MAGO; curator_summary=The PYM gene encodes a protein capable of interacting with MAGO%2C and Y14%2C whose orthologs form part of the exon junction complex in animal cells. In vitro binding assays indicate that PYM can bind to MAGO and Y14 either individually%2C or when they are together. But%2C MAGO-Y14-PYM ternary complexes are difficult to detect in vivo in Arabidopsis based on pull-down experiments. However there is some evidence for a weak association in Arabidopsis flowers. PYM appears primarily cytoplasmic%2C but it also seems to into the nucleus at times. Its nuclear localization signal has not been rigorously defined%2C but there is evidence for a nuclear export signal between amino acids 171-205 in the C-terminus.; conf_class=1; symbol=PYM; full_name=partner of Y14-MAGO; computational_description=partner of Y14-MAGO (PYM)%3B CONTAINS InterPro DOMAIN/s: Exon junction complex%2C Pym (InterPro:IPR015362)%3B Has 344 Blast hits to 344 proteins in 136 species: Archae - 0%3B Bacteria - 3%3B Metazoa - 157%3B Fungi - 114%3B Plants - 46%3B Viruses - 0%3B Other Eukaryotes - 24 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16953428, PMID:18775970, PMID:21676911, PMID:22589469, locus:2200116; locus_type=protein_coding
AT1G11400.2	chr1:003838777	0.0	W/3838777-3838959,3839227-3839340,3839422-3839610,3839850-3839978	AT1G11400.2 CDS AT1G11400 ID=AT1G11400.2; Parent=AT1G11400; Name=AT1G11400.2; Note=partner of Y14-MAGO; curator_summary=The PYM gene encodes a protein capable of interacting with MAGO%2C and Y14%2C whose orthologs form part of the exon junction complex in animal cells. In vitro binding assays indicate that PYM can bind to MAGO and Y14 either individually%2C or when they are together. But%2C MAGO-Y14-PYM ternary complexes are difficult to detect in vivo in Arabidopsis based on pull-down experiments. However there is some evidence for a weak association in Arabidopsis flowers. PYM appears primarily cytoplasmic%2C but it also seems to into the nucleus at times. Its nuclear localization signal has not been rigorously defined%2C but there is evidence for a nuclear export signal between amino acids 171-205 in the C-terminus.; conf_class=2; symbol=PYM; full_name=partner of Y14-MAGO; computational_description=partner of Y14-MAGO (PYM)%3B CONTAINS InterPro DOMAIN/s: Exon junction complex%2C Pym (InterPro:IPR015362)%3B Has 344 Blast hits to 344 proteins in 136 species: Archae - 0%3B Bacteria - 3%3B Metazoa - 157%3B Fungi - 114%3B Plants - 46%3B Viruses - 0%3B Other Eukaryotes - 24 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16953428, PMID:18775970, PMID:21676911, PMID:22589469, locus:2200116; locus_type=protein_coding
AT1G11400.3	chr1:003838777	0.0	W/3838777-3838959,3839227-3839340,3839422-3839610,3839850-3839978	AT1G11400.3 CDS AT1G11400 ID=AT1G11400.3; Parent=AT1G11400; Name=AT1G11400.3; Note=partner of Y14-MAGO; curator_summary=The PYM gene encodes a protein capable of interacting with MAGO%2C and Y14%2C whose orthologs form part of the exon junction complex in animal cells. In vitro binding assays indicate that PYM can bind to MAGO and Y14 either individually%2C or when they are together. But%2C MAGO-Y14-PYM ternary complexes are difficult to detect in vivo in Arabidopsis based on pull-down experiments. However there is some evidence for a weak association in Arabidopsis flowers. PYM appears primarily cytoplasmic%2C but it also seems to into the nucleus at times. Its nuclear localization signal has not been rigorously defined%2C but there is evidence for a nuclear export signal between amino acids 171-205 in the C-terminus.; conf_class=2; symbol=PYM; full_name=partner of Y14-MAGO; computational_description=partner of Y14-MAGO (PYM)%3B CONTAINS InterPro DOMAIN/s: Exon junction complex%2C Pym (InterPro:IPR015362)%3B Has 344 Blast hits to 344 proteins in 136 species: Archae - 0%3B Bacteria - 3%3B Metazoa - 157%3B Fungi - 114%3B Plants - 46%3B Viruses - 0%3B Other Eukaryotes - 24 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16953428, PMID:18775970, PMID:21676911, PMID:22589469, locus:2200116; locus_type=protein_coding
AT1G11400.4	chr1:003838777	0.0	W/3838777-3838959,3839227-3839340,3839422-3839610,3839850-3839978	AT1G11400.4 CDS AT1G11400 ID=AT1G11400.4; Parent=AT1G11400; Name=AT1G11400.4; Note=partner of Y14-MAGO; symbol=PYM; full_name=partner of Y14-MAGO; Dbxref=PMID:16953428, PMID:18775970, PMID:21676911, PMID:22589469, locus:2200116; curator_summary=The PYM gene encodes a protein capable of interacting with MAGO%2C and Y14%2C whose orthologs form part of the exon junction complex in animal cells. In vitro binding assays indicate that PYM can bind to MAGO and Y14 either individually%2C or when they are together. But%2C MAGO-Y14-PYM ternary complexes are difficult to detect in vivo in Arabidopsis based on pull-down experiments. However there is some evidence for a weak association in Arabidopsis flowers. PYM appears primarily cytoplasmic%2C but it also seems to into the nucleus at times. Its nuclear localization signal has not been rigorously defined%2C but there is evidence for a nuclear export signal between amino acids 171-205 in the C-terminus.; computational_description=partner of Y14-MAGO (PYM)%3B CONTAINS InterPro DOMAIN/s: Exon junction complex%2C Pym (InterPro:IPR015362)%3B Has 344 Blast hits to 344 proteins in 136 species: Archae - 0%3B Bacteria - 3%3B Metazoa - 157%3B Fungi - 114%3B Plants - 46%3B Viruses - 0%3B Other Eukaryotes - 24 (source: NCBI BLink).; locus_type=protein_coding
AT1G11400.5	chr1:003838777	0.0	W/3838777-3838959,3839227-3839340,3839422-3839610,3839850-3839978	AT1G11400.5 CDS AT1G11400 ID=AT1G11400.5; Parent=AT1G11400; Name=AT1G11400.5; Note=partner of Y14-MAGO; symbol=PYM; full_name=partner of Y14-MAGO; Dbxref=PMID:16953428, PMID:18775970, PMID:21676911, PMID:22589469, locus:2200116; curator_summary=The PYM gene encodes a protein capable of interacting with MAGO%2C and Y14%2C whose orthologs form part of the exon junction complex in animal cells. In vitro binding assays indicate that PYM can bind to MAGO and Y14 either individually%2C or when they are together. But%2C MAGO-Y14-PYM ternary complexes are difficult to detect in vivo in Arabidopsis based on pull-down experiments. However there is some evidence for a weak association in Arabidopsis flowers. PYM appears primarily cytoplasmic%2C but it also seems to into the nucleus at times. Its nuclear localization signal has not been rigorously defined%2C but there is evidence for a nuclear export signal between amino acids 171-205 in the C-terminus.; computational_description=partner of Y14-MAGO (PYM)%3B CONTAINS InterPro DOMAIN/s: Exon junction complex%2C Pym (InterPro:IPR015362)%3B Has 344 Blast hits to 344 proteins in 136 species: Archae - 0%3B Bacteria - 3%3B Metazoa - 157%3B Fungi - 114%3B Plants - 46%3B Viruses - 0%3B Other Eukaryotes - 24 (source: NCBI BLink).; locus_type=protein_coding
AT1G11400.6	chr1:003838777	0.0	W/3838777-3838959,3839227-3839340,3839422-3839610,3839850-3839978	AT1G11400.6 CDS AT1G11400 ID=AT1G11400.6; Parent=AT1G11400; Name=AT1G11400.6; Note=partner of Y14-MAGO; symbol=PYM; full_name=partner of Y14-MAGO; Dbxref=PMID:16953428, PMID:18775970, PMID:21676911, PMID:22589469, locus:2200116; curator_summary=The PYM gene encodes a protein capable of interacting with MAGO%2C and Y14%2C whose orthologs form part of the exon junction complex in animal cells. In vitro binding assays indicate that PYM can bind to MAGO and Y14 either individually%2C or when they are together. But%2C MAGO-Y14-PYM ternary complexes are difficult to detect in vivo in Arabidopsis based on pull-down experiments. However there is some evidence for a weak association in Arabidopsis flowers. PYM appears primarily cytoplasmic%2C but it also seems to into the nucleus at times. Its nuclear localization signal has not been rigorously defined%2C but there is evidence for a nuclear export signal between amino acids 171-205 in the C-terminus.; computational_description=partner of Y14-MAGO (PYM)%3B CONTAINS InterPro DOMAIN/s: Exon junction complex%2C Pym (InterPro:IPR015362)%3B Has 344 Blast hits to 344 proteins in 136 species: Archae - 0%3B Bacteria - 3%3B Metazoa - 157%3B Fungi - 114%3B Plants - 46%3B Viruses - 0%3B Other Eukaryotes - 24 (source: NCBI BLink).; locus_type=protein_coding
AT1G04847.1	chr1:003840833	0.0	C/3840833-3841171	AT1G04847.1 lnc_RNA AT1G04847 ID=AT1G04847.1; Parent=AT1G04847; Name=AT1G04847.1; locus_type=long_noncoding_rna
AT1G11410.3	chr1:003841195	0.0	W/3841195-3841209,3841373-3842570,3842654-3842782,3842872-3843285,3843391-3843628,3843720-3843864,3843958-3844284	AT1G11410.3 CDS AT1G11410 ID=AT1G11410.3; Parent=AT1G11410; Name=AT1G11410.3; Note=S-locus lectin protein kinase family protein; computational_description=S-locus lectin protein kinase family protein%3B FUNCTIONS IN: in 6 functions%3B INVOLVED IN: protein amino acid phosphorylation%2C recognition of pollen%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480)%2C Apple-like (InterPro:IPR003609)%2C PAN-2 domain (InterPro:IPR013227)%2C S-locus receptor kinase%2C C-terminal (InterPro:IPR021820)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C EGF-like%2C type 3 (InterPro:IPR000742)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C S-locus glycoprotein (InterPro:IPR000858)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%2C Concanavalin A-like lectin/glucanase (InterPro:IPR008985)%3B BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT1G11340.1)%3B Has 122302 Blast hits to 120413 proteins in 4701 species: Archae - 118%3B Bacteria - 13948%3B Metazoa - 44921%3B Fungi - 9999%3B Plants - 35002%3B Viruses - 441%3B Other Eukaryotes - 17873 (source: NCBI BLink).; Dbxref=PMID:15010618, PMID:20736450, locus:2200136; locus_type=protein_coding
AT1G11410.4	chr1:003841265	0.0	W/3841265-3842570,3842654-3842782,3842872-3843285,3843391-3843628,3843720-3843864,3843958-3844284	AT1G11410.4 CDS AT1G11410 ID=AT1G11410.4; Parent=AT1G11410; Name=AT1G11410.4; Note=S-locus lectin protein kinase family protein; computational_description=S-locus lectin protein kinase family protein%3B FUNCTIONS IN: in 6 functions%3B INVOLVED IN: protein amino acid phosphorylation%2C recognition of pollen%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480)%2C Apple-like (InterPro:IPR003609)%2C PAN-2 domain (InterPro:IPR013227)%2C S-locus receptor kinase%2C C-terminal (InterPro:IPR021820)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C EGF-like%2C type 3 (InterPro:IPR000742)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C S-locus glycoprotein (InterPro:IPR000858)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%2C Concanavalin A-like lectin/glucanase (InterPro:IPR008985)%3B BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT1G11340.1)%3B Has 122302 Blast hits to 120413 proteins in 4701 species: Archae - 118%3B Bacteria - 13948%3B Metazoa - 44921%3B Fungi - 9999%3B Plants - 35002%3B Viruses - 441%3B Other Eukaryotes - 17873 (source: NCBI BLink).; Dbxref=PMID:15010618, PMID:20736450, locus:2200136; locus_type=protein_coding
AT1G11410.1	chr1:003841286	0.0	W/3841286-3842570,3842654-3842782,3842872-3843285,3843391-3843628,3843720-3843864,3843958-3844284	AT1G11410.1 CDS AT1G11410 ID=AT1G11410.1; Parent=AT1G11410; Name=AT1G11410.1; Note=S-locus lectin protein kinase family protein; conf_class=2; computational_description=S-locus lectin protein kinase family protein%3B FUNCTIONS IN: in 6 functions%3B INVOLVED IN: protein amino acid phosphorylation%2C recognition of pollen%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480)%2C Apple-like (InterPro:IPR003609)%2C PAN-2 domain (InterPro:IPR013227)%2C S-locus receptor kinase%2C C-terminal (InterPro:IPR021820)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C EGF-like%2C type 3 (InterPro:IPR000742)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C S-locus glycoprotein (InterPro:IPR000858)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%2C Concanavalin A-like lectin/glucanase (InterPro:IPR008985)%3B BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT1G11340.1)%3B Has 122302 Blast hits to 120413 proteins in 4701 species: Archae - 118%3B Bacteria - 13948%3B Metazoa - 44921%3B Fungi - 9999%3B Plants - 35002%3B Viruses - 441%3B Other Eukaryotes - 17873 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15010618, PMID:20736450, locus:2200136; locus_type=protein_coding
AT1G11410.2	chr1:003841631	0.0	W/3841631-3842570,3842654-3842782,3842872-3843285,3843391-3843628,3843720-3843864,3843958-3844284	AT1G11410.2 CDS AT1G11410 ID=AT1G11410.2; Parent=AT1G11410; Name=AT1G11410.2; Note=S-locus lectin protein kinase family protein; computational_description=S-locus lectin protein kinase family protein%3B FUNCTIONS IN: in 6 functions%3B INVOLVED IN: protein amino acid phosphorylation%2C recognition of pollen%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480)%2C Apple-like (InterPro:IPR003609)%2C PAN-2 domain (InterPro:IPR013227)%2C S-locus receptor kinase%2C C-terminal (InterPro:IPR021820)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C EGF-like%2C type 3 (InterPro:IPR000742)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C S-locus glycoprotein (InterPro:IPR000858)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%2C Concanavalin A-like lectin/glucanase (InterPro:IPR008985)%3B BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT1G11340.1)%3B Has 122302 Blast hits to 120413 proteins in 4701 species: Archae - 118%3B Bacteria - 13948%3B Metazoa - 44921%3B Fungi - 9999%3B Plants - 35002%3B Viruses - 441%3B Other Eukaryotes - 17873 (source: NCBI BLink).; Dbxref=PMID:15010618, PMID:20736450, locus:2200136; locus_type=protein_coding
AT1G11420.1	chr1:003844581	0.0	C/3844581-3845266,3845391-3845475,3845543-3845662,3845752-3845838,3845944-3846345,3846438-3846872	AT1G11420.1 CDS AT1G11420 ID=AT1G11420.1; Parent=AT1G11420; Name=AT1G11420.1; Note=agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 2); curator_summary=Member of the plant-specific DUF724 protein family. Arabidopsis has 10 DUF724 proteins.; conf_class=6; symbol=DUF2; Alias=ATDUF2, DOMAIN OF UNKNOWN FUNCTION 724 2; full_name=DOMAIN OF UNKNOWN FUNCTION 724 2; computational_description=DOMAIN OF UNKNOWN FUNCTION 724 2 (DUF2)%3B FUNCTIONS IN: RNA binding%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Tudor-like%2C plant (InterPro:IPR014002)%2C Agenet (InterPro:IPR008395)%2C Protein of unknown function DUF724 (InterPro:IPR007930)%3B BEST Arabidopsis thaliana protein match is: DOMAIN OF UNKNOWN FUNCTION 724 6 (TAIR:AT2G47230.1)%3B Has 603 Blast hits to 525 proteins in 93 species: Archae - 19%3B Bacteria - 36%3B Metazoa - 149%3B Fungi - 17%3B Plants - 302%3B Viruses - 1%3B Other Eukaryotes - 79 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:12575993, PMID:19291320, PMID:19795213, locus:2200146; locus_type=protein_coding
AT1G11430.1	chr1:003847273	0.0	W/3847273-3847634,3848411-3848508,3848606-3848671,3848766-3848938	AT1G11430.1 CDS AT1G11430 ID=AT1G11430.1; Parent=AT1G11430; Name=AT1G11430.1; Note=plastid developmental protein DAG; curator_summary=Encodes a protein involved in RNA editing in chloroplasts.; conf_class=4; symbol=MORF9; full_name=multiple organellar RNA editing factor 9; computational_description=plastid developmental protein DAG%2C putative%3B LOCATED IN: chloroplast stroma%2C chloroplast%2C chloroplast envelope%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B BEST Arabidopsis thaliana protein match is: plastid developmental protein DAG%2C putative (TAIR:AT3G06790.2)%3B Has 252 Blast hits to 229 proteins in 14 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 252%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:14576160, PMID:18650403, PMID:22411807, PMID:24497494, locus:2200131; locus_type=protein_coding
AT1G11440.1	chr1:003849418	0.0	W/3849418-3850509	AT1G11440.1 CDS AT1G11440 ID=AT1G11440.1; Parent=AT1G11440; Name=AT1G11440.1; Note=hypothetical protein; conf_class=1; computational_description=BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT3G29075.1)%3B Has 19337 Blast hits to 8589 proteins in 488 species: Archae - 26%3B Bacteria - 641%3B Metazoa - 7852%3B Fungi - 2167%3B Plants - 955%3B Viruses - 616%3B Other Eukaryotes - 7080 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:21477822, PMID:22487254, locus:2200051; locus_type=protein_coding
AT1TE12520	chr1:003851180	0.0	C/3851180-3851787	AT1TE12520 transposable_element AT1TE12520 ID=AT1TE12520; Name=AT1TE12520; Alias=HELITRONY1D
AT1TE12525	chr1:003851788	0.0	W/3851788-3851943	AT1TE12525 transposable_element AT1TE12525 ID=AT1TE12525; Name=AT1TE12525; Alias=BRODYAGA2
AT1G11450.3	chr1:003853317	0.0	W/3853317-3853519,3853758-3853820,3853995-3854111,3854342-3854741,3854870-3855021,3855136-3855259	AT1G11450.3 CDS AT1G11450 ID=AT1G11450.3; Parent=AT1G11450; Name=AT1G11450.3; Note=nodulin MtN21 /EamA-like transporter family protein; symbol=UMAMIT27; full_name=Usually multiple acids move in and out Transporters 27; Dbxref=PMID:14722770, PMID:17497164, PMID:20736450, locus:2200056; curator_summary=nodulin MtN21-like transporter family protein; computational_description=nodulin MtN21 /EamA-like transporter family protein%3B LOCATED IN: endomembrane system%2C membrane%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6%2C transmembrane (InterPro:IPR000620)%3B BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT1G11460.1)%3B Has 1836 Blast hits to 1833 proteins in 198 species: Archae - 4%3B Bacteria - 635%3B Metazoa - 4%3B Fungi - 2%3B Plants - 1171%3B Viruses - 0%3B Other Eukaryotes - 20 (source: NCBI BLink).; locus_type=protein_coding
AT1G11450.4	chr1:003853317	0.0	W/3853317-3853519,3853758-3853820,3853995-3854111,3854342-3854741,3854870-3855046	AT1G11450.4 CDS AT1G11450 ID=AT1G11450.4; Parent=AT1G11450; Name=AT1G11450.4; Note=nodulin MtN21 /EamA-like transporter family protein; symbol=UMAMIT27; full_name=Usually multiple acids move in and out Transporters 27; curator_summary=nodulin MtN21-like transporter family protein; computational_description=nodulin MtN21 /EamA-like transporter family protein%3B LOCATED IN: endomembrane system%2C membrane%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6%2C transmembrane (InterPro:IPR000620)%3B BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT1G11460.1)%3B Has 1836 Blast hits to 1833 proteins in 198 species: Archae - 4%3B Bacteria - 635%3B Metazoa - 4%3B Fungi - 2%3B Plants - 1171%3B Viruses - 0%3B Other Eukaryotes - 20 (source: NCBI BLink).; Dbxref=PMID:14722770, PMID:17497164, PMID:20736450, locus:2200056; locus_type=protein_coding
AT1G11450.5	chr1:003853449	0.0	W/3853449-3853519,3853758-3853820,3853995-3854111,3854342-3854741,3854870-3855021,3855136-3855259	AT1G11450.5 CDS AT1G11450 ID=AT1G11450.5; Parent=AT1G11450; Name=AT1G11450.5; Note=nodulin MtN21 /EamA-like transporter family protein; symbol=UMAMIT27; full_name=Usually multiple acids move in and out Transporters 27; curator_summary=nodulin MtN21-like transporter family protein; computational_description=nodulin MtN21 /EamA-like transporter family protein%3B LOCATED IN: endomembrane system%2C membrane%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6%2C transmembrane (InterPro:IPR000620)%3B BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT1G11460.1)%3B Has 1836 Blast hits to 1833 proteins in 198 species: Archae - 4%3B Bacteria - 635%3B Metazoa - 4%3B Fungi - 2%3B Plants - 1171%3B Viruses - 0%3B Other Eukaryotes - 20 (source: NCBI BLink).; Dbxref=PMID:14722770, PMID:17497164, PMID:20736450, locus:2200056; locus_type=protein_coding
AT1G11450.2	chr1:003853470	0.0	W/3853470-3853519,3853758-3853820,3853995-3854111,3854342-3854741,3854870-3855021,3855136-3855259	AT1G11450.2 CDS AT1G11450 ID=AT1G11450.2; Parent=AT1G11450; Name=AT1G11450.2; Note=nodulin MtN21 /EamA-like transporter family protein; curator_summary=nodulin MtN21-like transporter family protein; conf_class=2; symbol=UMAMIT27; full_name=Usually multiple acids move in and out Transporters 27; computational_description=nodulin MtN21 /EamA-like transporter family protein%3B LOCATED IN: endomembrane system%2C membrane%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6%2C transmembrane (InterPro:IPR000620)%3B BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT1G11460.1)%3B Has 1836 Blast hits to 1833 proteins in 198 species: Archae - 4%3B Bacteria - 635%3B Metazoa - 4%3B Fungi - 2%3B Plants - 1171%3B Viruses - 0%3B Other Eukaryotes - 20 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14722770, PMID:17497164, PMID:20736450, locus:2200056; locus_type=protein_coding
AT1G11450.1	chr1:003854005	0.0	W/3854005-3854111,3854342-3854741,3854870-3855021,3855136-3855259	AT1G11450.1 CDS AT1G11450 ID=AT1G11450.1; Parent=AT1G11450; Name=AT1G11450.1; Note=nodulin MtN21 /EamA-like transporter family protein; curator_summary=nodulin MtN21-like transporter family protein; conf_class=1; symbol=UMAMIT27; full_name=Usually multiple acids move in and out Transporters 27; computational_description=nodulin MtN21 /EamA-like transporter family protein%3B LOCATED IN: endomembrane system%2C membrane%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6%2C transmembrane (InterPro:IPR000620)%3B BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT1G11460.1)%3B Has 1836 Blast hits to 1833 proteins in 198 species: Archae - 4%3B Bacteria - 635%3B Metazoa - 4%3B Fungi - 2%3B Plants - 1171%3B Viruses - 0%3B Other Eukaryotes - 20 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14722770, PMID:17497164, PMID:20736450, locus:2200056; locus_type=protein_coding
AT1G11460.1	chr1:003857005	0.0	W/3857005-3857207,3857370-3857432,3857595-3857711,3858222-3858624,3858916-3859067,3859193-3859268	AT1G11460.1 CDS AT1G11460 ID=AT1G11460.1; Parent=AT1G11460; Name=AT1G11460.1; Note=nodulin MtN21 /EamA-like transporter family protein; curator_summary=nodulin MtN21-like transporter family protein; conf_class=4; symbol=UMAMIT26; full_name=Usually multiple acids move in and out Transporters 26; computational_description=nodulin MtN21 /EamA-like transporter family protein%3B LOCATED IN: membrane%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6%2C transmembrane (InterPro:IPR000620)%3B BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT1G01070.1)%3B Has 2512 Blast hits to 2503 proteins in 352 species: Archae - 22%3B Bacteria - 1127%3B Metazoa - 4%3B Fungi - 2%3B Plants - 1206%3B Viruses - 0%3B Other Eukaryotes - 151 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:14722770, PMID:20736450, locus:2200041; locus_type=protein_coding
AT1G11470.1	chr1:003859874	0.0	C/3859874-3860119,3860227-3860288,3860378-3860522	AT1G11470.1 CDS AT1G11470 ID=AT1G11470.1; Parent=AT1G11470; Name=AT1G11470.1; Note=Pentatricopeptide repeat (PPR) superfamily protein; conf_class=6; computational_description=Pentatricopeptide repeat (PPR) superfamily protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G02370.1)%3B Has 31 Blast hits to 31 proteins in 3 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 31%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:14576160, PMID:14657372, locus:2200046; locus_type=protein_coding
AT1G11475.1	chr1:003862520	0.0	W/3862520-3862555,3862759-3862817,3863584-3863678,3863780-3863805	AT1G11475.1 CDS AT1G11475 ID=AT1G11475.1; Parent=AT1G11475; Name=AT1G11475.1; Note=RNA polymerases N / 8 kDa subunit; curator_summary=Non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II%2C IV and V%3B homologous to budding yeast RPB10.; conf_class=2; symbol=NRPB10; computational_description=NRPB10%3B FUNCTIONS IN: DNA-directed RNA polymerase activity%2C DNA binding%2C zinc ion binding%3B INVOLVED IN: transcription%2C DNA-dependent%2C transcription%2C regulation of transcription%3B LOCATED IN: DNA-directed RNA polymerase V complex%2C DNA-directed RNA polymerase II%2C core complex%2C DNA-directed RNA polymerase IV complex%3B CONTAINS InterPro DOMAIN/s: RNA polymerases%2C N/8kDa subunit (InterPro:IPR000268)%2C RNA polymerases%2C subunit N%2C zinc binding site (InterPro:IPR020789)%2C Homeodomain-related (InterPro:IPR012287)%3B BEST Arabidopsis thaliana protein match is: RNA polymerases N / 8 kDa subunit (TAIR:AT1G61700.1)%3B Has 941 Blast hits to 941 proteins in 324 species: Archae - 263%3B Bacteria - 0%3B Metazoa - 146%3B Fungi - 184%3B Plants - 72%3B Viruses - 0%3B Other Eukaryotes - 276 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:19110459, locus:2823924; locus_type=protein_coding
AT1G11480.1	chr1:003864368	0.0	C/3864368-3864827,3864953-3865014,3865100-3865136,3865256-3865434,3865529-3866435,3866659-3866750	AT1G11480.1 CDS AT1G11480 ID=AT1G11480.1; Parent=AT1G11480; Name=AT1G11480.1; Note=eukaryotic translation initiation factor-like protein; conf_class=2; computational_description=eukaryotic translation initiation factor-related%3B Has 394 Blast hits to 370 proteins in 111 species: Archae - 0%3B Bacteria - 23%3B Metazoa - 177%3B Fungi - 53%3B Plants - 82%3B Viruses - 0%3B Other Eukaryotes - 59 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15047901, PMID:18650403, PMID:18775970, PMID:20736450, locus:2200091; locus_type=protein_coding
AT1G11480.2	chr1:003864368	0.0	C/3864368-3864827,3864953-3865014,3865100-3865136,3865256-3865434,3865529-3866435,3866655-3866707	AT1G11480.2 CDS AT1G11480 ID=AT1G11480.2; Parent=AT1G11480; Name=AT1G11480.2; Note=eukaryotic translation initiation factor-like protein; conf_class=2; computational_description=eukaryotic translation initiation factor-related%3B Has 394 Blast hits to 370 proteins in 111 species: Archae - 0%3B Bacteria - 23%3B Metazoa - 177%3B Fungi - 53%3B Plants - 82%3B Viruses - 0%3B Other Eukaryotes - 59 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15047901, PMID:18650403, PMID:18775970, PMID:20736450, locus:2200091; locus_type=protein_coding
AT1G11482.1	chr1:003867405	0.0	C/3867405-3868870	AT1G11482.1 pseudogenic_transcript AT1G11482 ID=AT1G11482.1; Parent=AT1G11482; Name=AT1G11482.1; index=1; Note=pseudogene; curator_summary=unknown pseudogene; Dbxref=locus:4515102519, locus:4515102519; locus_type=pseudogene; computational_description=pseudogene of hypothetical protein (DUF295)
AT1G11490.1	chr1:003868884	0.0	C/3868884-3869527,3869612-3870065	AT1G11490.1 CDS AT1G11490 ID=AT1G11490.1; Parent=AT1G11490; Name=AT1G11490.1; Note=zinc finger (C2H2 type) family protein; conf_class=2; computational_description=zinc finger (C2H2 type) family protein%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%2C zinc ion binding%2C nucleic acid binding%3B LOCATED IN: intracellular%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C C2H2-like (InterPro:IPR015880)%3B BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT4G27240.1)%3B Has 263 Blast hits to 257 proteins in 27 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 33%3B Plants - 228%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, locus:2200101; locus_type=protein_coding
AT1G11490.2	chr1:003868884	0.0	C/3868884-3869527,3869612-3870065	AT1G11490.2 CDS AT1G11490 ID=AT1G11490.2; Parent=AT1G11490; Name=AT1G11490.2; Note=zinc finger (C2H2 type) family protein; Dbxref=PMID:11118137, locus:2200101; computational_description=zinc finger (C2H2 type) family protein%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%2C zinc ion binding%2C nucleic acid binding%3B LOCATED IN: intracellular%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C C2H2-like (InterPro:IPR015880)%3B BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT4G27240.1)%3B Has 263 Blast hits to 257 proteins in 27 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 33%3B Plants - 228%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; locus_type=protein_coding
AT1G11500.3	chr1:003870818	0.0	W/3870818-3870931,3871018-3871244,3871342-3871570	AT1G11500.3 CDS AT1G11500 ID=AT1G11500.3; Parent=AT1G11500; Name=AT1G11500.3; Note=transmembrane protein%2C putative (DUF1218); computational_description=Protein of unknown function (DUF1218)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1218) (TAIR:AT4G21310.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=locus:2200071; locus_type=protein_coding
AT1G11500.1	chr1:003870833	0.0	W/3870833-3870931,3871018-3871244,3871342-3871570	AT1G11500.1 CDS AT1G11500 ID=AT1G11500.1; Parent=AT1G11500; Name=AT1G11500.1; Note=transmembrane protein%2C putative (DUF1218); conf_class=1; computational_description=Protein of unknown function (DUF1218)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1218) (TAIR:AT4G21310.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:2200071; locus_type=protein_coding
AT1G11500.2	chr1:003871003	0.0	W/3871003-3871244,3871342-3871570	AT1G11500.2 CDS AT1G11500 ID=AT1G11500.2; Parent=AT1G11500; Name=AT1G11500.2; Note=transmembrane protein%2C putative (DUF1218); computational_description=Protein of unknown function (DUF1218)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1218) (TAIR:AT4G21310.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=locus:2200071; locus_type=protein_coding
AT1G11510.1	chr1:003871778	0.0	C/3871778-3872836	AT1G11510.1 CDS AT1G11510 ID=AT1G11510.1; Parent=AT1G11510; Name=AT1G11510.1; Note=DNA-binding storekeeper protein-related transcriptional regulator; conf_class=1; computational_description=DNA-binding storekeeper protein-related transcriptional regulator%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592)%3B BEST Arabidopsis thaliana protein match is: DNA-binding storekeeper protein-related transcriptional regulator (TAIR:AT1G61730.1)%3B Has 6244 Blast hits to 2746 proteins in 297 species: Archae - 0%3B Bacteria - 3717%3B Metazoa - 876%3B Fungi - 377%3B Plants - 483%3B Viruses - 20%3B Other Eukaryotes - 771 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12535344, PMID:20736450, locus:2200106; locus_type=protein_coding
AT1G11510.2	chr1:003871778	0.0	C/3871778-3872488,3872576-3872836	AT1G11510.2 CDS AT1G11510 ID=AT1G11510.2; Parent=AT1G11510; Name=AT1G11510.2; Note=DNA-binding storekeeper protein-related transcriptional regulator; computational_description=DNA-binding storekeeper protein-related transcriptional regulator%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592)%3B BEST Arabidopsis thaliana protein match is: DNA-binding storekeeper protein-related transcriptional regulator (TAIR:AT1G61730.1)%3B Has 6244 Blast hits to 2746 proteins in 297 species: Archae - 0%3B Bacteria - 3717%3B Metazoa - 876%3B Fungi - 377%3B Plants - 483%3B Viruses - 20%3B Other Eukaryotes - 771 (source: NCBI BLink).; Dbxref=PMID:12535344, PMID:20736450, locus:2200106; locus_type=protein_coding
AT1G11520.1	chr1:003873029	0.0	W/3873029-3873619	AT1G11520.1 CDS AT1G11520 ID=AT1G11520.1; Parent=AT1G11520; Name=AT1G11520.1; Note=pliceosome associated protein-like protein; conf_class=8; computational_description=pliceosome associated protein-related%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: male gametophyte%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%3B BEST Arabidopsis thaliana protein match is: proline-rich spliceosome-associated (PSP) family protein (TAIR:AT4G21660.2)%3B Has 139 Blast hits to 132 proteins in 55 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 92%3B Fungi - 0%3B Plants - 40%3B Viruses - 0%3B Other Eukaryotes - 7 (source: NCBI BLink).; conf_rating=*; Dbxref=PMID:18775970, locus:2200126; locus_type=protein_coding
AT1G11530.1	chr1:003874518	0.0	W/3874518-3874595,3874872-3874994,3875156-3875311	AT1G11530.1 CDS AT1G11530 ID=AT1G11530.1; Parent=AT1G11530; Name=AT1G11530.1; Note=C-terminal cysteine residue is changed to a serine 1; curator_summary=Encodes a monocysteinic thioredoxin%2C thioredoxin in which the second cysteine of the redox site is replaced by a serine%2C with low disulfide reductase but efficient disulfide isomerase activity.; conf_class=2; symbol=CXXS1; Alias=ATCXXS1, C-terminal cysteine residue is changed to a serine 1; full_name=C-terminal cysteine residue is changed to a serine 1; computational_description=C-terminal cysteine residue is changed to a serine 1 (CXXS1)%3B CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335)%2C Thioredoxin%2C core (InterPro:IPR015467)%2C Thioredoxin-like (InterPro:IPR017936)%2C Thioredoxin domain (InterPro:IPR013766)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B BEST Arabidopsis thaliana protein match is: thioredoxin H-type 1 (TAIR:AT3G51030.1)%3B Has 9365 Blast hits to 9347 proteins in 2322 species: Archae - 165%3B Bacteria - 5071%3B Metazoa - 947%3B Fungi - 584%3B Plants - 1098%3B Viruses - 0%3B Other Eukaryotes - 1500 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15619004, PMID:16608451, PMID:17031546, PMID:18231654, PMID:18650403, PMID:18614707, PMID:20736450, locus:2200141; locus_type=protein_coding
AT1G04853.1	chr1:003874538	0.0	C/3874538-3874895	AT1G04853.1 antisense_lncRNA AT1G04853 ID=AT1G04853.1; Parent=AT1G04853; Name=AT1G04853.1; description=Natural antisense transcript overlaps with AT1G11530; Note=Natural antisense transcript overlaps with AT1G11530; locus_type=antisense_long_noncoding_rna
AT1G11540.1	chr1:003875476	0.0	C/3875476-3875784,3875880-3876020,3876116-3876265,3876470-3876973	AT1G11540.1 CDS AT1G11540 ID=AT1G11540.1; Parent=AT1G11540; Name=AT1G11540.1; Note=Sulfite exporter TauE/SafE family protein; conf_class=2; computational_description=Sulfite exporter TauE/SafE family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%2C integral to membrane%3B EXPRESSED IN: 13 plant structures%3B EXPRESSED DURING: M germinated pollen stage%2C 4 anthesis%2C C globular stage%2C 4 leaf senescence stage%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF81 (InterPro:IPR002781)%3B BEST Arabidopsis thaliana protein match is: Sulfite exporter TauE/SafE family protein (TAIR:AT1G61740.1)%3B Has 3200 Blast hits to 2964 proteins in 743 species: Archae - 110%3B Bacteria - 1734%3B Metazoa - 0%3B Fungi - 0%3B Plants - 195%3B Viruses - 0%3B Other Eukaryotes - 1161 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16299181, PMID:17061125, PMID:18650403, PMID:18775970, PMID:20736450, locus:2200061; locus_type=protein_coding
AT1G11540.2	chr1:003875476	0.0	C/3875476-3875784,3875880-3876020,3876116-3876265,3876470-3877222	AT1G11540.2 CDS AT1G11540 ID=AT1G11540.2; Parent=AT1G11540; Name=AT1G11540.2; Note=Sulfite exporter TauE/SafE family protein; computational_description=Sulfite exporter TauE/SafE family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%2C integral to membrane%3B EXPRESSED IN: 13 plant structures%3B EXPRESSED DURING: M germinated pollen stage%2C 4 anthesis%2C C globular stage%2C 4 leaf senescence stage%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF81 (InterPro:IPR002781)%3B BEST Arabidopsis thaliana protein match is: Sulfite exporter TauE/SafE family protein (TAIR:AT1G61740.1)%3B Has 3200 Blast hits to 2964 proteins in 743 species: Archae - 110%3B Bacteria - 1734%3B Metazoa - 0%3B Fungi - 0%3B Plants - 195%3B Viruses - 0%3B Other Eukaryotes - 1161 (source: NCBI BLink).; Dbxref=PMID:16299181, PMID:17061125, PMID:18650403, PMID:18775970, PMID:20736450, locus:2200061; locus_type=protein_coding
AT1G11545.1	chr1:003878689	0.0	C/3878689-3879097,3879508-3879710,3879809-3879909,3880082-3880286	AT1G11545.1 CDS AT1G11545 ID=AT1G11545.1; Parent=AT1G11545; Name=AT1G11545.1; Note=xyloglucan endotransglucosylase/hydrolase 8; conf_class=2; symbol=XTH8; full_name=xyloglucan endotransglucosylase/hydrolase 8; computational_description=xyloglucan endotransglucosylase/hydrolase 8 (XTH8)%3B FUNCTIONS IN: hydrolase activity%2C acting on glycosyl bonds%2C xyloglucan:xyloglucosyl transferase activity%2C hydrolase activity%2C hydrolyzing O-glycosyl compounds%3B INVOLVED IN: carbohydrate metabolic process%2C cellular glucan metabolic process%3B LOCATED IN: endomembrane system%2C cell wall%2C apoplast%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455)%2C Beta-glucanase (InterPro:IPR008264)%2C Xyloglucan endo-transglycosylase%2C C-terminal (InterPro:IPR010713)%2C Concanavalin A-like lectin/glucanase%2C subgroup (InterPro:IPR013320)%2C Glycoside hydrolase%2C family 16%2C active site (InterPro:IPR008263)%2C Concanavalin A-like lectin/glucanase (InterPro:IPR008985)%2C Glycoside hydrolase%2C family 16 (InterPro:IPR000757)%3B BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 7 (TAIR:AT4G37800.1)%3B Has 2134 Blast hits to 2114 proteins in 302 species: Archae - 0%3B Bacteria - 267%3B Metazoa - 0%3B Fungi - 408%3B Plants - 1375%3B Viruses - 0%3B Other Eukaryotes - 84 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11673616, PMID:15720654, PMID:16412086, PMID:17435085, PMID:18252844, PMID:18650403, PMID:18805951, PMID:20007967, locus:2823919; locus_type=protein_coding
AT1G11550.1	chr1:003881529	0.0	W/3881529-3881608	AT1G11550.1 tRNA AT1G11550 ID=AT1G11550.1; Parent=AT1G11550; Note=tRNA-Leu; computational_description=tRNA-Leu (anticodon: TAG); Dbxref=PMID:8980477, PMID:23066098, PMID:8980477, locus:3692552; Name=AT1G11550.1; locus_type=pre_trna
AT1G11560.1	chr1:003881788	0.0	W/3881788-3882819	AT1G11560.1 CDS AT1G11560 ID=AT1G11560.1; Parent=AT1G11560; Name=AT1G11560.1; Note=Oligosaccharyltransferase complex/magnesium transporter family protein; conf_class=4; computational_description=Oligosaccharyltransferase complex/magnesium transporter family protein%3B FUNCTIONS IN: oligosaccharide transmembrane transporter activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: flower%3B EXPRESSED DURING: 4 anthesis%3B CONTAINS InterPro DOMAIN/s: Magnesium transporter protein 1 (InterPro:IPR006844)%2C Oligosaccharyltransferase complex/magnesium transporter (InterPro:IPR021149)%3B BEST Arabidopsis thaliana protein match is: Oligosaccharyltransferase complex/magnesium transporter family protein (TAIR:AT1G61790.1)%3B Has 312 Blast hits to 312 proteins in 105 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 155%3B Fungi - 44%3B Plants - 93%3B Viruses - 0%3B Other Eukaryotes - 20 (source: NCBI BLink).; conf_rating=***; Dbxref=locus:2200086; locus_type=protein_coding
AT1G11570.3	chr1:003883217	0.0	W/3883217-3883603,3883882-3883956	AT1G11570.3 CDS AT1G11570 ID=AT1G11570.3; Parent=AT1G11570; Name=AT1G11570.3; Note=NTF2-like protein; symbol=NTL; full_name=NTF2-like; computational_description=NTF2-like (NTL)%3B FUNCTIONS IN: protein transporter activity%3B INVOLVED IN: transport%2C protein import into nucleus%3B LOCATED IN: nucleus%2C intracellular%3B EXPRESSED IN: leaf whorl%2C sperm cell%2C flower%2C pedicel%3B EXPRESSED DURING: 4 anthesis%3B CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075)%2C Nuclear transport factor 2%2C Eukaryote (InterPro:IPR018222)%3B BEST Arabidopsis thaliana protein match is: nuclear transport factor 2A (TAIR:AT1G27310.1)%3B Has 836 Blast hits to 836 proteins in 219 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 487%3B Fungi - 161%3B Plants - 110%3B Viruses - 0%3B Other Eukaryotes - 78 (source: NCBI BLink).; Dbxref=PMID:15496452, PMID:16428596, locus:2200066; locus_type=protein_coding
AT1G11570.4	chr1:003883217	0.0	W/3883217-3883663	AT1G11570.4 CDS AT1G11570 ID=AT1G11570.4; Parent=AT1G11570; Name=AT1G11570.4; Note=NTF2-like protein; symbol=NTL; full_name=NTF2-like; computational_description=NTF2-like (NTL)%3B FUNCTIONS IN: protein transporter activity%3B INVOLVED IN: transport%2C protein import into nucleus%3B LOCATED IN: nucleus%2C intracellular%3B EXPRESSED IN: leaf whorl%2C sperm cell%2C flower%2C pedicel%3B EXPRESSED DURING: 4 anthesis%3B CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075)%2C Nuclear transport factor 2%2C Eukaryote (InterPro:IPR018222)%3B BEST Arabidopsis thaliana protein match is: nuclear transport factor 2A (TAIR:AT1G27310.1)%3B Has 836 Blast hits to 836 proteins in 219 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 487%3B Fungi - 161%3B Plants - 110%3B Viruses - 0%3B Other Eukaryotes - 78 (source: NCBI BLink).; Dbxref=PMID:15496452, PMID:16428596, locus:2200066; locus_type=protein_coding
AT1G11570.1	chr1:003883280	0.0	W/3883280-3883663	AT1G11570.1 CDS AT1G11570 ID=AT1G11570.1; Parent=AT1G11570; Name=AT1G11570.1; Note=NTF2-like protein; conf_class=4; symbol=NTL; full_name=NTF2-like; computational_description=NTF2-like (NTL)%3B FUNCTIONS IN: protein transporter activity%3B INVOLVED IN: transport%2C protein import into nucleus%3B LOCATED IN: nucleus%2C intracellular%3B EXPRESSED IN: leaf whorl%2C sperm cell%2C flower%2C pedicel%3B EXPRESSED DURING: 4 anthesis%3B CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075)%2C Nuclear transport factor 2%2C Eukaryote (InterPro:IPR018222)%3B BEST Arabidopsis thaliana protein match is: nuclear transport factor 2A (TAIR:AT1G27310.1)%3B Has 836 Blast hits to 836 proteins in 219 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 487%3B Fungi - 161%3B Plants - 110%3B Viruses - 0%3B Other Eukaryotes - 78 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:15496452, PMID:16428596, locus:2200066; locus_type=protein_coding
AT1G11570.2	chr1:003883280	0.0	W/3883280-3883603,3883882-3883956	AT1G11570.2 CDS AT1G11570 ID=AT1G11570.2; Parent=AT1G11570; Name=AT1G11570.2; Note=NTF2-like protein; conf_class=1; symbol=NTL; full_name=NTF2-like; computational_description=NTF2-like (NTL)%3B FUNCTIONS IN: protein transporter activity%3B INVOLVED IN: transport%2C protein import into nucleus%3B LOCATED IN: nucleus%2C intracellular%3B EXPRESSED IN: leaf whorl%2C sperm cell%2C flower%2C pedicel%3B EXPRESSED DURING: 4 anthesis%3B CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075)%2C Nuclear transport factor 2%2C Eukaryote (InterPro:IPR018222)%3B BEST Arabidopsis thaliana protein match is: nuclear transport factor 2A (TAIR:AT1G27310.1)%3B Has 836 Blast hits to 836 proteins in 219 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 487%3B Fungi - 161%3B Plants - 110%3B Viruses - 0%3B Other Eukaryotes - 78 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15496452, PMID:16428596, locus:2200066; locus_type=protein_coding
AT1G11572.1	chr1:003884455	0.0	W/3884455-3884724	AT1G11572.1 CDS AT1G11572 ID=AT1G11572.1; Parent=AT1G11572; Name=AT1G11572.1; Note=Plant thionin family protein; curator_summary=Encodes a Plant thionin family protein; conf_class=4; computational_description=Plant thionin family protein%3B LOCATED IN: endomembrane system%3B Has 7 Blast hits to 7 proteins in 4 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 7%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=***; Dbxref=locus:4010713432; locus_type=protein_coding
AT1G11580.2	chr1:003888667	0.0	W/3888667-3889446,3889601-3889865,3889958-3890649	AT1G11580.2 CDS AT1G11580 ID=AT1G11580.2; Parent=AT1G11580; Name=AT1G11580.2; Note=methylesterase PCR A; symbol=PMEPCRA; Alias=ATPMEPCRA; full_name=methylesterase PCR A; computational_description=methylesterase PCR A (PMEPCRA)%3B FUNCTIONS IN: enzyme inhibitor activity%2C pectinesterase activity%3B INVOLVED IN: cell wall modification%3B LOCATED IN: cell wall%2C plasma membrane%2C plant-type cell wall%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Pectinesterase%2C active site (InterPro:IPR018040)%2C Pectin lyase fold/virulence factor (InterPro:IPR011050)%2C Pectinesterase inhibitor (InterPro:IPR006501)%2C Pectinesterase%2C catalytic (InterPro:IPR000070)%2C Pectin lyase fold (InterPro:IPR012334)%3B BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT1G11590.1)%3B Has 3127 Blast hits to 3075 proteins in 484 species: Archae - 6%3B Bacteria - 913%3B Metazoa - 1%3B Fungi - 197%3B Plants - 1984%3B Viruses - 0%3B Other Eukaryotes - 26 (source: NCBI BLink).; Dbxref=PMID:9767082, PMID:12368499, PMID:12535341, PMID:12753585, PMID:12805628, PMID:14595688, PMID:15215502, PMID:15272873, PMID:16299171, PMID:16489130, PMID:16622707, PMID:16920880, PMID:17172353, PMID:17153927, PMID:18650403, PMID:18796151, PMID:18854047, PMID:23289948, PMID:24367018, locus:2200076; locus_type=protein_coding
AT1G11580.1	chr1:003888730	0.0	W/3888730-3889446,3889601-3889865,3889958-3890649	AT1G11580.1 CDS AT1G11580 ID=AT1G11580.1; Parent=AT1G11580; Name=AT1G11580.1; Note=methylesterase PCR A; conf_class=2; symbol=PMEPCRA; Alias=ATPMEPCRA; full_name=methylesterase PCR A; computational_description=methylesterase PCR A (PMEPCRA)%3B FUNCTIONS IN: enzyme inhibitor activity%2C pectinesterase activity%3B INVOLVED IN: cell wall modification%3B LOCATED IN: cell wall%2C plasma membrane%2C plant-type cell wall%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Pectinesterase%2C active site (InterPro:IPR018040)%2C Pectin lyase fold/virulence factor (InterPro:IPR011050)%2C Pectinesterase inhibitor (InterPro:IPR006501)%2C Pectinesterase%2C catalytic (InterPro:IPR000070)%2C Pectin lyase fold (InterPro:IPR012334)%3B BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT1G11590.1)%3B Has 3127 Blast hits to 3075 proteins in 484 species: Archae - 6%3B Bacteria - 913%3B Metazoa - 1%3B Fungi - 197%3B Plants - 1984%3B Viruses - 0%3B Other Eukaryotes - 26 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9767082, PMID:12368499, PMID:12535341, PMID:12753585, PMID:12805628, PMID:14595688, PMID:15215502, PMID:15272873, PMID:16299171, PMID:16489130, PMID:16622707, PMID:16920880, PMID:17172353, PMID:17153927, PMID:18650403, PMID:18796151, PMID:18854047, PMID:23289948, PMID:24367018, locus:2200076; locus_type=protein_coding
AT1G04857.1	chr1:003891770	0.0	C/3891770-3891972	AT1G04857.1 lnc_RNA AT1G04857 ID=AT1G04857.1; Parent=AT1G04857; Name=AT1G04857.1; locus_type=long_noncoding_rna
AT1G11590.1	chr1:003892634	0.0	W/3892634-3893257,3893563-3893827,3893935-3894620	AT1G11590.1 CDS AT1G11590 ID=AT1G11590.1; Parent=AT1G11590; Name=AT1G11590.1; Note=Plant invertase/pectin methylesterase inhibitor superfamily; conf_class=1; computational_description=Plant invertase/pectin methylesterase inhibitor superfamily%3B FUNCTIONS IN: enzyme inhibitor activity%2C pectinesterase activity%3B INVOLVED IN: cell wall modification%3B LOCATED IN: endomembrane system%2C cell wall%2C plant-type cell wall%3B EXPRESSED IN: flower%3B CONTAINS InterPro DOMAIN/s: Pectinesterase%2C active site (InterPro:IPR018040)%2C Pectin lyase fold/virulence factor (InterPro:IPR011050)%2C Pectinesterase%2C catalytic (InterPro:IPR000070)%2C Pectinesterase inhibitor (InterPro:IPR006501)%2C Pectin lyase fold (InterPro:IPR012334)%3B BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT4G03930.1)%3B Has 2848 Blast hits to 2802 proteins in 417 species: Archae - 6%3B Bacteria - 792%3B Metazoa - 1%3B Fungi - 192%3B Plants - 1830%3B Viruses - 0%3B Other Eukaryotes - 27 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16622707, PMID:25572606, locus:2200121; locus_type=protein_coding
AT1TE12660	chr1:003894686	0.0	W/3894686-3894779	AT1TE12660 transposable_element AT1TE12660 ID=AT1TE12660; Name=AT1TE12660; Alias=ATCOPIA37
AT1TE12665	chr1:003895094	0.0	W/3895094-3895353,3895399-3895672,3896272-3896401,3896415-3896670,3896812-3897046	AT1TE12665 transposable_element AT1TE12665 ID=AT1TE12665; Name=AT1TE12665; Alias=ATCOPIA37
AT1G11591.1	chr1:003895130	0.0	W/3895130-3895268,3895312-3895511,3895631-3895919,3896012-3896019	AT1G11591.1 CDS AT1G11591 ID=AT1G11591.1; Parent=AT1G11591; Name=AT1G11591.1; Note=hypothetical protein; locus_type=protein_coding
AT1G11592.2	chr1:003895179	0.0	C/3895179-3896917	AT1G11592.2 ncRNA AT1G11592 ID=AT1G11592.2; Parent=AT1G11592; Name=AT1G11592.2; index=1; curator_summary=Unknown gene; Dbxref=locus:4010713433; Note=other_RNA; locus_type=other_rna
AT1G11592.1	chr1:003895268	0.0	C/3895268-3896934	AT1G11592.1 ncRNA AT1G11592 ID=AT1G11592.1; Parent=AT1G11592; Name=AT1G11592.1; index=1; curator_summary=Unknown gene; Dbxref=locus:4010713433; Note=other_RNA; locus_type=other_rna
AT1TE12670	chr1:003897047	0.0	C/3897047-3897177	AT1TE12670 transposable_element AT1TE12670 ID=AT1TE12670; Name=AT1TE12670; Alias=HELITRONY3
AT1TE12675	chr1:003897178	0.0	C/3897178-3898168	AT1TE12675 transposable_element AT1TE12675 ID=AT1TE12675; Name=AT1TE12675; Alias=ATDNA2T9C
AT1G11593.1	chr1:003898002	0.0	W/3898002-3898571	AT1G11593.1 CDS AT1G11593 ID=AT1G11593.1; Parent=AT1G11593; Name=AT1G11593.1; Note=Plant invertase/pectin methylesterase inhibitor superfamily protein; conf_class=1; computational_description=Plant invertase/pectin methylesterase inhibitor superfamily protein%3B FUNCTIONS IN: enzyme inhibitor activity%2C pectinesterase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501)%3B BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT3G27999.1)%3B Has 71 Blast hits to 67 proteins in 7 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 71%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:5019474609; locus_type=protein_coding
AT1G11595.1	chr1:003898631	0.0	W/3898631-3899699	AT1G11595.1 pseudogenic_transcript AT1G11595 ID=AT1G11595.1; Parent=AT1G11595; Name=AT1G11595.1; index=1; Note=pseudogene; computational_description=pseudogene%2C putative glucose 6 phosphate/phosphate translocator%2C blastp match of 60%25 identity and 2.3e-78 P-value to GP|2997593|gb|AAC08526.1||AF020816 glucose-6-phosphate/phosphate-translocator precursor %7BSolanum tuberosum%7D; Dbxref=PMID:20032078, locus:2823929, PMID:20032078, PMID:20032078, locus:2823929; locus_type=pseudogene
AT1G11600.1	chr1:003902090	0.0	W/3902090-3903622	AT1G11600.1 CDS AT1G11600 ID=AT1G11600.1; Parent=AT1G11600; Name=AT1G11600.1; Note=cytochrome P450%2C family 77%2C subfamily B%2C polypeptide 1; curator_summary=member of CYP77B; conf_class=1; symbol=CYP77B1; full_name=cytochrome P450%2C family 77%2C subfamily B%2C polypeptide 1; computational_description=cytochrome P450%2C family 77%2C subfamily B%2C polypeptide 1 (CYP77B1)%3B FUNCTIONS IN: electron carrier activity%2C monooxygenase activity%2C iron ion binding%2C oxygen binding%2C heme binding%3B INVOLVED IN: oxidation reduction%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128)%2C Cytochrome P450%2C E-class%2C group I (InterPro:IPR002401)%2C Cytochrome P450%2C conserved site (InterPro:IPR017972)%3B BEST Arabidopsis thaliana protein match is: cytochrome P450%2C family 77%2C subfamily A%2C polypeptide 9 (TAIR:AT5G04630.1)%3B Has 32592 Blast hits to 32103 proteins in 1633 species: Archae - 48%3B Bacteria - 3170%3B Metazoa - 12143%3B Fungi - 6852%3B Plants - 9226%3B Viruses - 3%3B Other Eukaryotes - 1150 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12753585, PMID:15272001, locus:2027412; locus_type=protein_coding
AT1G11608.1	chr1:003906266	0.0	W/3906266-3906520	AT1G11608.1 CDS AT1G11608 ID=AT1G11608.1; Parent=AT1G11608; Name=AT1G11608.1; Note=F-box associated ubiquitination effector family protein; conf_class=1; computational_description=F-box associated ubiquitination effector family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: F-box associated domain%2C type 1 (InterPro:IPR006527)%3B BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT1G11620.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:4515102520; locus_type=protein_coding
AT1G11610.2	chr1:003906983	0.0	C/3906983-3907051,3907509-3907790,3907885-3908169,3908260-3908751,3908905-3909291	AT1G11610.2 CDS AT1G11610 ID=AT1G11610.2; Parent=AT1G11610; Name=AT1G11610.2; Note=cytochrome P450%2C family 71%2C subfamily A%2C polypeptide 18; curator_summary=putative cytochrome P450; conf_class=6; symbol=CYP71A18; full_name=cytochrome P450%2C family 71%2C subfamily A%2C polypeptide 18; computational_description=cytochrome P450%2C family 71%2C subfamily A%2C polypeptide 18 (CYP71A18)%3B FUNCTIONS IN: electron carrier activity%2C monooxygenase activity%2C iron ion binding%2C oxygen binding%2C heme binding%3B INVOLVED IN: oxidation reduction%3B CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128)%2C Cytochrome P450%2C conserved site (InterPro:IPR017972)%2C Cytochrome P450%2C E-class%2C group I (InterPro:IPR002401)%3B BEST Arabidopsis thaliana protein match is: cytochrome P450%2C family 71%2C subfamily A%2C polypeptide 13 (TAIR:AT2G30770.1)%3B Has 34927 Blast hits to 34697 proteins in 1764 species: Archae - 51%3B Bacteria - 4686%3B Metazoa - 11898%3B Fungi - 7343%3B Plants - 9704%3B Viruses - 3%3B Other Eukaryotes - 1242 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:11115874, PMID:15148388, locus:2027407; locus_type=protein_coding
AT1G11610.1	chr1:003907461	0.0	C/3907461-3907790,3907885-3908169,3908260-3908751,3908905-3909291	AT1G11610.1 CDS AT1G11610 ID=AT1G11610.1; Parent=AT1G11610; Name=AT1G11610.1; Note=cytochrome P450%2C family 71%2C subfamily A%2C polypeptide 18; curator_summary=putative cytochrome P450; conf_class=4; symbol=CYP71A18; full_name=cytochrome P450%2C family 71%2C subfamily A%2C polypeptide 18; computational_description=cytochrome P450%2C family 71%2C subfamily A%2C polypeptide 18 (CYP71A18)%3B FUNCTIONS IN: electron carrier activity%2C monooxygenase activity%2C iron ion binding%2C oxygen binding%2C heme binding%3B INVOLVED IN: oxidation reduction%3B CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128)%2C Cytochrome P450%2C conserved site (InterPro:IPR017972)%2C Cytochrome P450%2C E-class%2C group I (InterPro:IPR002401)%3B BEST Arabidopsis thaliana protein match is: cytochrome P450%2C family 71%2C subfamily A%2C polypeptide 13 (TAIR:AT2G30770.1)%3B Has 34927 Blast hits to 34697 proteins in 1764 species: Archae - 51%3B Bacteria - 4686%3B Metazoa - 11898%3B Fungi - 7343%3B Plants - 9704%3B Viruses - 3%3B Other Eukaryotes - 1242 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:11115874, PMID:15148388, locus:2027407; locus_type=protein_coding
AT1TE12710	chr1:003909919	0.0	C/3909919-3909941	AT1TE12710 transposable_element AT1TE12710 ID=AT1TE12710; Name=AT1TE12710; Alias=BRODYAGA2
AT1TE12715	chr1:003909942	0.0	W/3909942-3910026	AT1TE12715 transposable_element AT1TE12715 ID=AT1TE12715; Name=AT1TE12715; Alias=ATREP4
AT1TE12720	chr1:003910027	0.0	C/3910027-3910701	AT1TE12720 transposable_element AT1TE12720 ID=AT1TE12720; Name=AT1TE12720; Alias=ATREP3
AT1TE12725	chr1:003910702	0.0	W/3910702-3910762	AT1TE12725 transposable_element AT1TE12725 ID=AT1TE12725; Name=AT1TE12725; Alias=HELITRON4
AT1G11620.1	chr1:003910833	0.0	W/3910833-3911924	AT1G11620.1 CDS AT1G11620 ID=AT1G11620.1; Parent=AT1G11620; Name=AT1G11620.1; Note=F-box and associated interaction domains-containing protein; conf_class=8; computational_description=F-box and associated interaction domains-containing protein%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%2C F-box associated domain%2C type 1 (InterPro:IPR006527)%2C F-box associated interaction domain (InterPro:IPR017451)%3B BEST Arabidopsis thaliana protein match is: F-box associated ubiquitination effector family protein (TAIR:AT1G31510.1)%3B Has 2174 Blast hits to 2137 proteins in 54 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 2172%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=*; Dbxref=locus:2027397; locus_type=protein_coding
AT1G11630.1	chr1:003913168	0.0	C/3913168-3914385	AT1G11630.1 CDS AT1G11630 ID=AT1G11630.1; Parent=AT1G11630; Name=AT1G11630.1; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; conf_class=1; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: pentatricopeptide repeat 336 (TAIR:AT1G61870.1)%3B Has 27426 Blast hits to 8035 proteins in 245 species: Archae - 4%3B Bacteria - 14%3B Metazoa - 220%3B Fungi - 290%3B Plants - 26279%3B Viruses - 0%3B Other Eukaryotes - 619 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14671022, PMID:15269332, PMID:18054044, PMID:20736450, locus:2027387; locus_type=protein_coding
AT1G11640.1	chr1:003914622	0.0	C/3914622-3914700	AT1G11640.1 tRNA AT1G11640 ID=AT1G11640.1; Parent=AT1G11640; Note=tRNA-Trp; computational_description=tRNA-Trp (anticodon: CCA); Dbxref=PMID:8980477, PMID:23066098, PMID:8980477, locus:3689519; Name=AT1G11640.1; locus_type=pre_trna
AT1G11650.1	chr1:003914895	0.0	W/3914895-3915155,3915428-3915893,3917021-3917079,3917167-3917301	AT1G11650.1 CDS AT1G11650 ID=AT1G11650.1; Parent=AT1G11650; Name=AT1G11650.1; Note=RNA-binding (RRM/RBD/RNP motifs) family protein; curator_summary=Encodes an RNA binding protein with three RNA recognition motifs.; conf_class=2; symbol=RBP45B; computational_description=RBP45B%3B FUNCTIONS IN: RNA binding%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 16 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding protein 45A (TAIR:AT5G54900.1)%3B Has 20995 Blast hits to 13178 proteins in 763 species: Archae - 6%3B Bacteria - 1690%3B Metazoa - 10875%3B Fungi - 2403%3B Plants - 4255%3B Viruses - 0%3B Other Eukaryotes - 1766 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11105760, PMID:17828791, PMID:18775970, PMID:19053141, PMID:21120628, PMID:24064926, locus:2027372; locus_type=protein_coding
AT1G11650.2	chr1:003914895	0.0	W/3914895-3915155,3915428-3915893,3917021-3917079,3917167-3917297,3917416-3917512,3917738-3917941	AT1G11650.2 CDS AT1G11650 ID=AT1G11650.2; Parent=AT1G11650; Name=AT1G11650.2; Note=RNA-binding (RRM/RBD/RNP motifs) family protein; curator_summary=Encodes an RNA binding protein with three RNA recognition motifs.; conf_class=2; symbol=RBP45B; computational_description=RBP45B%3B FUNCTIONS IN: RNA binding%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 16 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding protein 45A (TAIR:AT5G54900.1)%3B Has 20995 Blast hits to 13178 proteins in 763 species: Archae - 6%3B Bacteria - 1690%3B Metazoa - 10875%3B Fungi - 2403%3B Plants - 4255%3B Viruses - 0%3B Other Eukaryotes - 1766 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11105760, PMID:17828791, PMID:18775970, PMID:19053141, PMID:21120628, PMID:24064926, locus:2027372; locus_type=protein_coding
AT1TE12750	chr1:003918677	0.0	W/3918677-3919183	AT1TE12750 transposable_element AT1TE12750 ID=AT1TE12750; Name=AT1TE12750; Alias=ATREP5
AT1G11655.1	chr1:003919338	0.0	W/3919338-3919679	AT1G11655.1 CDS AT1G11655 ID=AT1G11655.1; Parent=AT1G11655; Name=AT1G11655.1; Note=hypothetical protein; conf_class=1; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21902.1)%3B Has 22 Blast hits to 22 proteins in 6 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 22%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15276459, PMID:24119003, locus:504956258; locus_type=protein_coding
AT1G11660.1	chr1:003921056	0.0	W/3921056-3922228,3922382-3922594,3922732-3922827,3922915-3923025,3923184-3923375,3923491-3923637,3923721-3923849,3923981-3924111,3924248-3924347	AT1G11660.1 CDS AT1G11660 ID=AT1G11660.1; Parent=AT1G11660; Name=AT1G11660.1; Note=heat shock protein 70 (Hsp 70) family protein; conf_class=4; computational_description=heat shock protein 70 (Hsp 70) family protein%3B FUNCTIONS IN: ATP binding%3B INVOLVED IN: protein folding%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp70 (InterPro:IPR001023)%2C Heat shock protein 70 (InterPro:IPR013126)%3B BEST Arabidopsis thaliana protein match is: Heat shock protein 70 (Hsp 70) family protein (TAIR:AT1G79920.1)%3B Has 25020 Blast hits to 24886 proteins in 4391 species: Archae - 151%3B Bacteria - 11311%3B Metazoa - 3542%3B Fungi - 1480%3B Plants - 1013%3B Viruses - 97%3B Other Eukaryotes - 7426 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:18650403, PMID:18775970, PMID:18854047, locus:2027337; locus_type=protein_coding
AT1G11660.3	chr1:003921056	0.0	W/3921056-3922228,3922382-3922594,3922732-3922827,3922915-3923025,3923184-3923375,3923491-3923637,3923721-3923849,3923981-3924111,3924248-3924347	AT1G11660.3 CDS AT1G11660 ID=AT1G11660.3; Parent=AT1G11660; Name=AT1G11660.3; Note=heat shock protein 70 (Hsp 70) family protein; Dbxref=PMID:18650403, PMID:18775970, PMID:18854047, locus:2027337; computational_description=heat shock protein 70 (Hsp 70) family protein%3B FUNCTIONS IN: ATP binding%3B INVOLVED IN: protein folding%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp70 (InterPro:IPR001023)%2C Heat shock protein 70 (InterPro:IPR013126)%3B BEST Arabidopsis thaliana protein match is: Heat shock protein 70 (Hsp 70) family protein (TAIR:AT1G79920.1)%3B Has 25020 Blast hits to 24886 proteins in 4391 species: Archae - 151%3B Bacteria - 11311%3B Metazoa - 3542%3B Fungi - 1480%3B Plants - 1013%3B Viruses - 97%3B Other Eukaryotes - 7426 (source: NCBI BLink).; locus_type=protein_coding
AT1G11660.4	chr1:003921056	0.0	W/3921056-3922228,3922382-3922594,3922732-3922827,3922915-3923025,3923184-3923375,3923491-3923637,3923721-3923849,3923981-3924111,3924248-3924347	AT1G11660.4 CDS AT1G11660 ID=AT1G11660.4; Parent=AT1G11660; Name=AT1G11660.4; Note=heat shock protein 70 (Hsp 70) family protein; Dbxref=PMID:18650403, PMID:18775970, PMID:18854047, locus:2027337; computational_description=heat shock protein 70 (Hsp 70) family protein%3B FUNCTIONS IN: ATP binding%3B INVOLVED IN: protein folding%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp70 (InterPro:IPR001023)%2C Heat shock protein 70 (InterPro:IPR013126)%3B BEST Arabidopsis thaliana protein match is: Heat shock protein 70 (Hsp 70) family protein (TAIR:AT1G79920.1)%3B Has 25020 Blast hits to 24886 proteins in 4391 species: Archae - 151%3B Bacteria - 11311%3B Metazoa - 3542%3B Fungi - 1480%3B Plants - 1013%3B Viruses - 97%3B Other Eukaryotes - 7426 (source: NCBI BLink).; locus_type=protein_coding
AT1G11660.2	chr1:003921167	0.0	W/3921167-3922228,3922382-3922594,3922732-3922827,3922915-3923025,3923184-3923375,3923491-3923637,3923721-3923849,3923981-3924111,3924248-3924347	AT1G11660.2 CDS AT1G11660 ID=AT1G11660.2; Parent=AT1G11660; Name=AT1G11660.2; Note=heat shock protein 70 (Hsp 70) family protein; computational_description=heat shock protein 70 (Hsp 70) family protein%3B FUNCTIONS IN: ATP binding%3B INVOLVED IN: protein folding%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp70 (InterPro:IPR001023)%2C Heat shock protein 70 (InterPro:IPR013126)%3B BEST Arabidopsis thaliana protein match is: Heat shock protein 70 (Hsp 70) family protein (TAIR:AT1G79920.1)%3B Has 25020 Blast hits to 24886 proteins in 4391 species: Archae - 151%3B Bacteria - 11311%3B Metazoa - 3542%3B Fungi - 1480%3B Plants - 1013%3B Viruses - 97%3B Other Eukaryotes - 7426 (source: NCBI BLink).; Dbxref=PMID:18650403, PMID:18775970, PMID:18854047, locus:2027337; locus_type=protein_coding
AT1TE12770	chr1:003925331	0.0	C/3925331-3926124	AT1TE12770 transposable_element AT1TE12770 ID=AT1TE12770; Name=AT1TE12770; Alias=ATCOPIA30
AT1TE12775	chr1:003926904	0.0	W/3926904-3927654	AT1TE12775 transposable_element AT1TE12775 ID=AT1TE12775; Name=AT1TE12775; Alias=HELITRONY3
AT1G11670.1	chr1:003928520	0.0	C/3928520-3928582,3928700-3928786,3928887-3929005,3929096-3929334,3929437-3929493,3930276-3930907,3931168-3931482	AT1G11670.1 CDS AT1G11670 ID=AT1G11670.1; Parent=AT1G11670; Name=AT1G11670.1; Note=MATE efflux family protein; conf_class=2; computational_description=MATE efflux family protein%3B FUNCTIONS IN: antiporter activity%2C drug transmembrane transporter activity%2C transporter activity%3B INVOLVED IN: drug transmembrane transport%2C N-terminal protein myristoylation%2C transmembrane transport%3B LOCATED IN: membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528)%3B BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G61890.1)%3B Has 11525 Blast hits to 11473 proteins in 2135 species: Archae - 258%3B Bacteria - 8318%3B Metazoa - 144%3B Fungi - 328%3B Plants - 1428%3B Viruses - 0%3B Other Eukaryotes - 1049 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12169696, PMID:12753585, PMID:12912986, PMID:17061125, PMID:18650403, locus:2027322; locus_type=protein_coding
AT1TE12785	chr1:003931963	0.0	W/3931963-3932217	AT1TE12785 transposable_element AT1TE12785 ID=AT1TE12785; Name=AT1TE12785; Alias=ATREP19
AT1TE12790	chr1:003932218	0.0	C/3932218-3932527	AT1TE12790 transposable_element AT1TE12790 ID=AT1TE12790; Name=AT1TE12790; Alias=DT1
AT1TE12795	chr1:003932528	0.0	C/3932528-3932593	AT1TE12795 transposable_element AT1TE12795 ID=AT1TE12795; Name=AT1TE12795; Alias=ATREP10D
AT1TE12800	chr1:003932594	0.0	W/3932594-3932787	AT1TE12800 transposable_element AT1TE12800 ID=AT1TE12800; Name=AT1TE12800; Alias=HELITRONY1D
AT1TE12810	chr1:003936019	0.0	C/3936019-3937146	AT1TE12810 transposable_element AT1TE12810 ID=AT1TE12810; Name=AT1TE12810; Alias=ATREP3
AT1G04863.1	chr1:003937246	0.0	C/3937246-3937780	AT1G04863.1 lnc_RNA AT1G04863 ID=AT1G04863.1; Parent=AT1G04863; Name=AT1G04863.1; locus_type=long_noncoding_rna
AT1G11680.1	chr1:003938925	0.0	W/3938925-3939398,3939593-3940585	AT1G11680.1 CDS AT1G11680 ID=AT1G11680.1; Parent=AT1G11680; Name=AT1G11680.1; Note=CYTOCHROME P450 51G1; curator_summary=putative obtusifoliol 14-alpha demethylase involved in sterol biosynthesis.; conf_class=2; symbol=CYP51G1; Alias=CYP51A2, CYTOCHROME P450 51A2, CYP51, CYTOCHROME P450 51, EMB1738, embryo defective 1738, atCYP51, CYTOCHROME P450 51; full_name=CYTOCHROME P450 51G1; computational_description=CYTOCHROME P450 51G1 (CYP51G1)%3B FUNCTIONS IN: sterol 14-demethylase activity%2C oxygen binding%3B INVOLVED IN: sterol biosynthetic process%2C embryo development ending in seed dormancy%3B LOCATED IN: endoplasmic reticulum%2C plasma membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128)%2C Cytochrome P450%2C E-class%2C group IV (InterPro:IPR002403)%2C Cytochrome P450%2C conserved site (InterPro:IPR017972)%3B BEST Arabidopsis thaliana protein match is: cytochrome P450%2C family 707%2C subfamily A%2C polypeptide 4 (TAIR:AT3G19270.1)%3B Has 30265 Blast hits to 30215 proteins in 1662 species: Archae - 71%3B Bacteria - 5605%3B Metazoa - 9913%3B Fungi - 5125%3B Plants - 8048%3B Viruses - 6%3B Other Eukaryotes - 1497 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10855798, PMID:11437378, PMID:12468722, PMID:16040657, PMID:16169959, PMID:16618929, PMID:19915013, PMID:23335967, PMID:23551583, locus:2027312; locus_type=protein_coding
AT1G11684.1	chr1:003941103	0.0	C/3941103-3941300	AT1G11684.1 CDS AT1G11684 ID=AT1G11684.1; Parent=AT1G11684; Name=AT1G11684.1; Note=hypothetical protein; conf_class=10; computational_description=unknown protein%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=PMID:17395691, locus:4515102521; locus_type=protein_coding
AT1G11690.1	chr1:003941469	0.0	W/3941469-3942212	AT1G11690.1 CDS AT1G11690 ID=AT1G11690.1; Parent=AT1G11690; Name=AT1G11690.1; Note=BRANCHLESS TRICHOME-like protein; conf_class=8; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20350.1)%3B Has 5959 Blast hits to 4807 proteins in 476 species: Archae - 156%3B Bacteria - 436%3B Metazoa - 2789%3B Fungi - 309%3B Plants - 336%3B Viruses - 9%3B Other Eukaryotes - 1924 (source: NCBI BLink).; conf_rating=*; Dbxref=PMID:17915010, PMID:20226671, locus:2027402; locus_type=protein_coding
AT1G04867.1	chr1:003943179	0.0	W/3943179-3943430	AT1G04867.1 ncRNA AT1G04867 ID=AT1G04867.1; Parent=AT1G04867; Name=AT1G04867.1; locus_type=other_rna
AT1TE12830	chr1:003944738	0.0	W/3944738-3944925	AT1TE12830 transposable_element AT1TE12830 ID=AT1TE12830; Name=AT1TE12830; Alias=BRODYAGA1A
AT1G11700.1	chr1:003945852	0.0	W/3945852-3946457	AT1G11700.1 CDS AT1G11700 ID=AT1G11700.1; Parent=AT1G11700; Name=AT1G11700.1; Note=senescence regulator (Protein of unknown function%2C DUF584); conf_class=1; computational_description=Protein of unknown function%2C DUF584%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF584 (InterPro:IPR007608)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function%2C DUF584 (TAIR:AT1G61930.1)%3B Has 334 Blast hits to 333 proteins in 24 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 4%3B Plants - 328%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:20736450, locus:2027392; locus_type=protein_coding
AT1G11710.1	chr1:003948886	0.0	W/3948886-3950859	AT1G11710.1 CDS AT1G11710 ID=AT1G11710.1; Parent=AT1G11710; Name=AT1G11710.1; Note=Pentatricopeptide repeat (PPR) superfamily protein; conf_class=1; computational_description=Pentatricopeptide repeat (PPR) superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G01110.1)%3B Has 45515 Blast hits to 13277 proteins in 292 species: Archae - 2%3B Bacteria - 53%3B Metazoa - 430%3B Fungi - 426%3B Plants - 43316%3B Viruses - 0%3B Other Eukaryotes - 1288 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:2027382; locus_type=protein_coding
AT1G11710.2	chr1:003948886	0.0	W/3948886-3949265,3949353-3950859	AT1G11710.2 CDS AT1G11710 ID=AT1G11710.2; Parent=AT1G11710; Name=AT1G11710.2; Note=Pentatricopeptide repeat (PPR) superfamily protein; computational_description=Pentatricopeptide repeat (PPR) superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G01110.1)%3B Has 45515 Blast hits to 13277 proteins in 292 species: Archae - 2%3B Bacteria - 53%3B Metazoa - 430%3B Fungi - 426%3B Plants - 43316%3B Viruses - 0%3B Other Eukaryotes - 1288 (source: NCBI BLink).; Dbxref=locus:2027382; locus_type=protein_coding
AT1G04873.1	chr1:003951432	0.0	C/3951432-3951671	AT1G04873.1 lnc_RNA AT1G04873 ID=AT1G04873.1; Parent=AT1G04873; Name=AT1G04873.1; locus_type=long_noncoding_rna
AT1G11720.2	chr1:003951597	0.0	W/3951597-3951713,3952345-3952408,3952485-3953618,3953739-3953953,3954080-3954353,3954436-3954611,3954691-3954798,3954886-3954995,3955094-3955199,3955307-3955477,3955597-3955725,3955811-3955993,3956072-3956203,3956297-3956408,3956504-3956627,3956711-3956840	AT1G11720.2 CDS AT1G11720 ID=AT1G11720.2; Parent=AT1G11720; Name=AT1G11720.2; Note=starch synthase 3; curator_summary=Encodes a starch synthase that in addition to its role in starch biosynthesis also has a negative regulatory function in the biosynthesis of transient starch. The protein apparently contains a starch-binding domain (SBD).; conf_class=3; symbol=SS3; Alias=ATSS3, starch synthase 3; full_name=starch synthase 3; computational_description=starch synthase 3 (SS3)%3B FUNCTIONS IN: starch synthase activity%2C transferase activity%2C transferring glycosyl groups%3B INVOLVED IN: starch biosynthetic process%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Glycogen/starch synthases%2C ADP-glucose type (InterPro:IPR011835)%2C Starch synthase%2C catalytic domain (InterPro:IPR013534)%2C Glycosyl transferase%2C group 1 (InterPro:IPR001296)%2C Carbohydrate binding domain%2C family 25 (InterPro:IPR005085)%3B BEST Arabidopsis thaliana protein match is: starch synthase 4 (TAIR:AT4G18240.1)%3B Has 8453 Blast hits to 8330 proteins in 2963 species: Archae - 164%3B Bacteria - 3762%3B Metazoa - 19%3B Fungi - 103%3B Plants - 3720%3B Viruses - 1%3B Other Eukaryotes - 684 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12853141, PMID:14576160, PMID:15347792, PMID:15908598, PMID:16045475, PMID:17028209, PMID:17217470, PMID:17885809, PMID:18650403, PMID:18811962, PMID:19038037, PMID:19154206, PMID:21624979, PMID:22789914, PMID:22899048, PMID:23393426, PMID:23497496, PMID:23872660, PMID:25133777, PMID:25464087, PMID:25663508, locus:2027367; locus_type=protein_coding
AT1G11720.1	chr1:003952460	0.0	W/3952460-3953618,3953739-3953953,3954080-3954353,3954436-3954611,3954691-3954798,3954886-3954995,3955094-3955199,3955307-3955477,3955597-3955725,3955811-3955993,3956072-3956203,3956297-3956408,3956504-3956627,3956711-3956840	AT1G11720.1 CDS AT1G11720 ID=AT1G11720.1; Parent=AT1G11720; Name=AT1G11720.1; Note=starch synthase 3; curator_summary=Encodes a starch synthase that in addition to its role in starch biosynthesis also has a negative regulatory function in the biosynthesis of transient starch. The protein apparently contains a starch-binding domain (SBD).; conf_class=3; symbol=SS3; Alias=ATSS3, starch synthase 3; full_name=starch synthase 3; computational_description=starch synthase 3 (SS3)%3B FUNCTIONS IN: starch synthase activity%2C transferase activity%2C transferring glycosyl groups%3B INVOLVED IN: starch biosynthetic process%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Glycogen/starch synthases%2C ADP-glucose type (InterPro:IPR011835)%2C Starch synthase%2C catalytic domain (InterPro:IPR013534)%2C Glycosyl transferase%2C group 1 (InterPro:IPR001296)%2C Carbohydrate binding domain%2C family 25 (InterPro:IPR005085)%3B BEST Arabidopsis thaliana protein match is: starch synthase 4 (TAIR:AT4G18240.1)%3B Has 8453 Blast hits to 8330 proteins in 2963 species: Archae - 164%3B Bacteria - 3762%3B Metazoa - 19%3B Fungi - 103%3B Plants - 3720%3B Viruses - 1%3B Other Eukaryotes - 684 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12853141, PMID:14576160, PMID:15347792, PMID:15908598, PMID:16045475, PMID:17028209, PMID:17217470, PMID:17885809, PMID:18650403, PMID:18811962, PMID:19038037, PMID:19154206, PMID:21624979, PMID:22789914, PMID:22899048, PMID:23393426, PMID:23497496, PMID:23872660, PMID:25133777, PMID:25464087, PMID:25663508, locus:2027367; locus_type=protein_coding
AT1G11730.1	chr1:003957473	0.0	W/3957473-3957588,3958169-3958253,3958333-3958361,3958458-3958651,3958735-3958798,3958905-3958977,3959063-3959183,3959266-3959353,3959457-3959582,3959682-3959791,3959965-3960113	AT1G11730.1 CDS AT1G11730 ID=AT1G11730.1; Parent=AT1G11730; Name=AT1G11730.1; Note=Galactosyltransferase family protein; conf_class=2; computational_description=Galactosyltransferase family protein%3B FUNCTIONS IN: transferase activity%2C transferring hexosyl groups%2C transferase activity%2C transferring glycosyl groups%3B INVOLVED IN: protein amino acid glycosylation%3B LOCATED IN: membrane%3B EXPRESSED IN: 19 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Glycosyl transferase%2C family 31 (InterPro:IPR002659)%3B BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein (TAIR:AT1G05170.2)%3B Has 1454 Blast hits to 1447 proteins in 96 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 839%3B Fungi - 2%3B Plants - 587%3B Viruses - 0%3B Other Eukaryotes - 26 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:15258262, PMID:16520461, PMID:18548197, PMID:20226671, locus:2027352; locus_type=protein_coding
AT1TE12880	chr1:003960452	0.0	W/3960452-3960517	AT1TE12880 transposable_element AT1TE12880 ID=AT1TE12880; Name=AT1TE12880; Alias=ATENSPM10
AT1G04877.1	chr1:003960944	0.0	W/3960944-3961245	AT1G04877.1 lnc_RNA AT1G04877 ID=AT1G04877.1; Parent=AT1G04877; Name=AT1G04877.1; locus_type=long_noncoding_rna
AT1G11735.1	chr1:003961348	0.0	C/3961348-3961464	AT1G11735.1 miRNA_primary_transcript AT1G11735 ID=AT1G11735.1; Parent=AT1G11735; Alias=p_MI0000989; Name=ath-MIR171b; symbol=MIR171B; curator_summary=Encodes a microRNA that targets several SCL family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UUGAGCCGUGCCAAUAUCACG Expression of this miRNA oscillates during the diurnal cycle. Pri-mRNA coordinates for MIR171b (converted to TAIR10 based on PMID19304749): Chr1: 3961705-3960931 (reverse)%2C length: 775 bp%3B exon coordinates: exon 1: 3961705 to 3961324%2C exon 2: 3961237 to 3960931%3B mature miRNA and miRNA* are located on exon 1.; Note=microRNA ath-MIR171b precursor; full_name=microRNA171B; Dbxref=PMID:19304749, PMID:19236868, PMID:22938544, locus:4010713434, PMID:19304749, PMID:19236868, PMID:22938544, locus:4010713434; locus_type=mirna
ath-miR171b-3p	chr1:003961367	0.0	C/3961367-3961387	ath-miR171b-3p miRNA ath-miR171b-3p ID=ath-miR171b-3p; Alias=MIMAT0000920; Name=ath-miR171b-3p; Derives_from=AT1G11735.1; Note=microRNA ath-miR171b-3p; computational_description=mature miRNA accession:MIMAT0000920
ath-miR171b-5p	chr1:003961430	0.0	C/3961430-3961450	ath-miR171b-5p miRNA ath-miR171b-5p ID=ath-miR171b-5p; Alias=MIMAT0031899; Name=ath-miR171b-5p; Derives_from=AT1G11735.1; Note=microRNA ath-miR171b-5p; computational_description=mature miRNA accession:MIMAT0031899
AT1G11740.1	chr1:003963317	0.0	C/3963317-3963563,3963632-3963722,3964880-3965210,3965559-3966824	AT1G11740.1 CDS AT1G11740 ID=AT1G11740.1; Parent=AT1G11740; Name=AT1G11740.1; Note=ankyrin repeat family protein; conf_class=6; computational_description=ankyrin repeat family protein%3B CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683)%2C Protein of unknown function DUF3424 (InterPro:IPR021832)%2C Ankyrin repeat (InterPro:IPR002110)%3B BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT1G62050.1)%3B Has 1132 Blast hits to 1026 proteins in 130 species: Archae - 4%3B Bacteria - 26%3B Metazoa - 550%3B Fungi - 29%3B Plants - 425%3B Viruses - 2%3B Other Eukaryotes - 96 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:15632092, PMID:16520461, locus:2027342; locus_type=protein_coding
AT1G11750.1	chr1:003967609	0.0	W/3967609-3967703,3967786-3967847,3968007-3968061,3968347-3968548,3968632-3968697,3968784-3968924,3969028-3969081,3969208-3969300,3969488-3969535	AT1G11750.1 CDS AT1G11750 ID=AT1G11750.1; Parent=AT1G11750; Name=AT1G11750.1; Note=CLP protease proteolytic subunit 6; curator_summary=One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).; conf_class=2; symbol=CLPP6; Alias=NCLPP1, NUCLEAR-ENCODED CLPP 1, NCLPP6; full_name=CLP protease proteolytic subunit 6; computational_description=CLP protease proteolytic subunit 6 (CLPP6)%3B FUNCTIONS IN: serine-type endopeptidase activity%3B INVOLVED IN: chloroplast organization%2C photosynthesis%3B LOCATED IN: in 6 components%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase S14%2C ClpP%2C active site (InterPro:IPR018215)%2C Peptidase S14%2C ClpP (InterPro:IPR001907)%3B BEST Arabidopsis thaliana protein match is: nuclear encoded CLP protease 5 (TAIR:AT1G02560.1)%3B Has 13333 Blast hits to 13329 proteins in 3010 species: Archae - 2%3B Bacteria - 8425%3B Metazoa - 145%3B Fungi - 82%3B Plants - 1079%3B Viruses - 86%3B Other Eukaryotes - 3514 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10427773, PMID:10198079, PMID:9951729, PMID:7580259, PMID:8665915, PMID:11299370, PMID:11352464, PMID:11278690, PMID:11982939, PMID:14593120, PMID:16980539, PMID:18650403, PMID:23548781, PMID:23803583, locus:2027327; locus_type=protein_coding
AT1G11750.2	chr1:003967609	0.0	W/3967609-3967703,3967786-3967847,3968007-3968061,3968132-3968185,3968347-3968548,3968632-3968697,3968784-3968924,3969028-3969081,3969208-3969300,3969488-3969535	AT1G11750.2 CDS AT1G11750 ID=AT1G11750.2; Parent=AT1G11750; Name=AT1G11750.2; Note=CLP protease proteolytic subunit 6; curator_summary=One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).; conf_class=6; symbol=CLPP6; Alias=NCLPP1, NUCLEAR-ENCODED CLPP 1, NCLPP6; full_name=CLP protease proteolytic subunit 6; computational_description=CLP protease proteolytic subunit 6 (CLPP6)%3B FUNCTIONS IN: serine-type endopeptidase activity%3B INVOLVED IN: chloroplast organization%2C photosynthesis%3B LOCATED IN: in 6 components%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase S14%2C ClpP%2C active site (InterPro:IPR018215)%2C Peptidase S14%2C ClpP (InterPro:IPR001907)%3B BEST Arabidopsis thaliana protein match is: nuclear encoded CLP protease 5 (TAIR:AT1G02560.1)%3B Has 13333 Blast hits to 13329 proteins in 3010 species: Archae - 2%3B Bacteria - 8425%3B Metazoa - 145%3B Fungi - 82%3B Plants - 1079%3B Viruses - 86%3B Other Eukaryotes - 3514 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:10427773, PMID:10198079, PMID:9951729, PMID:7580259, PMID:8665915, PMID:11299370, PMID:11352464, PMID:11278690, PMID:11982939, PMID:14593120, PMID:16980539, PMID:18650403, PMID:23548781, PMID:23803583, locus:2027327; locus_type=protein_coding
AT1G04883.1	chr1:003967959	0.0	C/3967959-3968238	AT1G04883.1 antisense_lncRNA AT1G04883 ID=AT1G04883.1; Parent=AT1G04883; Name=AT1G04883.1; description=Natural antisense transcript overlaps with AT1G11750; Note=Natural antisense transcript overlaps with AT1G11750; locus_type=antisense_long_noncoding_rna
AT1G11755.1	chr1:003969987	0.0	C/3969987-3969994,3970208-3970290,3970379-3970475,3970556-3970751,3970882-3970943,3971013-3971283,3971441-3971488	AT1G11755.1 CDS AT1G11755 ID=AT1G11755.1; Parent=AT1G11755; Name=AT1G11755.1; Note=Undecaprenyl pyrophosphate synthetase family protein; curator_summary=Encodes a cis-prenyltransferase%2C involved in dolichol biosynthesis. Wilted leaves in mutants due to cell membrane lesions. Mutants have increased drought tolerance%2C but hypersensitve to dark stress.; conf_class=2; symbol=LEW1; full_name=LEAF WILTING 1; computational_description=LEAF WILTING 1 (LEW1)%3B CONTAINS InterPro DOMAIN/s: Di-trans-poly-cis-decaprenylcistransferase-like (InterPro:IPR001441)%3B Has 155 Blast hits to 155 proteins in 74 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 62%3B Fungi - 51%3B Plants - 42%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18612099, PMID:21419101, locus:4010713435; locus_type=protein_coding
AT1G11760.1	chr1:003972356	0.0	C/3972356-3972811	AT1G11760.1 CDS AT1G11760 ID=AT1G11760.1; Parent=AT1G11760; Name=AT1G11760.1; Note=mediator of RNA polymerase II transcription subunit-like protein; curator_summary=Required for expression of CBF-controlled cold-responsive genes. Required for recruitment of the Mediator complex and RNA polymerase II to CBF-controlled cold-responsive genes.; conf_class=2; symbol=MED32; computational_description=MED32%3B Has 41 Blast hits to 40 proteins in 14 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 41%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17560376, PMID:19671879, PMID:22021418, PMID:24415770, locus:2027377; locus_type=protein_coding
AT1G11765.1	chr1:003973908	0.0	W/3973908-3974321	AT1G11765.1 CDS AT1G11765 ID=AT1G11765.1; Parent=AT1G11765; Name=AT1G11765.1; Note=Plant self-incompatibility protein S1 family; conf_class=1; computational_description=Plant self-incompatibility protein S1 family%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264)%3B BEST Arabidopsis thaliana protein match is: Plant self-incompatibility protein S1 family (TAIR:AT3G26880.1)%3B Has 176 Blast hits to 174 proteins in 10 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 7%3B Fungi - 0%3B Plants - 169%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:20032078, locus:1005716751; locus_type=protein_coding
AT1G11770.1	chr1:003975679	0.0	W/3975679-3977289	AT1G11770.1 CDS AT1G11770 ID=AT1G11770.1; Parent=AT1G11770; Name=AT1G11770.1; Note=FAD-binding Berberine family protein; conf_class=1; computational_description=FAD-binding Berberine family protein%3B FUNCTIONS IN: electron carrier activity%2C oxidoreductase activity%2C FAD binding%2C catalytic activity%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 9 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%2C C globular stage%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: FAD-binding%2C type 2 (InterPro:IPR016166)%2C Berberine/berberine-like (InterPro:IPR012951)%2C FAD linked oxidase%2C N-terminal (InterPro:IPR006094)%3B BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT1G01980.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14500793, PMID:18775970, locus:2027362; locus_type=protein_coding
AT1G04887.1	chr1:003975947	0.0	C/3975947-3977255	AT1G04887.1 antisense_lncRNA AT1G04887 ID=AT1G04887.1; Parent=AT1G04887; Name=AT1G04887.1; description=Natural antisense transcript overlaps with AT1G11770; Note=Natural antisense transcript overlaps with AT1G11770; locus_type=antisense_long_noncoding_rna
AT1G11780.1	chr1:003977614	0.0	C/3977614-3977753,3977864-3977985,3978070-3978136,3978223-3978361,3978449-3978762,3978843-3978991,3979071-3979177	AT1G11780.1 CDS AT1G11780 ID=AT1G11780.1; Parent=AT1G11780; Name=AT1G11780.1; Note=oxidoreductase%2C 2OG-Fe(II) oxygenase family protein; conf_class=2; computational_description=oxidoreductase%2C 2OG-Fe(II) oxygenase family protein%3B BEST Arabidopsis thaliana protein match is: 2-oxoglutarate-dependent dioxygenase family protein (TAIR:AT5G01780.2)%3B Has 1304 Blast hits to 1304 proteins in 617 species: Archae - 0%3B Bacteria - 928%3B Metazoa - 100%3B Fungi - 94%3B Plants - 80%3B Viruses - 0%3B Other Eukaryotes - 102 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2027347; locus_type=protein_coding
AT1G11785.1	chr1:003980148	0.0	C/3980148-3980258,3980873-3980902	AT1G11785.1 CDS AT1G11785 ID=AT1G11785.1; Parent=AT1G11785; Name=AT1G11785.1; Note=transmembrane protein; conf_class=1; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B Has 2 Blast hits to 2 proteins in 1 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 2%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:4010713436; locus_type=protein_coding
AT1G11790.1	chr1:003981476	0.0	W/3981476-3981740,3983204-3983271,3983358-3983450,3983541-3983741,3983825-3983905,3983983-3984078,3984258-3984335,3984419-3984508,3984595-3984662,3984742-3984823,3984906-3984962	AT1G11790.1 CDS AT1G11790 ID=AT1G11790.1; Parent=AT1G11790; Name=AT1G11790.1; Note=arogenate dehydratase 1; curator_summary=Encodes a plastid-localized arogenate dehydratase involved in phenylalanine biosynthesis. Not less than six genes encoding ADT were identi%26#64257%3Bed in the Arabidopsis genome: ADT1 [At1g11790]%3B ADT2 [At3g07630]%3B ADT3 [At2g27820]%3B ADT4 [At3g44720]%3B ADT5 [At5g22630]%3B and ADT6 [At1g08250].; conf_class=2; symbol=ADT1; Alias=AtADT1, Arabidopsis thaliana arogenate dehydratase 1; full_name=arogenate dehydratase 1; computational_description=arogenate dehydratase 1 (ADT1)%3B FUNCTIONS IN: arogenate dehydratase activity%2C prephenate dehydratase activity%3B INVOLVED IN: L-phenylalanine biosynthetic process%2C metabolic process%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Prephenate dehydratase (InterPro:IPR001086)%2C Amino acid-binding ACT (InterPro:IPR002912)%2C Prephenate dehydratase%2C conserved site (InterPro:IPR018528)%3B BEST Arabidopsis thaliana protein match is: arogenate dehydratase 2 (TAIR:AT3G07630.2)%3B Has 7165 Blast hits to 7163 proteins in 2224 species: Archae - 179%3B Bacteria - 3955%3B Metazoa - 5%3B Fungi - 120%3B Plants - 260%3B Viruses - 0%3B Other Eukaryotes - 2646 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16552493, PMID:16913859, PMID:17726025, PMID:18375600, PMID:18650403, PMID:19136569, PMID:20736450, PMID:21388819, PMID:22311980, locus:2027332; locus_type=protein_coding
AT1G11790.2	chr1:003981476	0.0	W/3981476-3981740,3983204-3983271,3983358-3983450,3983541-3983741,3983825-3983905,3983983-3984078,3984258-3984335,3984419-3984562	AT1G11790.2 CDS AT1G11790 ID=AT1G11790.2; Parent=AT1G11790; Name=AT1G11790.2; Note=arogenate dehydratase 1; curator_summary=Encodes a plastid-localized arogenate dehydratase involved in phenylalanine biosynthesis. Not less than six genes encoding ADT were identi%26#64257%3Bed in the Arabidopsis genome: ADT1 [At1g11790]%3B ADT2 [At3g07630]%3B ADT3 [At2g27820]%3B ADT4 [At3g44720]%3B ADT5 [At5g22630]%3B and ADT6 [At1g08250].; conf_class=3; symbol=ADT1; Alias=AtADT1, Arabidopsis thaliana arogenate dehydratase 1; full_name=arogenate dehydratase 1; computational_description=arogenate dehydratase 1 (ADT1)%3B FUNCTIONS IN: arogenate dehydratase activity%2C prephenate dehydratase activity%3B INVOLVED IN: L-phenylalanine biosynthetic process%2C metabolic process%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Prephenate dehydratase (InterPro:IPR001086)%2C Amino acid-binding ACT (InterPro:IPR002912)%2C Prephenate dehydratase%2C conserved site (InterPro:IPR018528)%3B BEST Arabidopsis thaliana protein match is: arogenate dehydratase 2 (TAIR:AT3G07630.2)%3B Has 7165 Blast hits to 7163 proteins in 2224 species: Archae - 179%3B Bacteria - 3955%3B Metazoa - 5%3B Fungi - 120%3B Plants - 260%3B Viruses - 0%3B Other Eukaryotes - 2646 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16552493, PMID:16913859, PMID:17726025, PMID:18375600, PMID:18650403, PMID:19136569, PMID:20736450, PMID:21388819, PMID:22311980, locus:2027332; locus_type=protein_coding
AT1G11800.1	chr1:003985520	0.0	C/3985520-3986104,3986199-3986309,3986403-3986551,3986783-3987263	AT1G11800.1 CDS AT1G11800 ID=AT1G11800.1; Parent=AT1G11800; Name=AT1G11800.1; Note=endonuclease/exonuclease/phosphatase family protein; conf_class=2; computational_description=endonuclease/exonuclease/phosphatase family protein%3B FUNCTIONS IN: hydrolase activity%2C zinc ion binding%3B LOCATED IN: intracellular%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135)%2C Zinc finger%2C RanBP2-type (InterPro:IPR001876)%3B Has 386 Blast hits to 366 proteins in 96 species: Archae - 0%3B Bacteria - 14%3B Metazoa - 170%3B Fungi - 14%3B Plants - 104%3B Viruses - 0%3B Other Eukaryotes - 84 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:18650403, PMID:18775970, PMID:20736450, locus:2027417; locus_type=protein_coding
AT1G11803.1	chr1:003987755	0.0	C/3987755-3988030	AT1G11803.1 pseudogenic_transcript AT1G11803 ID=AT1G11803.1; Parent=AT1G11803; Name=AT1G11803.1; index=1; Note=pseudogene; curator_summary=pseudogene of (SAUR) auxin-responsive family protein; computational_description=pseudogene%2C auxin responsive protein%2C blastp match of 74%25 identity and 1.2e-15 P-value to GP|3043536|dbj|BAA25434.1||AB000708 SAUR %7BRaphanus sativus%7D; Dbxref=locus:1005716753, locus:1005716753; locus_type=pseudogene
AT1G11806.1	chr1:003988346	0.0	W/3988346-3989398	AT1G11806.1 pseudogenic_transcript AT1G11806 ID=AT1G11806.1; Parent=AT1G11806; Name=AT1G11806.1; index=1; Note=pseudogene; computational_description=pseudogene%2C hypothetical protein%2C likely a tandem duplication of the immediatly downstream hypothetical protein which has since degenerated.; Dbxref=locus:1005716752, locus:1005716752; locus_type=pseudogene
AT1G11810.1	chr1:003989763	0.0	W/3989763-3990896	AT1G11810.1 CDS AT1G11810 ID=AT1G11810.1; Parent=AT1G11810; Name=AT1G11810.1; Note=F-box associated ubiquitination effector family protein; conf_class=1; computational_description=F-box associated ubiquitination effector family protein%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%2C F-box associated domain%2C type 1 (InterPro:IPR006527)%2C F-box associated interaction domain (InterPro:IPR017451)%3B BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT3G13830.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14576160, locus:2027357; locus_type=protein_coding
AT1G11820.2	chr1:003991144	0.0	C/3991144-3991276,3991388-3991415,3991722-3993026,3993258-3993327	AT1G11820.2 CDS AT1G11820 ID=AT1G11820.2; Parent=AT1G11820; Name=AT1G11820.2; Note=O-Glycosyl hydrolases family 17 protein; conf_class=4; computational_description=O-Glycosyl hydrolases family 17 protein%3B FUNCTIONS IN: cation binding%2C hydrolase activity%2C hydrolyzing O-glycosyl compounds%2C catalytic activity%3B INVOLVED IN: carbohydrate metabolic process%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: Glycoside hydrolase%2C catalytic core (InterPro:IPR017853)%2C Glycoside hydrolase%2C family 17 (InterPro:IPR000490)%2C Glycoside hydrolase%2C subgroup%2C catalytic core (InterPro:IPR013781)%3B BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT2G01630.1)%3B Has 2127 Blast hits to 2113 proteins in 122 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 3%3B Fungi - 0%3B Plants - 2117%3B Viruses - 0%3B Other Eukaryotes - 7 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:14576160, PMID:14973164, PMID:15937229, PMID:16776300, PMID:20687615, locus:2027317; locus_type=protein_coding
AT1G11820.1	chr1:003991259	0.0	C/3991259-3991276,3991388-3991415,3991988-3993026,3993258-3993327	AT1G11820.1 CDS AT1G11820 ID=AT1G11820.1; Parent=AT1G11820; Name=AT1G11820.1; Note=O-Glycosyl hydrolases family 17 protein; conf_class=1; computational_description=O-Glycosyl hydrolases family 17 protein%3B FUNCTIONS IN: cation binding%2C hydrolase activity%2C hydrolyzing O-glycosyl compounds%2C catalytic activity%3B INVOLVED IN: carbohydrate metabolic process%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: Glycoside hydrolase%2C catalytic core (InterPro:IPR017853)%2C Glycoside hydrolase%2C family 17 (InterPro:IPR000490)%2C Glycoside hydrolase%2C subgroup%2C catalytic core (InterPro:IPR013781)%3B BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT2G01630.1)%3B Has 2127 Blast hits to 2113 proteins in 122 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 3%3B Fungi - 0%3B Plants - 2117%3B Viruses - 0%3B Other Eukaryotes - 7 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14576160, PMID:14973164, PMID:15937229, PMID:16776300, PMID:20687615, locus:2027317; locus_type=protein_coding
AT1G04893.1	chr1:003991393	0.0	W/3991393-3991738	AT1G04893.1 antisense_lncRNA AT1G04893 ID=AT1G04893.1; Parent=AT1G04893; Name=AT1G04893.1; description=Natural antisense transcript overlaps with AT1G11820; Note=Natural antisense transcript overlaps with AT1G11820; locus_type=antisense_long_noncoding_rna
AT1G11820.3	chr1:003991663	0.0	C/3991663-3993026,3993258-3993327	AT1G11820.3 CDS AT1G11820 ID=AT1G11820.3; Parent=AT1G11820; Name=AT1G11820.3; Note=O-Glycosyl hydrolases family 17 protein; computational_description=O-Glycosyl hydrolases family 17 protein%3B FUNCTIONS IN: cation binding%2C hydrolase activity%2C hydrolyzing O-glycosyl compounds%2C catalytic activity%3B INVOLVED IN: carbohydrate metabolic process%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: Glycoside hydrolase%2C catalytic core (InterPro:IPR017853)%2C Glycoside hydrolase%2C family 17 (InterPro:IPR000490)%2C Glycoside hydrolase%2C subgroup%2C catalytic core (InterPro:IPR013781)%3B BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT2G01630.1)%3B Has 2127 Blast hits to 2113 proteins in 122 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 3%3B Fungi - 0%3B Plants - 2117%3B Viruses - 0%3B Other Eukaryotes - 7 (source: NCBI BLink).; Dbxref=PMID:14576160, PMID:14973164, PMID:15937229, PMID:16776300, PMID:20687615, locus:2027317; locus_type=protein_coding
AT1G11840.6	chr1:003995928	0.0	W/3995928-3996142,3996238-3996362,3996443-3996507,3996599-3996811,3996890-3996937,3997034-3997141,3997239-3997391,3997477-3997518	AT1G11840.6 CDS AT1G11840 ID=AT1G11840.6; Parent=AT1G11840; Name=AT1G11840.6; Note=glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein; curator_summary=Encodes a glyoxalase I homolog ATGLX1.; conf_class=4; symbol=GLX1; Alias=ATGLX1, glyoxalase I homolog; full_name=glyoxalase I homolog; computational_description=glyoxalase I homolog (GLX1)%3B FUNCTIONS IN: lactoylglutathione lyase activity%2C metal ion binding%3B INVOLVED IN: response to cadmium ion%2C carbohydrate metabolic process%3B LOCATED IN: peroxisome%2C plasma membrane%2C vacuole%2C chloroplast envelope%3B EXPRESSED IN: 27 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Glyoxalase I (InterPro:IPR004361)%2C Glyoxalase I%2C conserved site (InterPro:IPR018146)%2C Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360)%3B BEST Arabidopsis thaliana protein match is: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (TAIR:AT1G67280.1)%3B Has 8678 Blast hits to 5178 proteins in 1682 species: Archae - 141%3B Bacteria - 5669%3B Metazoa - 503%3B Fungi - 263%3B Plants - 249%3B Viruses - 0%3B Other Eukaryotes - 1853 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:12102506, PMID:12172015, PMID:12093376, PMID:12953064, PMID:15047901, PMID:16247729, PMID:16242667, PMID:16502469, PMID:16679420, PMID:17028149, PMID:17153927, PMID:17404219, PMID:17675404, PMID:17828791, PMID:18650403, PMID:18775970, PMID:19329564, PMID:21213008, PMID:22442409, PMID:24317062, locus:2008930; locus_type=protein_coding
AT1G11840.1	chr1:003996045	0.0	W/3996045-3996142,3996238-3996362,3996443-3996507,3996599-3996811,3996890-3996937,3997034-3997141,3997239-3997391,3997477-3997518	AT1G11840.1 CDS AT1G11840 ID=AT1G11840.1; Parent=AT1G11840; Name=AT1G11840.1; Note=glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein; curator_summary=Encodes a glyoxalase I homolog ATGLX1.; conf_class=2; symbol=GLX1; Alias=ATGLX1, glyoxalase I homolog; full_name=glyoxalase I homolog; computational_description=glyoxalase I homolog (GLX1)%3B FUNCTIONS IN: lactoylglutathione lyase activity%2C metal ion binding%3B INVOLVED IN: response to cadmium ion%2C carbohydrate metabolic process%3B LOCATED IN: peroxisome%2C plasma membrane%2C vacuole%2C chloroplast envelope%3B EXPRESSED IN: 27 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Glyoxalase I (InterPro:IPR004361)%2C Glyoxalase I%2C conserved site (InterPro:IPR018146)%2C Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360)%3B BEST Arabidopsis thaliana protein match is: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (TAIR:AT1G67280.1)%3B Has 8678 Blast hits to 5178 proteins in 1682 species: Archae - 141%3B Bacteria - 5669%3B Metazoa - 503%3B Fungi - 263%3B Plants - 249%3B Viruses - 0%3B Other Eukaryotes - 1853 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12102506, PMID:12172015, PMID:12093376, PMID:12953064, PMID:15047901, PMID:16247729, PMID:16242667, PMID:16502469, PMID:16679420, PMID:17028149, PMID:17153927, PMID:17404219, PMID:17675404, PMID:17828791, PMID:18650403, PMID:18775970, PMID:19329564, PMID:21213008, PMID:22442409, PMID:24317062, locus:2008930; locus_type=protein_coding
AT1G11840.2	chr1:003996045	0.0	W/3996045-3996142,3996238-3996362,3996443-3996507,3996599-3996811,3996890-3996937,3997034-3997141,3997239-3997391,3997477-3997518	AT1G11840.2 CDS AT1G11840 ID=AT1G11840.2; Parent=AT1G11840; Name=AT1G11840.2; Note=glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein; curator_summary=Encodes a glyoxalase I homolog ATGLX1.; conf_class=2; symbol=GLX1; Alias=ATGLX1, glyoxalase I homolog; full_name=glyoxalase I homolog; computational_description=glyoxalase I homolog (GLX1)%3B FUNCTIONS IN: lactoylglutathione lyase activity%2C metal ion binding%3B INVOLVED IN: response to cadmium ion%2C carbohydrate metabolic process%3B LOCATED IN: peroxisome%2C plasma membrane%2C vacuole%2C chloroplast envelope%3B EXPRESSED IN: 27 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Glyoxalase I (InterPro:IPR004361)%2C Glyoxalase I%2C conserved site (InterPro:IPR018146)%2C Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360)%3B BEST Arabidopsis thaliana protein match is: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (TAIR:AT1G67280.1)%3B Has 8678 Blast hits to 5178 proteins in 1682 species: Archae - 141%3B Bacteria - 5669%3B Metazoa - 503%3B Fungi - 263%3B Plants - 249%3B Viruses - 0%3B Other Eukaryotes - 1853 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12102506, PMID:12172015, PMID:12093376, PMID:12953064, PMID:15047901, PMID:16247729, PMID:16242667, PMID:16502469, PMID:16679420, PMID:17028149, PMID:17153927, PMID:17404219, PMID:17675404, PMID:17828791, PMID:18650403, PMID:18775970, PMID:19329564, PMID:21213008, PMID:22442409, PMID:24317062, locus:2008930; locus_type=protein_coding
AT1G11840.3	chr1:003996045	0.0	W/3996045-3996142,3996238-3996362,3996443-3996507,3996599-3996811,3996890-3996937,3997034-3997141,3997239-3997391,3997477-3997518	AT1G11840.3 CDS AT1G11840 ID=AT1G11840.3; Parent=AT1G11840; Name=AT1G11840.3; Note=glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein; curator_summary=Encodes a glyoxalase I homolog ATGLX1.; conf_class=2; symbol=GLX1; Alias=ATGLX1, glyoxalase I homolog; full_name=glyoxalase I homolog; computational_description=glyoxalase I homolog (GLX1)%3B FUNCTIONS IN: lactoylglutathione lyase activity%2C metal ion binding%3B INVOLVED IN: response to cadmium ion%2C carbohydrate metabolic process%3B LOCATED IN: peroxisome%2C plasma membrane%2C vacuole%2C chloroplast envelope%3B EXPRESSED IN: 27 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Glyoxalase I (InterPro:IPR004361)%2C Glyoxalase I%2C conserved site (InterPro:IPR018146)%2C Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360)%3B BEST Arabidopsis thaliana protein match is: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (TAIR:AT1G67280.1)%3B Has 8678 Blast hits to 5178 proteins in 1682 species: Archae - 141%3B Bacteria - 5669%3B Metazoa - 503%3B Fungi - 263%3B Plants - 249%3B Viruses - 0%3B Other Eukaryotes - 1853 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12102506, PMID:12172015, PMID:12093376, PMID:12953064, PMID:15047901, PMID:16247729, PMID:16242667, PMID:16502469, PMID:16679420, PMID:17028149, PMID:17153927, PMID:17404219, PMID:17675404, PMID:17828791, PMID:18650403, PMID:18775970, PMID:19329564, PMID:21213008, PMID:22442409, PMID:24317062, locus:2008930; locus_type=protein_coding
AT1G11840.4	chr1:003996045	0.0	W/3996045-3996142,3996238-3996362,3996443-3996507,3996599-3996811,3996890-3996937,3997034-3997141,3997239-3997391,3997477-3997518	AT1G11840.4 CDS AT1G11840 ID=AT1G11840.4; Parent=AT1G11840; Name=AT1G11840.4; Note=glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein; curator_summary=Encodes a glyoxalase I homolog ATGLX1.; conf_class=3; symbol=GLX1; Alias=ATGLX1, glyoxalase I homolog; full_name=glyoxalase I homolog; computational_description=glyoxalase I homolog (GLX1)%3B FUNCTIONS IN: lactoylglutathione lyase activity%2C metal ion binding%3B INVOLVED IN: response to cadmium ion%2C carbohydrate metabolic process%3B LOCATED IN: peroxisome%2C plasma membrane%2C vacuole%2C chloroplast envelope%3B EXPRESSED IN: 27 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Glyoxalase I (InterPro:IPR004361)%2C Glyoxalase I%2C conserved site (InterPro:IPR018146)%2C Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360)%3B BEST Arabidopsis thaliana protein match is: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (TAIR:AT1G67280.1)%3B Has 8678 Blast hits to 5178 proteins in 1682 species: Archae - 141%3B Bacteria - 5669%3B Metazoa - 503%3B Fungi - 263%3B Plants - 249%3B Viruses - 0%3B Other Eukaryotes - 1853 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12102506, PMID:12172015, PMID:12093376, PMID:12953064, PMID:15047901, PMID:16247729, PMID:16242667, PMID:16502469, PMID:16679420, PMID:17028149, PMID:17153927, PMID:17404219, PMID:17675404, PMID:17828791, PMID:18650403, PMID:18775970, PMID:19329564, PMID:21213008, PMID:22442409, PMID:24317062, locus:2008930; locus_type=protein_coding
AT1G11840.5	chr1:003996045	0.0	W/3996045-3996142,3996238-3996362,3996443-3996507,3996599-3996811,3996890-3996937,3997034-3997141,3997249-3997290	AT1G11840.5 CDS AT1G11840 ID=AT1G11840.5; Parent=AT1G11840; Name=AT1G11840.5; Note=glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein; curator_summary=Encodes a glyoxalase I homolog ATGLX1.; conf_class=2; symbol=GLX1; Alias=ATGLX1, glyoxalase I homolog; full_name=glyoxalase I homolog; computational_description=glyoxalase I homolog (GLX1)%3B FUNCTIONS IN: lactoylglutathione lyase activity%2C metal ion binding%3B INVOLVED IN: response to cadmium ion%2C carbohydrate metabolic process%3B LOCATED IN: peroxisome%2C plasma membrane%2C vacuole%2C chloroplast envelope%3B EXPRESSED IN: 27 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Glyoxalase I (InterPro:IPR004361)%2C Glyoxalase I%2C conserved site (InterPro:IPR018146)%2C Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360)%3B BEST Arabidopsis thaliana protein match is: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (TAIR:AT1G67280.1)%3B Has 8678 Blast hits to 5178 proteins in 1682 species: Archae - 141%3B Bacteria - 5669%3B Metazoa - 503%3B Fungi - 263%3B Plants - 249%3B Viruses - 0%3B Other Eukaryotes - 1853 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12102506, PMID:12172015, PMID:12093376, PMID:12953064, PMID:15047901, PMID:16247729, PMID:16242667, PMID:16502469, PMID:16679420, PMID:17028149, PMID:17153927, PMID:17404219, PMID:17675404, PMID:17828791, PMID:18650403, PMID:18775970, PMID:19329564, PMID:21213008, PMID:22442409, PMID:24317062, locus:2008930; locus_type=protein_coding
AT1G11850.1	chr1:003999237	0.0	W/3999237-3999471,3999517-3999563	AT1G11850.1 CDS AT1G11850 ID=AT1G11850.1; Parent=AT1G11850; Name=AT1G11850.1; Note=transmembrane protein; conf_class=1; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 19 plant structures%3B EXPRESSED DURING: 12 growth stages%3B Has 38777 Blast hits to 8185 proteins in 741 species: Archae - 46%3B Bacteria - 14846%3B Metazoa - 13013%3B Fungi - 1392%3B Plants - 5894%3B Viruses - 543%3B Other Eukaryotes - 3043 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:18650403, locus:2008915; locus_type=protein_coding
AT1G11850.2	chr1:003999237	0.0	W/3999237-3999563	AT1G11850.2 CDS AT1G11850 ID=AT1G11850.2; Parent=AT1G11850; Name=AT1G11850.2; Note=transmembrane protein; conf_class=1; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 19 plant structures%3B EXPRESSED DURING: 12 growth stages%3B Has 38777 Blast hits to 8185 proteins in 741 species: Archae - 46%3B Bacteria - 14846%3B Metazoa - 13013%3B Fungi - 1392%3B Plants - 5894%3B Viruses - 543%3B Other Eukaryotes - 3043 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:18650403, locus:2008915; locus_type=protein_coding
AT1G11850.3	chr1:003999237	0.0	W/3999237-3999408,3999535-3999563	AT1G11850.3 CDS AT1G11850 ID=AT1G11850.3; Parent=AT1G11850; Name=AT1G11850.3; Note=transmembrane protein; conf_class=2; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 19 plant structures%3B EXPRESSED DURING: 12 growth stages%3B Has 38777 Blast hits to 8185 proteins in 741 species: Archae - 46%3B Bacteria - 14846%3B Metazoa - 13013%3B Fungi - 1392%3B Plants - 5894%3B Viruses - 543%3B Other Eukaryotes - 3043 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18650403, locus:2008915; locus_type=protein_coding
AT1G11850.4	chr1:003999237	0.0	W/3999237-3999477,3999517-3999563	AT1G11850.4 CDS AT1G11850 ID=AT1G11850.4; Parent=AT1G11850; Name=AT1G11850.4; Note=transmembrane protein; conf_class=2; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 19 plant structures%3B EXPRESSED DURING: 12 growth stages%3B Has 38777 Blast hits to 8185 proteins in 741 species: Archae - 46%3B Bacteria - 14846%3B Metazoa - 13013%3B Fungi - 1392%3B Plants - 5894%3B Viruses - 543%3B Other Eukaryotes - 3043 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18650403, locus:2008915; locus_type=protein_coding
AT1G11860.3	chr1:004001485	0.0	W/4001485-4001526,4001798-4002361,4002457-4002575,4002699-4003245	AT1G11860.3 CDS AT1G11860 ID=AT1G11860.3; Parent=AT1G11860; Name=AT1G11860.3; Note=Glycine cleavage T-protein family; conf_class=4; computational_description=Glycine cleavage T-protein family%3B FUNCTIONS IN: aminomethyltransferase activity%3B INVOLVED IN: response to cadmium ion%3B LOCATED IN: in 6 components%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Glycine cleavage system T protein (InterPro:IPR006223)%2C Glycine cleavage T-protein%2C N-terminal (InterPro:IPR006222)%2C Glycine cleavage T-protein%2C C-terminal barrel (InterPro:IPR013977)%3B BEST Arabidopsis thaliana protein match is: Glycine cleavage T-protein family (TAIR:AT1G60990.3)%3B Has 18524 Blast hits to 18520 proteins in 1978 species: Archae - 139%3B Bacteria - 5685%3B Metazoa - 432%3B Fungi - 162%3B Plants - 109%3B Viruses - 0%3B Other Eukaryotes - 11997 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:15821981, PMID:16502469, PMID:16500996, PMID:16798886, PMID:18650403, PMID:18633119, PMID:20118269, PMID:23281391, locus:2008900; locus_type=protein_coding
AT1G11860.1	chr1:004001801	0.0	W/4001801-4002361,4002457-4002575,4002699-4003245	AT1G11860.1 CDS AT1G11860 ID=AT1G11860.1; Parent=AT1G11860; Name=AT1G11860.1; Note=Glycine cleavage T-protein family; conf_class=2; computational_description=Glycine cleavage T-protein family%3B FUNCTIONS IN: aminomethyltransferase activity%3B INVOLVED IN: response to cadmium ion%3B LOCATED IN: in 6 components%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Glycine cleavage system T protein (InterPro:IPR006223)%2C Glycine cleavage T-protein%2C N-terminal (InterPro:IPR006222)%2C Glycine cleavage T-protein%2C C-terminal barrel (InterPro:IPR013977)%3B BEST Arabidopsis thaliana protein match is: Glycine cleavage T-protein family (TAIR:AT1G60990.3)%3B Has 18524 Blast hits to 18520 proteins in 1978 species: Archae - 139%3B Bacteria - 5685%3B Metazoa - 432%3B Fungi - 162%3B Plants - 109%3B Viruses - 0%3B Other Eukaryotes - 11997 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15821981, PMID:16502469, PMID:16500996, PMID:16798886, PMID:18650403, PMID:18633119, PMID:20118269, PMID:23281391, locus:2008900; locus_type=protein_coding
AT1G11860.2	chr1:004001801	0.0	W/4001801-4002361,4002457-4002575,4002699-4003245	AT1G11860.2 CDS AT1G11860 ID=AT1G11860.2; Parent=AT1G11860; Name=AT1G11860.2; Note=Glycine cleavage T-protein family; conf_class=2; computational_description=Glycine cleavage T-protein family%3B FUNCTIONS IN: aminomethyltransferase activity%3B INVOLVED IN: response to cadmium ion%3B LOCATED IN: in 6 components%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Glycine cleavage system T protein (InterPro:IPR006223)%2C Glycine cleavage T-protein%2C N-terminal (InterPro:IPR006222)%2C Glycine cleavage T-protein%2C C-terminal barrel (InterPro:IPR013977)%3B BEST Arabidopsis thaliana protein match is: Glycine cleavage T-protein family (TAIR:AT1G60990.3)%3B Has 18524 Blast hits to 18520 proteins in 1978 species: Archae - 139%3B Bacteria - 5685%3B Metazoa - 432%3B Fungi - 162%3B Plants - 109%3B Viruses - 0%3B Other Eukaryotes - 11997 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15821981, PMID:16502469, PMID:16500996, PMID:16798886, PMID:18650403, PMID:18633119, PMID:20118269, PMID:23281391, locus:2008900; locus_type=protein_coding
AT1G11870.1	chr1:004003895	0.0	W/4003895-4004099,4004176-4004321,4004563-4004656,4004732-4004880,4004979-4005071,4005348-4005527,4005614-4005780,4005887-4006021,4006097-4006190,4006281-4006556	AT1G11870.1 CDS AT1G11870 ID=AT1G11870.1; Parent=AT1G11870; Name=AT1G11870.1; Note=Seryl-tRNA synthetase; curator_summary=Seryl-tRNA synthetase targeted to chloroplasts and mitochondria. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana.; conf_class=2; symbol=SRS; Alias=ATSRS, OVA7, ovule abortion 7; full_name=Seryl-tRNA synthetase; computational_description=Seryl-tRNA synthetase (SRS)%3B FUNCTIONS IN: serine-tRNA ligase activity%3B INVOLVED IN: chloroplast organization%2C mitochondrion organization%2C seryl-tRNA aminoacylation%2C tRNA aminoacylation%2C ovule development%3B LOCATED IN: mitochondrion%2C chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: tRNA-binding arm (InterPro:IPR010978)%2C Seryl-tRNA synthetase%2C class IIa%2C N-terminal (InterPro:IPR015866)%2C Aminoacyl-tRNA synthetase%2C class II (G/ H/ P/ S)%2C conserved domain (InterPro:IPR002314)%2C Seryl-tRNA synthetase%2C class IIa (InterPro:IPR002317)%2C Ubiquitin supergroup (InterPro:IPR019955)%2C Aminoacyl-tRNA synthetase%2C class II%2C conserved domain (InterPro:IPR006195)%2C Seryl-tRNA synthetase%2C class IIa%2C C-terminal (InterPro:IPR018156)%3B BEST Arabidopsis thaliana protein match is: seryl-tRNA synthetase / serine--tRNA ligase (TAIR:AT5G27470.1)%3B Has 12332 Blast hits to 12318 proteins in 2877 species: Archae - 222%3B Bacteria - 6777%3B Metazoa - 382%3B Fungi - 307%3B Plants - 156%3B Viruses - 0%3B Other Eukaryotes - 4488 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16107332, PMID:16251277, PMID:16297076, PMID:18650403, locus:2008865; locus_type=protein_coding
AT1G11870.2	chr1:004003895	0.0	W/4003895-4004099,4004170-4004321,4004563-4004656,4004732-4004880,4004979-4005071,4005348-4005527,4005614-4005780,4005887-4006021,4006097-4006190,4006281-4006556	AT1G11870.2 CDS AT1G11870 ID=AT1G11870.2; Parent=AT1G11870; Name=AT1G11870.2; Note=Seryl-tRNA synthetase; curator_summary=Seryl-tRNA synthetase targeted to chloroplasts and mitochondria. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana.; conf_class=2; symbol=SRS; Alias=ATSRS, OVA7, ovule abortion 7; full_name=Seryl-tRNA synthetase; computational_description=Seryl-tRNA synthetase (SRS)%3B FUNCTIONS IN: serine-tRNA ligase activity%3B INVOLVED IN: chloroplast organization%2C mitochondrion organization%2C seryl-tRNA aminoacylation%2C tRNA aminoacylation%2C ovule development%3B LOCATED IN: mitochondrion%2C chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: tRNA-binding arm (InterPro:IPR010978)%2C Seryl-tRNA synthetase%2C class IIa%2C N-terminal (InterPro:IPR015866)%2C Aminoacyl-tRNA synthetase%2C class II (G/ H/ P/ S)%2C conserved domain (InterPro:IPR002314)%2C Seryl-tRNA synthetase%2C class IIa (InterPro:IPR002317)%2C Ubiquitin supergroup (InterPro:IPR019955)%2C Aminoacyl-tRNA synthetase%2C class II%2C conserved domain (InterPro:IPR006195)%2C Seryl-tRNA synthetase%2C class IIa%2C C-terminal (InterPro:IPR018156)%3B BEST Arabidopsis thaliana protein match is: seryl-tRNA synthetase / serine--tRNA ligase (TAIR:AT5G27470.1)%3B Has 12332 Blast hits to 12318 proteins in 2877 species: Archae - 222%3B Bacteria - 6777%3B Metazoa - 382%3B Fungi - 307%3B Plants - 156%3B Viruses - 0%3B Other Eukaryotes - 4488 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16107332, PMID:16251277, PMID:16297076, PMID:18650403, locus:2008865; locus_type=protein_coding
AT1G11870.3	chr1:004003895	0.0	W/4003895-4004099,4004170-4004321,4004563-4004656,4004732-4004880,4004979-4005071,4005348-4005527,4005614-4005780,4005887-4006021,4006117-4006150	AT1G11870.3 CDS AT1G11870 ID=AT1G11870.3; Parent=AT1G11870; Name=AT1G11870.3; Note=Seryl-tRNA synthetase; curator_summary=Seryl-tRNA synthetase targeted to chloroplasts and mitochondria. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana.; conf_class=2; symbol=SRS; Alias=ATSRS, OVA7, ovule abortion 7; full_name=Seryl-tRNA synthetase; computational_description=Seryl-tRNA synthetase (SRS)%3B FUNCTIONS IN: serine-tRNA ligase activity%3B INVOLVED IN: chloroplast organization%2C mitochondrion organization%2C seryl-tRNA aminoacylation%2C tRNA aminoacylation%2C ovule development%3B LOCATED IN: mitochondrion%2C chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: tRNA-binding arm (InterPro:IPR010978)%2C Seryl-tRNA synthetase%2C class IIa%2C N-terminal (InterPro:IPR015866)%2C Aminoacyl-tRNA synthetase%2C class II (G/ H/ P/ S)%2C conserved domain (InterPro:IPR002314)%2C Seryl-tRNA synthetase%2C class IIa (InterPro:IPR002317)%2C Ubiquitin supergroup (InterPro:IPR019955)%2C Aminoacyl-tRNA synthetase%2C class II%2C conserved domain (InterPro:IPR006195)%2C Seryl-tRNA synthetase%2C class IIa%2C C-terminal (InterPro:IPR018156)%3B BEST Arabidopsis thaliana protein match is: seryl-tRNA synthetase / serine--tRNA ligase (TAIR:AT5G27470.1)%3B Has 12332 Blast hits to 12318 proteins in 2877 species: Archae - 222%3B Bacteria - 6777%3B Metazoa - 382%3B Fungi - 307%3B Plants - 156%3B Viruses - 0%3B Other Eukaryotes - 4488 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16107332, PMID:16251277, PMID:16297076, PMID:18650403, locus:2008865; locus_type=protein_coding
AT1G11870.4	chr1:004003895	0.0	W/4003895-4004099,4004170-4004321,4004563-4004656,4004732-4004880,4004979-4005071,4005348-4005527,4005614-4005780,4005887-4006021,4006097-4006268	AT1G11870.4 CDS AT1G11870 ID=AT1G11870.4; Parent=AT1G11870; Name=AT1G11870.4; Note=Seryl-tRNA synthetase; symbol=SRS; Alias=ATSRS, OVA7, ovule abortion 7; full_name=Seryl-tRNA synthetase; curator_summary=Seryl-tRNA synthetase targeted to chloroplasts and mitochondria. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana.; computational_description=Seryl-tRNA synthetase (SRS)%3B FUNCTIONS IN: serine-tRNA ligase activity%3B INVOLVED IN: chloroplast organization%2C mitochondrion organization%2C seryl-tRNA aminoacylation%2C tRNA aminoacylation%2C ovule development%3B LOCATED IN: mitochondrion%2C chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: tRNA-binding arm (InterPro:IPR010978)%2C Seryl-tRNA synthetase%2C class IIa%2C N-terminal (InterPro:IPR015866)%2C Aminoacyl-tRNA synthetase%2C class II (G/ H/ P/ S)%2C conserved domain (InterPro:IPR002314)%2C Seryl-tRNA synthetase%2C class IIa (InterPro:IPR002317)%2C Ubiquitin supergroup (InterPro:IPR019955)%2C Aminoacyl-tRNA synthetase%2C class II%2C conserved domain (InterPro:IPR006195)%2C Seryl-tRNA synthetase%2C class IIa%2C C-terminal (InterPro:IPR018156)%3B BEST Arabidopsis thaliana protein match is: seryl-tRNA synthetase / serine--tRNA ligase (TAIR:AT5G27470.1)%3B Has 12332 Blast hits to 12318 proteins in 2877 species: Archae - 222%3B Bacteria - 6777%3B Metazoa - 382%3B Fungi - 307%3B Plants - 156%3B Viruses - 0%3B Other Eukaryotes - 4488 (source: NCBI BLink).; Dbxref=PMID:16107332, PMID:16251277, PMID:16297076, PMID:18650403, locus:2008865; locus_type=protein_coding
AT1G11870.5	chr1:004003895	0.0	W/4003895-4004099,4004170-4004321,4004563-4004656,4004732-4004880,4004979-4005071,4005348-4005527,4005614-4005780,4005887-4006021,4006097-4006190,4006306-4006416	AT1G11870.5 CDS AT1G11870 ID=AT1G11870.5; Parent=AT1G11870; Name=AT1G11870.5; Note=Seryl-tRNA synthetase; symbol=SRS; Alias=ATSRS, OVA7, ovule abortion 7; full_name=Seryl-tRNA synthetase; curator_summary=Seryl-tRNA synthetase targeted to chloroplasts and mitochondria. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana.; computational_description=Seryl-tRNA synthetase (SRS)%3B FUNCTIONS IN: serine-tRNA ligase activity%3B INVOLVED IN: chloroplast organization%2C mitochondrion organization%2C seryl-tRNA aminoacylation%2C tRNA aminoacylation%2C ovule development%3B LOCATED IN: mitochondrion%2C chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: tRNA-binding arm (InterPro:IPR010978)%2C Seryl-tRNA synthetase%2C class IIa%2C N-terminal (InterPro:IPR015866)%2C Aminoacyl-tRNA synthetase%2C class II (G/ H/ P/ S)%2C conserved domain (InterPro:IPR002314)%2C Seryl-tRNA synthetase%2C class IIa (InterPro:IPR002317)%2C Ubiquitin supergroup (InterPro:IPR019955)%2C Aminoacyl-tRNA synthetase%2C class II%2C conserved domain (InterPro:IPR006195)%2C Seryl-tRNA synthetase%2C class IIa%2C C-terminal (InterPro:IPR018156)%3B BEST Arabidopsis thaliana protein match is: seryl-tRNA synthetase / serine--tRNA ligase (TAIR:AT5G27470.1)%3B Has 12332 Blast hits to 12318 proteins in 2877 species: Archae - 222%3B Bacteria - 6777%3B Metazoa - 382%3B Fungi - 307%3B Plants - 156%3B Viruses - 0%3B Other Eukaryotes - 4488 (source: NCBI BLink).; Dbxref=PMID:16107332, PMID:16251277, PMID:16297076, PMID:18650403, locus:2008865; locus_type=protein_coding
AT1G11870.6	chr1:004004608	0.0	W/4004608-4004656,4004732-4004880,4004979-4005071,4005348-4005527,4005614-4005780,4005887-4006021,4006097-4006190,4006281-4006556	AT1G11870.6 CDS AT1G11870 ID=AT1G11870.6; Parent=AT1G11870; Name=AT1G11870.6; Note=Seryl-tRNA synthetase; symbol=SRS; Alias=ATSRS, OVA7, ovule abortion 7; full_name=Seryl-tRNA synthetase; curator_summary=Seryl-tRNA synthetase targeted to chloroplasts and mitochondria. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana.; computational_description=Seryl-tRNA synthetase (SRS)%3B FUNCTIONS IN: serine-tRNA ligase activity%3B INVOLVED IN: chloroplast organization%2C mitochondrion organization%2C seryl-tRNA aminoacylation%2C tRNA aminoacylation%2C ovule development%3B LOCATED IN: mitochondrion%2C chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: tRNA-binding arm (InterPro:IPR010978)%2C Seryl-tRNA synthetase%2C class IIa%2C N-terminal (InterPro:IPR015866)%2C Aminoacyl-tRNA synthetase%2C class II (G/ H/ P/ S)%2C conserved domain (InterPro:IPR002314)%2C Seryl-tRNA synthetase%2C class IIa (InterPro:IPR002317)%2C Ubiquitin supergroup (InterPro:IPR019955)%2C Aminoacyl-tRNA synthetase%2C class II%2C conserved domain (InterPro:IPR006195)%2C Seryl-tRNA synthetase%2C class IIa%2C C-terminal (InterPro:IPR018156)%3B BEST Arabidopsis thaliana protein match is: seryl-tRNA synthetase / serine--tRNA ligase (TAIR:AT5G27470.1)%3B Has 12332 Blast hits to 12318 proteins in 2877 species: Archae - 222%3B Bacteria - 6777%3B Metazoa - 382%3B Fungi - 307%3B Plants - 156%3B Viruses - 0%3B Other Eukaryotes - 4488 (source: NCBI BLink).; Dbxref=PMID:16107332, PMID:16251277, PMID:16297076, PMID:18650403, locus:2008865; locus_type=protein_coding
AT1G04897.1	chr1:004006868	0.0	C/4006868-4007020	AT1G04897.1 snRNA AT1G04897 ID=AT1G04897.1; Parent=AT1G04897; Name=AT1G04897.1; Note=U4; symbol=U4-6; Dbxref=PMID:15575968; Alias=U4.6; locus_type=small_nuclear_rna
AT1G04903.1	chr1:004007229	0.0	W/4007229-4007552	AT1G04903.1 transcript_region AT1G04903 ID=AT1G04903.1; Parent=AT1G04903; computational_description=novel transcribed region%3B detected in root%2C carpel%2C root apical meristem%2C receptacle%2C leaf%2C dark-grown seedling%2C light-grown seedling%2C flower%2C pollen%2C aerial%2C shoot apical meristem; Name=AT1G04903.1; locus_type=novel_transcribed_region
AT1G04907.1	chr1:004007237	0.0	C/4007237-4007396	AT1G04907.1 snRNA AT1G04907 ID=AT1G04907.1; Parent=AT1G04907; Name=AT1G04907.1; Note=U1; symbol=U1-10; Dbxref=PMID:15575968; Alias=U1.10; locus_type=small_nuclear_rna
AT1G11880.1	chr1:004007909	0.0	C/4007909-4008073,4008177-4008337,4008412-4008641,4008725-4008903,4009270-4009465,4009578-4009670,4009799-4009904,4009988-4010327	AT1G11880.1 CDS AT1G11880 ID=AT1G11880.1; Parent=AT1G11880; Name=AT1G11880.1; Note=transferases%2C transferring hexosyl groups; conf_class=2; computational_description=transferases%2C transferring hexosyl groups%3B FUNCTIONS IN: transferase activity%2C transferring hexosyl groups%3B INVOLVED IN: GPI anchor biosynthetic process%3B LOCATED IN: integral to membrane%2C endoplasmic reticulum membrane%3B EXPRESSED IN: 10 plant structures%3B EXPRESSED DURING: F mature embryo stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: Mannosyltransferase%2C PIG-V (InterPro:IPR007315)%3B Has 490 Blast hits to 469 proteins in 237 species: Archae - 6%3B Bacteria - 111%3B Metazoa - 123%3B Fungi - 146%3B Plants - 40%3B Viruses - 0%3B Other Eukaryotes - 64 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18315867, PMID:18650403, PMID:20736450, locus:2008970; locus_type=protein_coding
AT1G11880.3	chr1:004007909	0.0	C/4007909-4008073,4008177-4008337,4008412-4008641,4008725-4008903,4009270-4009465,4009578-4009648,4009988-4010131	AT1G11880.3 CDS AT1G11880 ID=AT1G11880.3; Parent=AT1G11880; Name=AT1G11880.3; Note=transferases%2C transferring hexosyl groups; computational_description=transferases%2C transferring hexosyl groups%3B FUNCTIONS IN: transferase activity%2C transferring hexosyl groups%3B INVOLVED IN: GPI anchor biosynthetic process%3B LOCATED IN: integral to membrane%2C endoplasmic reticulum membrane%3B EXPRESSED IN: 10 plant structures%3B EXPRESSED DURING: F mature embryo stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: Mannosyltransferase%2C PIG-V (InterPro:IPR007315)%3B Has 490 Blast hits to 469 proteins in 237 species: Archae - 6%3B Bacteria - 111%3B Metazoa - 123%3B Fungi - 146%3B Plants - 40%3B Viruses - 0%3B Other Eukaryotes - 64 (source: NCBI BLink).; Dbxref=PMID:18315867, PMID:18650403, PMID:20736450, locus:2008970; locus_type=protein_coding
AT1G11880.2	chr1:004008386	0.0	C/4008386-4008641,4008725-4008903,4009270-4009465,4009578-4009670,4009799-4009904,4009988-4010327	AT1G11880.2 CDS AT1G11880 ID=AT1G11880.2; Parent=AT1G11880; Name=AT1G11880.2; Note=transferases%2C transferring hexosyl groups; computational_description=transferases%2C transferring hexosyl groups%3B FUNCTIONS IN: transferase activity%2C transferring hexosyl groups%3B INVOLVED IN: GPI anchor biosynthetic process%3B LOCATED IN: integral to membrane%2C endoplasmic reticulum membrane%3B EXPRESSED IN: 10 plant structures%3B EXPRESSED DURING: F mature embryo stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: Mannosyltransferase%2C PIG-V (InterPro:IPR007315)%3B Has 490 Blast hits to 469 proteins in 237 species: Archae - 6%3B Bacteria - 111%3B Metazoa - 123%3B Fungi - 146%3B Plants - 40%3B Viruses - 0%3B Other Eukaryotes - 64 (source: NCBI BLink).; Dbxref=PMID:18315867, PMID:18650403, PMID:20736450, locus:2008970; locus_type=protein_coding
AT1G04913.1	chr1:004011060	0.0	C/4011060-4011493	AT1G04913.1 antisense_lncRNA AT1G04913 ID=AT1G04913.1; Parent=AT1G04913; Name=AT1G04913.1; description=Natural antisense transcript overlaps with AT1G11890; Note=Natural antisense transcript overlaps with AT1G11890; locus_type=antisense_long_noncoding_rna
AT1G11890.1	chr1:004011509	0.0	W/4011509-4011696,4011984-4012144,4012236-4012382,4012531-4012607,4012752-4012835	AT1G11890.1 CDS AT1G11890 ID=AT1G11890.1; Parent=AT1G11890; Name=AT1G11890.1; Note=Synaptobrevin family protein; curator_summary=member of SEC22 Gene Family; conf_class=2; symbol=SEC22; Alias=ATSEC22, SECRETION 22; full_name=SECRETION 22; computational_description=SECRETION 22 (SEC22)%3B FUNCTIONS IN: transporter activity%3B INVOLVED IN: transport%2C vesicle-mediated transport%3B LOCATED IN: Golgi apparatus%2C endoplasmic reticulum%2C plasma membrane%2C membrane%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908)%2C Longin-like (InterPro:IPR011012)%2C Synaptobrevin (InterPro:IPR001388)%3B BEST Arabidopsis thaliana protein match is: SNARE-like superfamily protein (TAIR:AT5G52270.1)%3B Has 1577 Blast hits to 1577 proteins in 232 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 548%3B Fungi - 342%3B Plants - 449%3B Viruses - 0%3B Other Eukaryotes - 238 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12383089, PMID:12566592, PMID:15342965, PMID:16244155, PMID:18650403, PMID:18775970, PMID:21205036, PMID:23817436, locus:2008960; locus_type=protein_coding
AT1G11900.1	chr1:004013166	0.0	C/4013166-4014209,4014571-4014630	AT1G11900.1 CDS AT1G11900 ID=AT1G11900.1; Parent=AT1G11900; Name=AT1G11900.1; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; conf_class=1; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G06920.1)%3B Has 30383 Blast hits to 10536 proteins in 259 species: Archae - 3%3B Bacteria - 11%3B Metazoa - 189%3B Fungi - 334%3B Plants - 28802%3B Viruses - 0%3B Other Eukaryotes - 1044 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15565108, PMID:17447913, PMID:18775970, PMID:20736450, locus:2008955; locus_type=protein_coding
AT1G04917.1	chr1:004013195	0.0	W/4013195-4013918	AT1G04917.1 antisense_lncRNA AT1G04917 ID=AT1G04917.1; Parent=AT1G04917; Name=AT1G04917.1; description=Natural antisense transcript overlaps with AT1G11900; Note=Natural antisense transcript overlaps with AT1G11900; locus_type=antisense_long_noncoding_rna
AT1G11905.1	chr1:004014958	0.0	W/4014958-4015240,4015840-4016222	AT1G11905.1 CDS AT1G11905 ID=AT1G11905.1; Parent=AT1G11905; Name=AT1G11905.1; Note=B-cell receptor-associated protein 31-like protein; conf_class=2; computational_description=B-cell receptor-associated protein 31-like %3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: intracellular protein transport%3B LOCATED IN: endomembrane system%2C integral to membrane%2C endoplasmic reticulum%3B CONTAINS InterPro DOMAIN/s: B-cell receptor-associated 31-like (InterPro:IPR008417)%3B BEST Arabidopsis thaliana protein match is: B-cell receptor-associated 31-like (TAIR:AT5G42570.1)%3B Has 277 Blast hits to 277 proteins in 61 species: Archae - 9%3B Bacteria - 14%3B Metazoa - 105%3B Fungi - 11%3B Plants - 130%3B Viruses - 0%3B Other Eukaryotes - 8 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17122072, locus:1005716776; locus_type=protein_coding
AT1G11905.2	chr1:004014958	0.0	W/4014958-4015240,4015636-4015666,4015874-4016222	AT1G11905.2 CDS AT1G11905 ID=AT1G11905.2; Parent=AT1G11905; Name=AT1G11905.2; Note=B-cell receptor-associated protein 31-like protein; conf_class=6; computational_description=B-cell receptor-associated protein 31-like %3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: intracellular protein transport%3B LOCATED IN: endomembrane system%2C integral to membrane%2C endoplasmic reticulum%3B CONTAINS InterPro DOMAIN/s: B-cell receptor-associated 31-like (InterPro:IPR008417)%3B BEST Arabidopsis thaliana protein match is: B-cell receptor-associated 31-like (TAIR:AT5G42570.1)%3B Has 277 Blast hits to 277 proteins in 61 species: Archae - 9%3B Bacteria - 14%3B Metazoa - 105%3B Fungi - 11%3B Plants - 130%3B Viruses - 0%3B Other Eukaryotes - 8 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:17122072, locus:1005716776; locus_type=protein_coding
AT1TE13060	chr1:004015261	0.0	W/4015261-4015525	AT1TE13060 transposable_element AT1TE13060 ID=AT1TE13060; Name=AT1TE13060; Alias=HARBINGER
AT1G11910.1	chr1:004017119	0.0	C/4017119-4017203,4017290-4017378,4017469-4017588,4017686-4017842,4017960-4018024,4018125-4018238,4018330-4018394,4018527-4018566,4018653-4018821,4018905-4019017,4019102-4019196,4019382-4019442,4019527-4019874	AT1G11910.1 CDS AT1G11910 ID=AT1G11910.1; Parent=AT1G11910; Name=AT1G11910.1; Note=aspartic proteinase A1; curator_summary=Encodes an aspartic proteinase that forms a heterodimer and is stable over a broad pH range (ph 3-8).; conf_class=2; symbol=APA1; Alias=ATAPA1; full_name=aspartic proteinase A1; computational_description=aspartic proteinase A1 (APA1)%3B FUNCTIONS IN: endopeptidase activity%3B INVOLVED IN: proteolysis%2C response to salt stress%3B LOCATED IN: vacuole%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 16 growth stages%3B CONTAINS InterPro DOMAIN/s: Saposin-like (InterPro:IPR011001)%2C Peptidase aspartic (InterPro:IPR021109)%2C Peptidase aspartic%2C catalytic (InterPro:IPR009007)%2C Saposin-like type B%2C 1 (InterPro:IPR007856)%2C Saposin-like type B%2C 2 (InterPro:IPR008138)%2C Saposin B (InterPro:IPR008139)%2C Peptidase A1 (InterPro:IPR001461)%2C Peptidase aspartic%2C active site (InterPro:IPR001969)%3B BEST Arabidopsis thaliana protein match is: Saposin-like aspartyl protease family protein (TAIR:AT1G62290.2)%3B Has 7443 Blast hits to 5200 proteins in 420 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 4134%3B Fungi - 1703%3B Plants - 675%3B Viruses - 0%3B Other Eukaryotes - 929 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12230581, PMID:12947053, PMID:14697270, PMID:15215502, PMID:15247369, PMID:15539469, PMID:16297073, PMID:16500996, PMID:16581873, PMID:16679420, PMID:17012602, PMID:17433048, PMID:17885809, PMID:17828791, PMID:18650403, PMID:18775970, PMID:20079503, PMID:24064926, locus:2008940; locus_type=protein_coding
AT1G11910.2	chr1:004017119	0.0	C/4017119-4017203,4017290-4017378,4017469-4017588,4017686-4017842,4017960-4018024,4018125-4018238,4018330-4018394,4018527-4018566,4018653-4018821,4018905-4019017,4019102-4019196,4019382-4019442,4019527-4019879,4019969-4019996	AT1G11910.2 CDS AT1G11910 ID=AT1G11910.2; Parent=AT1G11910; Name=AT1G11910.2; Note=aspartic proteinase A1; symbol=APA1; Alias=ATAPA1; full_name=aspartic proteinase A1; curator_summary=Encodes an aspartic proteinase that forms a heterodimer and is stable over a broad pH range (ph 3-8).; computational_description=aspartic proteinase A1 (APA1)%3B FUNCTIONS IN: endopeptidase activity%3B INVOLVED IN: proteolysis%2C response to salt stress%3B LOCATED IN: vacuole%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 16 growth stages%3B CONTAINS InterPro DOMAIN/s: Saposin-like (InterPro:IPR011001)%2C Peptidase aspartic (InterPro:IPR021109)%2C Peptidase aspartic%2C catalytic (InterPro:IPR009007)%2C Saposin-like type B%2C 1 (InterPro:IPR007856)%2C Saposin-like type B%2C 2 (InterPro:IPR008138)%2C Saposin B (InterPro:IPR008139)%2C Peptidase A1 (InterPro:IPR001461)%2C Peptidase aspartic%2C active site (InterPro:IPR001969)%3B BEST Arabidopsis thaliana protein match is: Saposin-like aspartyl protease family protein (TAIR:AT1G62290.2)%3B Has 7443 Blast hits to 5200 proteins in 420 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 4134%3B Fungi - 1703%3B Plants - 675%3B Viruses - 0%3B Other Eukaryotes - 929 (source: NCBI BLink).; Dbxref=PMID:12230581, PMID:12947053, PMID:14697270, PMID:15215502, PMID:15247369, PMID:15539469, PMID:16297073, PMID:16500996, PMID:16581873, PMID:16679420, PMID:17012602, PMID:17433048, PMID:17885809, PMID:17828791, PMID:18650403, PMID:18775970, PMID:20079503, PMID:24064926, locus:2008940; locus_type=protein_coding
AT1G11915.1	chr1:004021830	0.0	W/4021830-4022646,4022792-4022833,4022954-4023084	AT1G11915.1 CDS AT1G11915 ID=AT1G11915.1; Parent=AT1G11915; Name=AT1G11915.1; Note=wall-associated receptor kinase galacturonan-binding protein; conf_class=1; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: root%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17350.1)%3B Has 261 Blast hits to 261 proteins in 13 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 261%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:505006118; locus_type=protein_coding
AT1G11920.1	chr1:004023667	0.0	C/4023667-4023888,4023995-4024133,4024223-4024326,4024408-4025097	AT1G11920.1 CDS AT1G11920 ID=AT1G11920.1; Parent=AT1G11920; Name=AT1G11920.1; Note=Pectin lyase-like superfamily protein; conf_class=2; computational_description=Pectin lyase-like superfamily protein%3B FUNCTIONS IN: lyase activity%2C pectate lyase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: flower%3B EXPRESSED DURING: petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050)%2C AmbAllergen (InterPro:IPR018082)%2C Pectate lyase/Amb allergen (InterPro:IPR002022)%2C Pectin lyase fold (InterPro:IPR012334)%3B BEST Arabidopsis thaliana protein match is: root hair specific 14 (TAIR:AT4G22080.1)%3B Has 1675 Blast hits to 1668 proteins in 273 species: Archae - 0%3B Bacteria - 759%3B Metazoa - 0%3B Fungi - 209%3B Plants - 697%3B Viruses - 0%3B Other Eukaryotes - 10 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:20649977, locus:2008925; locus_type=protein_coding
AT1G11925.1	chr1:004026195	0.0	C/4026195-4026617	AT1G11925.1 CDS AT1G11925 ID=AT1G11925.1; Parent=AT1G11925; Name=AT1G11925.1; Note=Stigma-specific Stig1 family protein; curator_summary=Encodes a Stigma-specific Stig1 family protein; conf_class=1; computational_description=Stigma-specific Stig1 family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: Stigma-specific protein Stig1 (InterPro:IPR006969)%3B BEST Arabidopsis thaliana protein match is: Stigma-specific Stig1 family protein (TAIR:AT1G50720.1)%3B Has 350 Blast hits to 216 proteins in 35 species: Archae - 0%3B Bacteria - 116%3B Metazoa - 3%3B Fungi - 54%3B Plants - 172%3B Viruses - 0%3B Other Eukaryotes - 5 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:504956323; locus_type=protein_coding
AT1G11930.1	chr1:004028783	0.0	W/4028783-4029043,4029142-4029208,4029324-4029370,4029628-4029715,4029818-4029951,4030041-4030139,4030221-4030298	AT1G11930.1 CDS AT1G11930 ID=AT1G11930.1; Parent=AT1G11930; Name=AT1G11930.1; Note=Putative pyridoxal phosphate-dependent enzyme%2C YBL036C type; conf_class=2; computational_description=Predicted pyridoxal phosphate-dependent enzyme%2C YBL036C type%3B CONTAINS InterPro DOMAIN/s: Predicted pyridoxal phosphate-dependent enzyme%2C YBL036C type (InterPro:IPR011078)%2C Alanine racemase%2C N-terminal (InterPro:IPR001608)%3B BEST Arabidopsis thaliana protein match is: Predicted pyridoxal phosphate-dependent enzyme%2C YBL036C type (TAIR:AT4G26860.1)%3B Has 7110 Blast hits to 7110 proteins in 2384 species: Archae - 21%3B Bacteria - 4266%3B Metazoa - 130%3B Fungi - 135%3B Plants - 56%3B Viruses - 0%3B Other Eukaryotes - 2502 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, PMID:20736450, locus:2008910; locus_type=protein_coding
AT1G11930.2	chr1:004028783	0.0	W/4028783-4029043,4029142-4029208,4029324-4029370,4029628-4029715,4029818-4029951,4030041-4030139,4030227-4030298	AT1G11930.2 CDS AT1G11930 ID=AT1G11930.2; Parent=AT1G11930; Name=AT1G11930.2; Note=Putative pyridoxal phosphate-dependent enzyme%2C YBL036C type; conf_class=2; computational_description=Predicted pyridoxal phosphate-dependent enzyme%2C YBL036C type%3B CONTAINS InterPro DOMAIN/s: Predicted pyridoxal phosphate-dependent enzyme%2C YBL036C type (InterPro:IPR011078)%2C Alanine racemase%2C N-terminal (InterPro:IPR001608)%3B BEST Arabidopsis thaliana protein match is: Predicted pyridoxal phosphate-dependent enzyme%2C YBL036C type (TAIR:AT4G26860.1)%3B Has 7110 Blast hits to 7110 proteins in 2384 species: Archae - 21%3B Bacteria - 4266%3B Metazoa - 130%3B Fungi - 135%3B Plants - 56%3B Viruses - 0%3B Other Eukaryotes - 2502 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, PMID:20736450, locus:2008910; locus_type=protein_coding
AT1G11940.1	chr1:004031768	0.0	C/4031768-4031932,4032020-4032166,4032258-4032314,4032506-4032547,4032648-4032728,4032876-4032957,4033088-4033159,4033284-4033384,4033460-4033576,4033659-4033946	AT1G11940.1 CDS AT1G11940 ID=AT1G11940.1; Parent=AT1G11940; Name=AT1G11940.1; Note=Core-2/I-branching beta-1%2C6-N-acetylglucosaminyltransferase family protein; conf_class=2; computational_description=Core-2/I-branching beta-1%2C6-N-acetylglucosaminyltransferase family protein%3B CONTAINS InterPro DOMAIN/s: Core-2/I-Branching enzyme (InterPro:IPR021141)%3B BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1%2C6-N-acetylglucosaminyltransferase family protein (TAIR:AT1G62305.1)%3B Has 575 Blast hits to 575 proteins in 19 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 0%3B Fungi - 0%3B Plants - 548%3B Viruses - 0%3B Other Eukaryotes - 25 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, locus:2008890; locus_type=protein_coding
AT1G11940.2	chr1:004032470	0.0	C/4032470-4032547,4032648-4032728,4032876-4032957,4033088-4033159,4033284-4033384,4033460-4033576,4033659-4033946	AT1G11940.2 CDS AT1G11940 ID=AT1G11940.2; Parent=AT1G11940; Name=AT1G11940.2; Note=Core-2/I-branching beta-1%2C6-N-acetylglucosaminyltransferase family protein; computational_description=Core-2/I-branching beta-1%2C6-N-acetylglucosaminyltransferase family protein%3B CONTAINS InterPro DOMAIN/s: Core-2/I-Branching enzyme (InterPro:IPR021141)%3B BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1%2C6-N-acetylglucosaminyltransferase family protein (TAIR:AT1G62305.1)%3B Has 575 Blast hits to 575 proteins in 19 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 0%3B Fungi - 0%3B Plants - 548%3B Viruses - 0%3B Other Eukaryotes - 25 (source: NCBI BLink).; Dbxref=PMID:18775970, locus:2008890; locus_type=protein_coding
AT1G11950.1	chr1:004034747	0.0	C/4034747-4034821,4034926-4035045,4035126-4035211,4035294-4035366,4035442-4035723,4035804-4036133,4036212-4036908,4036994-4037057,4037134-4037266,4037377-4037476,4037557-4037672,4037759-4038310	AT1G11950.1 CDS AT1G11950 ID=AT1G11950.1; Parent=AT1G11950; Name=AT1G11950.1; Note=Transcription factor jumonji (jmjC) domain-containing protein; conf_class=2; computational_description=Transcription factor jumonji (jmjC) domain-containing protein%3B CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347)%2C Transcription factor jumonji (InterPro:IPR013129)%3B BEST Arabidopsis thaliana protein match is: transcription factor jumonji (jmjC) domain-containing protein (TAIR:AT1G62310.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16720694, PMID:20736450, locus:2008875; locus_type=protein_coding
AT1G11950.3	chr1:004034747	0.0	C/4034747-4034821,4034926-4035045,4035126-4035211,4035294-4035366,4035442-4035723,4035804-4036133,4036212-4036908,4036994-4037057,4037134-4037266,4037377-4037476,4037557-4037672,4037759-4038310	AT1G11950.3 CDS AT1G11950 ID=AT1G11950.3; Parent=AT1G11950; Name=AT1G11950.3; Note=Transcription factor jumonji (jmjC) domain-containing protein; Dbxref=PMID:16720694, PMID:20736450, locus:2008875; computational_description=Transcription factor jumonji (jmjC) domain-containing protein%3B CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347)%2C Transcription factor jumonji (InterPro:IPR013129)%3B BEST Arabidopsis thaliana protein match is: transcription factor jumonji (jmjC) domain-containing protein (TAIR:AT1G62310.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; locus_type=protein_coding
AT1G11950.2	chr1:004035023	0.0	C/4035023-4035045,4035155-4035211,4035294-4035366,4035442-4035723,4035804-4036133,4036212-4036908,4036994-4037057,4037134-4037266,4037377-4037476,4037557-4037672,4037759-4038310	AT1G11950.2 CDS AT1G11950 ID=AT1G11950.2; Parent=AT1G11950; Name=AT1G11950.2; Note=Transcription factor jumonji (jmjC) domain-containing protein; computational_description=Transcription factor jumonji (jmjC) domain-containing protein%3B CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347)%2C Transcription factor jumonji (InterPro:IPR013129)%3B BEST Arabidopsis thaliana protein match is: transcription factor jumonji (jmjC) domain-containing protein (TAIR:AT1G62310.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=PMID:16720694, PMID:20736450, locus:2008875; locus_type=protein_coding
AT1G11960.1	chr1:004039871	0.0	C/4039871-4040131,4040266-4040499,4040671-4040995,4041082-4041327,4041407-4041747,4041827-4041907,4041991-4042110,4042193-4042294,4042367-4042502,4042581-4042736,4042830-4043143	AT1G11960.1 CDS AT1G11960 ID=AT1G11960.1; Parent=AT1G11960; Name=AT1G11960.1; Note=ERD (early-responsive to dehydration stress) family protein; conf_class=2; computational_description=ERD (early-responsive to dehydration stress) family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864)%3B BEST Arabidopsis thaliana protein match is: ERD (early-responsive to dehydration stress) family protein (TAIR:AT1G62320.1)%3B Has 1452 Blast hits to 1271 proteins in 185 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 184%3B Fungi - 702%3B Plants - 435%3B Viruses - 0%3B Other Eukaryotes - 127 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12172015, PMID:17586839, PMID:18156220, locus:2008860; locus_type=protein_coding
AT1G11960.3	chr1:004039871	0.0	C/4039871-4040131,4040266-4040499,4040671-4040995,4041082-4041327,4041407-4041747,4041827-4041907,4041991-4042110,4042193-4042294,4042367-4042502,4042581-4042736,4042830-4043143	AT1G11960.3 CDS AT1G11960 ID=AT1G11960.3; Parent=AT1G11960; Name=AT1G11960.3; Note=ERD (early-responsive to dehydration stress) family protein; Dbxref=PMID:12172015, PMID:17586839, PMID:18156220, locus:2008860; computational_description=ERD (early-responsive to dehydration stress) family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864)%3B BEST Arabidopsis thaliana protein match is: ERD (early-responsive to dehydration stress) family protein (TAIR:AT1G62320.1)%3B Has 1452 Blast hits to 1271 proteins in 185 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 184%3B Fungi - 702%3B Plants - 435%3B Viruses - 0%3B Other Eukaryotes - 127 (source: NCBI BLink).; locus_type=protein_coding
AT1G11960.2	chr1:004040590	0.0	C/4040590-4040995,4041082-4041327,4041407-4041747,4041827-4041907,4041991-4042110,4042193-4042294,4042367-4042502,4042581-4042736,4042830-4043143	AT1G11960.2 CDS AT1G11960 ID=AT1G11960.2; Parent=AT1G11960; Name=AT1G11960.2; Note=ERD (early-responsive to dehydration stress) family protein; computational_description=ERD (early-responsive to dehydration stress) family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864)%3B BEST Arabidopsis thaliana protein match is: ERD (early-responsive to dehydration stress) family protein (TAIR:AT1G62320.1)%3B Has 1452 Blast hits to 1271 proteins in 185 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 184%3B Fungi - 702%3B Plants - 435%3B Viruses - 0%3B Other Eukaryotes - 127 (source: NCBI BLink).; Dbxref=PMID:12172015, PMID:17586839, PMID:18156220, locus:2008860; locus_type=protein_coding
AT1G11970.1	chr1:004044370	0.0	W/4044370-4044669	AT1G11970.1 CDS AT1G11970 ID=AT1G11970.1; Parent=AT1G11970; Name=AT1G11970.1; Note=Ubiquitin-like superfamily protein; conf_class=10; computational_description=Ubiquitin-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626)%3B BEST Arabidopsis thaliana protein match is: ubiquitin-related protein 3 (TAIR:AT1G11980.1)%3B Has 285 Blast hits to 285 proteins in 87 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 150%3B Fungi - 22%3B Plants - 105%3B Viruses - 1%3B Other Eukaryotes - 7 (source: NCBI BLink).; Dbxref=locus:2008850; locus_type=protein_coding
AT1G11980.1	chr1:004045619	0.0	W/4045619-4045855	AT1G11980.1 CDS AT1G11980 ID=AT1G11980.1; Parent=AT1G11980; Name=AT1G11980.1; Note=ubiquitin-related protein 3; conf_class=1; symbol=RUB3; full_name=ubiquitin-related protein 3; computational_description=ubiquitin-related protein 3 (RUB3)%3B CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956)%2C Ubiquitin conserved site (InterPro:IPR019954)%2C Ubiquitin (InterPro:IPR000626)%2C Ubiquitin supergroup (InterPro:IPR019955)%3B BEST Arabidopsis thaliana protein match is: related to ubiquitin 1 (TAIR:AT1G31340.1)%3B Has 10783 Blast hits to 5743 proteins in 691 species: Archae - 0%3B Bacteria - 14%3B Metazoa - 4770%3B Fungi - 1304%3B Plants - 2605%3B Viruses - 173%3B Other Eukaryotes - 1917 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:9857029, PMID:17513484, PMID:20032078, locus:2008950; locus_type=protein_coding
AT1G11990.1	chr1:004046246	0.0	C/4046246-4046551,4046637-4046877,4046965-4047110,4047222-4047323,4047401-4047544,4047635-4047755,4047862-4047950,4048036-4048097,4048175-4048313,4048386-4048478,4048731-4049060	AT1G11990.1 CDS AT1G11990 ID=AT1G11990.1; Parent=AT1G11990; Name=AT1G11990.1; Note=O-fucosyltransferase family protein; conf_class=6; computational_description=O-fucosyltransferase family protein%3B CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378)%3B BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT1G62330.1)%3B Has 811 Blast hits to 808 proteins in 28 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 811%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:18775970, locus:2008935; locus_type=protein_coding
AT1G11990.2	chr1:004046246	0.0	C/4046246-4046551,4046637-4046877,4046965-4047323,4047401-4047544,4047635-4047755,4047862-4047950,4048036-4048097,4048175-4048268,4048386-4048478,4048731-4049060	AT1G11990.2 CDS AT1G11990 ID=AT1G11990.2; Parent=AT1G11990; Name=AT1G11990.2; Note=O-fucosyltransferase family protein; computational_description=O-fucosyltransferase family protein%3B CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378)%3B BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT1G62330.1)%3B Has 811 Blast hits to 808 proteins in 28 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 811%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=PMID:18775970, locus:2008935; locus_type=protein_coding
AT1G12000.1	chr1:004050159	0.0	C/4050159-4050232,4050322-4050390,4050474-4050518,4050604-4050688,4050797-4050908,4051023-4051138,4051245-4051415,4051516-4051647,4051874-4051962,4052052-4052115,4052286-4052391,4052530-4052636,4052733-4052786,4052916-4053037,4053138-4053296,4053532-4053727	AT1G12000.1 CDS AT1G12000 ID=AT1G12000.1; Parent=AT1G12000; Name=AT1G12000.1; Note=Phosphofructokinase family protein; conf_class=2; computational_description=Phosphofructokinase family protein%3B FUNCTIONS IN: diphosphate-fructose-6-phosphate 1-phosphotransferase activity%3B INVOLVED IN: response to cadmium ion%2C glycolysis%2C photosynthesis%3B LOCATED IN: pyrophosphate-dependent phosphofructokinase complex%2C beta-subunit complex%2C cell wall%2C membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Pyrophosphate-dependent phosphofructokinase PfpB (InterPro:IPR011183)%2C Phosphofructokinase (InterPro:IPR000023)%3B BEST Arabidopsis thaliana protein match is: Phosphofructokinase family protein (TAIR:AT4G04040.1)%3B Has 6357 Blast hits to 6276 proteins in 1942 species: Archae - 28%3B Bacteria - 4805%3B Metazoa - 61%3B Fungi - 134%3B Plants - 409%3B Viruses - 4%3B Other Eukaryotes - 916 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:16502469, PMID:16916443, PMID:19533038, PMID:20118269, PMID:20736450, PMID:24064926, locus:2008920; locus_type=protein_coding
AT1G12010.1	chr1:004056274	0.0	W/4056274-4056387,4056562-4056788,4056877-4057210,4057383-4057670	AT1G12010.1 CDS AT1G12010 ID=AT1G12010.1; Parent=AT1G12010; Name=AT1G12010.1; Note=2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; curator_summary=Encodes a protein that appears to have 1-amino-cyclopropane-1-carboxylic acid oxidase activity based on mutant analyses.; conf_class=2; computational_description=2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein%3B CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123)%3B BEST Arabidopsis thaliana protein match is: ACC oxidase 2 (TAIR:AT1G62380.1)%3B Has 8592 Blast hits to 8546 proteins in 1001 species: Archae - 0%3B Bacteria - 1125%3B Metazoa - 104%3B Fungi - 1034%3B Plants - 4961%3B Viruses - 0%3B Other Eukaryotes - 1368 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12481097, PMID:15258262, PMID:15824099, PMID:16172500, PMID:16258015, PMID:16489130, PMID:16705404, PMID:16673935, PMID:16972165, PMID:19513806, PMID:20736450, locus:2008905; locus_type=protein_coding
AT1G12013.1	chr1:004058287	0.0	W/4058287-4058416	AT1G12013.1 snoRNA AT1G12013 ID=AT1G12013.1; Parent=AT1G12013; curator_summary=Encodes a H/ACA-box snoRNA (snoR111). Gb: AJ505682; symbol=SNOR111; full_name=small nucleolar RNA111; Dbxref=PMID:18613972 22820990, PMID:18613972, locus:1009023098; Name=AT1G12013.1; Note=SNOR111%2CsnoRNA; locus_type=small_nucleolar_rna
AT1G12015.1	chr1:004058487	0.0	W/4058487-4058576	AT1G12015.1 snoRNA AT1G12015 ID=AT1G12015.1; Parent=AT1G12015; computational_description=snoRNA; Dbxref=PMID:22820990, locus:3686306; Name=AT1G12015.1; Note=snoRNA; locus_type=small_nucleolar_rna
AT1G12020.1	chr1:004062625	0.0	C/4062625-4063305	AT1G12020.1 CDS AT1G12020 ID=AT1G12020.1; Parent=AT1G12020; Name=AT1G12020.1; Note=hypothetical protein; conf_class=1; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62422.1)%3B Has 89 Blast hits to 88 proteins in 16 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 87%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:17227549, locus:2008885; locus_type=protein_coding
AT1G12030.1	chr1:004064751	0.0	C/4064751-4065262,4065944-4066319	AT1G12030.1 CDS AT1G12030 ID=AT1G12030.1; Parent=AT1G12030; Name=AT1G12030.1; Note=phosphoenolpyruvate carboxylase%2C putative (DUF506); conf_class=1; computational_description=Protein of unknown function (DUF506) %3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF506%2C plant (InterPro:IPR006502)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF506) (TAIR:AT1G62420.1)%3B Has 393 Blast hits to 391 proteins in 26 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 0%3B Fungi - 0%3B Plants - 387%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15086809, PMID:16510518, PMID:18775970, PMID:20736450, locus:2008870; locus_type=protein_coding
AT1G04923.1	chr1:004068821	0.0	C/4068821-4069413	AT1G04923.1 lnc_RNA AT1G04923 ID=AT1G04923.1; Parent=AT1G04923; Name=AT1G04923.1; locus_type=long_noncoding_rna
AT1G12040.1	chr1:004070160	0.0	W/4070160-4072394	AT1G12040.1 CDS AT1G12040 ID=AT1G12040.1; Parent=AT1G12040; Name=AT1G12040.1; Note=leucine-rich repeat/extensin 1; curator_summary=encodes a a chimeric leucine-rich repeat/extensin protein that regulates root hair morphogenesis and elongation. Null mutants develop root hairs that frequently abort%2C swell%2C or branch. Gene is expressed in root hair cells and protein is specifically localized in the wall of the hair proper.; conf_class=1; symbol=LRX1; full_name=leucine-rich repeat/extensin 1; computational_description=leucine-rich repeat/extensin 1 (LRX1)%3B CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain%2C type 2 (InterPro:IPR013210)%2C Leucine-rich repeat (InterPro:IPR001611)%3B BEST Arabidopsis thaliana protein match is: leucine-rich repeat/extensin 2 (TAIR:AT1G62440.1)%3B Has 373279 Blast hits to 102116 proteins in 2982 species: Archae - 793%3B Bacteria - 62996%3B Metazoa - 122212%3B Fungi - 47201%3B Plants - 91548%3B Viruses - 7950%3B Other Eukaryotes - 40579 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11331608, PMID:12079677, PMID:12644681, PMID:12834403, PMID:16766693, PMID:18567791, PMID:20545889, PMID:20530756, PMID:21680836, PMID:22253603, locus:2008895; locus_type=protein_coding
AT1TE13240	chr1:004071378	0.0	W/4071378-4071831	AT1TE13240 transposable_element AT1TE13240 ID=AT1TE13240; Name=AT1TE13240; Alias=ATHILA6A
AT1TE13245	chr1:004071870	0.0	W/4071870-4072056	AT1TE13245 transposable_element AT1TE13245 ID=AT1TE13245; Name=AT1TE13245; Alias=VANDAL1
AT1G12050.1	chr1:004072904	0.0	W/4072904-4073110,4073486-4073564,4073658-4073716,4073809-4073933,4074030-4074104,4074348-4074423,4074542-4074641,4074725-4074784,4074879-4074949,4075028-4075090,4075195-4075259,4075343-4075439,4075534-4075659,4075794-4075856	AT1G12050.1 CDS AT1G12050 ID=AT1G12050.1; Parent=AT1G12050; Name=AT1G12050.1; Note=fumarylacetoacetase; curator_summary=Encodes a fumarylacetoacetase that converts fumarylacetoacetate to acetoacetate and fumarate and is likely to be involved in tyrosine catabolism.; conf_class=2; Alias=AtFAH, FAH, fumarylacetoacetate hydrolase, SSCD1, short-day sensitive cell deathshort-day sensitive cell deathshort-day sensitive cell death 111; computational_description=fumarylacetoacetase%2C putative%3B FUNCTIONS IN: fumarylacetoacetase activity%2C catalytic activity%3B INVOLVED IN: aromatic amino acid family metabolic process%2C metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Fumarylacetoacetase%2C C-terminal-like (InterPro:IPR002529)%2C Fumarylacetoacetase%2C C-terminal-related (InterPro:IPR011234)%2C Fumarylacetoacetase%2C N-terminal (InterPro:IPR015377)%2C Fumarylacetoacetase (InterPro:IPR005959)%3B Has 4441 Blast hits to 4434 proteins in 1063 species: Archae - 139%3B Bacteria - 2814%3B Metazoa - 297%3B Fungi - 179%3B Plants - 60%3B Viruses - 0%3B Other Eukaryotes - 952 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16626458, PMID:16679420, PMID:22980205, PMID:23743712, locus:2008845; locus_type=protein_coding
AT1G12060.1	chr1:004076334	0.0	W/4076334-4076981	AT1G12060.1 CDS AT1G12060 ID=AT1G12060.1; Parent=AT1G12060; Name=AT1G12060.1; Note=BCL-2-associated athanogene 5; curator_summary=A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins%2C plant homologs of mammalian regulators of apoptosis. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts%2C as they regulate apoptotic-like processes ranging from pathogen attack%2C to abiotic stress%2C to plant development.; conf_class=1; symbol=BAG5; Alias=ATBAG5, BCL-2-associated athanogene 5; full_name=BCL-2-associated athanogene 5; computational_description=BCL-2-associated athanogene 5 (BAG5)%3B INVOLVED IN: regulation of apoptosis%2C apoptosis%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Apoptosis regulator%2C Bcl-2 protein%2C BAG (InterPro:IPR003103)%2C IQ calmodulin-binding region (InterPro:IPR000048)%3B BEST Arabidopsis thaliana protein match is: BCL-2-associated athanogene 6 (TAIR:AT2G46240.1)%3B Has 84 Blast hits to 84 proteins in 15 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2%3B Fungi - 0%3B Plants - 82%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16003391, PMID:16636050, locus:2008840; locus_type=protein_coding
AT1G12064.1	chr1:004077705	0.0	C/4077705-4078034	AT1G12064.1 CDS AT1G12064 ID=AT1G12064.1; Parent=AT1G12064; Name=AT1G12064.1; Note=transmembrane protein; conf_class=1; computational_description=unknown protein%3B LOCATED IN: endomembrane system%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:1009023142; locus_type=protein_coding
AT1G12070.1	chr1:004078913	0.0	C/4078913-4078984,4079147-4079271,4079364-4079588,4079766-4079832,4079924-4080106	AT1G12070.1 CDS AT1G12070 ID=AT1G12070.1; Parent=AT1G12070; Name=AT1G12070.1; Note=Immunoglobulin E-set superfamily protein; conf_class=1; computational_description=Immunoglobulin E-set superfamily protein%3B FUNCTIONS IN: Rho GDP-dissociation inhibitor activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cytoplasm%3B EXPRESSED IN: 10 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%2C C globular stage%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Immunoglobulin E-set (InterPro:IPR014756)%2C RHO protein GDP dissociation inhibitor (InterPro:IPR000406)%3B BEST Arabidopsis thaliana protein match is: Immunoglobulin E-set superfamily protein (TAIR:AT1G62450.1)%3B Has 658 Blast hits to 658 proteins in 181 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 322%3B Fungi - 164%3B Plants - 123%3B Viruses - 0%3B Other Eukaryotes - 49 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14500793, PMID:18775970, locus:2008965; locus_type=protein_coding
AT1TE13270	chr1:004082294	0.0	C/4082294-4083025	AT1TE13270 transposable_element AT1TE13270 ID=AT1TE13270; Name=AT1TE13270; Alias=HELITRONY1D
AT1G12080.1	chr1:004084289	0.0	W/4084289-4084303,4084487-4084567,4084670-4084888	AT1G12080.1 CDS AT1G12080 ID=AT1G12080.1; Parent=AT1G12080; Name=AT1G12080.1; Note=Vacuolar calcium-binding protein-like protein; conf_class=2; computational_description=Vacuolar calcium-binding protein-related%3B Has 7161 Blast hits to 3135 proteins in 433 species: Archae - 55%3B Bacteria - 867%3B Metazoa - 2008%3B Fungi - 476%3B Plants - 327%3B Viruses - 233%3B Other Eukaryotes - 3195 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11115874, PMID:12481097, PMID:15047898, PMID:16621846, PMID:17408486, PMID:17616511, PMID:17905860, PMID:18783601, PMID:19291320, locus:2202018; locus_type=protein_coding
AT1G12080.2	chr1:004084289	0.0	W/4084289-4084303,4084487-4084888	AT1G12080.2 CDS AT1G12080 ID=AT1G12080.2; Parent=AT1G12080; Name=AT1G12080.2; Note=Vacuolar calcium-binding protein-like protein; conf_class=2; computational_description=Vacuolar calcium-binding protein-related%3B Has 7161 Blast hits to 3135 proteins in 433 species: Archae - 55%3B Bacteria - 867%3B Metazoa - 2008%3B Fungi - 476%3B Plants - 327%3B Viruses - 233%3B Other Eukaryotes - 3195 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11115874, PMID:12481097, PMID:15047898, PMID:16621846, PMID:17408486, PMID:17616511, PMID:17905860, PMID:18783601, PMID:19291320, locus:2202018; locus_type=protein_coding
AT1G12090.1	chr1:004090176	0.0	C/4090176-4090589	AT1G12090.1 CDS AT1G12090 ID=AT1G12090.1; Parent=AT1G12090; Name=AT1G12090.1; Note=extensin-like protein; curator_summary=extensin-like protein (ELP); conf_class=1; symbol=ELP; full_name=extensin-like protein; computational_description=extensin-like protein (ELP)%3B FUNCTIONS IN: lipid binding%3B INVOLVED IN: lipid transport%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140)%2C Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612)%2C Plant lipid transfer protein/hydrophobic protein%2C helical domain (InterPro:IPR013770)%3B BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT1G62510.1)%3B Has 793 Blast hits to 787 proteins in 64 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 0%3B Fungi - 0%3B Plants - 787%3B Viruses - 0%3B Other Eukaryotes - 4 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12509532, PMID:14576160, PMID:14682612, PMID:15319483, PMID:15990873, PMID:16258015, PMID:16553894, PMID:18650403, PMID:20484005, locus:2008880; locus_type=protein_coding
AT1TE13300	chr1:004090942	0.0	W/4090942-4091432	AT1TE13300 transposable_element AT1TE13300 ID=AT1TE13300; Name=AT1TE13300; Alias=HELITRONY2
AT1TE13305	chr1:004093261	0.0	W/4093261-4093293	AT1TE13305 transposable_element AT1TE13305 ID=AT1TE13305; Name=AT1TE13305; Alias=DT1
AT1TE13310	chr1:004093294	0.0	C/4093294-4094494	AT1TE13310 transposable_element AT1TE13310 ID=AT1TE13310; Name=AT1TE13310; Alias=HELITRONY3
AT1G12100.1	chr1:004095246	0.0	W/4095246-4095273,4095475-4095845	AT1G12100.1 CDS AT1G12100 ID=AT1G12100.1; Parent=AT1G12100; Name=AT1G12100.1; Note=Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; conf_class=8; computational_description=Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein%3B FUNCTIONS IN: lipid binding%3B INVOLVED IN: lipid transport%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: shoot apex%2C embryo%2C flower%2C leaf%2C seed%3B EXPRESSED DURING: petal differentiation and expansion stage%2C E expanded cotyledon stage%3B CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140)%2C Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612)%2C Plant lipid transfer protein/hydrophobic protein%2C helical domain (InterPro:IPR013770)%3B BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT4G12510.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=*; Dbxref=PMID:14576160, PMID:15319483, PMID:15749712, PMID:16297073, locus:2201976; locus_type=protein_coding
AT1TE13320	chr1:004097906	0.0	W/4097906-4098872	AT1TE13320 transposable_element AT1TE13320 ID=AT1TE13320; Name=AT1TE13320; Alias=ATREP3
AT1G12110.1	chr1:004105341	0.0	W/4105341-4105455,4105641-4105818,4105913-4105952,4106127-4106701,4108426-4109290	AT1G12110.1 CDS AT1G12110 ID=AT1G12110.1; Parent=AT1G12110; Name=AT1G12110.1; Note=nitrate transporter 1.1; curator_summary=Encodes NRT1.1 (CHL1)%2C a dual-affinity nitrate transporter. The protein is expressed in guard cells and function in stomatal opening. Mutants have less transpiration and are more tolerant to drought. Expressed in lateral roots. Involved in nitrate signaling which enables the plant root system to detect and exploit nitrate-rich soil patches. Comparing to the wild type%2C the mutant displays a strongly decreased lateral root proliferation phenotype in nitrate rich patches on growth medium.; conf_class=2; symbol=NRT1.1; Alias=ATNRT1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, AtNPF6.3, B-1, CHL1-1, CHL1, CHLORINA 1, NPF6.3, NRT1/ PTR family 6.3, NRT1, NITRATE TRANSPORTER 1; full_name=nitrate transporter 1.1; computational_description=nitrate transporter 1.1 (NRT1.1)%3B FUNCTIONS IN: transporter activity%2C nitrate transmembrane transporter activity%3B INVOLVED IN: response to water deprivation%2C nitrate transport%2C response to nitrate%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter%2C conserved site (InterPro:IPR018456)%2C Oligopeptide transporter (InterPro:IPR000109)%2C Major facilitator superfamily%2C general substrate transporter (InterPro:IPR016196)%3B BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT2G26690.1)%3B Has 6820 Blast hits to 6682 proteins in 1271 species: Archae - 0%3B Bacteria - 3284%3B Metazoa - 500%3B Fungi - 374%3B Plants - 2207%3B Viruses - 0%3B Other Eukaryotes - 455 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10948265, PMID:10417701, PMID:9844028, PMID:9014362, PMID:8755617, PMID:7656990, PMID:7919993, PMID:8264579, PMID:8510658, PMID:1534867, PMID:11289304, PMID:11912226, PMID:11912225, PMID:12509525, PMID:12606566, PMID:12668777, PMID:12805624, PMID:16014362, PMID:16160849, PMID:16415212, PMID:16998085, PMID:16980702, PMID:17148611, PMID:17519352, PMID:17481610, PMID:17578866, PMID:18304979, PMID:18266918, PMID:18467466, PMID:18563586, PMID:18650403, PMID:18753286, PMID:16229082, PMID:19540016, PMID:19633234, PMID:19732351, PMID:19829067, PMID:20627075, PMID:19766570, PMID:20009559, PMID:21052766, PMID:21118821, PMID:21182762, PMID:21151904, PMID:21239382, PMID:21904872, PMID:21448006, PMID:22880003, PMID:22858636, PMID:23154505, PMID:23305042, PMID:23602109, PMID:23682113, PMID:23645597, PMID:23731054, PMID:24089435, PMID:24572366, PMID:24572362, PMID:24532451, PMID:24642706, PMID:24737862, PMID:25106820, PMID:25723764, locus:2008855; locus_type=protein_coding
AT1TE13360	chr1:004109989	0.0	W/4109989-4110103	AT1TE13360 transposable_element AT1TE13360 ID=AT1TE13360; Name=AT1TE13360; Alias=AT9NMU1
AT1TE13365	chr1:004110104	0.0	W/4110104-4111021	AT1TE13365 transposable_element AT1TE13365 ID=AT1TE13365; Name=AT1TE13365; Alias=AT9NMU1
AT1TE13370	chr1:004111033	0.0	C/4111033-4111110	AT1TE13370 transposable_element AT1TE13370 ID=AT1TE13370; Name=AT1TE13370; Alias=ARNOLDY2
AT1TE13375	chr1:004111111	0.0	W/4111111-4113062	AT1TE13375 transposable_element AT1TE13375 ID=AT1TE13375; Name=AT1TE13375; Alias=ARNOLDY1
AT1TE13380	chr1:004113063	0.0	C/4113063-4113122	AT1TE13380 transposable_element AT1TE13380 ID=AT1TE13380; Name=AT1TE13380; Alias=ARNOLD1
AT1G12120.1	chr1:004114933	0.0	C/4114933-4116270,4116356-4116469	AT1G12120.1 CDS AT1G12120 ID=AT1G12120.1; Parent=AT1G12120; Name=AT1G12120.1; Note=hypothetical protein (DUF863); conf_class=2; computational_description=Plant protein of unknown function (DUF863)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF863%2C plant (InterPro:IPR008581)%3B BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF863) (TAIR:AT1G62530.2)%3B Has 160 Blast hits to 145 proteins in 37 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 12%3B Fungi - 14%3B Plants - 101%3B Viruses - 0%3B Other Eukaryotes - 31 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, locus:2201956; locus_type=protein_coding
AT1G12130.1	chr1:004118594	0.0	W/4118594-4119146,4119632-4119702,4119819-4119965,4120075-4120293,4120449-4120871	AT1G12130.1 CDS AT1G12130 ID=AT1G12130.1; Parent=AT1G12130; Name=AT1G12130.1; Note=Flavin-binding monooxygenase family protein; conf_class=1; computational_description=Flavin-binding monooxygenase family protein%3B FUNCTIONS IN: NADP or NADPH binding%2C monooxygenase activity%2C FAD binding%2C flavin-containing monooxygenase activity%3B INVOLVED IN: oxidation reduction%3B CONTAINS InterPro DOMAIN/s: Flavin-containing monooxygenase FMO (InterPro:IPR000960)%2C Flavin-containing monooxygenase-like (InterPro:IPR020946)%3B BEST Arabidopsis thaliana protein match is: Flavin-binding monooxygenase family protein (TAIR:AT1G12160.1)%3B Has 14567 Blast hits to 13953 proteins in 1841 species: Archae - 71%3B Bacteria - 7478%3B Metazoa - 1324%3B Fungi - 1597%3B Plants - 844%3B Viruses - 0%3B Other Eukaryotes - 3253 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15937229, PMID:20736450, locus:2201981; locus_type=protein_coding
AT1G12140.1	chr1:004121386	0.0	W/4121386-4121932,4122016-4122086,4122454-4122606,4122674-4122892,4122977-4123366	AT1G12140.1 CDS AT1G12140 ID=AT1G12140.1; Parent=AT1G12140; Name=AT1G12140.1; Note=flavin-monooxygenase glucosinolate S-oxygenase 5; curator_summary=belongs to the flavin-monooxygenase (FMO) family%2C encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates; conf_class=2; symbol=FMO GS-OX5; full_name=flavin-monooxygenase glucosinolate S-oxygenase 5; computational_description=flavin-monooxygenase glucosinolate S-oxygenase 5 (FMO GS-OX5)%3B FUNCTIONS IN: monooxygenase activity%2C 8-methylthiopropyl glucosinolate S-oxygenase activity%2C flavin-containing monooxygenase activity%3B INVOLVED IN: glucosinolate biosynthetic process%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Flavin-containing monooxygenase FMO (InterPro:IPR000960)%2C Flavin-containing monooxygenase-like (InterPro:IPR020946)%3B BEST Arabidopsis thaliana protein match is: flavin-monooxygenase glucosinolate S-oxygenase 3 (TAIR:AT1G62560.1)%3B Has 12586 Blast hits to 12018 proteins in 1454 species: Archae - 35%3B Bacteria - 5986%3B Metazoa - 1231%3B Fungi - 1610%3B Plants - 812%3B Viruses - 0%3B Other Eukaryotes - 2912 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16911220, PMID:18799661, PMID:20736450, PMID:21078824, locus:2201971; locus_type=protein_coding
AT1G12140.2	chr1:004121386	0.0	W/4121386-4121932,4122022-4122086,4122454-4122606,4122674-4122892,4122977-4123366	AT1G12140.2 CDS AT1G12140 ID=AT1G12140.2; Parent=AT1G12140; Name=AT1G12140.2; Note=flavin-monooxygenase glucosinolate S-oxygenase 5; curator_summary=belongs to the flavin-monooxygenase (FMO) family%2C encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates; conf_class=2; symbol=FMO GS-OX5; full_name=flavin-monooxygenase glucosinolate S-oxygenase 5; computational_description=flavin-monooxygenase glucosinolate S-oxygenase 5 (FMO GS-OX5)%3B FUNCTIONS IN: monooxygenase activity%2C 8-methylthiopropyl glucosinolate S-oxygenase activity%2C flavin-containing monooxygenase activity%3B INVOLVED IN: glucosinolate biosynthetic process%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Flavin-containing monooxygenase FMO (InterPro:IPR000960)%2C Flavin-containing monooxygenase-like (InterPro:IPR020946)%3B BEST Arabidopsis thaliana protein match is: flavin-monooxygenase glucosinolate S-oxygenase 3 (TAIR:AT1G62560.1)%3B Has 12586 Blast hits to 12018 proteins in 1454 species: Archae - 35%3B Bacteria - 5986%3B Metazoa - 1231%3B Fungi - 1610%3B Plants - 812%3B Viruses - 0%3B Other Eukaryotes - 2912 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16911220, PMID:18799661, PMID:20736450, PMID:21078824, locus:2201971; locus_type=protein_coding
AT1G12140.3	chr1:004121386	0.0	W/4121386-4121932,4122016-4122086,4122454-4122606,4122674-4122892,4122977-4123366	AT1G12140.3 CDS AT1G12140 ID=AT1G12140.3; Parent=AT1G12140; Name=AT1G12140.3; Note=flavin-monooxygenase glucosinolate S-oxygenase 5; symbol=FMO GS-OX5; full_name=flavin-monooxygenase glucosinolate S-oxygenase 5; Dbxref=PMID:16911220, PMID:18799661, PMID:20736450, PMID:21078824, locus:2201971; curator_summary=belongs to the flavin-monooxygenase (FMO) family%2C encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates; computational_description=flavin-monooxygenase glucosinolate S-oxygenase 5 (FMO GS-OX5)%3B FUNCTIONS IN: monooxygenase activity%2C 8-methylthiopropyl glucosinolate S-oxygenase activity%2C flavin-containing monooxygenase activity%3B INVOLVED IN: glucosinolate biosynthetic process%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Flavin-containing monooxygenase FMO (InterPro:IPR000960)%2C Flavin-containing monooxygenase-like (InterPro:IPR020946)%3B BEST Arabidopsis thaliana protein match is: flavin-monooxygenase glucosinolate S-oxygenase 3 (TAIR:AT1G62560.1)%3B Has 12586 Blast hits to 12018 proteins in 1454 species: Archae - 35%3B Bacteria - 5986%3B Metazoa - 1231%3B Fungi - 1610%3B Plants - 812%3B Viruses - 0%3B Other Eukaryotes - 2912 (source: NCBI BLink).; locus_type=protein_coding
AT1G04927.1	chr1:004122066	0.0	C/4122066-4122474	AT1G04927.1 antisense_lncRNA AT1G04927 ID=AT1G04927.1; Parent=AT1G04927; Name=AT1G04927.1; description=Natural antisense transcript overlaps with AT1G12140; Note=Natural antisense transcript overlaps with AT1G12140; locus_type=antisense_long_noncoding_rna
AT1G12150.1	chr1:004123530	0.0	C/4123530-4125005,4125158-4125328	AT1G12150.1 CDS AT1G12150 ID=AT1G12150.1; Parent=AT1G12150; Name=AT1G12150.1; Note=weak chloroplast movement under blue light protein (DUF827); conf_class=2; computational_description=Plant protein of unknown function (DUF827)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827%2C plant (InterPro:IPR008545)%3B BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF827) (TAIR:AT4G17210.1)%3B Has 175296 Blast hits to 90319 proteins in 3640 species: Archae - 2475%3B Bacteria - 39608%3B Metazoa - 72017%3B Fungi - 13793%3B Plants - 10094%3B Viruses - 656%3B Other Eukaryotes - 36653 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, PMID:20736450, PMID:21284606, locus:2201961; locus_type=protein_coding
AT1G12150.2	chr1:004123530	0.0	C/4123530-4125005,4125158-4125328	AT1G12150.2 CDS AT1G12150 ID=AT1G12150.2; Parent=AT1G12150; Name=AT1G12150.2; Note=weak chloroplast movement under blue light protein (DUF827); Dbxref=PMID:18775970, PMID:20736450, PMID:21284606, locus:2201961; computational_description=Plant protein of unknown function (DUF827)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827%2C plant (InterPro:IPR008545)%3B BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF827) (TAIR:AT4G17210.1)%3B Has 175296 Blast hits to 90319 proteins in 3640 species: Archae - 2475%3B Bacteria - 39608%3B Metazoa - 72017%3B Fungi - 13793%3B Plants - 10094%3B Viruses - 656%3B Other Eukaryotes - 36653 (source: NCBI BLink).; locus_type=protein_coding
AT1G04933.1	chr1:004123641	0.0	W/4123641-4124165	AT1G04933.1 antisense_lncRNA AT1G04933 ID=AT1G04933.1; Parent=AT1G04933; Name=AT1G04933.1; description=Natural antisense transcript overlaps with AT1G12150; Note=Natural antisense transcript overlaps with AT1G12150; locus_type=antisense_long_noncoding_rna
AT1G04933.2	chr1:004123641	0.0	W/4123641-4125090	AT1G04933.2 antisense_lncRNA AT1G04933 ID=AT1G04933.2; Parent=AT1G04933; Name=AT1G04933.2; description=Natural antisense transcript overlaps with AT1G12150; Note=Natural antisense transcript overlaps with AT1G12150; locus_type=antisense_long_noncoding_rna
AT1G12160.1	chr1:004126068	0.0	W/4126068-4126611,4126694-4126764,4126868-4127011,4127093-4127311,4127662-4128090	AT1G12160.1 CDS AT1G12160 ID=AT1G12160.1; Parent=AT1G12160; Name=AT1G12160.1; Note=Flavin-binding monooxygenase family protein; conf_class=2; computational_description=Flavin-binding monooxygenase family protein%3B FUNCTIONS IN: NADP or NADPH binding%2C monooxygenase activity%2C FAD binding%2C flavin-containing monooxygenase activity%3B INVOLVED IN: oxidation reduction%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 15 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Flavin-containing monooxygenase FMO (InterPro:IPR000960)%2C Flavin-containing monooxygenase-like (InterPro:IPR020946)%3B BEST Arabidopsis thaliana protein match is: Flavin-binding monooxygenase family protein (TAIR:AT1G12130.1)%3B Has 8661 Blast hits to 8102 proteins in 1035 species: Archae - 4%3B Bacteria - 3767%3B Metazoa - 1139%3B Fungi - 1126%3B Plants - 753%3B Viruses - 0%3B Other Eukaryotes - 1872 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:20226671, PMID:20736450, locus:2202038; locus_type=protein_coding
AT1G12170.1	chr1:004128607	0.0	C/4128607-4129701	AT1G12170.1 CDS AT1G12170 ID=AT1G12170.1; Parent=AT1G12170; Name=AT1G12170.1; Note=F-box family protein; conf_class=9; computational_description=F-box family protein%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%2C F-box associated domain%2C type 1 (InterPro:IPR006527)%2C F-box associated interaction domain (InterPro:IPR017451)%3B BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT1G12190.1)%3B Has 1693 Blast hits to 1645 proteins in 47 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1691%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=*; Dbxref=PMID:15141064, locus:2202023; locus_type=protein_coding
AT1TE13430	chr1:004129817	0.0	W/4129817-4130189	AT1TE13430 transposable_element AT1TE13430 ID=AT1TE13430; Name=AT1TE13430; Alias=BRODYAGA1A
AT1G12180.1	chr1:004130454	0.0	W/4130454-4130499,4130604-4130917	AT1G12180.1 CDS AT1G12180 ID=AT1G12180.1; Parent=AT1G12180; Name=AT1G12180.1; Note=14.7 kDa heat shock-like protein; conf_class=1; computational_description=BEST Arabidopsis thaliana protein match is: HSP20-like chaperones superfamily protein (TAIR:AT5G47600.1)%3B Has 8 Blast hits to 8 proteins in 3 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 8%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:2202012; locus_type=protein_coding
AT1G12190.1	chr1:004132967	0.0	C/4132967-4134094	AT1G12190.1 CDS AT1G12190 ID=AT1G12190.1; Parent=AT1G12190; Name=AT1G12190.1; Note=F-box and associated interaction domains-containing protein; conf_class=9; computational_description=F-box and associated interaction domains-containing protein%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%2C F-box associated domain%2C type 1 (InterPro:IPR006527)%2C F-box associated interaction domain (InterPro:IPR017451)%3B BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G12170.1)%3B Has 1345 Blast hits to 1311 proteins in 37 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1340%3B Viruses - 0%3B Other Eukaryotes - 5 (source: NCBI BLink).; conf_rating=*; Dbxref=locus:2202002; locus_type=protein_coding
AT1TE13440	chr1:004134118	0.0	W/4134118-4134164	AT1TE13440 transposable_element AT1TE13440 ID=AT1TE13440; Name=AT1TE13440; Alias=ATREP11
AT1TE13445	chr1:004134166	0.0	W/4134166-4134795	AT1TE13445 transposable_element AT1TE13445 ID=AT1TE13445; Name=AT1TE13445; Alias=ATREP10B
AT1G08885.1	chr1:004135434	0.0	C/4135434-4135988	AT1G08885.1 transcript_region AT1G08885 ID=AT1G08885.1; Parent=AT1G08885; computational_description=novel transcribed region; Name=AT1G08885.1; locus_type=novel_transcribed_region
AT1TE13450	chr1:004135742	0.0	C/4135742-4136147	AT1TE13450 transposable_element AT1TE13450 ID=AT1TE13450; Name=AT1TE13450; Alias=BRODYAGA2
AT1TE13455	chr1:004136148	0.0	W/4136148-4137348	AT1TE13455 transposable_element AT1TE13455 ID=AT1TE13455; Name=AT1TE13455; Alias=ATREP10B
AT1G12200.1	chr1:004137627	0.0	W/4137627-4138188,4138416-4138486,4138603-4138755,4138863-4138945,4139061-4139196,4139341-4139517,4139620-4139835	AT1G12200.1 CDS AT1G12200 ID=AT1G12200.1; Parent=AT1G12200; Name=AT1G12200.1; Note=Flavin-binding monooxygenase family protein; curator_summary=Putative flavin monooxygenase.; conf_class=2; symbol=FMO; full_name=flavin monooxygenase; computational_description=Flavin-binding monooxygenase family protein%3B FUNCTIONS IN: NADP or NADPH binding%2C monooxygenase activity%2C FAD binding%2C flavin-containing monooxygenase activity%3B INVOLVED IN: oxidation reduction%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Flavin-containing monooxygenase FMO (InterPro:IPR000960)%2C Flavin-containing monooxygenase-like (InterPro:IPR020946)%3B BEST Arabidopsis thaliana protein match is: Flavin-binding monooxygenase family protein (TAIR:AT1G62580.1)%3B Has 13440 Blast hits to 12864 proteins in 1673 species: Archae - 50%3B Bacteria - 7104%3B Metazoa - 1242%3B Fungi - 1614%3B Plants - 842%3B Viruses - 0%3B Other Eukaryotes - 2588 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:21418358, PMID:22491872, PMID:24371168, locus:2201991; locus_type=protein_coding
AT1G12200.2	chr1:004137627	0.0	W/4137627-4138188,4138416-4138486,4138603-4138755,4138863-4138945,4139061-4139340	AT1G12200.2 CDS AT1G12200 ID=AT1G12200.2; Parent=AT1G12200; Name=AT1G12200.2; Note=Flavin-binding monooxygenase family protein; symbol=FMO; full_name=flavin monooxygenase; curator_summary=Putative flavin monooxygenase.; computational_description=Flavin-binding monooxygenase family protein%3B FUNCTIONS IN: NADP or NADPH binding%2C monooxygenase activity%2C FAD binding%2C flavin-containing monooxygenase activity%3B INVOLVED IN: oxidation reduction%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Flavin-containing monooxygenase FMO (InterPro:IPR000960)%2C Flavin-containing monooxygenase-like (InterPro:IPR020946)%3B BEST Arabidopsis thaliana protein match is: Flavin-binding monooxygenase family protein (TAIR:AT1G62580.1)%3B Has 13440 Blast hits to 12864 proteins in 1673 species: Archae - 50%3B Bacteria - 7104%3B Metazoa - 1242%3B Fungi - 1614%3B Plants - 842%3B Viruses - 0%3B Other Eukaryotes - 2588 (source: NCBI BLink).; Dbxref=PMID:21418358, PMID:22491872, PMID:24371168, locus:2201991; locus_type=protein_coding
AT1G12210.1	chr1:004140948	0.0	W/4140948-4143605	AT1G12210.1 CDS AT1G12210 ID=AT1G12210.1; Parent=AT1G12210; Name=AT1G12210.1; Note=RPS5-like 1; curator_summary=RFL1 has high sequence similarity to the adjacent disease resistance (R) gene RPS5.; conf_class=4; symbol=RFL1; full_name=RPS5-like 1; computational_description=RPS5-like 1 (RFL1)%3B FUNCTIONS IN: ATP binding%3B INVOLVED IN: N-terminal protein myristoylation%2C response to bacterium%2C defense response%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: shoot apex%2C stem%2C embryo%2C sepal%2C stamen%3B EXPRESSED DURING: 4 anthesis%2C petal differentiation and expansion stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182)%2C Disease resistance protein (InterPro:IPR000767)%3B BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT1G12220.2)%3B Has 18050 Blast hits to 15832 proteins in 638 species: Archae - 19%3B Bacteria - 1098%3B Metazoa - 2850%3B Fungi - 219%3B Plants - 13503%3B Viruses - 0%3B Other Eukaryotes - 361 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:10101179, PMID:9724691, PMID:12912986, PMID:17956627, locus:2201986; locus_type=protein_coding
AT1G12210.2	chr1:004141074	0.0	W/4141074-4143605	AT1G12210.2 CDS AT1G12210 ID=AT1G12210.2; Parent=AT1G12210; Name=AT1G12210.2; Note=RPS5-like 1; symbol=RFL1; full_name=RPS5-like 1; curator_summary=RFL1 has high sequence similarity to the adjacent disease resistance (R) gene RPS5.; computational_description=RPS5-like 1 (RFL1)%3B FUNCTIONS IN: ATP binding%3B INVOLVED IN: N-terminal protein myristoylation%2C response to bacterium%2C defense response%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: shoot apex%2C stem%2C embryo%2C sepal%2C stamen%3B EXPRESSED DURING: 4 anthesis%2C petal differentiation and expansion stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182)%2C Disease resistance protein (InterPro:IPR000767)%3B BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT1G12220.2)%3B Has 18050 Blast hits to 15832 proteins in 638 species: Archae - 19%3B Bacteria - 1098%3B Metazoa - 2850%3B Fungi - 219%3B Plants - 13503%3B Viruses - 0%3B Other Eukaryotes - 361 (source: NCBI BLink).; Dbxref=PMID:10101179, PMID:9724691, PMID:12912986, PMID:17956627, locus:2201986; locus_type=protein_coding
AT1G12210.3	chr1:004141074	0.0	W/4141074-4143605	AT1G12210.3 CDS AT1G12210 ID=AT1G12210.3; Parent=AT1G12210; Name=AT1G12210.3; Note=RPS5-like 1; symbol=RFL1; full_name=RPS5-like 1; curator_summary=RFL1 has high sequence similarity to the adjacent disease resistance (R) gene RPS5.; computational_description=RPS5-like 1 (RFL1)%3B FUNCTIONS IN: ATP binding%3B INVOLVED IN: N-terminal protein myristoylation%2C response to bacterium%2C defense response%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: shoot apex%2C stem%2C embryo%2C sepal%2C stamen%3B EXPRESSED DURING: 4 anthesis%2C petal differentiation and expansion stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182)%2C Disease resistance protein (InterPro:IPR000767)%3B BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT1G12220.2)%3B Has 18050 Blast hits to 15832 proteins in 638 species: Archae - 19%3B Bacteria - 1098%3B Metazoa - 2850%3B Fungi - 219%3B Plants - 13503%3B Viruses - 0%3B Other Eukaryotes - 361 (source: NCBI BLink).; Dbxref=PMID:10101179, PMID:9724691, PMID:12912986, PMID:17956627, locus:2201986; locus_type=protein_coding
AT1G12211.1	chr1:004143866	0.0	C/4143866-4144114	AT1G12211.1 CDS AT1G12211 ID=AT1G12211.1; Parent=AT1G12211; Name=AT1G12211.1; Note=hypothetical protein; conf_class=10; computational_description=unknown protein%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=PMID:17395691, locus:4515102522; locus_type=protein_coding
AT1G12220.1	chr1:004145011	0.0	W/4145011-4147680	AT1G12220.1 CDS AT1G12220 ID=AT1G12220.1; Parent=AT1G12220; Name=AT1G12220.1; Note=Disease resistance protein (CC-NBS-LRR class) family; curator_summary=Resistance gene%2C mediates resistance against the bacterial pathogen Pseudomonas syringae. Contains a putative nucleotide binding site composed of kinase-1a (or P-loop)%2C kinase-2a%2C and putative kinase-3a domains%2C 13 imperfect leucine-rich repeats%2C a potential leucine zipper%2C and two uncharacterized motifs that are well conserved in products of previously isolated R genes. Confers resistance to Pseudomonas syringae strains that express avrPphB.; conf_class=1; symbol=RPS5; full_name=RESISTANT TO P. SYRINGAE 5; computational_description=RESISTANT TO P. SYRINGAE 5 (RPS5)%3B CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing protein (InterPro:IPR015766)%2C NB-ARC (InterPro:IPR002182)%2C Disease resistance protein (InterPro:IPR000767)%3B BEST Arabidopsis thaliana protein match is: LRR and NB-ARC domains-containing disease resistance protein (TAIR:AT1G12280.1)%3B Has 17406 Blast hits to 16115 proteins in 670 species: Archae - 23%3B Bacteria - 856%3B Metazoa - 2611%3B Fungi - 230%3B Plants - 13400%3B Viruses - 0%3B Other Eukaryotes - 286 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:10571892, PMID:10224270, PMID:10101179, PMID:9724691, PMID:9707643, PMID:8589418, PMID:11846877, PMID:11359614, PMID:11277440, PMID:11226196, PMID:12172007, PMID:12582885, PMID:12912986, PMID:17277084, PMID:19525323, PMID:19659661, PMID:20413097, PMID:21398259, PMID:22046960, PMID:22372664, PMID:23144618, PMID:24225654, PMID:24453975, PMID:25043057, locus:2201996; locus_type=protein_coding
AT1G12220.2	chr1:004145011	0.0	W/4145011-4147680	AT1G12220.2 CDS AT1G12220 ID=AT1G12220.2; Parent=AT1G12220; Name=AT1G12220.2; Note=Disease resistance protein (CC-NBS-LRR class) family; curator_summary=Resistance gene%2C mediates resistance against the bacterial pathogen Pseudomonas syringae. Contains a putative nucleotide binding site composed of kinase-1a (or P-loop)%2C kinase-2a%2C and putative kinase-3a domains%2C 13 imperfect leucine-rich repeats%2C a potential leucine zipper%2C and two uncharacterized motifs that are well conserved in products of previously isolated R genes. Confers resistance to Pseudomonas syringae strains that express avrPphB.; conf_class=4; symbol=RPS5; full_name=RESISTANT TO P. SYRINGAE 5; computational_description=RESISTANT TO P. SYRINGAE 5 (RPS5)%3B CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing protein (InterPro:IPR015766)%2C NB-ARC (InterPro:IPR002182)%2C Disease resistance protein (InterPro:IPR000767)%3B BEST Arabidopsis thaliana protein match is: LRR and NB-ARC domains-containing disease resistance protein (TAIR:AT1G12280.1)%3B Has 17406 Blast hits to 16115 proteins in 670 species: Archae - 23%3B Bacteria - 856%3B Metazoa - 2611%3B Fungi - 230%3B Plants - 13400%3B Viruses - 0%3B Other Eukaryotes - 286 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:10571892, PMID:10224270, PMID:10101179, PMID:9724691, PMID:9707643, PMID:8589418, PMID:11846877, PMID:11359614, PMID:11277440, PMID:11226196, PMID:12172007, PMID:12582885, PMID:12912986, PMID:17277084, PMID:19525323, PMID:19659661, PMID:20413097, PMID:21398259, PMID:22046960, PMID:22372664, PMID:23144618, PMID:24225654, PMID:24453975, PMID:25043057, locus:2201996; locus_type=protein_coding
AT1G12220.3	chr1:004145374	0.0	W/4145374-4147680	AT1G12220.3 CDS AT1G12220 ID=AT1G12220.3; Parent=AT1G12220; Name=AT1G12220.3; Note=Disease resistance protein (CC-NBS-LRR class) family; symbol=RPS5; full_name=RESISTANT TO P. SYRINGAE 5; curator_summary=Resistance gene%2C mediates resistance against the bacterial pathogen Pseudomonas syringae. Contains a putative nucleotide binding site composed of kinase-1a (or P-loop)%2C kinase-2a%2C and putative kinase-3a domains%2C 13 imperfect leucine-rich repeats%2C a potential leucine zipper%2C and two uncharacterized motifs that are well conserved in products of previously isolated R genes. Confers resistance to Pseudomonas syringae strains that express avrPphB.; computational_description=RESISTANT TO P. SYRINGAE 5 (RPS5)%3B CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing protein (InterPro:IPR015766)%2C NB-ARC (InterPro:IPR002182)%2C Disease resistance protein (InterPro:IPR000767)%3B BEST Arabidopsis thaliana protein match is: LRR and NB-ARC domains-containing disease resistance protein (TAIR:AT1G12280.1)%3B Has 17406 Blast hits to 16115 proteins in 670 species: Archae - 23%3B Bacteria - 856%3B Metazoa - 2611%3B Fungi - 230%3B Plants - 13400%3B Viruses - 0%3B Other Eukaryotes - 286 (source: NCBI BLink).; Dbxref=PMID:10571892, PMID:10224270, PMID:10101179, PMID:9724691, PMID:9707643, PMID:8589418, PMID:11846877, PMID:11359614, PMID:11277440, PMID:11226196, PMID:12172007, PMID:12582885, PMID:12912986, PMID:17277084, PMID:19525323, PMID:19659661, PMID:20413097, PMID:21398259, PMID:22046960, PMID:22372664, PMID:23144618, PMID:24225654, PMID:24453975, PMID:25043057, locus:2201996; locus_type=protein_coding
AT1G12230.1	chr1:004148050	0.0	W/4148050-4148103,4148194-4148335,4148739-4148817,4149080-4149155,4149250-4149333,4149427-4149531,4149621-4149701,4149777-4149841,4149936-4150005,4150079-4150254,4150339-4150477,4150562-4150708	AT1G12230.1 CDS AT1G12230 ID=AT1G12230.1; Parent=AT1G12230; Name=AT1G12230.1; Note=Aldolase superfamily protein; conf_class=2; computational_description=Aldolase superfamily protein%3B FUNCTIONS IN: transaldolase activity%2C zinc ion binding%3B INVOLVED IN: glucose catabolic process to lactate and acetate%2C 5-phosphoribose 1-diphosphate biosynthetic process%2C carbohydrate metabolic process%2C metabolic process%2C pentose-phosphate shunt%2C non-oxidative branch%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785)%2C Transaldolase (InterPro:IPR001585)%3B Has 7355 Blast hits to 7354 proteins in 2152 species: Archae - 59%3B Bacteria - 5481%3B Metazoa - 167%3B Fungi - 228%3B Plants - 79%3B Viruses - 10%3B Other Eukaryotes - 1331 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:18166134, PMID:18315867, PMID:18650403, PMID:20018591, PMID:20736450, locus:2202007; locus_type=protein_coding
AT1G12230.2	chr1:004148050	0.0	W/4148050-4148103,4148194-4148335,4148739-4148817,4148910-4148975,4149080-4149155,4149250-4149333,4149427-4149531,4149621-4149701,4149777-4149841,4149936-4150005,4150079-4150254,4150339-4150477,4150562-4150708	AT1G12230.2 CDS AT1G12230 ID=AT1G12230.2; Parent=AT1G12230; Name=AT1G12230.2; Note=Aldolase superfamily protein; conf_class=6; computational_description=Aldolase superfamily protein%3B FUNCTIONS IN: transaldolase activity%2C zinc ion binding%3B INVOLVED IN: glucose catabolic process to lactate and acetate%2C 5-phosphoribose 1-diphosphate biosynthetic process%2C carbohydrate metabolic process%2C metabolic process%2C pentose-phosphate shunt%2C non-oxidative branch%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785)%2C Transaldolase (InterPro:IPR001585)%3B Has 7355 Blast hits to 7354 proteins in 2152 species: Archae - 59%3B Bacteria - 5481%3B Metazoa - 167%3B Fungi - 228%3B Plants - 79%3B Viruses - 10%3B Other Eukaryotes - 1331 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:14576160, PMID:18166134, PMID:18315867, PMID:18650403, PMID:20018591, PMID:20736450, locus:2202007; locus_type=protein_coding
AT1G12240.1	chr1:004153699	0.0	W/4153699-4154101,4154430-4154438,4155090-4155334,4155840-4156457,4156564-4156976,4157062-4157149,4157239-4157457	AT1G12240.1 CDS AT1G12240 ID=AT1G12240.1; Parent=AT1G12240; Name=AT1G12240.1; Note=Glycosyl hydrolases family 32 protein; curator_summary=Encodes a vacuolar invertase betaFruct4. betaFruct4 is transported from the endoplasmic reticulum through the intermediate compartments as a membrane protein. The N-terminal cytoplasmic domain contains multiple sequence motifs that are involved at various stages in the trafficking of betaFruct4 from the ER to the central vacuole.; conf_class=2; symbol=ATBETAFRUCT4; computational_description=ATBETAFRUCT4%3B FUNCTIONS IN: hydrolase activity%2C hydrolyzing O-glycosyl compounds%2C beta-fructofuranosidase activity%3B INVOLVED IN: sucrose catabolic process%2C using beta-fructofuranosidase%2C carbohydrate metabolic process%3B LOCATED IN: vacuole%2C plant-type cell wall%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 16 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3357 (InterPro:IPR021792)%2C Glycoside hydrolase%2C family 32 (InterPro:IPR001362)%2C Glycoside hydrolase%2C family 32%2C active site (InterPro:IPR018053)%2C Glycosyl hydrolases family 32%2C N-terminal (InterPro:IPR013148)%2C Glycosyl hydrolase family 32%2C C-terminal (InterPro:IPR013189)%2C Concanavalin A-like lectin/glucanase (InterPro:IPR008985)%3B BEST Arabidopsis thaliana protein match is: Glycosyl hydrolases family 32 protein (TAIR:AT1G62660.1)%3B Has 4142 Blast hits to 4085 proteins in 1233 species: Archae - 18%3B Bacteria - 2511%3B Metazoa - 93%3B Fungi - 293%3B Plants - 1044%3B Viruses - 0%3B Other Eukaryotes - 183 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9332372, PMID:14871666, PMID:15056893, PMID:15052571, PMID:15494554, PMID:15539469, PMID:15548738, PMID:15734908, PMID:15860015, PMID:16262714, PMID:16489130, PMID:16481625, PMID:16553896, PMID:16807755, PMID:16927204, PMID:16916443, PMID:17172353, PMID:18650403, PMID:18710526, PMID:18775970, PMID:20207708, PMID:20736450, PMID:20699399, PMID:19737363, PMID:21139427, PMID:21899678, PMID:23175753, PMID:23737500, PMID:24836712, locus:2201966; locus_type=protein_coding
AT1G12244.1	chr1:004157719	0.0	W/4157719-4158039,4158119-4158291,4158367-4158435,4158618-4158669,4158744-4158893	AT1G12244.1 CDS AT1G12244 ID=AT1G12244.1; Parent=AT1G12244; Name=AT1G12244.1; Note=Polynucleotidyl transferase%2C ribonuclease H-like superfamily protein; conf_class=1; computational_description=Polynucleotidyl transferase%2C ribonuclease H-like superfamily protein%3B FUNCTIONS IN: hydrolase activity%2C acting on ester bonds%2C nucleic acid binding%3B INVOLVED IN: DNA repair%2C nucleobase%2C nucleoside%2C nucleotide and nucleic acid metabolic process%2C DNA recombination%2C response to DNA damage stimulus%3B LOCATED IN: endomembrane system%2C cytoplasm%3B CONTAINS InterPro DOMAIN/s: Resolvase%2C RNase H-like fold (InterPro:IPR006641)%2C Polynucleotidyl transferase%2C ribonuclease H fold (InterPro:IPR012337)%2C Resolvase%2C holliday junction-type%2C YqgF-like (InterPro:IPR005227)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:1009023117; locus_type=protein_coding
AT1G12250.1	chr1:004159287	0.0	W/4159287-4159450,4159565-4159750,4159854-4159883,4160064-4160170,4160734-4160768,4160862-4160990,4161078-4161269	AT1G12250.1 CDS AT1G12250 ID=AT1G12250.1; Parent=AT1G12250; Name=AT1G12250.1; Note=Pentapeptide repeat-containing protein; conf_class=2; computational_description=Pentapeptide repeat-containing protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: thylakoid%2C chloroplast thylakoid membrane%2C chloroplast thylakoid lumen%2C chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Pentapeptide repeat (InterPro:IPR001646)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G44920.2)%3B Has 7687 Blast hits to 4280 proteins in 513 species: Archae - 134%3B Bacteria - 5724%3B Metazoa - 1%3B Fungi - 0%3B Plants - 235%3B Viruses - 4%3B Other Eukaryotes - 1589 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11719511, PMID:14576160, PMID:14729914, PMID:15322131, PMID:17189325, PMID:18431481, PMID:18650403, PMID:20736450, PMID:22487254, locus:2202033; locus_type=protein_coding
AT1G12250.2	chr1:004159623	0.0	W/4159623-4159750,4159854-4159883,4160064-4160170,4160734-4160768,4160862-4160990,4161078-4161269	AT1G12250.2 CDS AT1G12250 ID=AT1G12250.2; Parent=AT1G12250; Name=AT1G12250.2; Note=Pentapeptide repeat-containing protein; conf_class=2; computational_description=Pentapeptide repeat-containing protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: thylakoid%2C chloroplast thylakoid membrane%2C chloroplast thylakoid lumen%2C chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Pentapeptide repeat (InterPro:IPR001646)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G44920.2)%3B Has 7687 Blast hits to 4280 proteins in 513 species: Archae - 134%3B Bacteria - 5724%3B Metazoa - 1%3B Fungi - 0%3B Plants - 235%3B Viruses - 4%3B Other Eukaryotes - 1589 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11719511, PMID:14576160, PMID:14729914, PMID:15322131, PMID:17189325, PMID:18431481, PMID:18650403, PMID:20736450, PMID:22487254, locus:2202033; locus_type=protein_coding
AT1G12250.3	chr1:004160089	0.0	W/4160089-4160170,4160734-4160768,4160862-4160990,4161078-4161269	AT1G12250.3 CDS AT1G12250 ID=AT1G12250.3; Parent=AT1G12250; Name=AT1G12250.3; Note=Pentapeptide repeat-containing protein; computational_description=Pentapeptide repeat-containing protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: thylakoid%2C chloroplast thylakoid membrane%2C chloroplast thylakoid lumen%2C chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Pentapeptide repeat (InterPro:IPR001646)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G44920.2)%3B Has 7687 Blast hits to 4280 proteins in 513 species: Archae - 134%3B Bacteria - 5724%3B Metazoa - 1%3B Fungi - 0%3B Plants - 235%3B Viruses - 4%3B Other Eukaryotes - 1589 (source: NCBI BLink).; Dbxref=PMID:11719511, PMID:14576160, PMID:14729914, PMID:15322131, PMID:17189325, PMID:18431481, PMID:18650403, PMID:20736450, PMID:22487254, locus:2202033; locus_type=protein_coding
AT1G12260.1	chr1:004163058	0.0	C/4163058-4163813,4163959-4164230,4164327-4164486	AT1G12260.1 CDS AT1G12260 ID=AT1G12260.1; Parent=AT1G12260; Name=AT1G12260.1; Note=NAC 007; curator_summary=Encodes a NAC-domain transcription factor that is expressed in developing xylem. Over expression of this protein causes ectopic secondary cell wall growth. Complements some of the cell wall defects seen in SND1/NST1 double mutants.; conf_class=2; symbol=NAC007; Alias=ANAC007, NAC 007, EMB2749, EMBRYO DEFECTIVE 2749, VND4, VASCULAR RELATED NAC-DOMAIN PROTEIN 4; full_name=NAC 007; computational_description=NAC 007 (NAC007)%3B CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441)%3B BEST Arabidopsis thaliana protein match is: Arabidopsis NAC domain containing protein 26 (TAIR:AT1G62700.1)%3B Has 3158 Blast hits to 3153 proteins in 90 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 15%3B Fungi - 2%3B Plants - 3027%3B Viruses - 0%3B Other Eukaryotes - 114 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:15029955, PMID:16103214, PMID:17565617, PMID:18775970, PMID:22589469, PMID:25148240, locus:2202028; locus_type=protein_coding
AT1G12260.2	chr1:004163058	0.0	C/4163058-4163369,4163529-4163813,4163959-4164230,4164327-4164486	AT1G12260.2 CDS AT1G12260 ID=AT1G12260.2; Parent=AT1G12260; Name=AT1G12260.2; Note=NAC 007; symbol=NAC007; Alias=ANAC007, NAC 007, EMB2749, EMBRYO DEFECTIVE 2749, VND4, VASCULAR RELATED NAC-DOMAIN PROTEIN 4; full_name=NAC 007; curator_summary=Encodes a NAC-domain transcription factor that is expressed in developing xylem. Over expression of this protein causes ectopic secondary cell wall growth. Complements some of the cell wall defects seen in SND1/NST1 double mutants.; computational_description=NAC 007 (NAC007)%3B CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441)%3B BEST Arabidopsis thaliana protein match is: Arabidopsis NAC domain containing protein 26 (TAIR:AT1G62700.1)%3B Has 3158 Blast hits to 3153 proteins in 90 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 15%3B Fungi - 2%3B Plants - 3027%3B Viruses - 0%3B Other Eukaryotes - 114 (source: NCBI BLink).; Dbxref=PMID:11118137, PMID:15029955, PMID:16103214, PMID:17565617, PMID:18775970, PMID:22589469, PMID:25148240, locus:2202028; locus_type=protein_coding
AT1G04937.1	chr1:004168884	0.0	C/4168884-4169086	AT1G04937.1 lnc_RNA AT1G04937 ID=AT1G04937.1; Parent=AT1G04937; Name=AT1G04937.1; locus_type=long_noncoding_rna
AT1TE13560	chr1:004169823	0.0	W/4169823-4170537	AT1TE13560 transposable_element AT1TE13560 ID=AT1TE13560; Name=AT1TE13560; Alias=ATREP15
AT1G12270.1	chr1:004172105	0.0	W/4172105-4172983,4173119-4173407,4173550-4173635,4173737-4173960,4174045-4174111,4174211-4174270,4174462-4174575	AT1G12270.1 CDS AT1G12270 ID=AT1G12270.1; Parent=AT1G12270; Name=AT1G12270.1; Note=stress-inducible protein; curator_summary=Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010%2C Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.; conf_class=2; symbol=Hop1; full_name=Hop1; computational_description=stress-inducible protein%2C putative%3B FUNCTIONS IN: binding%3B INVOLVED IN: response to stress%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636)%2C Tetratricopeptide TPR-1 (InterPro:IPR001440)%2C Tetratricopeptide-like helical (InterPro:IPR011990)%2C Tetratricopeptide repeat-containing (InterPro:IPR013026)%2C Tetratricopeptide repeat (InterPro:IPR019734)%3B BEST Arabidopsis thaliana protein match is: stress-inducible protein%2C putative (TAIR:AT1G62740.1)%3B Has 37869 Blast hits to 17250 proteins in 1367 species: Archae - 1337%3B Bacteria - 11482%3B Metazoa - 9184%3B Fungi - 2650%3B Plants - 3694%3B Viruses - 39%3B Other Eukaryotes - 9483 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12777046, PMID:18182375, PMID:20736450, PMID:20856808, PMID:21596689, locus:2034620; locus_type=protein_coding
AT1G12280.1	chr1:004174875	0.0	C/4174875-4177559	AT1G12280.1 CDS AT1G12280 ID=AT1G12280.1; Parent=AT1G12280; Name=AT1G12280.1; Note=LRR and NB-ARC domains-containing disease resistance protein; curator_summary=Encodes a NB-LRR protein SUMM2 involved in defense response to bacterium.; conf_class=4; symbol=SUMM2; full_name=suppressor of mkk1 mkk2 2; computational_description=LRR and NB-ARC domains-containing disease resistance protein%3B FUNCTIONS IN: ATP binding%3B INVOLVED IN: N-terminal protein myristoylation%2C defense response%2C apoptosis%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 13 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182)%2C Disease resistance protein (InterPro:IPR000767)%3B BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT1G12220.2)%3B Has 17827 Blast hits to 16139 proteins in 646 species: Archae - 26%3B Bacteria - 895%3B Metazoa - 2143%3B Fungi - 215%3B Plants - 14237%3B Viruses - 0%3B Other Eukaryotes - 311 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:12912986, PMID:17956627, PMID:22643122, PMID:22423965, PMID:25603932, locus:2034770; locus_type=protein_coding
AT1G12280.2	chr1:004174875	0.0	C/4174875-4176301,4176401-4177445	AT1G12280.2 CDS AT1G12280 ID=AT1G12280.2; Parent=AT1G12280; Name=AT1G12280.2; Note=LRR and NB-ARC domains-containing disease resistance protein; symbol=SUMM2; full_name=suppressor of mkk1 mkk2 2; curator_summary=Encodes a NB-LRR protein SUMM2 involved in defense response to bacterium.; computational_description=LRR and NB-ARC domains-containing disease resistance protein%3B FUNCTIONS IN: ATP binding%3B INVOLVED IN: N-terminal protein myristoylation%2C defense response%2C apoptosis%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 13 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182)%2C Disease resistance protein (InterPro:IPR000767)%3B BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT1G12220.2)%3B Has 17827 Blast hits to 16139 proteins in 646 species: Archae - 26%3B Bacteria - 895%3B Metazoa - 2143%3B Fungi - 215%3B Plants - 14237%3B Viruses - 0%3B Other Eukaryotes - 311 (source: NCBI BLink).; Dbxref=PMID:12912986, PMID:17956627, PMID:22643122, PMID:22423965, PMID:25603932, locus:2034770; locus_type=protein_coding
AT1G12290.1	chr1:004178593	0.0	C/4178593-4181247	AT1G12290.1 CDS AT1G12290 ID=AT1G12290.1; Parent=AT1G12290; Name=AT1G12290.1; Note=Disease resistance protein (CC-NBS-LRR class) family; conf_class=4; computational_description=Disease resistance protein (CC-NBS-LRR class) family%3B FUNCTIONS IN: ATP binding%3B INVOLVED IN: N-terminal protein myristoylation%2C defense response%3B EXPRESSED IN: stem%2C inflorescence meristem%2C root%2C stamen%3B EXPRESSED DURING: 4 anthesis%3B CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182)%2C Disease resistance protein (InterPro:IPR000767)%3B BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT1G12220.2)%3B Has 16903 Blast hits to 15496 proteins in 648 species: Archae - 22%3B Bacteria - 963%3B Metazoa - 2036%3B Fungi - 239%3B Plants - 13383%3B Viruses - 4%3B Other Eukaryotes - 256 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:12777046, PMID:12912986, PMID:16798885, PMID:17956627, PMID:18650403, locus:2034765; locus_type=protein_coding
AT1G12290.2	chr1:004178593	0.0	C/4178593-4181121	AT1G12290.2 CDS AT1G12290 ID=AT1G12290.2; Parent=AT1G12290; Name=AT1G12290.2; Note=Disease resistance protein (CC-NBS-LRR class) family; conf_class=4; computational_description=Disease resistance protein (CC-NBS-LRR class) family%3B FUNCTIONS IN: ATP binding%3B INVOLVED IN: N-terminal protein myristoylation%2C defense response%3B EXPRESSED IN: stem%2C inflorescence meristem%2C root%2C stamen%3B EXPRESSED DURING: 4 anthesis%3B CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182)%2C Disease resistance protein (InterPro:IPR000767)%3B BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT1G12220.2)%3B Has 16903 Blast hits to 15496 proteins in 648 species: Archae - 22%3B Bacteria - 963%3B Metazoa - 2036%3B Fungi - 239%3B Plants - 13383%3B Viruses - 4%3B Other Eukaryotes - 256 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:12777046, PMID:12912986, PMID:16798885, PMID:17956627, PMID:18650403, locus:2034765; locus_type=protein_coding
AT1G12290.3	chr1:004178593	0.0	C/4178593-4181121	AT1G12290.3 CDS AT1G12290 ID=AT1G12290.3; Parent=AT1G12290; Name=AT1G12290.3; Note=Disease resistance protein (CC-NBS-LRR class) family; Dbxref=PMID:12777046, PMID:12912986, PMID:16798885, PMID:17956627, PMID:18650403, locus:2034765; computational_description=Disease resistance protein (CC-NBS-LRR class) family%3B FUNCTIONS IN: ATP binding%3B INVOLVED IN: N-terminal protein myristoylation%2C defense response%3B EXPRESSED IN: stem%2C inflorescence meristem%2C root%2C stamen%3B EXPRESSED DURING: 4 anthesis%3B CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182)%2C Disease resistance protein (InterPro:IPR000767)%3B BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT1G12220.2)%3B Has 16903 Blast hits to 15496 proteins in 648 species: Archae - 22%3B Bacteria - 963%3B Metazoa - 2036%3B Fungi - 239%3B Plants - 13383%3B Viruses - 4%3B Other Eukaryotes - 256 (source: NCBI BLink).; locus_type=protein_coding
AT1G12290.4	chr1:004178593	0.0	C/4178593-4181121	AT1G12290.4 CDS AT1G12290 ID=AT1G12290.4; Parent=AT1G12290; Name=AT1G12290.4; Note=Disease resistance protein (CC-NBS-LRR class) family; Dbxref=PMID:12777046, PMID:12912986, PMID:16798885, PMID:17956627, PMID:18650403, locus:2034765; computational_description=Disease resistance protein (CC-NBS-LRR class) family%3B FUNCTIONS IN: ATP binding%3B INVOLVED IN: N-terminal protein myristoylation%2C defense response%3B EXPRESSED IN: stem%2C inflorescence meristem%2C root%2C stamen%3B EXPRESSED DURING: 4 anthesis%3B CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182)%2C Disease resistance protein (InterPro:IPR000767)%3B BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT1G12220.2)%3B Has 16903 Blast hits to 15496 proteins in 648 species: Archae - 22%3B Bacteria - 963%3B Metazoa - 2036%3B Fungi - 239%3B Plants - 13383%3B Viruses - 4%3B Other Eukaryotes - 256 (source: NCBI BLink).; locus_type=protein_coding
AT1G12294.1	chr1:004182132	0.0	C/4182132-4182299	AT1G12294.1 miRNA_primary_transcript AT1G12294 ID=AT1G12294.1; Parent=AT1G12294; Alias=p_MI0005102; Name=ath-MIR472; symbol=MIR472A; curator_summary=Encodes a microRNA that targets several CC-NBS-LRR family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UUUUUCCUACUCCGCCCAUAC; Note=microRNA ath-MIR472 precursor; full_name=microRNA472A; Dbxref=locus:4515102523, locus:4515102523; locus_type=mirna
ath-miR472-3p	chr1:004182143	0.0	C/4182143-4182164	ath-miR472-3p miRNA ath-miR472-3p ID=ath-miR472-3p; Alias=MIMAT0003931; Name=ath-miR472-3p; Derives_from=AT1G12294.1; Note=microRNA ath-miR472-3p; computational_description=mature miRNA accession:MIMAT0003931
ath-miR472-5p	chr1:004182266	0.0	C/4182266-4182286	ath-miR472-5p miRNA ath-miR472-5p ID=ath-miR472-5p; Alias=MIMAT0032014; Name=ath-miR472-5p; Derives_from=AT1G12294.1; Note=microRNA ath-miR472-5p; computational_description=mature miRNA accession:MIMAT0032014
AT1G12300.1	chr1:004184163	0.0	C/4184163-4186076	AT1G12300.1 CDS AT1G12300 ID=AT1G12300.1; Parent=AT1G12300; Name=AT1G12300.1; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; conf_class=1; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: mitochondrion%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G12775.1)%3B Has 69404 Blast hits to 15469 proteins in 318 species: Archae - 6%3B Bacteria - 74%3B Metazoa - 1057%3B Fungi - 1243%3B Plants - 64555%3B Viruses - 0%3B Other Eukaryotes - 2469 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:17400893, PMID:17521445, PMID:20032078, locus:2034760; locus_type=protein_coding
AT1G12310.1	chr1:004187500	0.0	C/4187500-4187946	AT1G12310.1 CDS AT1G12310 ID=AT1G12310.1; Parent=AT1G12310; Name=AT1G12310.1; Note=Calcium-binding EF-hand family protein; conf_class=1; computational_description=Calcium-binding EF-hand family protein%3B FUNCTIONS IN: calcium ion binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%2C nucleus%2C cytoplasm%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: EF-Hand 1%2C calcium-binding site (InterPro:IPR018247)%2C EF-HAND 2 (InterPro:IPR018249)%2C EF-hand-like domain (InterPro:IPR011992)%2C Calcium-binding EF-hand (InterPro:IPR002048)%2C EF-hand (InterPro:IPR018248)%3B BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT1G62820.1)%3B Has 15156 Blast hits to 13043 proteins in 1439 species: Archae - 0%3B Bacteria - 35%3B Metazoa - 6065%3B Fungi - 3861%3B Plants - 3197%3B Viruses - 0%3B Other Eukaryotes - 1998 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12372144, PMID:12045290, PMID:15276435, PMID:15720654, PMID:16023399, PMID:18775970, PMID:19686372, locus:2034635; locus_type=protein_coding
AT1G12320.1	chr1:004189424	0.0	W/4189424-4189483,4189631-4190209	AT1G12320.1 CDS AT1G12320 ID=AT1G12320.1; Parent=AT1G12320; Name=AT1G12320.1; Note=ankyrin repeat/KH domain protein (DUF1442); conf_class=1; computational_description=Protein of unknown function (DUF1442)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1442 (InterPro:IPR009902)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1442) (TAIR:AT1G62840.1)%3B Has 98 Blast hits to 98 proteins in 12 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 98%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:18055587, PMID:18775970, PMID:20736450, locus:2034645; locus_type=protein_coding
AT1G04943.1	chr1:004191063	0.0	C/4191063-4191268	AT1G04943.1 lnc_RNA AT1G04943 ID=AT1G04943.1; Parent=AT1G04943; Name=AT1G04943.1; locus_type=long_noncoding_rna
AT1G04947.1	chr1:004191471	0.0	W/4191471-4191780	AT1G04947.1 lnc_RNA AT1G04947 ID=AT1G04947.1; Parent=AT1G04947; Name=AT1G04947.1; locus_type=long_noncoding_rna
AT1TE13640	chr1:004193926	0.0	C/4193926-4194357	AT1TE13640 transposable_element AT1TE13640 ID=AT1TE13640; Name=AT1TE13640; Alias=ATREP19
AT1G12330.1	chr1:004194673	0.0	W/4194673-4194747,4195105-4196226,4196307-4196627	AT1G12330.1 CDS AT1G12330 ID=AT1G12330.1; Parent=AT1G12330; Name=AT1G12330.1; Note=cyclin-dependent kinase-like protein; conf_class=2; computational_description=unknown protein%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 12 growth stages%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12900.1)%3B Has 249 Blast hits to 249 proteins in 27 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 7%3B Fungi - 14%3B Plants - 217%3B Viruses - 0%3B Other Eukaryotes - 11 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:15618632, PMID:20736450, locus:2034745; locus_type=protein_coding
AT1G12340.1	chr1:004197396	0.0	W/4197396-4197443,4197518-4197699,4197779-4197901,4197996-4198032	AT1G12340.1 CDS AT1G12340 ID=AT1G12340.1; Parent=AT1G12340; Name=AT1G12340.1; Note=Cornichon family protein; conf_class=6; computational_description=Cornichon family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: intracellular signaling pathway%3B LOCATED IN: membrane%3B EXPRESSED IN: male gametophyte%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%3B CONTAINS InterPro DOMAIN/s: Cornichon (InterPro:IPR003377)%3B BEST Arabidopsis thaliana protein match is: Cornichon family protein (TAIR:AT1G12390.1)%3B Has 611 Blast hits to 611 proteins in 173 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 324%3B Fungi - 154%3B Plants - 92%3B Viruses - 0%3B Other Eukaryotes - 41 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:18775970, locus:2034655; locus_type=protein_coding
AT1G12350.1	chr1:004198870	0.0	W/4198870-4198999,4199084-4199201,4199300-4199344,4199445-4199530,4199633-4199685,4199784-4199843,4200005-4200106,4200191-4200310,4200394-4200633	AT1G12350.1 CDS AT1G12350 ID=AT1G12350.1; Parent=AT1G12350; Name=AT1G12350.1; Note=4-phospho-panto-thenoylcysteine synthetase; curator_summary=At1g12350 encodes phosphopantothenoylcysteine synthetase (phosphopantothenoylcysteine ligase). Its molecular function was shown to add cysteine forming (R)-4%E2%80%99-phospho-N-pantothenoylcysteine (PPC); conf_class=2; symbol=COAB; Alias=ATCOAB, 4-phospho-panto-thenoylcysteine synthetase; full_name=4-phospho-panto-thenoylcysteine synthetase; computational_description=4-phospho-panto-thenoylcysteine synthetase (COAB)%3B FUNCTIONS IN: phosphopantothenate--cysteine ligase activity%2C catalytic activity%3B INVOLVED IN: coenzyme A biosynthetic process%3B LOCATED IN: chloroplast%3B CONTAINS InterPro DOMAIN/s: DNA/pantothenate metabolism flavoprotein%2C C-terminal (InterPro:IPR007085)%3B BEST Arabidopsis thaliana protein match is: DNA / pantothenate metabolism flavoprotein (TAIR:AT5G02080.1)%3B Has 721 Blast hits to 697 proteins in 349 species: Archae - 42%3B Bacteria - 251%3B Metazoa - 127%3B Fungi - 134%3B Plants - 66%3B Viruses - 4%3B Other Eukaryotes - 97 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12860978, PMID:16415216, PMID:20736450, locus:2034690; locus_type=protein_coding
AT1G12350.2	chr1:004198870	0.0	W/4198870-4198999,4199084-4199201,4199300-4199344,4199445-4199530,4199633-4199685,4199784-4199843,4200005-4200106,4200191-4200310,4200394-4200633	AT1G12350.2 CDS AT1G12350 ID=AT1G12350.2; Parent=AT1G12350; Name=AT1G12350.2; Note=4-phospho-panto-thenoylcysteine synthetase; symbol=COAB; Alias=ATCOAB, 4-phospho-panto-thenoylcysteine synthetase; full_name=4-phospho-panto-thenoylcysteine synthetase; Dbxref=PMID:12860978, PMID:16415216, PMID:20736450, locus:2034690; curator_summary=At1g12350 encodes phosphopantothenoylcysteine synthetase (phosphopantothenoylcysteine ligase). Its molecular function was shown to add cysteine forming (R)-4%E2%80%99-phospho-N-pantothenoylcysteine (PPC); computational_description=4-phospho-panto-thenoylcysteine synthetase (COAB)%3B FUNCTIONS IN: phosphopantothenate--cysteine ligase activity%2C catalytic activity%3B INVOLVED IN: coenzyme A biosynthetic process%3B LOCATED IN: chloroplast%3B CONTAINS InterPro DOMAIN/s: DNA/pantothenate metabolism flavoprotein%2C C-terminal (InterPro:IPR007085)%3B BEST Arabidopsis thaliana protein match is: DNA / pantothenate metabolism flavoprotein (TAIR:AT5G02080.1)%3B Has 721 Blast hits to 697 proteins in 349 species: Archae - 42%3B Bacteria - 251%3B Metazoa - 127%3B Fungi - 134%3B Plants - 66%3B Viruses - 4%3B Other Eukaryotes - 97 (source: NCBI BLink).; locus_type=protein_coding
AT1G12360.1	chr1:004201172	0.0	W/4201172-4201244,4201952-4202010,4202114-4202195,4202288-4202366,4202448-4202498,4202594-4202690,4202775-4202807,4202973-4203098,4203175-4203366,4203511-4203594,4203684-4203782,4203865-4203938,4204172-4204268,4204495-4204620,4204712-4204807,4204891-4205010,4205089-4205163,4205257-4205456,4205702-4205792,4205895-4205984,4206088-4206144	AT1G12360.1 CDS AT1G12360 ID=AT1G12360.1; Parent=AT1G12360; Name=AT1G12360.1; Note=Sec1/munc18-like (SM) proteins superfamily; curator_summary=encodes a Sec1 protein and expressed throughout the plant. physically interacts with Syntaxin1 and is required for cytokinesis.; conf_class=2; symbol=KEU; Alias=SEC11; full_name=keule; computational_description=keule (KEU)%3B FUNCTIONS IN: protein transporter activity%3B INVOLVED IN: protein secretion%2C cytokinesis%3B LOCATED IN: cytosol%2C peripheral to membrane of membrane fraction%2C plasma membrane%2C vacuole%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Sec1-like protein (InterPro:IPR001619)%3B BEST Arabidopsis thaliana protein match is: Sec1/munc18-like (SM) proteins superfamily (TAIR:AT4G12120.1)%3B Has 1791 Blast hits to 1770 proteins in 229 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 744%3B Fungi - 510%3B Plants - 223%3B Viruses - 0%3B Other Eukaryotes - 314 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9750345, PMID:9003313, PMID:11084337, PMID:11591731, PMID:11157980, PMID:11378445, PMID:12068111, PMID:12239400, PMID:12421698, PMID:18650403, PMID:18775970, PMID:19067977, PMID:22595672, PMID:23572542, PMID:23702595, PMID:25619248, locus:2034670; locus_type=protein_coding
AT1G12370.1	chr1:004206500	0.0	C/4206500-4206685,4206798-4206869,4206944-4207025,4207112-4207152,4207243-4207279,4207368-4207525,4207641-4207881,4207971-4208317,4208534-4208842	AT1G12370.1 CDS AT1G12370 ID=AT1G12370.1; Parent=AT1G12370; Name=AT1G12370.1; Note=photolyase 1; curator_summary=encodes an amino acid sequence with significant homology to the recently characterized type II photolyases. The uvr2-1 mutant is unable to remove CPDs in vivo%2C and plant extracts lack detectable photolyase activity %2C is sensitive to UV-B and is an allele; conf_class=1; symbol=PHR1; Alias=UVR2, UV RESISTANCE 2; full_name=photolyase 1; computational_description=photolyase 1 (PHR1)%3B CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729)%2C DNA photolyase%2C N-terminal (InterPro:IPR006050)%2C DNA photolyase%2C FAD-binding/Cryptochrome%2C C-terminal (InterPro:IPR005101)%2C DNA photolyase%2C class 2 (InterPro:IPR008148)%3B Has 1792 Blast hits to 1788 proteins in 474 species: Archae - 23%3B Bacteria - 644%3B Metazoa - 122%3B Fungi - 53%3B Plants - 107%3B Viruses - 39%3B Other Eukaryotes - 804 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:10758502, PMID:10524761, PMID:9750104, PMID:9061951, PMID:8990208, PMID:9003312, PMID:11069284, PMID:11402206, PMID:12011338, PMID:18775970, PMID:19521716, PMID:20227927, locus:2034675; locus_type=protein_coding
AT1G12370.2	chr1:004206500	0.0	C/4206500-4206685,4206798-4206869,4206944-4207025,4207112-4207170,4207243-4207279,4207368-4207525,4207641-4207881,4207971-4208317,4208534-4208842	AT1G12370.2 CDS AT1G12370 ID=AT1G12370.2; Parent=AT1G12370; Name=AT1G12370.2; Note=photolyase 1; curator_summary=encodes an amino acid sequence with significant homology to the recently characterized type II photolyases. The uvr2-1 mutant is unable to remove CPDs in vivo%2C and plant extracts lack detectable photolyase activity %2C is sensitive to UV-B and is an allele; conf_class=2; symbol=PHR1; Alias=UVR2, UV RESISTANCE 2; full_name=photolyase 1; computational_description=photolyase 1 (PHR1)%3B CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729)%2C DNA photolyase%2C N-terminal (InterPro:IPR006050)%2C DNA photolyase%2C FAD-binding/Cryptochrome%2C C-terminal (InterPro:IPR005101)%2C DNA photolyase%2C class 2 (InterPro:IPR008148)%3B Has 1792 Blast hits to 1788 proteins in 474 species: Archae - 23%3B Bacteria - 644%3B Metazoa - 122%3B Fungi - 53%3B Plants - 107%3B Viruses - 39%3B Other Eukaryotes - 804 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10758502, PMID:10524761, PMID:9750104, PMID:9061951, PMID:8990208, PMID:9003312, PMID:11069284, PMID:11402206, PMID:12011338, PMID:18775970, PMID:19521716, PMID:20227927, locus:2034675; locus_type=protein_coding
AT1G12370.3	chr1:004206500	0.0	C/4206500-4206685,4206798-4206869,4206944-4207025,4207112-4207170,4207243-4207279,4207368-4207435,4207641-4207881,4207971-4208317,4208534-4208842	AT1G12370.3 CDS AT1G12370 ID=AT1G12370.3; Parent=AT1G12370; Name=AT1G12370.3; Note=photolyase 1; symbol=PHR1; Alias=UVR2, UV RESISTANCE 2; full_name=photolyase 1; curator_summary=encodes an amino acid sequence with significant homology to the recently characterized type II photolyases. The uvr2-1 mutant is unable to remove CPDs in vivo%2C and plant extracts lack detectable photolyase activity %2C is sensitive to UV-B and is an allele; computational_description=photolyase 1 (PHR1)%3B CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729)%2C DNA photolyase%2C N-terminal (InterPro:IPR006050)%2C DNA photolyase%2C FAD-binding/Cryptochrome%2C C-terminal (InterPro:IPR005101)%2C DNA photolyase%2C class 2 (InterPro:IPR008148)%3B Has 1792 Blast hits to 1788 proteins in 474 species: Archae - 23%3B Bacteria - 644%3B Metazoa - 122%3B Fungi - 53%3B Plants - 107%3B Viruses - 39%3B Other Eukaryotes - 804 (source: NCBI BLink).; Dbxref=PMID:10758502, PMID:10524761, PMID:9750104, PMID:9061951, PMID:8990208, PMID:9003312, PMID:11069284, PMID:11402206, PMID:12011338, PMID:18775970, PMID:19521716, PMID:20227927, locus:2034675; locus_type=protein_coding
AT1TE13690	chr1:004209164	0.0	C/4209164-4209607	AT1TE13690 transposable_element AT1TE13690 ID=AT1TE13690; Name=AT1TE13690; Alias=ATMU3N1
AT1G12380.1	chr1:004214499	0.0	C/4214499-4216880	AT1G12380.1 CDS AT1G12380 ID=AT1G12380.1; Parent=AT1G12380; Name=AT1G12380.1; Note=hypothetical protein; conf_class=1; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62870.1)%3B Has 173 Blast hits to 170 proteins in 34 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 25%3B Fungi - 8%3B Plants - 123%3B Viruses - 7%3B Other Eukaryotes - 6 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:20736450, locus:2034695; locus_type=protein_coding
AT1G12390.1	chr1:004220347	0.0	W/4220347-4220418,4220968-4221149,4221229-4221351,4221445-4221481	AT1G12390.1 CDS AT1G12390 ID=AT1G12390.1; Parent=AT1G12390; Name=AT1G12390.1; Note=Cornichon family protein; conf_class=2; computational_description=Cornichon family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: intracellular signaling pathway%3B LOCATED IN: endomembrane system%2C membrane%3B CONTAINS InterPro DOMAIN/s: Cornichon (InterPro:IPR003377)%3B BEST Arabidopsis thaliana protein match is: Cornichon family protein (TAIR:AT1G12340.1)%3B Has 617 Blast hits to 617 proteins in 176 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 324%3B Fungi - 159%3B Plants - 93%3B Viruses - 0%3B Other Eukaryotes - 41 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2034660; locus_type=protein_coding
AT1G12400.1	chr1:004222296	0.0	W/4222296-4222330,4222423-4222603	AT1G12400.1 CDS AT1G12400 ID=AT1G12400.1; Parent=AT1G12400; Name=AT1G12400.1; Note=Nucleotide excision repair%2C TFIIH%2C subunit TTDA; conf_class=1; computational_description=Nucleotide excision repair%2C TFIIH%2C subunit TTDA%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: nucleotide-excision repair%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Nucleotide excision repair%2C TFIIH%2C subunit TTDA (InterPro:IPR009400)%3B BEST Arabidopsis thaliana protein match is: Nucleotide excision repair%2C TFIIH%2C subunit TTDA (TAIR:AT1G62886.1)%3B Has 174 Blast hits to 174 proteins in 66 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 116%3B Fungi - 0%3B Plants - 48%3B Viruses - 0%3B Other Eukaryotes - 10 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15645454, PMID:18650403, PMID:20736450, locus:2034685; locus_type=protein_coding
AT1G12400.2	chr1:004222296	0.0	W/4222296-4222330,4222423-4222603	AT1G12400.2 CDS AT1G12400 ID=AT1G12400.2; Parent=AT1G12400; Name=AT1G12400.2; Note=Nucleotide excision repair%2C TFIIH%2C subunit TTDA; Dbxref=PMID:15645454, PMID:18650403, PMID:20736450, locus:2034685; computational_description=Nucleotide excision repair%2C TFIIH%2C subunit TTDA%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: nucleotide-excision repair%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Nucleotide excision repair%2C TFIIH%2C subunit TTDA (InterPro:IPR009400)%3B BEST Arabidopsis thaliana protein match is: Nucleotide excision repair%2C TFIIH%2C subunit TTDA (TAIR:AT1G62886.1)%3B Has 174 Blast hits to 174 proteins in 66 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 116%3B Fungi - 0%3B Plants - 48%3B Viruses - 0%3B Other Eukaryotes - 10 (source: NCBI BLink).; locus_type=protein_coding
AT1G12400.3	chr1:004222370	0.0	W/4222370-4222603	AT1G12400.3 CDS AT1G12400 ID=AT1G12400.3; Parent=AT1G12400; Name=AT1G12400.3; Note=Nucleotide excision repair%2C TFIIH%2C subunit TTDA; computational_description=Nucleotide excision repair%2C TFIIH%2C subunit TTDA%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: nucleotide-excision repair%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Nucleotide excision repair%2C TFIIH%2C subunit TTDA (InterPro:IPR009400)%3B BEST Arabidopsis thaliana protein match is: Nucleotide excision repair%2C TFIIH%2C subunit TTDA (TAIR:AT1G62886.1)%3B Has 174 Blast hits to 174 proteins in 66 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 116%3B Fungi - 0%3B Plants - 48%3B Viruses - 0%3B Other Eukaryotes - 10 (source: NCBI BLink).; Dbxref=PMID:15645454, PMID:18650403, PMID:20736450, locus:2034685; locus_type=protein_coding
AT1G12410.1	chr1:004223099	0.0	W/4223099-4223148,4223240-4223283,4223397-4223469,4223801-4223915,4224000-4224137,4224231-4224347,4224455-4224523,4224610-4224705,4224817-4224954	AT1G12410.1 CDS AT1G12410 ID=AT1G12410.1; Parent=AT1G12410; Name=AT1G12410.1; Note=CLP protease proteolytic subunit 2; curator_summary=Encodes a ClpP-related sequence. Though similar to ClpP proteins%2C this does not contains the highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).; conf_class=2; symbol=CLP2; Alias=CLPR2, EMB3146, EMBRYO DEFECTIVE 3146, NCLPP2, NUCLEAR-ENCODED CLP PROTEASE P2; full_name=CLP protease proteolytic subunit 2; computational_description=CLP protease proteolytic subunit 2 (CLP2)%3B FUNCTIONS IN: serine-type endopeptidase activity%3B INVOLVED IN: chloroplast organization%3B LOCATED IN: in 6 components%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase S14%2C ClpP (InterPro:IPR001907)%3B BEST Arabidopsis thaliana protein match is: plastid-encoded CLP P (TAIR:ATCG00670.1)%3B Has 13082 Blast hits to 13064 proteins in 2999 species: Archae - 2%3B Bacteria - 8275%3B Metazoa - 145%3B Fungi - 81%3B Plants - 1076%3B Viruses - 67%3B Other Eukaryotes - 3436 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10427773, PMID:11299370, PMID:11352464, PMID:11278690, PMID:12185496, PMID:14576160, PMID:14593120, PMID:16461379, PMID:16766689, PMID:16895613, PMID:16980539, PMID:17181860, PMID:17828791, PMID:18650403, PMID:19525416, PMID:19423572, PMID:23548781, locus:2034625; locus_type=protein_coding
AT1G12411.1	chr1:004225321	0.0	C/4225321-4225482	AT1G12411.1 CDS AT1G12411 ID=AT1G12411.1; Parent=AT1G12411; Name=AT1G12411.1; Note=hypothetical protein; conf_class=10; computational_description=unknown protein%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=PMID:17395691, locus:4515102524; locus_type=protein_coding
AT1G12420.1	chr1:004226673	0.0	C/4226673-4227029,4227116-4227220,4227323-4227895,4227979-4228046,4228130-4228244,4228327-4228372,4228856-4228917	AT1G12420.1 CDS AT1G12420 ID=AT1G12420.1; Parent=AT1G12420; Name=AT1G12420.1; Note=ACT domain repeat 8; conf_class=2; symbol=ACR8; full_name=ACT domain repeat 8; computational_description=ACT domain repeat 8 (ACR8)%3B CONTAINS InterPro DOMAIN/s: Amino acid-binding ACT (InterPro:IPR002912)%3B BEST Arabidopsis thaliana protein match is: ACT domain repeat 7 (TAIR:AT4G22780.1)%3B Has 2013 Blast hits to 1422 proteins in 371 species: Archae - 0%3B Bacteria - 1118%3B Metazoa - 0%3B Fungi - 0%3B Plants - 487%3B Viruses - 0%3B Other Eukaryotes - 408 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12481063, PMID:21838868, locus:2034630; locus_type=protein_coding
AT1G12420.2	chr1:004226673	0.0	C/4226673-4227029,4227116-4227220,4227323-4227895,4227979-4228046,4228130-4228136	AT1G12420.2 CDS AT1G12420 ID=AT1G12420.2; Parent=AT1G12420; Name=AT1G12420.2; Note=ACT domain repeat 8; symbol=ACR8; full_name=ACT domain repeat 8; computational_description=ACT domain repeat 8 (ACR8)%3B CONTAINS InterPro DOMAIN/s: Amino acid-binding ACT (InterPro:IPR002912)%3B BEST Arabidopsis thaliana protein match is: ACT domain repeat 7 (TAIR:AT4G22780.1)%3B Has 2013 Blast hits to 1422 proteins in 371 species: Archae - 0%3B Bacteria - 1118%3B Metazoa - 0%3B Fungi - 0%3B Plants - 487%3B Viruses - 0%3B Other Eukaryotes - 408 (source: NCBI BLink).; Dbxref=PMID:12481063, PMID:21838868, locus:2034630; locus_type=protein_coding
AT1G12430.1	chr1:004234122	0.0	C/4234122-4234285,4234364-4234492,4234560-4234703,4234798-4234923,4235016-4235141,4235250-4235342,4235433-4235571,4235675-4235806,4235889-4236023,4236111-4236254,4236345-4236548,4236661-4236749,4236864-4237013,4237153-4237306,4237386-4237793,4237890-4238012,4238097-4238197,4238354-4238552	AT1G12430.1 CDS AT1G12430 ID=AT1G12430.1; Parent=AT1G12430; Name=AT1G12430.1; Note=armadillo repeat kinesin 3; curator_summary=Encodes the kinesin-like protein PAK has an Armadillo motif tail and is involved in guard cell development in Arabidopsis (from Genbank record AF159052).However%2C no defect in stomatal complexes has been observed in loss of function mutations. It accumulates at the preprophase band (PPB) in a cell-cycle and microtubule-dependent manner and is most highly expressed in cells where the placement of the division plane (early embryogenesis%2C stomatal lineages) is critical.; conf_class=1; symbol=ARK3; Alias=AtKINUa, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, PAK, phosphatidic acid kinase; full_name=armadillo repeat kinesin 3; computational_description=armadillo repeat kinesin 3 (ARK3)%3B FUNCTIONS IN: microtubule motor activity%2C binding%2C ATP binding%3B INVOLVED IN: microtubule-based movement%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Kinesin%2C motor region%2C conserved site (InterPro:IPR019821)%2C Armadillo-like helical (InterPro:IPR011989)%2C Armadillo (InterPro:IPR000225)%2C Armadillo-type fold (InterPro:IPR016024)%2C Kinesin%2C motor domain (InterPro:IPR001752)%3B BEST Arabidopsis thaliana protein match is: armadillo repeat kinesin 2 (TAIR:AT1G01950.1)%3B Has 26314 Blast hits to 21250 proteins in 1081 species: Archae - 170%3B Bacteria - 1529%3B Metazoa - 12103%3B Fungi - 2761%3B Plants - 3107%3B Viruses - 18%3B Other Eukaryotes - 6626 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12946625, PMID:16469533, PMID:17971038, PMID:21387573, locus:2034640; locus_type=protein_coding
AT1G12430.2	chr1:004234122	0.0	C/4234122-4234285,4234364-4234495,4234560-4234703,4234798-4234923,4235016-4235141,4235250-4235342,4235433-4235571,4235675-4235806,4235889-4236023,4236111-4236254,4236345-4236548,4236661-4236749,4236864-4237013,4237153-4237306,4237386-4237793,4237890-4238012,4238097-4238197,4238354-4238552	AT1G12430.2 CDS AT1G12430 ID=AT1G12430.2; Parent=AT1G12430; Name=AT1G12430.2; Note=armadillo repeat kinesin 3; curator_summary=Encodes the kinesin-like protein PAK has an Armadillo motif tail and is involved in guard cell development in Arabidopsis (from Genbank record AF159052).However%2C no defect in stomatal complexes has been observed in loss of function mutations. It accumulates at the preprophase band (PPB) in a cell-cycle and microtubule-dependent manner and is most highly expressed in cells where the placement of the division plane (early embryogenesis%2C stomatal lineages) is critical.; conf_class=2; symbol=ARK3; Alias=AtKINUa, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, PAK, phosphatidic acid kinase; full_name=armadillo repeat kinesin 3; computational_description=armadillo repeat kinesin 3 (ARK3)%3B FUNCTIONS IN: microtubule motor activity%2C binding%2C ATP binding%3B INVOLVED IN: microtubule-based movement%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Kinesin%2C motor region%2C conserved site (InterPro:IPR019821)%2C Armadillo-like helical (InterPro:IPR011989)%2C Armadillo (InterPro:IPR000225)%2C Armadillo-type fold (InterPro:IPR016024)%2C Kinesin%2C motor domain (InterPro:IPR001752)%3B BEST Arabidopsis thaliana protein match is: armadillo repeat kinesin 2 (TAIR:AT1G01950.1)%3B Has 26314 Blast hits to 21250 proteins in 1081 species: Archae - 170%3B Bacteria - 1529%3B Metazoa - 12103%3B Fungi - 2761%3B Plants - 3107%3B Viruses - 18%3B Other Eukaryotes - 6626 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12946625, PMID:16469533, PMID:17971038, PMID:21387573, locus:2034640; locus_type=protein_coding
AT1G12440.1	chr1:004241816	0.0	C/4241816-4242322	AT1G12440.1 CDS AT1G12440 ID=AT1G12440.1; Parent=AT1G12440; Name=AT1G12440.1; Note=A20/AN1-like zinc finger family protein; conf_class=2; computational_description=A20/AN1-like zinc finger family protein%3B FUNCTIONS IN: DNA binding%2C zinc ion binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C AN1-type (InterPro:IPR000058)%2C Zinc finger%2C A20-type (InterPro:IPR002653)%3B BEST Arabidopsis thaliana protein match is: A20/AN1-like zinc finger family protein (TAIR:AT4G12040.2)%3B Has 1075 Blast hits to 1057 proteins in 149 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 452%3B Fungi - 9%3B Plants - 482%3B Viruses - 6%3B Other Eukaryotes - 126 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17033811, PMID:19000166, locus:2034650; locus_type=protein_coding
AT1G12440.2	chr1:004241816	0.0	C/4241816-4242322	AT1G12440.2 CDS AT1G12440 ID=AT1G12440.2; Parent=AT1G12440; Name=AT1G12440.2; Note=A20/AN1-like zinc finger family protein; conf_class=1; computational_description=A20/AN1-like zinc finger family protein%3B FUNCTIONS IN: DNA binding%2C zinc ion binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C AN1-type (InterPro:IPR000058)%2C Zinc finger%2C A20-type (InterPro:IPR002653)%3B BEST Arabidopsis thaliana protein match is: A20/AN1-like zinc finger family protein (TAIR:AT4G12040.2)%3B Has 1075 Blast hits to 1057 proteins in 149 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 452%3B Fungi - 9%3B Plants - 482%3B Viruses - 6%3B Other Eukaryotes - 126 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:17033811, PMID:19000166, locus:2034650; locus_type=protein_coding
AT1G12440.3	chr1:004241816	0.0	C/4241816-4242322	AT1G12440.3 CDS AT1G12440 ID=AT1G12440.3; Parent=AT1G12440; Name=AT1G12440.3; Note=A20/AN1-like zinc finger family protein; Dbxref=PMID:17033811, PMID:19000166, locus:2034650; computational_description=A20/AN1-like zinc finger family protein%3B FUNCTIONS IN: DNA binding%2C zinc ion binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C AN1-type (InterPro:IPR000058)%2C Zinc finger%2C A20-type (InterPro:IPR002653)%3B BEST Arabidopsis thaliana protein match is: A20/AN1-like zinc finger family protein (TAIR:AT4G12040.2)%3B Has 1075 Blast hits to 1057 proteins in 149 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 452%3B Fungi - 9%3B Plants - 482%3B Viruses - 6%3B Other Eukaryotes - 126 (source: NCBI BLink).; locus_type=protein_coding
AT1G12450.1	chr1:004244496	0.0	W/4244496-4244756,4244954-4245190,4245293-4245510,4245613-4245808	AT1G12450.1 CDS AT1G12450 ID=AT1G12450.1; Parent=AT1G12450; Name=AT1G12450.1; Note=SNARE associated Golgi protein family; conf_class=2; computational_description=SNARE associated Golgi protein family%3B CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414)%3B BEST Arabidopsis thaliana protein match is: SNARE associated Golgi protein family (TAIR:AT4G22850.1)%3B Has 1732 Blast hits to 1729 proteins in 535 species: Archae - 6%3B Bacteria - 860%3B Metazoa - 122%3B Fungi - 106%3B Plants - 250%3B Viruses - 0%3B Other Eukaryotes - 388 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16607029, PMID:18775970, locus:2034710; locus_type=protein_coding
AT1G12460.1	chr1:004247703	0.0	W/4247703-4248856,4248950-4250444	AT1G12460.1 CDS AT1G12460 ID=AT1G12460.1; Parent=AT1G12460; Name=AT1G12460.1; Note=Leucine-rich repeat protein kinase family protein; conf_class=2; computational_description=Leucine-rich repeat protein kinase family protein%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway%2C protein amino acid phosphorylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 9 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Leucine-rich repeat-containing N-terminal domain%2C type 2 (InterPro:IPR013210)%2C Leucine-rich repeat (InterPro:IPR001611)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%3B BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase family protein (TAIR:AT1G62950.1)%3B Has 167349 Blast hits to 109630 proteins in 4084 species: Archae - 101%3B Bacteria - 12513%3B Metazoa - 51063%3B Fungi - 7396%3B Plants - 77075%3B Viruses - 193%3B Other Eukaryotes - 19008 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12972053, PMID:16214899, PMID:17885082, PMID:20736450, PMID:21477822, locus:2034725; locus_type=protein_coding
AT1G12460.2	chr1:004247703	0.0	W/4247703-4248015,4248433-4248856,4248950-4250444	AT1G12460.2 CDS AT1G12460 ID=AT1G12460.2; Parent=AT1G12460; Name=AT1G12460.2; Note=Leucine-rich repeat protein kinase family protein; computational_description=Leucine-rich repeat protein kinase family protein%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway%2C protein amino acid phosphorylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 9 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Leucine-rich repeat-containing N-terminal domain%2C type 2 (InterPro:IPR013210)%2C Leucine-rich repeat (InterPro:IPR001611)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%3B BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase family protein (TAIR:AT1G62950.1)%3B Has 167349 Blast hits to 109630 proteins in 4084 species: Archae - 101%3B Bacteria - 12513%3B Metazoa - 51063%3B Fungi - 7396%3B Plants - 77075%3B Viruses - 193%3B Other Eukaryotes - 19008 (source: NCBI BLink).; Dbxref=PMID:12972053, PMID:16214899, PMID:17885082, PMID:20736450, PMID:21477822, locus:2034725; locus_type=protein_coding
AT1G12470.1	chr1:004251359	0.0	W/4251359-4251521,4251640-4251852,4251947-4252086,4252177-4252272,4252620-4252687,4252783-4252884,4252997-4253141,4253257-4253400,4253507-4253626,4253770-4253826,4253907-4253966,4254114-4254221,4254380-4254522,4254718-4254796,4254905-4254967,4255060-4255190,4255276-4255381,4255566-4255754,4255926-4256153,4256253-4256408,4256531-4256692,4256826-4256942,4257025-4257201	AT1G12470.1 CDS AT1G12470 ID=AT1G12470.1; Parent=AT1G12470; Name=AT1G12470.1; Note=zinc ion binding protein; conf_class=2; computational_description=zinc ion binding%3B FUNCTIONS IN: zinc ion binding%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Pep3/Vps18/deep orange (InterPro:IPR007810)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%3B Has 495 Blast hits to 471 proteins in 206 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 170%3B Fungi - 162%3B Plants - 42%3B Viruses - 0%3B Other Eukaryotes - 119 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12589039, PMID:15644464, locus:2034735; locus_type=protein_coding
AT1G12480.1	chr1:004257427	0.0	C/4257427-4257778,4257856-4258667,4258743-4259249	AT1G12480.1 CDS AT1G12480 ID=AT1G12480.1; Parent=AT1G12480; Name=AT1G12480.1; Note=C4-dicarboxylate transporter/malic acid transport protein; curator_summary=Encodes a membrane protein with 10 predicted transmembrane helices. SLAC1 is a multispanning membrane protein expressed predominantly in guard cells that plays a role in regulating cellular ion homeostasis and S-type anion currents. SLAC1 is important for normal stomatal closure in response to a variety of signals including elevated CO2%2C ozone%2C ABA%2C darkness%2C and humidity. SLAC1:GFP localizes to the plasma membrane.; conf_class=1; symbol=OZS1; Alias=CDI3, CARBON DIOXIDE INSENSITIVE 3, RCD3, RADICAL-INDUCED CELL DEATH 3, SLAC1, SLOW ANION CHANNEL-ASSOCIATED 1; full_name=OZONE-SENSITIVE 1; computational_description=OZONE-SENSITIVE 1 (OZS1)%3B CONTAINS InterPro DOMAIN/s: C4-dicarboxylate transporter/malic acid transport protein (InterPro:IPR004695)%3B BEST Arabidopsis thaliana protein match is: SLAC1 homologue 3 (TAIR:AT5G24030.1)%3B Has 903 Blast hits to 900 proteins in 365 species: Archae - 17%3B Bacteria - 650%3B Metazoa - 0%3B Fungi - 31%3B Plants - 165%3B Viruses - 0%3B Other Eukaryotes - 40 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:17227549, PMID:18084014, PMID:18305484, PMID:19181866, PMID:20128877, PMID:20345603, PMID:20522527, PMID:20626656, PMID:20385816, PMID:20981093, PMID:21586729, PMID:21423149, PMID:21746700, PMID:21931667, PMID:22126965, PMID:22730405, PMID:23073631, PMID:23126621, PMID:23226151, PMID:23396828, PMID:23526882, PMID:23452338, PMID:23090586, PMID:23703845, PMID:23630285, PMID:23766366, PMID:24033256, PMID:22935148, PMID:23950973, PMID:25599916, PMID:25695335, locus:2034700; locus_type=protein_coding
AT1G04953.1	chr1:004257863	0.0	W/4257863-4258637	AT1G04953.1 antisense_lncRNA AT1G04953 ID=AT1G04953.1; Parent=AT1G04953; Name=AT1G04953.1; description=Natural antisense transcript overlaps with AT1G12480; Note=Natural antisense transcript overlaps with AT1G12480; locus_type=antisense_long_noncoding_rna
AT1G12490.1	chr1:004260783	0.0	W/4260783-4260937,4260966-4261869	AT1G12490.1 CDS AT1G12490 ID=AT1G12490.1; Parent=AT1G12490; Name=AT1G12490.1; Note=F-box associated ubiquitination effector family protein; conf_class=8; computational_description=F-box associated ubiquitination effector family protein%3B CONTAINS InterPro DOMAIN/s: F-box associated domain%2C type 1 (InterPro:IPR006527)%2C F-box associated interaction domain (InterPro:IPR017451)%3B BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT1G09650.1)%3B Has 239 Blast hits to 239 proteins in 16 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 237%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=*; Dbxref=PMID:18775970, locus:2034715; locus_type=protein_coding
AT1G04957.1	chr1:004261918	0.0	W/4261918-4262359	AT1G04957.1 lnc_RNA AT1G04957 ID=AT1G04957.1; Parent=AT1G04957; Name=AT1G04957.1; locus_type=long_noncoding_rna
AT1G12500.1	chr1:004263542	0.0	C/4263542-4263955,4264286-4264957	AT1G12500.1 CDS AT1G12500 ID=AT1G12500.1; Parent=AT1G12500; Name=AT1G12500.1; Note=Nucleotide-sugar transporter family protein; conf_class=2; computational_description=Nucleotide-sugar transporter family protein%3B FUNCTIONS IN: organic anion transmembrane transporter activity%3B LOCATED IN: membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6%2C transmembrane (InterPro:IPR000620)%2C Protein of unknown function DUF250 (InterPro:IPR004853)%3B BEST Arabidopsis thaliana protein match is: Nucleotide-sugar transporter family protein (TAIR:AT3G11320.1)%3B Has 2763 Blast hits to 2761 proteins in 260 species: Archae - 6%3B Bacteria - 37%3B Metazoa - 632%3B Fungi - 440%3B Plants - 1334%3B Viruses - 0%3B Other Eukaryotes - 314 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12644669, PMID:15456736, PMID:18650403, locus:2034730; locus_type=protein_coding
AT1G12510.1	chr1:004266988	0.0	C/4266988-4267061	AT1G12510.1 tRNA AT1G12510 ID=AT1G12510.1; Parent=AT1G12510; Note=tRNA-Val; computational_description=tRNA-Val (anticodon: AAC); Dbxref=PMID:8980477, PMID:23066098, PMID:8980477, locus:3691058; Name=AT1G12510.1; locus_type=pre_trna
AT1G12520.1	chr1:004267277	0.0	C/4267277-4267543,4267617-4267840,4268143-4268277,4268375-4268447,4268529-4268555,4268664-4268900	AT1G12520.1 CDS AT1G12520 ID=AT1G12520.1; Parent=AT1G12520; Name=AT1G12520.1; Note=copper chaperone for SOD1; curator_summary=Copper-zinc superoxide dismutase copper chaperone (delivers copper to the Cu-Zn superoxide dismutase). Localized to the chloroplast. Expressed in roots and shoots. Up-regulated in response to copper and senescence. The AtACC activates all three CuZnSOD activities located in three different subcellular compartments. Contains three domains%2C central%2C ATX-1 like and C-terminal. ATX-1 like domain essential for the copper chaperone function of AtCCS in planta.; conf_class=2; symbol=CCS; Alias=ATCCS, copper chaperone for SOD1; full_name=copper chaperone for SOD1; computational_description=copper chaperone for SOD1 (CCS)%3B FUNCTIONS IN: superoxide dismutase copper chaperone activity%2C superoxide dismutase activity%3B INVOLVED IN: cellular copper ion homeostasis%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Superoxide dismutase%2C copper/zinc binding (InterPro:IPR001424)%2C Heavy metal transport/detoxification protein (InterPro:IPR006121)%3B BEST Arabidopsis thaliana protein match is: copper/zinc superoxide dismutase 2 (TAIR:AT2G28190.1)%3B Has 3500 Blast hits to 3494 proteins in 885 species: Archae - 2%3B Bacteria - 672%3B Metazoa - 1229%3B Fungi - 394%3B Plants - 875%3B Viruses - 122%3B Other Eukaryotes - 206 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12196180, PMID:12535341, PMID:10946110, PMID:15848163, PMID:18684332, PMID:19941154, PMID:22186608, PMID:22476460, PMID:23480361, PMID:23299425, locus:2034740; locus_type=protein_coding
AT1G12520.2	chr1:004267277	0.0	C/4267277-4267543,4267617-4267840,4268143-4268277,4268375-4268438	AT1G12520.2 CDS AT1G12520 ID=AT1G12520.2; Parent=AT1G12520; Name=AT1G12520.2; Note=copper chaperone for SOD1; curator_summary=Copper-zinc superoxide dismutase copper chaperone (delivers copper to the Cu-Zn superoxide dismutase). Localized to the chloroplast. Expressed in roots and shoots. Up-regulated in response to copper and senescence. The AtACC activates all three CuZnSOD activities located in three different subcellular compartments. Contains three domains%2C central%2C ATX-1 like and C-terminal. ATX-1 like domain essential for the copper chaperone function of AtCCS in planta.; conf_class=2; symbol=CCS; Alias=ATCCS, copper chaperone for SOD1; full_name=copper chaperone for SOD1; computational_description=copper chaperone for SOD1 (CCS)%3B FUNCTIONS IN: superoxide dismutase copper chaperone activity%2C superoxide dismutase activity%3B INVOLVED IN: cellular copper ion homeostasis%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Superoxide dismutase%2C copper/zinc binding (InterPro:IPR001424)%2C Heavy metal transport/detoxification protein (InterPro:IPR006121)%3B BEST Arabidopsis thaliana protein match is: copper/zinc superoxide dismutase 2 (TAIR:AT2G28190.1)%3B Has 3500 Blast hits to 3494 proteins in 885 species: Archae - 2%3B Bacteria - 672%3B Metazoa - 1229%3B Fungi - 394%3B Plants - 875%3B Viruses - 122%3B Other Eukaryotes - 206 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12196180, PMID:12535341, PMID:10946110, PMID:15848163, PMID:18684332, PMID:19941154, PMID:22186608, PMID:22476460, PMID:23480361, PMID:23299425, locus:2034740; locus_type=protein_coding
AT1G12520.3	chr1:004267277	0.0	C/4267277-4267543,4267617-4267840,4268143-4268206	AT1G12520.3 CDS AT1G12520 ID=AT1G12520.3; Parent=AT1G12520; Name=AT1G12520.3; Note=copper chaperone for SOD1; curator_summary=Copper-zinc superoxide dismutase copper chaperone (delivers copper to the Cu-Zn superoxide dismutase). Localized to the chloroplast. Expressed in roots and shoots. Up-regulated in response to copper and senescence. The AtACC activates all three CuZnSOD activities located in three different subcellular compartments. Contains three domains%2C central%2C ATX-1 like and C-terminal. ATX-1 like domain essential for the copper chaperone function of AtCCS in planta.; conf_class=2; symbol=CCS; Alias=ATCCS, copper chaperone for SOD1; full_name=copper chaperone for SOD1; computational_description=copper chaperone for SOD1 (CCS)%3B FUNCTIONS IN: superoxide dismutase copper chaperone activity%2C superoxide dismutase activity%3B INVOLVED IN: cellular copper ion homeostasis%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Superoxide dismutase%2C copper/zinc binding (InterPro:IPR001424)%2C Heavy metal transport/detoxification protein (InterPro:IPR006121)%3B BEST Arabidopsis thaliana protein match is: copper/zinc superoxide dismutase 2 (TAIR:AT2G28190.1)%3B Has 3500 Blast hits to 3494 proteins in 885 species: Archae - 2%3B Bacteria - 672%3B Metazoa - 1229%3B Fungi - 394%3B Plants - 875%3B Viruses - 122%3B Other Eukaryotes - 206 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12196180, PMID:12535341, PMID:10946110, PMID:15848163, PMID:18684332, PMID:19941154, PMID:22186608, PMID:22476460, PMID:23480361, PMID:23299425, locus:2034740; locus_type=protein_coding
AT1G12530.1	chr1:004269122	0.0	C/4269122-4269476,4269573-4269688,4270661-4270771	AT1G12530.1 CDS AT1G12530 ID=AT1G12530.1; Parent=AT1G12530; Name=AT1G12530.1; Note=hypothetical protein; conf_class=2; Alias=MOS9, modifier of snc1 9; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56420.1)%3B Has 54 Blast hits to 53 proteins in 13 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 54%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:23690534, locus:2034755; locus_type=protein_coding
AT1G12540.1	chr1:004272960	0.0	W/4272960-4273280,4273410-4273778,4273897-4273980	AT1G12540.1 CDS AT1G12540 ID=AT1G12540.1; Parent=AT1G12540; Name=AT1G12540.1; Note=basic helix-loop-helix (bHLH) DNA-binding superfamily protein; conf_class=2; computational_description=basic helix-loop-helix (bHLH) DNA-binding superfamily protein%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: nucleus%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G62975.1)%3B Has 394 Blast hits to 394 proteins in 30 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 5%3B Fungi - 2%3B Plants - 387%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:12509522, PMID:12679534, PMID:12897250, locus:2034750; locus_type=protein_coding
AT1G12550.1	chr1:004274649	0.0	W/4274649-4275095,4275307-4275831	AT1G12550.1 CDS AT1G12550 ID=AT1G12550.1; Parent=AT1G12550; Name=AT1G12550.1; Note=D-isomer specific 2-hydroxyacid dehydrogenase family protein; curator_summary=Encodes a hydroxypyruvate reductase that reduces HP to glycerate and shows even more activity with glyoxylate%2C a more upstream intermediate of the photorespiratory cycle. It is likely targeted to the chloroplast where it could provide a compensatory bypass for the reduction of HP and glyoxylate within this compartment.; conf_class=1; symbol=HPR3; full_name=hydroxypyruvate reductase 3; computational_description=D-isomer specific 2-hydroxyacid dehydrogenase family protein%3B FUNCTIONS IN: in 6 functions%3B INVOLVED IN: metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: D-isomer specific 2-hydroxyacid dehydrogenase%2C catalytic domain (InterPro:IPR006139)%2C D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD-binding (InterPro:IPR006140)%2C NAD(P)-binding domain (InterPro:IPR016040)%3B BEST Arabidopsis thaliana protein match is: D-isomer specific 2-hydroxyacid dehydrogenase family protein (TAIR:AT2G45630.2)%3B Has 29393 Blast hits to 29385 proteins in 2729 species: Archae - 468%3B Bacteria - 18116%3B Metazoa - 729%3B Fungi - 1168%3B Plants - 597%3B Viruses - 5%3B Other Eukaryotes - 8310 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:18775970, PMID:18952776, PMID:21205613, locus:2034665; locus_type=protein_coding
AT1G12560.1	chr1:004276557	0.0	W/4276557-4276719,4276984-4277296,4277381-4277693	AT1G12560.1 CDS AT1G12560 ID=AT1G12560.1; Parent=AT1G12560; Name=AT1G12560.1; Note=expansin A7; curator_summary=Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al%2C 2004. Plant Mol Bio). Containing a conserved root hair-specific cis-element RHE. Expressed specifically in root hair cell and involved in root hair elongation.; conf_class=1; symbol=EXPA7; Alias=ATEXP7, ATEXPA7, expansin A7, ATHEXP ALPHA 1.26, EXP7; full_name=expansin A7; computational_description=expansin A7 (EXPA7)%3B INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth%2C unidimensional cell growth%2C plant-type cell wall loosening%3B LOCATED IN: endomembrane system%2C extracellular region%3B EXPRESSED IN: sperm cell%2C root hair%2C root%3B CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009)%2C Pollen allergen%2C N-terminal (InterPro:IPR014734)%2C Expansin (InterPro:IPR002963)%2C Rare lipoprotein A (InterPro:IPR005132)%2C Expansin/Lol pI (InterPro:IPR007118)%2C Expansin 45%2C endoglucanase-like (InterPro:IPR007112)%2C Pollen allergen/expansin%2C C-terminal (InterPro:IPR007117)%3B BEST Arabidopsis thaliana protein match is: expansin A18 (TAIR:AT1G62980.1)%3B Has 2192 Blast hits to 2189 proteins in 166 species: Archae - 0%3B Bacteria - 20%3B Metazoa - 0%3B Fungi - 53%3B Plants - 2083%3B Viruses - 0%3B Other Eukaryotes - 36 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:8757932, PMID:11641069, PMID:11891242, PMID:12468740, PMID:15371352, PMID:17098810, PMID:18485206, PMID:19704754, PMID:20736450, PMID:21309868, PMID:21359675, PMID:22253603, locus:2034680; locus_type=protein_coding
AT1G12570.1	chr1:004278192	0.0	C/4278192-4278237,4278312-4279260,4279557-4279858,4280255-4280594,4280672-4280753	AT1G12570.1 CDS AT1G12570 ID=AT1G12570.1; Parent=AT1G12570; Name=AT1G12570.1; Note=Glucose-methanol-choline (GMC) oxidoreductase family protein; conf_class=2; computational_description=Glucose-methanol-choline (GMC) oxidoreductase family protein%3B FUNCTIONS IN: aldehyde-lyase activity%2C oxidoreductase activity%2C acting on CH-OH group of donors%2C FAD binding%3B INVOLVED IN: alcohol metabolic process%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: Glucose-methanol-choline oxidoreductase%2C N-terminal (InterPro:IPR000172)%2C Glucose-methanol-choline oxidoreductase (InterPro:IPR012132)%2C Glucose-methanol-choline oxidoreductase%2C C-terminal (InterPro:IPR007867)%3B BEST Arabidopsis thaliana protein match is: Glucose-methanol-choline (GMC) oxidoreductase family protein (TAIR:AT5G51950.1)%3B Has 10555 Blast hits to 10382 proteins in 1112 species: Archae - 4%3B Bacteria - 3926%3B Metazoa - 806%3B Fungi - 1507%3B Plants - 299%3B Viruses - 12%3B Other Eukaryotes - 4001 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17449808, PMID:18441227, PMID:20736450, locus:2034705; locus_type=protein_coding
AT1G12580.1	chr1:004283635	0.0	W/4283635-4284229,4284318-4284614,4284781-4285167,4285386-4285675	AT1G12580.1 CDS AT1G12580 ID=AT1G12580.1; Parent=AT1G12580; Name=AT1G12580.1; Note=phosphoenolpyruvate carboxylase-related kinase 1; conf_class=1; symbol=PEPKR1; full_name=phosphoenolpyruvate carboxylase-related kinase 1; computational_description=phosphoenolpyruvate carboxylase-related kinase 1 (PEPKR1)%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Calcium-dependent protein kinase (InterPro:IPR020642)%2C Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase 34 (TAIR:AT5G19360.1)%3B Has 122716 Blast hits to 120722 proteins in 3168 species: Archae - 154%3B Bacteria - 14954%3B Metazoa - 44101%3B Fungi - 12932%3B Plants - 28847%3B Viruses - 523%3B Other Eukaryotes - 21205 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12805596, PMID:14535885, PMID:21477822, locus:2034720; locus_type=protein_coding
AT1G12590.1	chr1:004285887	0.0	C/4285887-4285958	AT1G12590.1 tRNA AT1G12590 ID=AT1G12590.1; Parent=AT1G12590; Note=tRNA-Gly; computational_description=tRNA-Gly (anticodon: TCC); Dbxref=PMID:8980477, PMID:23066098, PMID:8980477, locus:3691061; Name=AT1G12590.1; locus_type=pre_trna
AT1G12600.1	chr1:004286414	0.0	C/4286414-4286647,4286808-4286915,4287137-4287238,4287323-4287565,4287972-4288173,4288252-4288280,4288728-4288859	AT1G12600.1 CDS AT1G12600 ID=AT1G12600.1; Parent=AT1G12600; Name=AT1G12600.1; Note=UDP-N-acetylglucosamine (UAA) transporter family; conf_class=1; computational_description=UDP-N-acetylglucosamine (UAA) transporter family%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: transmembrane transport%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: petal%2C leaf whorl%2C male gametophyte%2C flower%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: UAA transporter (InterPro:IPR013657)%3B BEST Arabidopsis thaliana protein match is: UDP-galactose transporter 2 (TAIR:AT4G23010.1)%3B Has 1283 Blast hits to 1283 proteins in 272 species: Archae - 2%3B Bacteria - 86%3B Metazoa - 575%3B Fungi - 206%3B Plants - 224%3B Viruses - 0%3B Other Eukaryotes - 190 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15456736, PMID:16607029, PMID:18775970, locus:2195032; locus_type=protein_coding
AT1G04963.1	chr1:004289280	0.0	W/4289280-4289536	AT1G04963.1 lnc_RNA AT1G04963 ID=AT1G04963.1; Parent=AT1G04963; Name=AT1G04963.1; locus_type=long_noncoding_rna
AT1G12610.1	chr1:004290205	0.0	C/4290205-4290834	AT1G12610.1 CDS AT1G12610 ID=AT1G12610.1; Parent=AT1G12610; Name=AT1G12610.1; Note=Integrase-type DNA-binding superfamily protein; curator_summary=Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (DDF1). The protein contains one AP2 domain. There are six members in this subfamily%2C including CBF1%2C CBF2%2C and CBF3. Overexpression of this gene results in delayed flowering and dwarfism%2C reduction of gibberellic acid biosynthesis%2C and increased tolerance to high levels of salt. This gene is expressed in all tissues examined%2C but most abundantly expressed in upper stems. Overexpression of this gene is also correlated with increased expression of GA biosynthetic genes and RD29A (a cold and drought responsive gene). Under salt stress it induces the expression of GAOX7%2C which encodes ad C20-GA inhibitor.; conf_class=1; symbol=DDF1; full_name=DWARF AND DELAYED FLOWERING 1; computational_description=DWARF AND DELAYED FLOWERING 1 (DDF1)%3B CONTAINS InterPro DOMAIN/s: DNA-binding%2C integrase-type (InterPro:IPR016177)%2C Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (InterPro:IPR001471)%3B BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G63030.2)%3B Has 5207 Blast hits to 5205 proteins in 224 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 5202%3B Viruses - 0%3B Other Eukaryotes - 5 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11118137, PMID:12376631, PMID:14871311, PMID:16244138, PMID:16614820, PMID:16792696, PMID:17217462, PMID:17521445, PMID:18252252, PMID:18467468, PMID:18643985, PMID:18684332, PMID:18829981, PMID:20736450, PMID:21421412, PMID:22037706, PMID:22013217, PMID:22995285, PMID:24614501, locus:2195052; locus_type=protein_coding
AT1TE13960	chr1:004292790	0.0	C/4292790-4293327	AT1TE13960 transposable_element AT1TE13960 ID=AT1TE13960; Name=AT1TE13960; Alias=HELITRONY3
AT1TE13965	chr1:004293328	0.0	W/4293328-4294088	AT1TE13965 transposable_element AT1TE13965 ID=AT1TE13965; Name=AT1TE13965; Alias=HELITRONY1B
AT1G12615.1	chr1:004294055	0.0	C/4294055-4294540	AT1G12615.1 CDS AT1G12615 ID=AT1G12615.1; Parent=AT1G12615; Name=AT1G12615.1; Note=pentatricopeptide (PPR) repeat protein; locus_type=protein_coding
AT1TE13970	chr1:004294089	0.0	W/4294089-4294188	AT1TE13970 transposable_element AT1TE13970 ID=AT1TE13970; Name=AT1TE13970; Alias=HELITRONY1E
AT1G12620.1	chr1:004294883	0.0	C/4294883-4296748	AT1G12620.1 CDS AT1G12620 ID=AT1G12620.1; Parent=AT1G12620; Name=AT1G12620.1; Note=Pentatricopeptide repeat (PPR) superfamily protein; conf_class=1; computational_description=Pentatricopeptide repeat (PPR) superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G12300.1)%3B Has 65829 Blast hits to 15121 proteins in 316 species: Archae - 4%3B Bacteria - 59%3B Metazoa - 1157%3B Fungi - 1233%3B Plants - 61014%3B Viruses - 0%3B Other Eukaryotes - 2362 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15565108, PMID:17400893, PMID:17521445, locus:2195047; locus_type=protein_coding
AT1TE13980	chr1:004297983	0.0	W/4297983-4298477	AT1TE13980 transposable_element AT1TE13980 ID=AT1TE13980; Name=AT1TE13980; Alias=BRODYAGA2
AT1G12630.1	chr1:004298897	0.0	W/4298897-4299475	AT1G12630.1 CDS AT1G12630 ID=AT1G12630.1; Parent=AT1G12630; Name=AT1G12630.1; Note=Integrase-type DNA-binding superfamily protein; curator_summary=encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.; conf_class=1; computational_description=Integrase-type DNA-binding superfamily protein%3B FUNCTIONS IN: DNA binding%2C transcription activator activity%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B LOCATED IN: nucleus%3B CONTAINS InterPro DOMAIN/s: DNA-binding%2C integrase-type (InterPro:IPR016177)%2C Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (InterPro:IPR001471)%3B BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G52020.1)%3B Has 5560 Blast hits to 5541 proteins in 245 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 1%3B Plants - 5552%3B Viruses - 0%3B Other Eukaryotes - 7 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11118137, PMID:17521445, locus:2195062; locus_type=protein_coding
AT1G12640.1	chr1:004303586	0.0	C/4303586-4303723,4303812-4303930,4304014-4304077,4304188-4304273,4304360-4304768,4304870-4305090,4305210-4305265,4305371-4305666	AT1G12640.1 CDS AT1G12640 ID=AT1G12640.1; Parent=AT1G12640; Name=AT1G12640.1; Note=MBOAT (membrane bound O-acyl transferase) family protein; curator_summary=Encodes a lysophosphatidylcholine acyltransferase (LPCAT). Participates in the Lands cycle in developing seeds.; conf_class=2; symbol=LPLAT1; Alias=AtLPLAT1, LPCAT1, lysophosphatidylcholine acyltransferase 1; full_name=lysophospholipid acyltransferase 1; computational_description=MBOAT (membrane bound O-acyl transferase) family protein%3B FUNCTIONS IN: acyltransferase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%2C membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Membrane bound O-acyl transferase%2C MBOAT (InterPro:IPR004299)%3B BEST Arabidopsis thaliana protein match is: MBOAT (membrane bound O-acyl transferase) family protein (TAIR:AT1G63050.1)%3B Has 1204 Blast hits to 1199 proteins in 313 species: Archae - 0%3B Bacteria - 269%3B Metazoa - 625%3B Fungi - 142%3B Plants - 47%3B Viruses - 0%3B Other Eukaryotes - 121 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17521445, PMID:18154737, PMID:18775970, PMID:20736450, PMID:22233193, PMID:22212851, PMID:22932756, PMID:23150634, PMID:23505340, PMID:24189065, PMID:25268378, locus:2195072; locus_type=protein_coding
AT1G12650.1	chr1:004306183	0.0	W/4306183-4306287,4306369-4306496,4306597-4306663,4306764-4306816,4306908-4306962,4307047-4307121,4307214-4307334,4307446-4307492,4307578-4307673	AT1G12650.1 CDS AT1G12650 ID=AT1G12650.1; Parent=AT1G12650; Name=AT1G12650.1; Note=rRNA biogenesis RRP36-like protein; conf_class=2; computational_description=unknown protein%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF947 (InterPro:IPR009292)%3B Has 700 Blast hits to 631 proteins in 192 species: Archae - 0%3B Bacteria - 32%3B Metazoa - 138%3B Fungi - 168%3B Plants - 60%3B Viruses - 0%3B Other Eukaryotes - 302 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15489280, PMID:16461884, locus:2195082; locus_type=protein_coding
AT1G12650.2	chr1:004306183	0.0	W/4306183-4306287,4306369-4306496,4306597-4306663,4306764-4306816,4306908-4306962,4307047-4307121,4307214-4307334,4307446-4307492,4307578-4307673	AT1G12650.2 CDS AT1G12650 ID=AT1G12650.2; Parent=AT1G12650; Name=AT1G12650.2; Note=rRNA biogenesis RRP36-like protein; conf_class=2; computational_description=unknown protein%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF947 (InterPro:IPR009292)%3B Has 700 Blast hits to 631 proteins in 192 species: Archae - 0%3B Bacteria - 32%3B Metazoa - 138%3B Fungi - 168%3B Plants - 60%3B Viruses - 0%3B Other Eukaryotes - 302 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15489280, PMID:16461884, locus:2195082; locus_type=protein_coding
AT1G12650.3	chr1:004306183	0.0	W/4306183-4306287,4306369-4306496,4306597-4306663,4306764-4306816,4306908-4306962,4307047-4307121,4307214-4307334,4307446-4307492,4307578-4307673	AT1G12650.3 CDS AT1G12650 ID=AT1G12650.3; Parent=AT1G12650; Name=AT1G12650.3; Note=rRNA biogenesis RRP36-like protein; conf_class=2; computational_description=unknown protein%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF947 (InterPro:IPR009292)%3B Has 700 Blast hits to 631 proteins in 192 species: Archae - 0%3B Bacteria - 32%3B Metazoa - 138%3B Fungi - 168%3B Plants - 60%3B Viruses - 0%3B Other Eukaryotes - 302 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15489280, PMID:16461884, locus:2195082; locus_type=protein_coding
AT1G12650.4	chr1:004306183	0.0	W/4306183-4306287,4306369-4306496,4306597-4306663,4306764-4306816,4306908-4306962,4307047-4307121,4307214-4307334,4307446-4307492,4307578-4307673	AT1G12650.4 CDS AT1G12650 ID=AT1G12650.4; Parent=AT1G12650; Name=AT1G12650.4; Note=rRNA biogenesis RRP36-like protein; conf_class=2; computational_description=unknown protein%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF947 (InterPro:IPR009292)%3B Has 700 Blast hits to 631 proteins in 192 species: Archae - 0%3B Bacteria - 32%3B Metazoa - 138%3B Fungi - 168%3B Plants - 60%3B Viruses - 0%3B Other Eukaryotes - 302 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15489280, PMID:16461884, locus:2195082; locus_type=protein_coding
AT1G12660.1	chr1:004308943	0.0	W/4308943-4309243,4309494-4309558	AT1G12660.1 CDS AT1G12660 ID=AT1G12660.1; Parent=AT1G12660; Name=AT1G12660.1; Note=thionin-like protein; curator_summary=Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100%2C At5g36910%2C At1g72260%2C At2g15010%2C At1g12663%2C At1g12660.; conf_class=4; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: defense response%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: central cell%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12663.1)%3B Has 37 Blast hits to 36 proteins in 6 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 37%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:18674922, PMID:20226671, locus:2195088; locus_type=protein_coding
AT1G12663.1	chr1:004310969	0.0	W/4310969-4311254,4311396-4311457	AT1G12663.1 CDS AT1G12663 ID=AT1G12663.1; Parent=AT1G12663; Name=AT1G12663.1; Note=thionin-like protein; curator_summary=Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100%2C At5g36910%2C At1g72260%2C At2g15010%2C At1g12663%2C At1g12660.; conf_class=7; computational_description=INVOLVED IN: defense response%3B LOCATED IN: endomembrane system%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12672.2)%3B Has 42 Blast hits to 41 proteins in 8 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 42%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:18674922, locus:4010713437; locus_type=protein_coding
AT1TE14020	chr1:004311538	0.0	W/4311538-4311639	AT1TE14020 transposable_element AT1TE14020 ID=AT1TE14020; Name=AT1TE14020; Alias=ATREP11
AT1TE14025	chr1:004311640	0.0	C/4311640-4312374	AT1TE14025 transposable_element AT1TE14025 ID=AT1TE14025; Name=AT1TE14025; Alias=HELITRONY3
AT1G12665.1	chr1:004312398	0.0	W/4312398-4312667	AT1G12665.1 CDS AT1G12665 ID=AT1G12665.1; Parent=AT1G12665; Name=AT1G12665.1; Note=thionin-like protein; curator_summary=Encodes a Plant thionin family protein; conf_class=1; computational_description=LOCATED IN: endomembrane system%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12663.1)%3B Has 1554 Blast hits to 382 proteins in 88 species: Archae - 6%3B Bacteria - 293%3B Metazoa - 49%3B Fungi - 201%3B Plants - 321%3B Viruses - 145%3B Other Eukaryotes - 539 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:4010713438; locus_type=protein_coding
AT1G12667.1	chr1:004313858	0.0	W/4313858-4314204	AT1G12667.1 pseudogenic_transcript AT1G12667 ID=AT1G12667.1; Parent=AT1G12667; Name=AT1G12667.1; index=1; Note=pseudogene; curator_summary=Encodes a Plant thionin family protein; Dbxref=locus:4010713439, locus:4010713439; locus_type=pseudogene; computational_description=pseudogene of thionin-like protein
AT1G12669.1	chr1:004315466	0.0	W/4315466-4315987	AT1G12669.1 pseudogenic_transcript AT1G12669 ID=AT1G12669.1; Parent=AT1G12669; Name=AT1G12669.1; index=1; Note=pseudogene; curator_summary=Encodes a Plant thionin family protein [pseudogene]; Dbxref=locus:4010713440, locus:4010713440; locus_type=pseudogene; computational_description=pseudogene of thionin-like protein
AT1G12670.1	chr1:004316607	0.0	W/4316607-4317120	AT1G12670.1 pseudogenic_transcript AT1G12670 ID=AT1G12670.1; Parent=AT1G12670; Name=AT1G12670.1; curator_summary=Encodes a Plant thionin family protein [pseudogene]; Note=pseudogene; Dbxref=PMID:20032078, PMID:20032078, locus:2195022; computational_description=pseudogene of thionin-like protein; locus_type=pseudogene
AT1G12672.2	chr1:004318375	0.0	W/4318375-4318489,4318555-4318692,4318810-4318871	AT1G12672.2 CDS AT1G12672 ID=AT1G12672.2; Parent=AT1G12672; Name=AT1G12672.2; Note=thionin-like protein; conf_class=3; computational_description=unknown protein%3B LOCATED IN: endomembrane system%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12663.1)%3B Has 4 Blast hits to 4 proteins in 1 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 4%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:20032078, locus:4010713441; locus_type=protein_coding
AT1G12672.1	chr1:004318596	0.0	W/4318596-4318692,4318810-4318871	AT1G12672.1 CDS AT1G12672 ID=AT1G12672.1; Parent=AT1G12672; Name=AT1G12672.1; Note=thionin-like protein; conf_class=3; computational_description=unknown protein%3B LOCATED IN: endomembrane system%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12663.1)%3B Has 4 Blast hits to 4 proteins in 1 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 4%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:20032078, locus:4010713441; locus_type=protein_coding
AT1G12680.1	chr1:004320123	0.0	C/4320123-4320484,4320623-4320919,4321516-4322269	AT1G12680.1 CDS AT1G12680 ID=AT1G12680.1; Parent=AT1G12680; Name=AT1G12680.1; Note=phosphoenolpyruvate carboxylase-related kinase 2; conf_class=2; symbol=PEPKR2; full_name=phosphoenolpyruvate carboxylase-related kinase 2; computational_description=phosphoenolpyruvate carboxylase-related kinase 2 (PEPKR2)%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Calcium-dependent protein kinase (InterPro:IPR020642)%2C Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase 29 (TAIR:AT1G76040.2)%3B Has 127165 Blast hits to 125151 proteins in 3799 species: Archae - 184%3B Bacteria - 15080%3B Metazoa - 45775%3B Fungi - 13042%3B Plants - 31031%3B Viruses - 550%3B Other Eukaryotes - 21503 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12805596, PMID:15010618, PMID:17360592, PMID:18775970, PMID:21477822, locus:2195037; locus_type=protein_coding
AT1G12700.1	chr1:004324419	0.0	C/4324419-4326227	AT1G12700.1 CDS AT1G12700 ID=AT1G12700.1; Parent=AT1G12700; Name=AT1G12700.1; Note=RNA processing FACTOR; curator_summary=Encodes RNA PROCESSING FACTOR 1 (RPF1)%2C a pentatricopeptide repeat (PPR) protein of the P-class containing canonical PPR-repeats. RPF1 is required for the 5%E2%80%99-end processing of the nad4 mRNA in mitochondria. Ler and other accessions impaired in processing of the nad4 mRNA 5%26#8242%3B-end%2C contain a single nucleotide polymorphism (SNP) 807 nucleotides downstream of the predicted translation start codon (G807A). The resulting premature translation termination codon abolishes the function of the RPF1 gene in Ler.; conf_class=6; symbol=RPF1; full_name=RNA processing factor 1; computational_description=ATP binding%3Bnucleic acid binding%3Bhelicases%3B FUNCTIONS IN: helicase activity%2C nucleic acid binding%2C ATP binding%3B INVOLVED IN: biological_process unknown%3B EXPRESSED IN: embryo%3B EXPRESSED DURING: D bilateral stage%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%2C DNA/RNA helicase%2C C-terminal (InterPro:IPR001650)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G12300.1)%3B Has 84744 Blast hits to 32036 proteins in 2584 species: Archae - 123%3B Bacteria - 11324%3B Metazoa - 2691%3B Fungi - 2451%3B Plants - 63733%3B Viruses - 4%3B Other Eukaryotes - 4418 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:17400893, PMID:17521445, PMID:21251101, locus:2195103; locus_type=protein_coding
AT1G12700.2	chr1:004324419	0.0	C/4324419-4326275	AT1G12700.2 CDS AT1G12700 ID=AT1G12700.2; Parent=AT1G12700; Name=AT1G12700.2; Note=RNA processing FACTOR; symbol=RPF1; full_name=RNA processing factor 1; curator_summary=Encodes RNA PROCESSING FACTOR 1 (RPF1)%2C a pentatricopeptide repeat (PPR) protein of the P-class containing canonical PPR-repeats. RPF1 is required for the 5%E2%80%99-end processing of the nad4 mRNA in mitochondria. Ler and other accessions impaired in processing of the nad4 mRNA 5%26#8242%3B-end%2C contain a single nucleotide polymorphism (SNP) 807 nucleotides downstream of the predicted translation start codon (G807A). The resulting premature translation termination codon abolishes the function of the RPF1 gene in Ler.; computational_description=ATP binding%3Bnucleic acid binding%3Bhelicases%3B FUNCTIONS IN: helicase activity%2C nucleic acid binding%2C ATP binding%3B INVOLVED IN: biological_process unknown%3B EXPRESSED IN: embryo%3B EXPRESSED DURING: D bilateral stage%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%2C DNA/RNA helicase%2C C-terminal (InterPro:IPR001650)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G12300.1)%3B Has 84744 Blast hits to 32036 proteins in 2584 species: Archae - 123%3B Bacteria - 11324%3B Metazoa - 2691%3B Fungi - 2451%3B Plants - 63733%3B Viruses - 4%3B Other Eukaryotes - 4418 (source: NCBI BLink).; Dbxref=PMID:17400893, PMID:17521445, PMID:21251101, locus:2195103; locus_type=protein_coding
AT1G12700.3	chr1:004324419	0.0	C/4324419-4326275	AT1G12700.3 CDS AT1G12700 ID=AT1G12700.3; Parent=AT1G12700; Name=AT1G12700.3; Note=RNA processing FACTOR; symbol=RPF1; full_name=RNA processing factor 1; curator_summary=Encodes RNA PROCESSING FACTOR 1 (RPF1)%2C a pentatricopeptide repeat (PPR) protein of the P-class containing canonical PPR-repeats. RPF1 is required for the 5%E2%80%99-end processing of the nad4 mRNA in mitochondria. Ler and other accessions impaired in processing of the nad4 mRNA 5%26#8242%3B-end%2C contain a single nucleotide polymorphism (SNP) 807 nucleotides downstream of the predicted translation start codon (G807A). The resulting premature translation termination codon abolishes the function of the RPF1 gene in Ler.; computational_description=ATP binding%3Bnucleic acid binding%3Bhelicases%3B FUNCTIONS IN: helicase activity%2C nucleic acid binding%2C ATP binding%3B INVOLVED IN: biological_process unknown%3B EXPRESSED IN: embryo%3B EXPRESSED DURING: D bilateral stage%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%2C DNA/RNA helicase%2C C-terminal (InterPro:IPR001650)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G12300.1)%3B Has 84744 Blast hits to 32036 proteins in 2584 species: Archae - 123%3B Bacteria - 11324%3B Metazoa - 2691%3B Fungi - 2451%3B Plants - 63733%3B Viruses - 4%3B Other Eukaryotes - 4418 (source: NCBI BLink).; Dbxref=PMID:17400893, PMID:17521445, PMID:21251101, locus:2195103; locus_type=protein_coding
AT1G12710.1	chr1:004326980	0.0	C/4326980-4327403,4327741-4327859,4327992-4328324	AT1G12710.1 CDS AT1G12710 ID=AT1G12710.1; Parent=AT1G12710; Name=AT1G12710.1; Note=phloem protein 2-A12; curator_summary=This gene is predicted to encode a protein with a PP2 domain. This domain in present in lectins found in squash and cucumber%2C suggesting that this protein could potentially have carbohydrate binding capabilities.; conf_class=2; symbol=PP2-A12; Alias=AtPP2-A12, phloem protein 2-A12; full_name=phloem protein 2-A12; computational_description=phloem protein 2-A12 (PP2-A12)%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%3B BEST Arabidopsis thaliana protein match is: phloem protein 2-A11 (TAIR:AT1G63090.1)%3B Has 458 Blast hits to 452 proteins in 24 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 2%3B Plants - 456%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12529520, PMID:17521445, PMID:20736450, locus:2195042; locus_type=protein_coding
AT1G12710.2	chr1:004326980	0.0	C/4326980-4327529,4327741-4327859,4327992-4328324	AT1G12710.2 CDS AT1G12710 ID=AT1G12710.2; Parent=AT1G12710; Name=AT1G12710.2; Note=phloem protein 2-A12; symbol=PP2-A12; Alias=AtPP2-A12, phloem protein 2-A12; full_name=phloem protein 2-A12; curator_summary=This gene is predicted to encode a protein with a PP2 domain. This domain in present in lectins found in squash and cucumber%2C suggesting that this protein could potentially have carbohydrate binding capabilities.; computational_description=phloem protein 2-A12 (PP2-A12)%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%3B BEST Arabidopsis thaliana protein match is: phloem protein 2-A11 (TAIR:AT1G63090.1)%3B Has 458 Blast hits to 452 proteins in 24 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 2%3B Plants - 456%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=PMID:12529520, PMID:17521445, PMID:20736450, locus:2195042; locus_type=protein_coding
AT1TE14080	chr1:004329224	0.0	W/4329224-4329320	AT1TE14080 transposable_element AT1TE14080 ID=AT1TE14080; Name=AT1TE14080; Alias=ATHATN3
AT1TE14085	chr1:004329877	0.0	W/4329877-4334393	AT1TE14085 transposable_element AT1TE14085 ID=AT1TE14085; Name=AT1TE14085; Alias=ATMU4
AT1G12720.1	chr1:004331062	0.0	W/4331062-4333220	AT1G12720.1 CDS AT1G12720 ID=AT1G12720.1; Parent=AT1G12720; Name=AT1G12720.1; index=1; computational_description=Mutator-like transposase family%2C has a 1.2e-40 P-value blast match to GB:AAA21566 mudrA of transposon%3DMuDR (MuDr-element) (Zea mays); Dbxref=PMID:15987878, locus:2195057; Note=transposable_element_gene; locus_type=transposable_element_gene
AT1G12725.1	chr1:004333383	0.0	C/4333383-4334033	AT1G12725.1 CDS AT1G12725 ID=AT1G12725.1; Parent=AT1G12725; Name=AT1G12725.1; index=1; computational_description=similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G28570.1)%3B similar to GRF zinc finger containing protein [Brassica oleracea] (GB:ABD64950.1); Dbxref=locus:504956174; Note=transposable_element_gene; locus_type=transposable_element_gene
AT1G12730.1	chr1:004334675	0.0	W/4334675-4334846,4334954-4335001,4335097-4335157,4335261-4335293,4335438-4335562,4335759-4335893,4336012-4336088,4336180-4336436,4336578-4336634,4336722-4336893,4336999-4337056,4337149-4337234,4337317-4337373,4337523-4337609	AT1G12730.1 CDS AT1G12730 ID=AT1G12730.1; Parent=AT1G12730; Name=AT1G12730.1; Note=GPI transamidase subunit PIG-U; conf_class=2; computational_description=GPI transamidase subunit PIG-U%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: GPI anchor biosynthetic process%3B LOCATED IN: integral to membrane%2C endoplasmic reticulum membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: GPI transamidase subunit PIG-U (InterPro:IPR009600)%3B BEST Arabidopsis thaliana protein match is: GPI transamidase subunit PIG-U (TAIR:AT1G63110.1)%3B Has 339 Blast hits to 333 proteins in 155 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 135%3B Fungi - 121%3B Plants - 55%3B Viruses - 0%3B Other Eukaryotes - 28 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17521445, PMID:21815983, locus:2195093; locus_type=protein_coding
AT1G12730.2	chr1:004335109	0.0	W/4335109-4335157,4335261-4335293,4335458-4335562,4335759-4335893,4336012-4336088,4336180-4336436,4336578-4336634,4336722-4336893,4336999-4337056,4337149-4337234,4337317-4337373,4337523-4337609	AT1G12730.2 CDS AT1G12730 ID=AT1G12730.2; Parent=AT1G12730; Name=AT1G12730.2; Note=GPI transamidase subunit PIG-U; conf_class=3; computational_description=GPI transamidase subunit PIG-U%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: GPI anchor biosynthetic process%3B LOCATED IN: integral to membrane%2C endoplasmic reticulum membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: GPI transamidase subunit PIG-U (InterPro:IPR009600)%3B BEST Arabidopsis thaliana protein match is: GPI transamidase subunit PIG-U (TAIR:AT1G63110.1)%3B Has 339 Blast hits to 333 proteins in 155 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 135%3B Fungi - 121%3B Plants - 55%3B Viruses - 0%3B Other Eukaryotes - 28 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17521445, PMID:21815983, locus:2195093; locus_type=protein_coding
AT1G04967.1	chr1:004338942	0.0	C/4338942-4339323	AT1G04967.1 lnc_RNA AT1G04967 ID=AT1G04967.1; Parent=AT1G04967; Name=AT1G04967.1; locus_type=long_noncoding_rna
AT1G12740.1	chr1:004342462	0.0	W/4342462-4342658,4342741-4343062,4343149-4343298,4343369-4343620,4343708-4343797,4343891-4343969,4344065-4344171,4344257-4344384,4344476-4344569	AT1G12740.1 CDS AT1G12740 ID=AT1G12740.1; Parent=AT1G12740; Name=AT1G12740.1; Note=cytochrome P450%2C family 87%2C subfamily A%2C polypeptide 2; curator_summary=encodes a protein with cytochrome P450 domain; conf_class=2; symbol=CYP87A2; full_name=cytochrome P450%2C family 87%2C subfamily A%2C polypeptide 2; computational_description=cytochrome P450%2C family 87%2C subfamily A%2C polypeptide 2 (CYP87A2)%3B FUNCTIONS IN: electron carrier activity%2C monooxygenase activity%2C iron ion binding%2C oxygen binding%2C heme binding%3B INVOLVED IN: oxidation reduction%3B EXPRESSED IN: root%3B CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128)%2C Cytochrome P450%2C conserved site (InterPro:IPR017972)%2C Cytochrome P450%2C E-class%2C group I (InterPro:IPR002401)%3B BEST Arabidopsis thaliana protein match is: cytochrome P450%2C family 708%2C subfamily A%2C polypeptide 3 (TAIR:AT1G78490.1)%3B Has 31076 Blast hits to 30988 proteins in 1655 species: Archae - 56%3B Bacteria - 5533%3B Metazoa - 10873%3B Fungi - 5392%3B Plants - 7791%3B Viruses - 3%3B Other Eukaryotes - 1428 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16489130, PMID:17061125, locus:2195098; locus_type=protein_coding
AT1G12740.2	chr1:004342462	0.0	W/4342462-4342658,4342723-4343062,4343149-4343298,4343369-4343620,4343708-4343797,4343891-4343969,4344065-4344171,4344257-4344384,4344476-4344569	AT1G12740.2 CDS AT1G12740 ID=AT1G12740.2; Parent=AT1G12740; Name=AT1G12740.2; Note=cytochrome P450%2C family 87%2C subfamily A%2C polypeptide 2; curator_summary=encodes a protein with cytochrome P450 domain; conf_class=3; symbol=CYP87A2; full_name=cytochrome P450%2C family 87%2C subfamily A%2C polypeptide 2; computational_description=cytochrome P450%2C family 87%2C subfamily A%2C polypeptide 2 (CYP87A2)%3B FUNCTIONS IN: electron carrier activity%2C monooxygenase activity%2C iron ion binding%2C oxygen binding%2C heme binding%3B INVOLVED IN: oxidation reduction%3B EXPRESSED IN: root%3B CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128)%2C Cytochrome P450%2C conserved site (InterPro:IPR017972)%2C Cytochrome P450%2C E-class%2C group I (InterPro:IPR002401)%3B BEST Arabidopsis thaliana protein match is: cytochrome P450%2C family 708%2C subfamily A%2C polypeptide 3 (TAIR:AT1G78490.1)%3B Has 31076 Blast hits to 30988 proteins in 1655 species: Archae - 56%3B Bacteria - 5533%3B Metazoa - 10873%3B Fungi - 5392%3B Plants - 7791%3B Viruses - 3%3B Other Eukaryotes - 1428 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16489130, PMID:17061125, locus:2195098; locus_type=protein_coding
AT1G12740.3	chr1:004342462	0.0	W/4342462-4342658,4342741-4343062,4343149-4343298,4343369-4343620,4343708-4343797,4343891-4343980	AT1G12740.3 CDS AT1G12740 ID=AT1G12740.3; Parent=AT1G12740; Name=AT1G12740.3; Note=cytochrome P450%2C family 87%2C subfamily A%2C polypeptide 2; symbol=CYP87A2; full_name=cytochrome P450%2C family 87%2C subfamily A%2C polypeptide 2; curator_summary=encodes a protein with cytochrome P450 domain; computational_description=cytochrome P450%2C family 87%2C subfamily A%2C polypeptide 2 (CYP87A2)%3B FUNCTIONS IN: electron carrier activity%2C monooxygenase activity%2C iron ion binding%2C oxygen binding%2C heme binding%3B INVOLVED IN: oxidation reduction%3B EXPRESSED IN: root%3B CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128)%2C Cytochrome P450%2C conserved site (InterPro:IPR017972)%2C Cytochrome P450%2C E-class%2C group I (InterPro:IPR002401)%3B BEST Arabidopsis thaliana protein match is: cytochrome P450%2C family 708%2C subfamily A%2C polypeptide 3 (TAIR:AT1G78490.1)%3B Has 31076 Blast hits to 30988 proteins in 1655 species: Archae - 56%3B Bacteria - 5533%3B Metazoa - 10873%3B Fungi - 5392%3B Plants - 7791%3B Viruses - 3%3B Other Eukaryotes - 1428 (source: NCBI BLink).; Dbxref=PMID:16489130, PMID:17061125, locus:2195098; locus_type=protein_coding
AT1G12740.4	chr1:004342462	0.0	W/4342462-4342658,4342741-4343062,4343149-4343298,4343369-4343620,4343708-4343797,4343891-4343969,4344047-4344171,4344257-4344384,4344476-4344569	AT1G12740.4 CDS AT1G12740 ID=AT1G12740.4; Parent=AT1G12740; Name=AT1G12740.4; Note=cytochrome P450%2C family 87%2C subfamily A%2C polypeptide 2; symbol=CYP87A2; full_name=cytochrome P450%2C family 87%2C subfamily A%2C polypeptide 2; curator_summary=encodes a protein with cytochrome P450 domain; computational_description=cytochrome P450%2C family 87%2C subfamily A%2C polypeptide 2 (CYP87A2)%3B FUNCTIONS IN: electron carrier activity%2C monooxygenase activity%2C iron ion binding%2C oxygen binding%2C heme binding%3B INVOLVED IN: oxidation reduction%3B EXPRESSED IN: root%3B CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128)%2C Cytochrome P450%2C conserved site (InterPro:IPR017972)%2C Cytochrome P450%2C E-class%2C group I (InterPro:IPR002401)%3B BEST Arabidopsis thaliana protein match is: cytochrome P450%2C family 708%2C subfamily A%2C polypeptide 3 (TAIR:AT1G78490.1)%3B Has 31076 Blast hits to 30988 proteins in 1655 species: Archae - 56%3B Bacteria - 5533%3B Metazoa - 10873%3B Fungi - 5392%3B Plants - 7791%3B Viruses - 3%3B Other Eukaryotes - 1428 (source: NCBI BLink).; Dbxref=PMID:16489130, PMID:17061125, locus:2195098; locus_type=protein_coding
AT1G12750.1	chr1:004345100	0.0	C/4345100-4345459,4345550-4345713,4345809-4345972,4346453-4346688	AT1G12750.1 CDS AT1G12750 ID=AT1G12750.1; Parent=AT1G12750; Name=AT1G12750.1; Note=RHOMBOID-like protein 6; conf_class=1; symbol=RBL6; Alias=ATRBL6, RHOMBOID-like protein 6; full_name=RHOMBOID-like protein 6; computational_description=RHOMBOID-like protein 6 (RBL6)%3B FUNCTIONS IN: serine-type endopeptidase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: integral to membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase S54%2C rhomboid (InterPro:IPR002610)%3B BEST Arabidopsis thaliana protein match is: RHOMBOID-like 2 (TAIR:AT1G63120.1)%3B Has 6272 Blast hits to 6271 proteins in 1782 species: Archae - 138%3B Bacteria - 3818%3B Metazoa - 537%3B Fungi - 159%3B Plants - 344%3B Viruses - 0%3B Other Eukaryotes - 1276 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16223493, PMID:16895613, PMID:17181860, PMID:17521445, PMID:18543065, PMID:18650403, PMID:18775970, locus:2195067; locus_type=protein_coding
AT1G12750.3	chr1:004345100	0.0	C/4345100-4345459,4345550-4345713,4345809-4345972,4346453-4346688	AT1G12750.3 CDS AT1G12750 ID=AT1G12750.3; Parent=AT1G12750; Name=AT1G12750.3; Note=RHOMBOID-like protein 6; conf_class=2; symbol=RBL6; Alias=ATRBL6, RHOMBOID-like protein 6; full_name=RHOMBOID-like protein 6; computational_description=RHOMBOID-like protein 6 (RBL6)%3B FUNCTIONS IN: serine-type endopeptidase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: integral to membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase S54%2C rhomboid (InterPro:IPR002610)%3B BEST Arabidopsis thaliana protein match is: RHOMBOID-like 2 (TAIR:AT1G63120.1)%3B Has 6272 Blast hits to 6271 proteins in 1782 species: Archae - 138%3B Bacteria - 3818%3B Metazoa - 537%3B Fungi - 159%3B Plants - 344%3B Viruses - 0%3B Other Eukaryotes - 1276 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16223493, PMID:16895613, PMID:17181860, PMID:17521445, PMID:18543065, PMID:18650403, PMID:18775970, locus:2195067; locus_type=protein_coding
AT1G12750.4	chr1:004345100	0.0	C/4345100-4345459,4345550-4345713,4345809-4345972,4346453-4346688	AT1G12750.4 CDS AT1G12750 ID=AT1G12750.4; Parent=AT1G12750; Name=AT1G12750.4; Note=RHOMBOID-like protein 6; symbol=RBL6; Alias=ATRBL6, RHOMBOID-like protein 6; full_name=RHOMBOID-like protein 6; Dbxref=PMID:16223493, PMID:16895613, PMID:17181860, PMID:17521445, PMID:18543065, PMID:18650403, PMID:18775970, locus:2195067; computational_description=RHOMBOID-like protein 6 (RBL6)%3B FUNCTIONS IN: serine-type endopeptidase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: integral to membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase S54%2C rhomboid (InterPro:IPR002610)%3B BEST Arabidopsis thaliana protein match is: RHOMBOID-like 2 (TAIR:AT1G63120.1)%3B Has 6272 Blast hits to 6271 proteins in 1782 species: Archae - 138%3B Bacteria - 3818%3B Metazoa - 537%3B Fungi - 159%3B Plants - 344%3B Viruses - 0%3B Other Eukaryotes - 1276 (source: NCBI BLink).; locus_type=protein_coding
AT1G12750.6	chr1:004345100	0.0	C/4345100-4345459,4345550-4345713,4345809-4345972,4346453-4346688	AT1G12750.6 CDS AT1G12750 ID=AT1G12750.6; Parent=AT1G12750; Name=AT1G12750.6; Note=RHOMBOID-like protein 6; symbol=RBL6; Alias=ATRBL6, RHOMBOID-like protein 6; full_name=RHOMBOID-like protein 6; Dbxref=PMID:16223493, PMID:16895613, PMID:17181860, PMID:17521445, PMID:18543065, PMID:18650403, PMID:18775970, locus:2195067; computational_description=RHOMBOID-like protein 6 (RBL6)%3B FUNCTIONS IN: serine-type endopeptidase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: integral to membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase S54%2C rhomboid (InterPro:IPR002610)%3B BEST Arabidopsis thaliana protein match is: RHOMBOID-like 2 (TAIR:AT1G63120.1)%3B Has 6272 Blast hits to 6271 proteins in 1782 species: Archae - 138%3B Bacteria - 3818%3B Metazoa - 537%3B Fungi - 159%3B Plants - 344%3B Viruses - 0%3B Other Eukaryotes - 1276 (source: NCBI BLink).; locus_type=protein_coding
AT1G12750.7	chr1:004345100	0.0	C/4345100-4345459,4345550-4345713,4345809-4345972,4346453-4346688	AT1G12750.7 CDS AT1G12750 ID=AT1G12750.7; Parent=AT1G12750; Name=AT1G12750.7; Note=RHOMBOID-like protein 6; symbol=RBL6; Alias=ATRBL6, RHOMBOID-like protein 6; full_name=RHOMBOID-like protein 6; Dbxref=PMID:16223493, PMID:16895613, PMID:17181860, PMID:17521445, PMID:18543065, PMID:18650403, PMID:18775970, locus:2195067; computational_description=RHOMBOID-like protein 6 (RBL6)%3B FUNCTIONS IN: serine-type endopeptidase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: integral to membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase S54%2C rhomboid (InterPro:IPR002610)%3B BEST Arabidopsis thaliana protein match is: RHOMBOID-like 2 (TAIR:AT1G63120.1)%3B Has 6272 Blast hits to 6271 proteins in 1782 species: Archae - 138%3B Bacteria - 3818%3B Metazoa - 537%3B Fungi - 159%3B Plants - 344%3B Viruses - 0%3B Other Eukaryotes - 1276 (source: NCBI BLink).; locus_type=protein_coding
AT1G12750.2	chr1:004345390	0.0	C/4345390-4345407,4345550-4345713,4345809-4345972,4346453-4346688	AT1G12750.2 CDS AT1G12750 ID=AT1G12750.2; Parent=AT1G12750; Name=AT1G12750.2; Note=RHOMBOID-like protein 6; conf_class=2; symbol=RBL6; Alias=ATRBL6, RHOMBOID-like protein 6; full_name=RHOMBOID-like protein 6; computational_description=RHOMBOID-like protein 6 (RBL6)%3B FUNCTIONS IN: serine-type endopeptidase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: integral to membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase S54%2C rhomboid (InterPro:IPR002610)%3B BEST Arabidopsis thaliana protein match is: RHOMBOID-like 2 (TAIR:AT1G63120.1)%3B Has 6272 Blast hits to 6271 proteins in 1782 species: Archae - 138%3B Bacteria - 3818%3B Metazoa - 537%3B Fungi - 159%3B Plants - 344%3B Viruses - 0%3B Other Eukaryotes - 1276 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16223493, PMID:16895613, PMID:17181860, PMID:17521445, PMID:18543065, PMID:18650403, PMID:18775970, locus:2195067; locus_type=protein_coding
AT1G12750.5	chr1:004345481	0.0	C/4345481-4345713,4345809-4345972,4346453-4346688	AT1G12750.5 CDS AT1G12750 ID=AT1G12750.5; Parent=AT1G12750; Name=AT1G12750.5; Note=RHOMBOID-like protein 6; symbol=RBL6; Alias=ATRBL6, RHOMBOID-like protein 6; full_name=RHOMBOID-like protein 6; computational_description=RHOMBOID-like protein 6 (RBL6)%3B FUNCTIONS IN: serine-type endopeptidase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: integral to membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase S54%2C rhomboid (InterPro:IPR002610)%3B BEST Arabidopsis thaliana protein match is: RHOMBOID-like 2 (TAIR:AT1G63120.1)%3B Has 6272 Blast hits to 6271 proteins in 1782 species: Archae - 138%3B Bacteria - 3818%3B Metazoa - 537%3B Fungi - 159%3B Plants - 344%3B Viruses - 0%3B Other Eukaryotes - 1276 (source: NCBI BLink).; Dbxref=PMID:16223493, PMID:16895613, PMID:17181860, PMID:17521445, PMID:18543065, PMID:18650403, PMID:18775970, locus:2195067; locus_type=protein_coding
AT1G12760.1	chr1:004348728	0.0	W/4348728-4349359,4349664-4349783,4349859-4349991,4350075-4350242,4350339-4350512	AT1G12760.1 CDS AT1G12760 ID=AT1G12760.1; Parent=AT1G12760; Name=AT1G12760.1; Note=Zinc finger%2C C3HC4 type (RING finger) family protein; conf_class=2; computational_description=Zinc finger%2C C3HC4 type (RING finger) family protein%3B FUNCTIONS IN: ubiquitin-protein ligase activity%2C zinc ion binding%3B LOCATED IN: chloroplast%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: Zinc finger%2C C3HC4 type (RING finger) family protein (TAIR:AT1G63170.1)%3B Has 9873 Blast hits to 9851 proteins in 276 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 2638%3B Fungi - 764%3B Plants - 5094%3B Viruses - 23%3B Other Eukaryotes - 1348 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11983057, PMID:14576160, PMID:14756305, PMID:15644464, PMID:16339806, PMID:17521445, PMID:18218973, locus:2195077; locus_type=protein_coding
AT1G12760.2	chr1:004348941	0.0	W/4348941-4349359,4349664-4349783,4349859-4349991,4350075-4350242,4350339-4350512	AT1G12760.2 CDS AT1G12760 ID=AT1G12760.2; Parent=AT1G12760; Name=AT1G12760.2; Note=Zinc finger%2C C3HC4 type (RING finger) family protein; conf_class=2; computational_description=Zinc finger%2C C3HC4 type (RING finger) family protein%3B FUNCTIONS IN: ubiquitin-protein ligase activity%2C zinc ion binding%3B LOCATED IN: chloroplast%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: Zinc finger%2C C3HC4 type (RING finger) family protein (TAIR:AT1G63170.1)%3B Has 9873 Blast hits to 9851 proteins in 276 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 2638%3B Fungi - 764%3B Plants - 5094%3B Viruses - 23%3B Other Eukaryotes - 1348 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11983057, PMID:14576160, PMID:14756305, PMID:15644464, PMID:16339806, PMID:17521445, PMID:18218973, locus:2195077; locus_type=protein_coding
AT1G12770.1	chr1:004351888	0.0	W/4351888-4353543	AT1G12770.1 CDS AT1G12770 ID=AT1G12770.1; Parent=AT1G12770; Name=AT1G12770.1; Note=P-loop containing nucleoside triphosphate hydrolases superfamily protein; curator_summary=Encodes a DEAD-box RNA helicase that localizes to mitochondria and is essential for regulating cell-to-cell transport via plasmodesmata.; conf_class=2; symbol=EMB1586; Alias=ISE1, INCREASED SIZE EXCLUSION LIMIT 1; full_name=embryo defective 1586; computational_description=embryo defective 1586 (EMB1586)%3B FUNCTIONS IN: RNA helicase activity%3B INVOLVED IN: plasmodesma organization%2C plasmodesmata-mediated intercellular transport%2C embryo development ending in seed dormancy%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: embryo%2C root%2C flower%2C shoot meristem%3B CONTAINS InterPro DOMAIN/s: RNA helicase%2C DEAD-box type%2C Q motif (InterPro:IPR014014)%2C DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (InterPro:IPR011545)%2C DEAD-like helicase%2C N-terminal (InterPro:IPR014001)%2C DNA/RNA helicase%2C C-terminal (InterPro:IPR001650)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain (InterPro:IPR014021)%3B BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G60990.1)%3B Has 38833 Blast hits to 38121 proteins in 2993 species: Archae - 753%3B Bacteria - 18819%3B Metazoa - 5837%3B Fungi - 4441%3B Plants - 2445%3B Viruses - 12%3B Other Eukaryotes - 6526 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11779812, PMID:15851028, PMID:16113208, PMID:16131612, PMID:17786563, PMID:19805190, PMID:20434343, PMID:22106293, locus:2010306; locus_type=protein_coding
AT1G12770.2	chr1:004351888	0.0	W/4351888-4353543	AT1G12770.2 CDS AT1G12770 ID=AT1G12770.2; Parent=AT1G12770; Name=AT1G12770.2; Note=P-loop containing nucleoside triphosphate hydrolases superfamily protein; symbol=EMB1586; Alias=ISE1, INCREASED SIZE EXCLUSION LIMIT 1; full_name=embryo defective 1586; Dbxref=PMID:11779812, PMID:15851028, PMID:16113208, PMID:16131612, PMID:17786563, PMID:19805190, PMID:20434343, PMID:22106293, locus:2010306; curator_summary=Encodes a DEAD-box RNA helicase that localizes to mitochondria and is essential for regulating cell-to-cell transport via plasmodesmata.; computational_description=embryo defective 1586 (EMB1586)%3B FUNCTIONS IN: RNA helicase activity%3B INVOLVED IN: plasmodesma organization%2C plasmodesmata-mediated intercellular transport%2C embryo development ending in seed dormancy%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: embryo%2C root%2C flower%2C shoot meristem%3B CONTAINS InterPro DOMAIN/s: RNA helicase%2C DEAD-box type%2C Q motif (InterPro:IPR014014)%2C DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (InterPro:IPR011545)%2C DEAD-like helicase%2C N-terminal (InterPro:IPR014001)%2C DNA/RNA helicase%2C C-terminal (InterPro:IPR001650)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain (InterPro:IPR014021)%3B BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G60990.1)%3B Has 38833 Blast hits to 38121 proteins in 2993 species: Archae - 753%3B Bacteria - 18819%3B Metazoa - 5837%3B Fungi - 4441%3B Plants - 2445%3B Viruses - 12%3B Other Eukaryotes - 6526 (source: NCBI BLink).; locus_type=protein_coding
AT1G12775.1	chr1:004353906	0.0	W/4353906-4355840	AT1G12775.1 CDS AT1G12775 ID=AT1G12775.1; Parent=AT1G12775; Name=AT1G12775.1; Note=Pentatricopeptide repeat (PPR) superfamily protein; conf_class=1; computational_description=Pentatricopeptide repeat (PPR) superfamily protein%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 7 plant structures%3B EXPRESSED DURING: F mature embryo stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G12300.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:17400893, PMID:17521445, locus:1009023134; locus_type=protein_coding
AT1G12780.1	chr1:004356124	0.0	C/4356124-4356208,4356292-4356383,4356466-4356548,4356636-4356945,4357199-4357300,4357412-4357547,4357640-4357689,4357923-4358120	AT1G12780.1 CDS AT1G12780 ID=AT1G12780.1; Parent=AT1G12780; Name=AT1G12780.1; Note=UDP-D-glucose/UDP-D-galactose 4-epimerase 1; curator_summary=Encodes a UDP-glucose epimerase that catalyzes the interconversion of the sugar nucleotides UDP-glucose UDP-galactose via a UDP-4-keto-hexose intermediate. Responsive to stress.; conf_class=2; symbol=UGE1; Alias=ATUGE1, A. THALIANA UDP-GLC 4-EPIMERASE 1; full_name=UDP-D-glucose/UDP-D-galactose 4-epimerase 1; computational_description=UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (UGE1)%3B FUNCTIONS IN: UDP-glucose 4-epimerase activity%2C protein dimerization activity%3B INVOLVED IN: response to stress%2C galactose biosynthetic process%3B LOCATED IN: cytosol%2C plasma membrane%3B EXPRESSED IN: 32 plant structures%3B EXPRESSED DURING: 16 growth stages%3B CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509)%2C NAD(P)-binding domain (InterPro:IPR016040)%2C UDP-glucose 4-epimerase (InterPro:IPR005886)%2C Nucleotide sugar epimerase (InterPro:IPR008089)%3B BEST Arabidopsis thaliana protein match is: UDP-D-glucose/UDP-D-galactose 4-epimerase 3 (TAIR:AT1G63180.1)%3B Has 42430 Blast hits to 42420 proteins in 2995 species: Archae - 799%3B Bacteria - 25009%3B Metazoa - 650%3B Fungi - 500%3B Plants - 1081%3B Viruses - 38%3B Other Eukaryotes - 14353 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:8615692, PMID:12923061, PMID:14558660, PMID:15247385, PMID:15489280, PMID:15466488, PMID:15610345, PMID:16299171, PMID:16553896, PMID:16644739, PMID:16632591, PMID:17521445, PMID:17497164, PMID:17496119, PMID:17631525, PMID:18650403, PMID:18805951, PMID:18775970, PMID:19291320, PMID:19754426, PMID:20118269, locus:2010371; locus_type=protein_coding
AT1G12790.1	chr1:004359597	0.0	C/4359597-4359746,4359898-4359981,4360067-4360107,4360195-4360289,4360380-4360475,4360558-4360646,4360735-4360862,4361153-4361222	AT1G12790.1 CDS AT1G12790 ID=AT1G12790.1; Parent=AT1G12790; Name=AT1G12790.1; Note=DNA ligase-like protein; conf_class=1; computational_description=CONTAINS InterPro DOMAIN/s: RuvA domain 2-like (InterPro:IPR010994)%3B Has 29 Blast hits to 29 proteins in 9 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 0%3B Fungi - 0%3B Plants - 27%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16394097, PMID:17208327, PMID:17521445, PMID:20736450, locus:2010321; locus_type=protein_coding
AT1G12800.1	chr1:004361778	0.0	C/4361778-4361852,4361946-4362014,4362178-4362285,4362357-4362449,4362537-4362608,4362684-4362770,4362884-4363063,4363146-4363445,4363531-4363620,4363704-4363824,4363915-4364041,4364116-4364851,4364944-4365189	AT1G12800.1 CDS AT1G12800 ID=AT1G12800.1; Parent=AT1G12800; Name=AT1G12800.1; Note=Nucleic acid-binding%2C OB-fold-like protein; conf_class=2; computational_description=Nucleic acid-binding%2C OB-fold-like protein%3B FUNCTIONS IN: RNA binding%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Nucleic acid-binding%2C OB-fold-like (InterPro:IPR016027)%2C Nucleic acid-binding%2C OB-fold (InterPro:IPR012340)%2C Ribosomal protein S1%2C RNA-binding domain (InterPro:IPR003029)%3B BEST Arabidopsis thaliana protein match is: Nucleic acid-binding proteins superfamily (TAIR:AT3G23700.1)%3B Has 17110 Blast hits to 8844 proteins in 2496 species: Archae - 8%3B Bacteria - 12066%3B Metazoa - 261%3B Fungi - 174%3B Plants - 188%3B Viruses - 3%3B Other Eukaryotes - 4410 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:17521445, PMID:17885809, PMID:18515828, PMID:18650403, PMID:18854047, locus:2010336; locus_type=protein_coding
AT1G12805.1	chr1:004366728	0.0	W/4366728-4366955	AT1G12805.1 CDS AT1G12805 ID=AT1G12805.1; Parent=AT1G12805; Name=AT1G12805.1; Note=nucleotide binding protein; conf_class=1; computational_description=nucleotide binding%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:20032078, locus:1006230680; locus_type=protein_coding
AT1G12810.1	chr1:004367332	0.0	W/4367332-4367374,4367494-4367791,4368472-4368520	AT1G12810.1 CDS AT1G12810 ID=AT1G12810.1; Parent=AT1G12810; Name=AT1G12810.1; Note=proline-rich family protein; conf_class=2; computational_description=proline-rich family protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33520.1)%3B Has 20080 Blast hits to 10426 proteins in 614 species: Archae - 4%3B Bacteria - 1877%3B Metazoa - 7835%3B Fungi - 2952%3B Plants - 4732%3B Viruses - 459%3B Other Eukaryotes - 2221 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18539778, PMID:18650403, PMID:18775970, locus:2010351; locus_type=protein_coding
AT1G12810.2	chr1:004367332	0.0	W/4367332-4367374,4367494-4367791,4368020-4368118,4368472-4368520	AT1G12810.2 CDS AT1G12810 ID=AT1G12810.2; Parent=AT1G12810; Name=AT1G12810.2; Note=proline-rich family protein; conf_class=6; computational_description=proline-rich family protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33520.1)%3B Has 20080 Blast hits to 10426 proteins in 614 species: Archae - 4%3B Bacteria - 1877%3B Metazoa - 7835%3B Fungi - 2952%3B Plants - 4732%3B Viruses - 459%3B Other Eukaryotes - 2221 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:18539778, PMID:18650403, PMID:18775970, locus:2010351; locus_type=protein_coding
AT1G04973.1	chr1:004367768	0.0	C/4367768-4368493	AT1G04973.1 antisense_lncRNA AT1G04973 ID=AT1G04973.1; Parent=AT1G04973; Name=AT1G04973.1; description=Natural antisense transcript overlaps with AT1G12810; Note=Natural antisense transcript overlaps with AT1G12810; locus_type=antisense_long_noncoding_rna
AT1G12820.1	chr1:004368879	0.0	C/4368879-4369664,4369757-4370252,4370329-4370780	AT1G12820.1 CDS AT1G12820 ID=AT1G12820.1; Parent=AT1G12820; Name=AT1G12820.1; Note=auxin signaling F-box 3; curator_summary=Auxin receptor involved in primary and lateral root growth inhibition in response to nitrate. Target of miR393. Induced by nitrate in primary roots.; conf_class=2; symbol=AFB3; full_name=auxin signaling F-box 3; computational_description=auxin signaling F-box 3 (AFB3)%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%3B BEST Arabidopsis thaliana protein match is: auxin signaling F-box 2 (TAIR:AT3G26810.1)%3B Has 2450 Blast hits to 1661 proteins in 170 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 823%3B Fungi - 153%3B Plants - 1347%3B Viruses - 0%3B Other Eukaryotes - 123 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15078335, PMID:15258262, PMID:15345049, PMID:15632092, PMID:16489130, PMID:15992545, PMID:15917797, PMID:17360645, PMID:17435085, PMID:17400893, PMID:17521445, PMID:18192068, PMID:18287490, PMID:19106375, PMID:20018756, PMID:20142497, PMID:20661628, PMID:21408147, PMID:21482761, PMID:22042293, PMID:22658222, PMID:23847199, PMID:24642706, PMID:25329496, locus:2010366; locus_type=protein_coding
AT1G04977.1	chr1:004368980	0.0	W/4368980-4369617	AT1G04977.1 antisense_lncRNA AT1G04977 ID=AT1G04977.1; Parent=AT1G04977; Name=AT1G04977.1; description=Natural antisense transcript overlaps with AT1G12820; Note=Natural antisense transcript overlaps with AT1G12820; locus_type=antisense_long_noncoding_rna
AT1G12830.1	chr1:004374412	0.0	C/4374412-4375053	AT1G12830.1 CDS AT1G12830 ID=AT1G12830.1; Parent=AT1G12830; Name=AT1G12830.1; Note=nucleolin; conf_class=1; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B Has 39778 Blast hits to 22088 proteins in 1060 species: Archae - 152%3B Bacteria - 6161%3B Metazoa - 14109%3B Fungi - 6144%3B Plants - 2156%3B Viruses - 601%3B Other Eukaryotes - 10455 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14730060, PMID:23517122, locus:2010376; locus_type=protein_coding
AT1TE14210	chr1:004374596	0.0	C/4374596-4374826	AT1TE14210 transposable_element AT1TE14210 ID=AT1TE14210; Name=AT1TE14210; Alias=ATMU10
AT1G12840.1	chr1:004375584	0.0	W/4375584-4375697,4375828-4375896,4375982-4376109,4376206-4376305,4376488-4376555,4376804-4376945,4377045-4377161,4377340-4377465,4377551-4377634,4377723-4377802,4378121-4378220	AT1G12840.1 CDS AT1G12840 ID=AT1G12840.1; Parent=AT1G12840; Name=AT1G12840.1; Note=vacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump C subunit (DET3); curator_summary=Encodes subunit C of the vacuolar H(+)-ATPase (V-ATPase). Bound and phosphorylated by AtWNK8.; conf_class=2; symbol=DET3; Alias=ATVHA-C, ARABIDOPSIS THALIANA VACUOLAR ATP SYNTHASE SUBUNIT C; full_name=DE-ETIOLATED 3; computational_description=DE-ETIOLATED 3 (DET3)%3B FUNCTIONS IN: proton-transporting ATPase activity%2C rotational mechanism%3B INVOLVED IN: lignin biosynthetic process%2C regulation of carbohydrate biosynthetic process%2C unidimensional cell growth%3B LOCATED IN: in 6 components%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 17 growth stages%3B CONTAINS InterPro DOMAIN/s: ATPase%2C V1 complex%2C subunit C (InterPro:IPR004907)%3B Has 563 Blast hits to 541 proteins in 227 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 263%3B Fungi - 140%3B Plants - 72%3B Viruses - 0%3B Other Eukaryotes - 88 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10617574, PMID:9093863, PMID:8314087, PMID:11009417, PMID:11604454, PMID:11752385, PMID:11950611, PMID:14690508, PMID:16159327, PMID:16427632, PMID:16618929, PMID:18088305, PMID:18441211, PMID:18775970, PMID:17875927, PMID:18499075, PMID:20180921, PMID:20118269, PMID:21847017, PMID:22215665, locus:2010386; locus_type=protein_coding
AT1G12845.1	chr1:004379023	0.0	C/4379023-4379382	AT1G12845.1 CDS AT1G12845 ID=AT1G12845.1; Parent=AT1G12845; Name=AT1G12845.1; Note=transmembrane protein; conf_class=1; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B Has 8 Blast hits to 8 proteins in 4 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 8%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:18650403, locus:505006119; locus_type=protein_coding
AT1G12850.1	chr1:004380022	0.0	C/4380022-4380666,4381005-4381577	AT1G12850.1 CDS AT1G12850 ID=AT1G12850.1; Parent=AT1G12850; Name=AT1G12850.1; Note=Phosphoglycerate mutase family protein; conf_class=2; computational_description=Phosphoglycerate mutase family protein%3B FUNCTIONS IN: catalytic activity%3B INVOLVED IN: N-terminal protein myristoylation%2C metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Histidine phosphatase superfamily%2C clade-1 (InterPro:IPR013078)%2C Uncharacterised conserved protein UCP036920%2C phosphoglycerate mutase%2C plant X4/Y4 (InterPro:IPR017070)%3B BEST Arabidopsis thaliana protein match is: Phosphoglycerate mutase family protein (TAIR:AT3G26780.1)%3B Has 1723 Blast hits to 1681 proteins in 525 species: Archae - 4%3B Bacteria - 974%3B Metazoa - 334%3B Fungi - 35%3B Plants - 147%3B Viruses - 2%3B Other Eukaryotes - 227 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12912986, locus:2010396; locus_type=protein_coding
AT1TE14230	chr1:004381722	0.0	C/4381722-4382219	AT1TE14230 transposable_element AT1TE14230 ID=AT1TE14230; Name=AT1TE14230; Alias=ATREP10A
AT1G12855.1	chr1:004382223	0.0	W/4382223-4383611	AT1G12855.1 CDS AT1G12855 ID=AT1G12855.1; Parent=AT1G12855; Name=AT1G12855.1; Note=F-box family protein; conf_class=4; computational_description=F-box family protein%3B LOCATED IN: chloroplast%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%2C F-box associated domain%2C type 1 (InterPro:IPR006527)%2C F-box associated interaction domain (InterPro:IPR017451)%3B BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT1G13200.1).; conf_rating=***; Dbxref=locus:6530298137; locus_type=protein_coding
AT1G12860.1	chr1:004384758	0.0	W/4384758-4385642,4385724-4385936,4386019-4386189,4386309-4386392	AT1G12860.1 CDS AT1G12860 ID=AT1G12860.1; Parent=AT1G12860; Name=AT1G12860.1; Note=basic helix-loop-helix (bHLH) DNA-binding superfamily protein; curator_summary=Encodes ICE2 (Inducer of CBF Expression 2)%2C a transcription factor of the bHLH family that participates in the response to deep freezing through the cold acclimation-dependent pathway. Overexpression of ICE2 results in increased tolerance to deep freezing stress after cold acclimation.; conf_class=2; symbol=SCRM2; Alias=ICE2, INDUCER OF CBF EXPRESSION 2; full_name=SCREAM 2; computational_description=SCREAM 2 (SCRM2)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: response to freezing%2C guard mother cell differentiation%2C regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT3G26744.4)%3B Has 4150 Blast hits to 4134 proteins in 202 species: Archae - 0%3B Bacteria - 1%3B Metazoa - 48%3B Fungi - 52%3B Plants - 4003%3B Viruses - 0%3B Other Eukaryotes - 46 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:12679534, PMID:12672693, PMID:12897250, PMID:14600211, PMID:15937229, PMID:18650403, PMID:18641265, PMID:19026725, PMID:19760875, PMID:20736450, PMID:23933884, PMID:24377444, PMID:25304202, PMID:25443829, PMID:25641738, locus:2010311; locus_type=protein_coding
AT1G12860.2	chr1:004384758	0.0	W/4384758-4385642,4385724-4385936,4386019-4386198	AT1G12860.2 CDS AT1G12860 ID=AT1G12860.2; Parent=AT1G12860; Name=AT1G12860.2; Note=basic helix-loop-helix (bHLH) DNA-binding superfamily protein; symbol=SCRM2; Alias=ICE2, INDUCER OF CBF EXPRESSION 2; full_name=SCREAM 2; curator_summary=Encodes ICE2 (Inducer of CBF Expression 2)%2C a transcription factor of the bHLH family that participates in the response to deep freezing through the cold acclimation-dependent pathway. Overexpression of ICE2 results in increased tolerance to deep freezing stress after cold acclimation.; computational_description=SCREAM 2 (SCRM2)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: response to freezing%2C guard mother cell differentiation%2C regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT3G26744.4)%3B Has 4150 Blast hits to 4134 proteins in 202 species: Archae - 0%3B Bacteria - 1%3B Metazoa - 48%3B Fungi - 52%3B Plants - 4003%3B Viruses - 0%3B Other Eukaryotes - 46 (source: NCBI BLink).; Dbxref=PMID:11118137, PMID:12679534, PMID:12672693, PMID:12897250, PMID:14600211, PMID:15937229, PMID:18650403, PMID:18641265, PMID:19026725, PMID:19760875, PMID:20736450, PMID:23933884, PMID:24377444, PMID:25304202, PMID:25443829, PMID:25641738, locus:2010311; locus_type=protein_coding
AT1G12860.3	chr1:004384758	0.0	W/4384758-4385723	AT1G12860.3 CDS AT1G12860 ID=AT1G12860.3; Parent=AT1G12860; Name=AT1G12860.3; Note=basic helix-loop-helix (bHLH) DNA-binding superfamily protein; symbol=SCRM2; Alias=ICE2, INDUCER OF CBF EXPRESSION 2; full_name=SCREAM 2; curator_summary=Encodes ICE2 (Inducer of CBF Expression 2)%2C a transcription factor of the bHLH family that participates in the response to deep freezing through the cold acclimation-dependent pathway. Overexpression of ICE2 results in increased tolerance to deep freezing stress after cold acclimation.; computational_description=SCREAM 2 (SCRM2)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: response to freezing%2C guard mother cell differentiation%2C regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT3G26744.4)%3B Has 4150 Blast hits to 4134 proteins in 202 species: Archae - 0%3B Bacteria - 1%3B Metazoa - 48%3B Fungi - 52%3B Plants - 4003%3B Viruses - 0%3B Other Eukaryotes - 46 (source: NCBI BLink).; Dbxref=PMID:11118137, PMID:12679534, PMID:12672693, PMID:12897250, PMID:14600211, PMID:15937229, PMID:18650403, PMID:18641265, PMID:19026725, PMID:19760875, PMID:20736450, PMID:23933884, PMID:24377444, PMID:25304202, PMID:25443829, PMID:25641738, locus:2010311; locus_type=protein_coding
AT1G12870.1	chr1:004387129	0.0	C/4387129-4387236,4387968-4389110	AT1G12870.1 CDS AT1G12870 ID=AT1G12870.1; Parent=AT1G12870; Name=AT1G12870.1; Note=F-box and associated interaction domains-containing protein; conf_class=4; computational_description=F-box and associated interaction domains-containing protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: cultured cell%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%2C F-box associated domain%2C type 1 (InterPro:IPR006527)%2C F-box associated interaction domain (InterPro:IPR017451)%3B BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G12855.1)%3B Has 1934 Blast hits to 1913 proteins in 53 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1930%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:20736450, locus:2010316; locus_type=protein_coding
AT1G12880.1	chr1:004390036	0.0	W/4390036-4390106,4390251-4390374,4390457-4390540,4390632-4390781,4390864-4391046	AT1G12880.1 CDS AT1G12880 ID=AT1G12880.1; Parent=AT1G12880; Name=AT1G12880.1; Note=nudix hydrolase homolog 12; conf_class=1; symbol=NUDT12; Alias=atnudt12, nudix hydrolase homolog 12; full_name=nudix hydrolase homolog 12; computational_description=nudix hydrolase homolog 12 (NUDT12)%3B FUNCTIONS IN: hydrolase activity%3B INVOLVED IN: biological_process unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797)%2C NUDIX hydrolase%2C conserved site (InterPro:IPR020084)%2C NUDIX hydrolase domain (InterPro:IPR000086)%3B BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 13 (TAIR:AT3G26690.2)%3B Has 1294 Blast hits to 1293 proteins in 373 species: Archae - 0%3B Bacteria - 562%3B Metazoa - 265%3B Fungi - 111%3B Plants - 235%3B Viruses - 0%3B Other Eukaryotes - 121 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15878881, PMID:18815383, PMID:18775970, locus:2010331; locus_type=protein_coding
AT1G04983.1	chr1:004391438	0.0	W/4391438-4391675	AT1G04983.1 lnc_RNA AT1G04983 ID=AT1G04983.1; Parent=AT1G04983; Name=AT1G04983.1; locus_type=long_noncoding_rna
AT1G12890.1	chr1:004391734	0.0	W/4391734-4392393	AT1G12890.1 CDS AT1G12890 ID=AT1G12890.1; Parent=AT1G12890; Name=AT1G12890.1; Note=Integrase-type DNA-binding superfamily protein; curator_summary=encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3%2C ATERF-4%2C ATERF-7%2C and leafy petiole.; conf_class=1; computational_description=Integrase-type DNA-binding superfamily protein%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B LOCATED IN: nucleus%3B CONTAINS InterPro DOMAIN/s: DNA-binding%2C integrase-type (InterPro:IPR016177)%2C Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (InterPro:IPR001471)%3B BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G18560.1)%3B Has 5243 Blast hits to 5226 proteins in 230 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 5234%3B Viruses - 0%3B Other Eukaryotes - 9 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11118137, locus:2010346; locus_type=protein_coding
AT1G12900.1	chr1:004392634	0.0	C/4392634-4393136,4393224-4393468,4393546-4393850,4394044-4394148,4394242-4394283	AT1G12900.1 CDS AT1G12900 ID=AT1G12900.1; Parent=AT1G12900; Name=AT1G12900.1; Note=glyceraldehyde 3-phosphate dehydrogenase A subunit 2; conf_class=2; symbol=GAPA-2; full_name=glyceraldehyde 3-phosphate dehydrogenase A subunit 2; computational_description=glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (GAPA-2)%3B FUNCTIONS IN: NAD or NADH binding%2C glyceraldehyde-3-phosphate dehydrogenase activity%3B INVOLVED IN: oxidation reduction%2C glycolysis%2C glucose metabolic process%3B LOCATED IN: apoplast%2C chloroplast stroma%2C chloroplast%2C membrane%2C chloroplast envelope%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase subfamily (InterPro:IPR000173)%2C Glyceraldehyde 3-phosphate dehydrogenase family (InterPro:IPR020831)%2C Glyceraldehyde-3-phosphate dehydrogenase%2C type I (InterPro:IPR006424)%2C Glyceraldehyde 3-phosphate dehydrogenase%2C active site (InterPro:IPR020830)%2C Glyceraldehyde 3-phosphate dehydrogenase%2C catalytic domain (InterPro:IPR020829)%2C Glyceraldehyde 3-phosphate dehydrogenase%2C catalytic domain%2C subgroup (InterPro:IPR020832)%2C Glyceraldehyde 3-phosphate dehydrogenase%2C NAD(P) binding domain (InterPro:IPR020828)%3B BEST Arabidopsis thaliana protein match is: glyceraldehyde 3-phosphate dehydrogenase A subunit (TAIR:AT3G26650.1)%3B Has 24704 Blast hits to 24695 proteins in 6149 species: Archae - 47%3B Bacteria - 10700%3B Metazoa - 2230%3B Fungi - 2778%3B Plants - 3753%3B Viruses - 0%3B Other Eukaryotes - 5196 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:14604444, PMID:15052571, PMID:15533878, PMID:15998247, PMID:16244144, PMID:16460663, PMID:17142483, PMID:17828791, PMID:18433503, PMID:18650403, PMID:18633119, locus:2010361; locus_type=protein_coding
AT1G12900.2	chr1:004392634	0.0	C/4392634-4393136,4393224-4393468,4393542-4393747	AT1G12900.2 CDS AT1G12900 ID=AT1G12900.2; Parent=AT1G12900; Name=AT1G12900.2; Note=glyceraldehyde 3-phosphate dehydrogenase A subunit 2; conf_class=2; symbol=GAPA-2; full_name=glyceraldehyde 3-phosphate dehydrogenase A subunit 2; computational_description=glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (GAPA-2)%3B FUNCTIONS IN: NAD or NADH binding%2C glyceraldehyde-3-phosphate dehydrogenase activity%3B INVOLVED IN: oxidation reduction%2C glycolysis%2C glucose metabolic process%3B LOCATED IN: apoplast%2C chloroplast stroma%2C chloroplast%2C membrane%2C chloroplast envelope%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase subfamily (InterPro:IPR000173)%2C Glyceraldehyde 3-phosphate dehydrogenase family (InterPro:IPR020831)%2C Glyceraldehyde-3-phosphate dehydrogenase%2C type I (InterPro:IPR006424)%2C Glyceraldehyde 3-phosphate dehydrogenase%2C active site (InterPro:IPR020830)%2C Glyceraldehyde 3-phosphate dehydrogenase%2C catalytic domain (InterPro:IPR020829)%2C Glyceraldehyde 3-phosphate dehydrogenase%2C catalytic domain%2C subgroup (InterPro:IPR020832)%2C Glyceraldehyde 3-phosphate dehydrogenase%2C NAD(P) binding domain (InterPro:IPR020828)%3B BEST Arabidopsis thaliana protein match is: glyceraldehyde 3-phosphate dehydrogenase A subunit (TAIR:AT3G26650.1)%3B Has 24704 Blast hits to 24695 proteins in 6149 species: Archae - 47%3B Bacteria - 10700%3B Metazoa - 2230%3B Fungi - 2778%3B Plants - 3753%3B Viruses - 0%3B Other Eukaryotes - 5196 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:14604444, PMID:15052571, PMID:15533878, PMID:15998247, PMID:16244144, PMID:16460663, PMID:17142483, PMID:17828791, PMID:18433503, PMID:18650403, PMID:18633119, locus:2010361; locus_type=protein_coding
AT1G12900.3	chr1:004392634	0.0	C/4392634-4393136,4393224-4393468,4393546-4393850	AT1G12900.3 CDS AT1G12900 ID=AT1G12900.3; Parent=AT1G12900; Name=AT1G12900.3; Note=glyceraldehyde 3-phosphate dehydrogenase A subunit 2; conf_class=2; symbol=GAPA-2; full_name=glyceraldehyde 3-phosphate dehydrogenase A subunit 2; computational_description=glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (GAPA-2)%3B FUNCTIONS IN: NAD or NADH binding%2C glyceraldehyde-3-phosphate dehydrogenase activity%3B INVOLVED IN: oxidation reduction%2C glycolysis%2C glucose metabolic process%3B LOCATED IN: apoplast%2C chloroplast stroma%2C chloroplast%2C membrane%2C chloroplast envelope%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase subfamily (InterPro:IPR000173)%2C Glyceraldehyde 3-phosphate dehydrogenase family (InterPro:IPR020831)%2C Glyceraldehyde-3-phosphate dehydrogenase%2C type I (InterPro:IPR006424)%2C Glyceraldehyde 3-phosphate dehydrogenase%2C active site (InterPro:IPR020830)%2C Glyceraldehyde 3-phosphate dehydrogenase%2C catalytic domain (InterPro:IPR020829)%2C Glyceraldehyde 3-phosphate dehydrogenase%2C catalytic domain%2C subgroup (InterPro:IPR020832)%2C Glyceraldehyde 3-phosphate dehydrogenase%2C NAD(P) binding domain (InterPro:IPR020828)%3B BEST Arabidopsis thaliana protein match is: glyceraldehyde 3-phosphate dehydrogenase A subunit (TAIR:AT3G26650.1)%3B Has 24704 Blast hits to 24695 proteins in 6149 species: Archae - 47%3B Bacteria - 10700%3B Metazoa - 2230%3B Fungi - 2778%3B Plants - 3753%3B Viruses - 0%3B Other Eukaryotes - 5196 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:14604444, PMID:15052571, PMID:15533878, PMID:15998247, PMID:16244144, PMID:16460663, PMID:17142483, PMID:17828791, PMID:18433503, PMID:18650403, PMID:18633119, locus:2010361; locus_type=protein_coding
AT1G12900.4	chr1:004392634	0.0	C/4392634-4393136,4393224-4393468,4393546-4393850	AT1G12900.4 CDS AT1G12900 ID=AT1G12900.4; Parent=AT1G12900; Name=AT1G12900.4; Note=glyceraldehyde 3-phosphate dehydrogenase A subunit 2; conf_class=3; symbol=GAPA-2; full_name=glyceraldehyde 3-phosphate dehydrogenase A subunit 2; computational_description=glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (GAPA-2)%3B FUNCTIONS IN: NAD or NADH binding%2C glyceraldehyde-3-phosphate dehydrogenase activity%3B INVOLVED IN: oxidation reduction%2C glycolysis%2C glucose metabolic process%3B LOCATED IN: apoplast%2C chloroplast stroma%2C chloroplast%2C membrane%2C chloroplast envelope%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase subfamily (InterPro:IPR000173)%2C Glyceraldehyde 3-phosphate dehydrogenase family (InterPro:IPR020831)%2C Glyceraldehyde-3-phosphate dehydrogenase%2C type I (InterPro:IPR006424)%2C Glyceraldehyde 3-phosphate dehydrogenase%2C active site (InterPro:IPR020830)%2C Glyceraldehyde 3-phosphate dehydrogenase%2C catalytic domain (InterPro:IPR020829)%2C Glyceraldehyde 3-phosphate dehydrogenase%2C catalytic domain%2C subgroup (InterPro:IPR020832)%2C Glyceraldehyde 3-phosphate dehydrogenase%2C NAD(P) binding domain (InterPro:IPR020828)%3B BEST Arabidopsis thaliana protein match is: glyceraldehyde 3-phosphate dehydrogenase A subunit (TAIR:AT3G26650.1)%3B Has 24704 Blast hits to 24695 proteins in 6149 species: Archae - 47%3B Bacteria - 10700%3B Metazoa - 2230%3B Fungi - 2778%3B Plants - 3753%3B Viruses - 0%3B Other Eukaryotes - 5196 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:14604444, PMID:15052571, PMID:15533878, PMID:15998247, PMID:16244144, PMID:16460663, PMID:17142483, PMID:17828791, PMID:18433503, PMID:18650403, PMID:18633119, locus:2010361; locus_type=protein_coding
AT1G12900.5	chr1:004392634	0.0	C/4392634-4393136,4393224-4393468,4393546-4393850,4394044-4394148,4394242-4394409	AT1G12900.5 CDS AT1G12900 ID=AT1G12900.5; Parent=AT1G12900; Name=AT1G12900.5; Note=glyceraldehyde 3-phosphate dehydrogenase A subunit 2; symbol=GAPA-2; full_name=glyceraldehyde 3-phosphate dehydrogenase A subunit 2; computational_description=glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (GAPA-2)%3B FUNCTIONS IN: NAD or NADH binding%2C glyceraldehyde-3-phosphate dehydrogenase activity%3B INVOLVED IN: oxidation reduction%2C glycolysis%2C glucose metabolic process%3B LOCATED IN: apoplast%2C chloroplast stroma%2C chloroplast%2C membrane%2C chloroplast envelope%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase subfamily (InterPro:IPR000173)%2C Glyceraldehyde 3-phosphate dehydrogenase family (InterPro:IPR020831)%2C Glyceraldehyde-3-phosphate dehydrogenase%2C type I (InterPro:IPR006424)%2C Glyceraldehyde 3-phosphate dehydrogenase%2C active site (InterPro:IPR020830)%2C Glyceraldehyde 3-phosphate dehydrogenase%2C catalytic domain (InterPro:IPR020829)%2C Glyceraldehyde 3-phosphate dehydrogenase%2C catalytic domain%2C subgroup (InterPro:IPR020832)%2C Glyceraldehyde 3-phosphate dehydrogenase%2C NAD(P) binding domain (InterPro:IPR020828)%3B BEST Arabidopsis thaliana protein match is: glyceraldehyde 3-phosphate dehydrogenase A subunit (TAIR:AT3G26650.1)%3B Has 24704 Blast hits to 24695 proteins in 6149 species: Archae - 47%3B Bacteria - 10700%3B Metazoa - 2230%3B Fungi - 2778%3B Plants - 3753%3B Viruses - 0%3B Other Eukaryotes - 5196 (source: NCBI BLink).; Dbxref=PMID:14576160, PMID:14604444, PMID:15052571, PMID:15533878, PMID:15998247, PMID:16244144, PMID:16460663, PMID:17142483, PMID:17828791, PMID:18433503, PMID:18650403, PMID:18633119, locus:2010361; locus_type=protein_coding
AT1G12910.1	chr1:004395114	0.0	C/4395114-4396154	AT1G12910.1 CDS AT1G12910 ID=AT1G12910.1; Parent=AT1G12910; Name=AT1G12910.1; Note=Transducin/WD40 repeat-like superfamily protein; curator_summary=Encodes LIGHT-REGULATED WD1 (LWD1)%2C a clock proteins regulating circadian period length and photoperiodic flowering.; conf_class=1; symbol=ATAN11; Alias=LWD1, LIGHT-REGULATED WD 1; full_name=ANTHOCYANIN11; computational_description=ANTHOCYANIN11 (ATAN11)%3B CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046)%2C WD40 repeat 2 (InterPro:IPR019782)%2C WD40 repeat%2C conserved site (InterPro:IPR019775)%2C WD40-repeat-containing domain (InterPro:IPR017986)%2C WD40 repeat (InterPro:IPR001680)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C WD40 repeat%2C subgroup (InterPro:IPR019781)%3B BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G26640.1)%3B Has 4731 Blast hits to 4446 proteins in 351 species: Archae - 6%3B Bacteria - 291%3B Metazoa - 1848%3B Fungi - 1200%3B Plants - 767%3B Viruses - 0%3B Other Eukaryotes - 619 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12369624, PMID:8130799, PMID:14742877, PMID:17894874, PMID:18676661, PMID:18775970, PMID:19228327, PMID:21357491, locus:2010356; locus_type=protein_coding
AT1G12920.1	chr1:004396555	0.0	C/4396555-4397859	AT1G12920.1 CDS AT1G12920 ID=AT1G12920.1; Parent=AT1G12920; Name=AT1G12920.1; Note=eukaryotic release factor 1-2; curator_summary=Encodes a eukaryotic release factor one homolog.; conf_class=2; symbol=ERF1-2; full_name=eukaryotic release factor 1-2; computational_description=eukaryotic release factor 1-2 (ERF1-2)%3B FUNCTIONS IN: translation release factor activity%3B INVOLVED IN: translational termination%3B LOCATED IN: translation release factor complex%2C plasma membrane%3B EXPRESSED IN: leaf%3B CONTAINS InterPro DOMAIN/s: eRF1 domain 2 (InterPro:IPR005141)%2C eRF1 domain 3 (InterPro:IPR005142)%2C eRF1 domain 1 (InterPro:IPR005140)%2C Peptide chain release factor eRF1/aRF1 (InterPro:IPR004403)%3B BEST Arabidopsis thaliana protein match is: eukaryotic release factor 1-3 (TAIR:AT3G26618.1)%3B Has 1141 Blast hits to 1136 proteins in 380 species: Archae - 310%3B Bacteria - 0%3B Metazoa - 243%3B Fungi - 154%3B Plants - 143%3B Viruses - 3%3B Other Eukaryotes - 288 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15474304, PMID:16113224, PMID:16679420, PMID:19939886, PMID:21175633, locus:2010341; locus_type=protein_coding
AT1G12930.1	chr1:004398588	0.0	C/4398588-4398824,4398916-4399032,4399105-4399262,4399347-4399458,4399548-4399735,4399914-4400006,4400176-4400363,4400657-4400742,4401047-4401196,4401304-4401439,4401616-4401695,4401779-4401892,4402145-4402225,4402518-4402652,4403083-4403206,4403332-4403388,4403776-4403837,4403968-4404096,4404285-4404341,4404439-4404522,4404608-4404727,4404818-4405024,4405107-4405205,4405292-4405495	AT1G12930.1 CDS AT1G12930 ID=AT1G12930.1; Parent=AT1G12930; Name=AT1G12930.1; Note=ARM repeat superfamily protein; conf_class=4; computational_description=ARM repeat superfamily protein%3B FUNCTIONS IN: binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Exportin-1/Importin-beta-like (InterPro:IPR013598)%2C Armadillo-type fold (InterPro:IPR016024)%3B BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G62600.1)%3B Has 493 Blast hits to 488 proteins in 159 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 237%3B Fungi - 137%3B Plants - 74%3B Viruses - 0%3B Other Eukaryotes - 45 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:12620976, PMID:14523572, PMID:16359384, locus:2010381; locus_type=protein_coding
AT1TE14310	chr1:004405694	0.0	C/4405694-4405995	AT1TE14310 transposable_element AT1TE14310 ID=AT1TE14310; Name=AT1TE14310; Alias=META1
AT1TE14315	chr1:004405996	0.0	C/4405996-4409516,4409512-4411119	AT1TE14315 transposable_element AT1TE14315 ID=AT1TE14315; Name=AT1TE14315; Alias=META1
AT1G12935.1	chr1:004406318	0.0	C/4406318-4406746	AT1G12935.1 CDS AT1G12935 ID=AT1G12935.1; Parent=AT1G12935; Name=AT1G12935.1; index=1; computational_description=pseudogene%2C similar to putative polyprotein%2C blastp match of 48%25 identity and 1.9e-06 P-value to GP|13957647|gb|AAK50602.1|AC084404_27|AC084404 putative polyprotein %7BOryza sativa%7D; Dbxref=locus:1006230679; Note=transposable_element_gene; locus_type=transposable_element_gene
AT1TE14320	chr1:004411120	0.0	C/4411120-4411234	AT1TE14320 transposable_element AT1TE14320 ID=AT1TE14320; Name=AT1TE14320; Alias=META1
AT1TE14325	chr1:004411795	0.0	W/4411795-4411881	AT1TE14325 transposable_element AT1TE14325 ID=AT1TE14325; Name=AT1TE14325; Alias=ATLINE1_3A
AT1TE14330	chr1:004413086	0.0	W/4413086-4413210	AT1TE14330 transposable_element AT1TE14330 ID=AT1TE14330; Name=AT1TE14330; Alias=ATREP5
AT1TE14335	chr1:004413215	0.0	C/4413215-4414712	AT1TE14335 transposable_element AT1TE14335 ID=AT1TE14335; Name=AT1TE14335; Alias=ATREP10D
AT1TE14340	chr1:004414713	0.0	W/4414713-4414908	AT1TE14340 transposable_element AT1TE14340 ID=AT1TE14340; Name=AT1TE14340; Alias=ATREP15
AT1TE14345	chr1:004414909	0.0	W/4414909-4414953	AT1TE14345 transposable_element AT1TE14345 ID=AT1TE14345; Name=AT1TE14345; Alias=HELITRONY1E
AT1TE14350	chr1:004414959	0.0	W/4414959-4415610	AT1TE14350 transposable_element AT1TE14350 ID=AT1TE14350; Name=AT1TE14350; Alias=ATREP5
AT1TE14355	chr1:004415611	0.0	W/4415611-4415742	AT1TE14355 transposable_element AT1TE14355 ID=AT1TE14355; Name=AT1TE14355; Alias=ATREP9
AT1G12940.1	chr1:004416405	0.0	W/4416405-4417091,4417442-4417917,4417992-4418337	AT1G12940.1 CDS AT1G12940 ID=AT1G12940.1; Parent=AT1G12940; Name=AT1G12940.1; Note=nitrate transporter2.5; curator_summary=member of High affinity nitrate transporter family; conf_class=2; symbol=NRT2.5; Alias=ATNRT2.5, nitrate transporter2.5; full_name=nitrate transporter2.5; computational_description=nitrate transporter2.5 (NRT2.5)%3B FUNCTIONS IN: nitrate transmembrane transporter activity%3B INVOLVED IN: transmembrane transport%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: stem%2C inflorescence meristem%3B CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701)%2C Major facilitator superfamily%2C general substrate transporter (InterPro:IPR016196)%3B BEST Arabidopsis thaliana protein match is: nitrate transporter 2:1 (TAIR:AT1G08090.1)%3B Has 4805 Blast hits to 4611 proteins in 1220 species: Archae - 64%3B Bacteria - 3952%3B Metazoa - 78%3B Fungi - 287%3B Plants - 251%3B Viruses - 0%3B Other Eukaryotes - 173 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11912225, PMID:12668777, PMID:15107992, PMID:15592750, PMID:16160849, PMID:16514542, PMID:17705847, PMID:23398541, PMID:25065551, PMID:25474587, locus:2010391; locus_type=protein_coding
AT1G12950.1	chr1:004419849	0.0	W/4419849-4420214,4420525-4421066,4421167-4421253,4421512-4421568,4421658-4421896,4421995-4422113,4422212-4422298,4422391-4422462	AT1G12950.1 CDS AT1G12950 ID=AT1G12950.1; Parent=AT1G12950; Name=AT1G12950.1; Note=root hair specific 2; conf_class=2; symbol=RSH2; full_name=root hair specific 2; computational_description=root hair specific 2 (RSH2)%3B FUNCTIONS IN: antiporter activity%2C drug transmembrane transporter activity%2C transporter activity%3B INVOLVED IN: drug transmembrane transport%2C transmembrane transport%3B LOCATED IN: membrane%3B EXPRESSED IN: sperm cell%2C root hair%2C root%3B CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528)%3B BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT3G26590.1)%3B Has 9730 Blast hits to 9684 proteins in 1960 species: Archae - 180%3B Bacteria - 6829%3B Metazoa - 143%3B Fungi - 326%3B Plants - 1351%3B Viruses - 0%3B Other Eukaryotes - 901 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16510518, PMID:17337630, PMID:19448035, PMID:22253603, locus:2010401; locus_type=protein_coding
AT1G12960.1	chr1:004422707	0.0	C/4422707-4422835,4422914-4422990,4423047-4423155	AT1G12960.1 CDS AT1G12960 ID=AT1G12960.1; Parent=AT1G12960; Name=AT1G12960.1; Note=Ribosomal protein L18e/L15 superfamily protein; conf_class=8; computational_description=Ribosomal protein L18e/L15 superfamily protein%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L18e/L15 (InterPro:IPR021131)%3B BEST Arabidopsis thaliana protein match is: Ribosomal protein L18e/L15 superfamily protein (TAIR:AT1G70600.1)%3B Has 791 Blast hits to 789 proteins in 315 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 342%3B Fungi - 162%3B Plants - 138%3B Viruses - 0%3B Other Eukaryotes - 149 (source: NCBI BLink).; conf_rating=*; Dbxref=PMID:11598216, PMID:17934214, locus:2010406; locus_type=protein_coding
AT1G12970.1	chr1:004423727	0.0	W/4423727-4424317,4424745-4424911,4424996-4425632	AT1G12970.1 CDS AT1G12970 ID=AT1G12970.1; Parent=AT1G12970; Name=AT1G12970.1; Note=plant intracellular ras group-related LRR 3; curator_summary=Encodes PIRL3%2C a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct%2C plant-specific class of intracellular LRRs that likely mediate protein interactions%2C possibly in the context of signal transduction.; conf_class=2; symbol=PIRL3; full_name=plant intracellular ras group-related LRR 3; computational_description=plant intracellular ras group-related LRR 3 (PIRL3)%3B CONTAINS InterPro DOMAIN/s: Leucine-rich repeat%2C typical subtype (InterPro:IPR003591)%2C Leucine-rich repeat (InterPro:IPR001611)%3B BEST Arabidopsis thaliana protein match is: plant intracellular ras group-related LRR 2 (TAIR:AT3G26500.1)%3B Has 74858 Blast hits to 31563 proteins in 1228 species: Archae - 19%3B Bacteria - 7206%3B Metazoa - 30749%3B Fungi - 2417%3B Plants - 30057%3B Viruses - 17%3B Other Eukaryotes - 4393 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12615942, PMID:15809230, PMID:18650403, PMID:18775970, PMID:20226671, PMID:21477822, locus:2010326; locus_type=protein_coding
AT1G12980.1	chr1:004429791	0.0	W/4429791-4430777	AT1G12980.1 CDS AT1G12980 ID=AT1G12980.1; Parent=AT1G12980; Name=AT1G12980.1; Note=Integrase-type DNA-binding superfamily protein; curator_summary=Encodes an AP2/ERF protein%2C is expressed in a subdomain of meristem stem cells%2C in lateral organ anlagen%2C and transiently in the distal domain of organ primordia. It is a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ESR1). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3%2C ATERF-4%2C ATERF-7%2C and leafy petiole. Can confer cytokinin-independent shoot formation and causes severe meristem defects when overexpressed in Arabidopsis root explants. Involved in controlling embryogenesis and embryo patterning by interaction with PHAVOLUTA.; conf_class=1; symbol=ESR1; Alias=DRN, DORNROSCHEN; full_name=ENHANCER OF SHOOT REGENERATION 1; computational_description=ENHANCER OF SHOOT REGENERATION 1 (ESR1)%3B CONTAINS InterPro DOMAIN/s: DNA-binding%2C integrase-type (InterPro:IPR016177)%2C Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (InterPro:IPR001471)%3B BEST Arabidopsis thaliana protein match is: DORNROSCHEN-like (TAIR:AT1G24590.1)%3B Has 5974 Blast hits to 5668 proteins in 251 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 4%3B Fungi - 2%3B Plants - 5957%3B Viruses - 0%3B Other Eukaryotes - 9 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11118137, PMID:11752375, PMID:11549757, PMID:12615942, PMID:16880009, PMID:17122409, PMID:17376809, PMID:18771931, PMID:18830673, PMID:19369397, PMID:19704719, PMID:21161330, PMID:21600396, PMID:21547450, PMID:21976484, PMID:23011125, PMID:22995285, locus:2031890; locus_type=protein_coding
AT1G12990.1	chr1:004433973	0.0	W/4433973-4434053,4434455-4435552	AT1G12990.1 CDS AT1G12990 ID=AT1G12990.1; Parent=AT1G12990; Name=AT1G12990.1; Note=beta-1%2C4-N-acetylglucosaminyltransferase family protein; conf_class=2; computational_description=beta-1%2C4-N-acetylglucosaminyltransferase family protein%3B FUNCTIONS IN: transferase activity%2C transferring glycosyl groups%2C acetylglucosaminyltransferase activity%3B INVOLVED IN: protein amino acid N-linked glycosylation%3B LOCATED IN: membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Glycosyl transferase%2C family 17 (InterPro:IPR006813)%3B BEST Arabidopsis thaliana protein match is: beta-1%2C4-N-acetylglucosaminyltransferase family protein (TAIR:AT1G67880.1)%3B Has 1071 Blast hits to 1070 proteins in 91 species: Archae - 0%3B Bacteria - 41%3B Metazoa - 59%3B Fungi - 34%3B Plants - 127%3B Viruses - 4%3B Other Eukaryotes - 806 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12615942, PMID:18650403, PMID:20736450, locus:2031800; locus_type=protein_coding
AT1G13000.1	chr1:004436402	0.0	C/4436402-4436503,4436593-4436628,4436716-4436790,4436885-4437005,4437081-4437137,4437223-4437336,4437432-4437533,4437631-4437746,4437817-4437900,4438028-4438132,4438207-4438356,4438451-4438562,4438662-4438693	AT1G13000.1 CDS AT1G13000 ID=AT1G13000.1; Parent=AT1G13000; Name=AT1G13000.1; Note=transmembrane protein%2C putative (DUF707); conf_class=2; computational_description=Protein of unknown function (DUF707)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT3G26440.2)%3B Has 334 Blast hits to 332 proteins in 29 species: Archae - 0%3B Bacteria - 19%3B Metazoa - 0%3B Fungi - 0%3B Plants - 306%3B Viruses - 0%3B Other Eukaryotes - 9 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12615942, PMID:15295017, locus:2031905; locus_type=protein_coding
AT1G13000.2	chr1:004436402	0.0	C/4436402-4436503,4436593-4436628,4436716-4436790,4436885-4437005,4437081-4437137,4437223-4437336,4437432-4437533,4437631-4437746,4437817-4437900,4438028-4438132,4438207-4438356,4438451-4438562,4438662-4438693	AT1G13000.2 CDS AT1G13000 ID=AT1G13000.2; Parent=AT1G13000; Name=AT1G13000.2; Note=transmembrane protein%2C putative (DUF707); conf_class=2; computational_description=Protein of unknown function (DUF707)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT3G26440.2)%3B Has 334 Blast hits to 332 proteins in 29 species: Archae - 0%3B Bacteria - 19%3B Metazoa - 0%3B Fungi - 0%3B Plants - 306%3B Viruses - 0%3B Other Eukaryotes - 9 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12615942, PMID:15295017, locus:2031905; locus_type=protein_coding
AT1G13000.4	chr1:004436402	0.0	C/4436402-4436503,4436593-4436628,4436716-4436790,4436885-4437005,4437081-4437137,4437223-4437336,4437432-4437533,4437631-4437746,4437817-4437900,4438028-4438132,4438207-4438356,4438451-4438562,4438662-4438693	AT1G13000.4 CDS AT1G13000 ID=AT1G13000.4; Parent=AT1G13000; Name=AT1G13000.4; Note=transmembrane protein%2C putative (DUF707); Dbxref=PMID:12615942, PMID:15295017, locus:2031905; computational_description=Protein of unknown function (DUF707)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT3G26440.2)%3B Has 334 Blast hits to 332 proteins in 29 species: Archae - 0%3B Bacteria - 19%3B Metazoa - 0%3B Fungi - 0%3B Plants - 306%3B Viruses - 0%3B Other Eukaryotes - 9 (source: NCBI BLink).; locus_type=protein_coding
AT1G13000.5	chr1:004436402	0.0	C/4436402-4436503,4436593-4436628,4436716-4436790,4436885-4437005,4437081-4437137,4437223-4437336,4437432-4437533,4437631-4437746,4437817-4437900,4438028-4438132,4438207-4438356,4438451-4438562,4438662-4438693	AT1G13000.5 CDS AT1G13000 ID=AT1G13000.5; Parent=AT1G13000; Name=AT1G13000.5; Note=transmembrane protein%2C putative (DUF707); Dbxref=PMID:12615942, PMID:15295017, locus:2031905; computational_description=Protein of unknown function (DUF707)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT3G26440.2)%3B Has 334 Blast hits to 332 proteins in 29 species: Archae - 0%3B Bacteria - 19%3B Metazoa - 0%3B Fungi - 0%3B Plants - 306%3B Viruses - 0%3B Other Eukaryotes - 9 (source: NCBI BLink).; locus_type=protein_coding
AT1G13000.3	chr1:004436858	0.0	C/4436858-4437005,4437081-4437137,4437223-4437336,4437432-4437533,4437631-4437746,4437817-4437900,4438028-4438132,4438207-4438356,4438451-4438562,4438662-4438693	AT1G13000.3 CDS AT1G13000 ID=AT1G13000.3; Parent=AT1G13000; Name=AT1G13000.3; Note=transmembrane protein%2C putative (DUF707); computational_description=Protein of unknown function (DUF707)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT3G26440.2)%3B Has 334 Blast hits to 332 proteins in 29 species: Archae - 0%3B Bacteria - 19%3B Metazoa - 0%3B Fungi - 0%3B Plants - 306%3B Viruses - 0%3B Other Eukaryotes - 9 (source: NCBI BLink).; Dbxref=PMID:12615942, PMID:15295017, locus:2031905; locus_type=protein_coding
AT1G13010.1	chr1:004440214	0.0	W/4440214-4440286	AT1G13010.1 tRNA AT1G13010 ID=AT1G13010.1; Parent=AT1G13010; Note=tRNA-Arg; computational_description=tRNA-Arg (anticodon: ACG); Dbxref=PMID:8980477, PMID:23066098, PMID:8980477, locus:3690474; Name=AT1G13010.1; locus_type=pre_trna
AT1G13020.1	chr1:004440927	0.0	C/4440927-4440954,4441169-4441600,4442331-4443520	AT1G13020.1 CDS AT1G13020 ID=AT1G13020.1; Parent=AT1G13020; Name=AT1G13020.1; Note=eukaryotic initiation factor 4B2; curator_summary=Encodes eIF4B2%2C eukaryotic initiation factor 4B2.; conf_class=2; symbol=EIF4B2; full_name=eukaryotic initiation factor 4B2; computational_description=eukaryotic initiation factor 4B2 (EIF4B2)%3B FUNCTIONS IN: translation initiation factor activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Plant specific eukaryotic initiation factor 4B (InterPro:IPR010433)%3B BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 4B1 (TAIR:AT3G26400.1)%3B Has 40205 Blast hits to 18564 proteins in 1251 species: Archae - 53%3B Bacteria - 12943%3B Metazoa - 12538%3B Fungi - 2660%3B Plants - 4866%3B Viruses - 455%3B Other Eukaryotes - 6690 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17521445, PMID:19493973, PMID:22639576, locus:2031795; locus_type=protein_coding
AT1G13030.1	chr1:004444284	0.0	C/4444284-4444474,4444553-4444703,4444818-4444967,4445061-4445132,4445222-4445413,4445493-4445533,4445620-4445806,4445926-4446003,4446158-4446224,4446329-4446502,4446579-4446839,4446923-4446987,4447081-4447278	AT1G13030.1 CDS AT1G13030 ID=AT1G13030.1; Parent=AT1G13030; Name=AT1G13030.1; Note=sphere organelles protein-like protein; curator_summary=Encodes a plant coilin%2C a protein that in other organisms is a major structural scaffolding protein necessary for Cajal body formation%2C composition and activity. It has been shown to bind both U1 and U1 snRNAs in vitro.; conf_class=3; Alias=Atcoilin, COILIN, coilin; computational_description=sphere organelles protein-related%3B Has 14464 Blast hits to 9695 proteins in 837 species: Archae - 14%3B Bacteria - 1320%3B Metazoa - 4989%3B Fungi - 1376%3B Plants - 652%3B Viruses - 103%3B Other Eukaryotes - 6010 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15937229, PMID:17521445, PMID:23320094, locus:2031810; locus_type=protein_coding
AT1G13040.1	chr1:004447647	0.0	W/4447647-4449200	AT1G13040.1 CDS AT1G13040 ID=AT1G13040.1; Parent=AT1G13040; Name=AT1G13040.1; Note=Pentatricopeptide repeat (PPR-like) superfamily protein; conf_class=1; computational_description=Pentatricopeptide repeat (PPR-like) superfamily protein%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: cultured cell%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G62910.1)%3B Has 55149 Blast hits to 14680 proteins in 295 species: Archae - 3%3B Bacteria - 38%3B Metazoa - 581%3B Fungi - 873%3B Plants - 52114%3B Viruses - 0%3B Other Eukaryotes - 1540 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:17521445, locus:2031825; locus_type=protein_coding
AT1G13040.2	chr1:004447647	0.0	W/4447647-4449200	AT1G13040.2 CDS AT1G13040 ID=AT1G13040.2; Parent=AT1G13040; Name=AT1G13040.2; Note=Pentatricopeptide repeat (PPR-like) superfamily protein; Dbxref=PMID:17521445, locus:2031825; computational_description=Pentatricopeptide repeat (PPR-like) superfamily protein%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: cultured cell%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G62910.1)%3B Has 55149 Blast hits to 14680 proteins in 295 species: Archae - 3%3B Bacteria - 38%3B Metazoa - 581%3B Fungi - 873%3B Plants - 52114%3B Viruses - 0%3B Other Eukaryotes - 1540 (source: NCBI BLink).; locus_type=protein_coding
AT1G13050.1	chr1:004450568	0.0	W/4450568-4451521	AT1G13050.1 CDS AT1G13050 ID=AT1G13050.1; Parent=AT1G13050; Name=AT1G13050.1; Note=proline-rich receptor-like kinase; conf_class=4; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26350.1)%3B Has 538 Blast hits to 510 proteins in 88 species: Archae - 0%3B Bacteria - 23%3B Metazoa - 81%3B Fungi - 36%3B Plants - 361%3B Viruses - 8%3B Other Eukaryotes - 29 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:14666423, PMID:17521445, locus:2031840; locus_type=protein_coding
AT1G13050.2	chr1:004450964	0.0	W/4450964-4451521	AT1G13050.2 CDS AT1G13050 ID=AT1G13050.2; Parent=AT1G13050; Name=AT1G13050.2; Note=proline-rich receptor-like kinase; conf_class=2; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26350.1)%3B Has 538 Blast hits to 510 proteins in 88 species: Archae - 0%3B Bacteria - 23%3B Metazoa - 81%3B Fungi - 36%3B Plants - 361%3B Viruses - 8%3B Other Eukaryotes - 29 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14666423, PMID:17521445, locus:2031840; locus_type=protein_coding
AT1G13050.3	chr1:004450964	0.0	W/4450964-4451521	AT1G13050.3 CDS AT1G13050 ID=AT1G13050.3; Parent=AT1G13050; Name=AT1G13050.3; Note=proline-rich receptor-like kinase; Dbxref=PMID:14666423, PMID:17521445, locus:2031840; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26350.1)%3B Has 538 Blast hits to 510 proteins in 88 species: Archae - 0%3B Bacteria - 23%3B Metazoa - 81%3B Fungi - 36%3B Plants - 361%3B Viruses - 8%3B Other Eukaryotes - 29 (source: NCBI BLink).; locus_type=protein_coding
AT1G13060.1	chr1:004452641	0.0	W/4452641-4452760,4452855-4452984,4453279-4453385,4453882-4454016,4454114-4454217,4454340-4454440,4454536-4454663	AT1G13060.1 CDS AT1G13060 ID=AT1G13060.1; Parent=AT1G13060; Name=AT1G13060.1; Note=20S proteasome beta subunit E1; curator_summary=Encodes 20S proteasome beta subunit PBE1 (PBE1).; conf_class=2; symbol=PBE1; full_name=20S proteasome beta subunit E1; computational_description=20S proteasome beta subunit E1 (PBE1)%3B FUNCTIONS IN: peptidase activity%2C endopeptidase activity%2C threonine-type endopeptidase activity%3B INVOLVED IN: response to cadmium ion%2C ubiquitin-dependent protein catabolic process%3B LOCATED IN: proteasome core complex%2C proteasome complex%3B EXPRESSED IN: guard cell%2C cultured cell%2C pollen tube%2C leaf%3B EXPRESSED DURING: seed development stages%3B CONTAINS InterPro DOMAIN/s: Proteasome%2C beta-type subunit%2C conserved site (InterPro:IPR016050)%2C Peptidase T1A%2C proteasome beta-subunit (InterPro:IPR000243)%2C Proteasome%2C subunit alpha/beta (InterPro:IPR001353)%3B BEST Arabidopsis thaliana protein match is: N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (TAIR:AT3G26340.1)%3B Has 6463 Blast hits to 6458 proteins in 614 species: Archae - 814%3B Bacteria - 515%3B Metazoa - 2076%3B Fungi - 1348%3B Plants - 839%3B Viruses - 0%3B Other Eukaryotes - 871 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10363660, PMID:9611183, PMID:9373170, PMID:13677466, PMID:14500793, PMID:12952558, PMID:16055689, PMID:16502469, PMID:17028202, PMID:17521445, PMID:18650403, PMID:18775970, PMID:20118269, PMID:20516081, PMID:23289948, locus:2031855; locus_type=protein_coding
AT1G13060.2	chr1:004452641	0.0	W/4452641-4452760,4452855-4452984,4453044-4453115,4453279-4453385,4453882-4454016,4454114-4454217,4454340-4454440,4454536-4454663	AT1G13060.2 CDS AT1G13060 ID=AT1G13060.2; Parent=AT1G13060; Name=AT1G13060.2; Note=20S proteasome beta subunit E1; curator_summary=Encodes 20S proteasome beta subunit PBE1 (PBE1).; conf_class=6; symbol=PBE1; full_name=20S proteasome beta subunit E1; computational_description=20S proteasome beta subunit E1 (PBE1)%3B FUNCTIONS IN: peptidase activity%2C endopeptidase activity%2C threonine-type endopeptidase activity%3B INVOLVED IN: response to cadmium ion%2C ubiquitin-dependent protein catabolic process%3B LOCATED IN: proteasome core complex%2C proteasome complex%3B EXPRESSED IN: guard cell%2C cultured cell%2C pollen tube%2C leaf%3B EXPRESSED DURING: seed development stages%3B CONTAINS InterPro DOMAIN/s: Proteasome%2C beta-type subunit%2C conserved site (InterPro:IPR016050)%2C Peptidase T1A%2C proteasome beta-subunit (InterPro:IPR000243)%2C Proteasome%2C subunit alpha/beta (InterPro:IPR001353)%3B BEST Arabidopsis thaliana protein match is: N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (TAIR:AT3G26340.1)%3B Has 6463 Blast hits to 6458 proteins in 614 species: Archae - 814%3B Bacteria - 515%3B Metazoa - 2076%3B Fungi - 1348%3B Plants - 839%3B Viruses - 0%3B Other Eukaryotes - 871 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:10363660, PMID:9611183, PMID:9373170, PMID:13677466, PMID:14500793, PMID:12952558, PMID:16055689, PMID:16502469, PMID:17028202, PMID:17521445, PMID:18650403, PMID:18775970, PMID:20118269, PMID:20516081, PMID:23289948, locus:2031855; locus_type=protein_coding
AT1G13060.3	chr1:004452641	0.0	W/4452641-4452760,4452855-4452984,4453044-4453115,4453279-4453385,4453882-4454016,4454114-4454217,4454340-4454440,4454536-4454663	AT1G13060.3 CDS AT1G13060 ID=AT1G13060.3; Parent=AT1G13060; Name=AT1G13060.3; Note=20S proteasome beta subunit E1; symbol=PBE1; full_name=20S proteasome beta subunit E1; Dbxref=PMID:10363660, PMID:9611183, PMID:9373170, PMID:13677466, PMID:14500793, PMID:12952558, PMID:16055689, PMID:16502469, PMID:17028202, PMID:17521445, PMID:18650403, PMID:18775970, PMID:20118269, PMID:20516081, PMID:23289948, locus:2031855; curator_summary=Encodes 20S proteasome beta subunit PBE1 (PBE1).; computational_description=20S proteasome beta subunit E1 (PBE1)%3B FUNCTIONS IN: peptidase activity%2C endopeptidase activity%2C threonine-type endopeptidase activity%3B INVOLVED IN: response to cadmium ion%2C ubiquitin-dependent protein catabolic process%3B LOCATED IN: proteasome core complex%2C proteasome complex%3B EXPRESSED IN: guard cell%2C cultured cell%2C pollen tube%2C leaf%3B EXPRESSED DURING: seed development stages%3B CONTAINS InterPro DOMAIN/s: Proteasome%2C beta-type subunit%2C conserved site (InterPro:IPR016050)%2C Peptidase T1A%2C proteasome beta-subunit (InterPro:IPR000243)%2C Proteasome%2C subunit alpha/beta (InterPro:IPR001353)%3B BEST Arabidopsis thaliana protein match is: N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (TAIR:AT3G26340.1)%3B Has 6463 Blast hits to 6458 proteins in 614 species: Archae - 814%3B Bacteria - 515%3B Metazoa - 2076%3B Fungi - 1348%3B Plants - 839%3B Viruses - 0%3B Other Eukaryotes - 871 (source: NCBI BLink).; locus_type=protein_coding
AT1G13070.1	chr1:004455427	0.0	W/4455427-4457231	AT1G13070.1 pseudogenic_transcript AT1G13070 ID=AT1G13070.1; Parent=AT1G13070; Name=AT1G13070.1; curator_summary=putative cytochrome P450; symbol=CYP71B27; Note=pseudogene; full_name=cytochrome P450%2C family 71%2C subfamily B%2C polypeptide 27; computational_description=pseudogene%2C putative cytochrome P450 monooxygenase%2C strong similarity to gb|D78605 cytochrome P450 monooxygenase from Arabidopsis thaliana and is a member of the PF|00067 Cytochrome P450 family%3B blastp match of 57%25 identity and 4.7e-113 P-value to GP|16507125|gb|AAL24049.1|AF426451_1|AF426451 cytochrome P450 %7BCitrus sinensis%7D; Dbxref=PMID:16258015, PMID:16258015, locus:2031865; locus_type=pseudogene
AT1G13070.2	chr1:004455427	0.0	W/4455427-4457231	AT1G13070.2 pseudogenic_transcript AT1G13070 ID=AT1G13070.2; Parent=AT1G13070; Name=AT1G13070.2; symbol=CYP71B27; Note=pseudogene; full_name=cytochrome P450%2C family 71%2C subfamily B%2C polypeptide 27; curator_summary=putative cytochrome P450; computational_description=pseudogene%2C putative cytochrome P450 monooxygenase%2C strong similarity to gb|D78605 cytochrome P450 monooxygenase from Arabidopsis thaliana and is a member of the PF|00067 Cytochrome P450 family%3B blastp match of 57%25 identity and 4.7e-113 P-value to GP|16507125|gb|AAL24049.1|AF426451_1|AF426451 cytochrome P450 %7BCitrus sinensis%7D; Dbxref=PMID:16258015, PMID:16258015, locus:2031865; locus_type=pseudogene
AT1G04987.1	chr1:004457271	0.0	C/4457271-4457513	AT1G04987.1 lnc_RNA AT1G04987 ID=AT1G04987.1; Parent=AT1G04987; Name=AT1G04987.1; locus_type=long_noncoding_rna
AT1G13080.1	chr1:004459212	0.0	W/4459212-4460108,4460196-4460807	AT1G13080.1 CDS AT1G13080 ID=AT1G13080.1; Parent=AT1G13080; Name=AT1G13080.1; Note=cytochrome P450%2C family 71%2C subfamily B%2C polypeptide 2; curator_summary=cytochrome P450 monooxygenase; conf_class=2; symbol=CYP71B2; full_name=cytochrome P450%2C family 71%2C subfamily B%2C polypeptide 2; computational_description=cytochrome P450%2C family 71%2C subfamily B%2C polypeptide 2 (CYP71B2)%3B FUNCTIONS IN: electron carrier activity%2C monooxygenase activity%2C iron ion binding%2C oxygen binding%2C heme binding%3B INVOLVED IN: response to cyclopentenone%2C heat acclimation%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128)%2C Cytochrome P450%2C E-class%2C group I (InterPro:IPR002401)%2C Cytochrome P450%2C conserved site (InterPro:IPR017972)%3B BEST Arabidopsis thaliana protein match is: cytochrome P450%2C family 71%2C subfamily B%2C polypeptide 20 (TAIR:AT3G26180.1)%3B Has 33312 Blast hits to 33067 proteins in 1707 species: Archae - 47%3B Bacteria - 3450%3B Metazoa - 12035%3B Fungi - 6950%3B Plants - 9630%3B Viruses - 3%3B Other Eukaryotes - 1197 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9620263, PMID:12805628, PMID:15546358, PMID:16258015, PMID:16489130, PMID:16807682, PMID:18334669, PMID:18650403, PMID:18849477, locus:2031900; locus_type=protein_coding
AT1G13080.2	chr1:004459493	0.0	W/4459493-4459569,4459643-4460108,4460196-4460807	AT1G13080.2 CDS AT1G13080 ID=AT1G13080.2; Parent=AT1G13080; Name=AT1G13080.2; Note=cytochrome P450%2C family 71%2C subfamily B%2C polypeptide 2; curator_summary=cytochrome P450 monooxygenase; conf_class=1; symbol=CYP71B2; full_name=cytochrome P450%2C family 71%2C subfamily B%2C polypeptide 2; computational_description=cytochrome P450%2C family 71%2C subfamily B%2C polypeptide 2 (CYP71B2)%3B FUNCTIONS IN: electron carrier activity%2C monooxygenase activity%2C iron ion binding%2C oxygen binding%2C heme binding%3B INVOLVED IN: response to cyclopentenone%2C heat acclimation%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128)%2C Cytochrome P450%2C E-class%2C group I (InterPro:IPR002401)%2C Cytochrome P450%2C conserved site (InterPro:IPR017972)%3B BEST Arabidopsis thaliana protein match is: cytochrome P450%2C family 71%2C subfamily B%2C polypeptide 20 (TAIR:AT3G26180.1)%3B Has 33312 Blast hits to 33067 proteins in 1707 species: Archae - 47%3B Bacteria - 3450%3B Metazoa - 12035%3B Fungi - 6950%3B Plants - 9630%3B Viruses - 3%3B Other Eukaryotes - 1197 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:9620263, PMID:12805628, PMID:15546358, PMID:16258015, PMID:16489130, PMID:16807682, PMID:18334669, PMID:18650403, PMID:18849477, locus:2031900; locus_type=protein_coding
AT1TE14500	chr1:004460813	0.0	W/4460813-4461312	AT1TE14500 transposable_element AT1TE14500 ID=AT1TE14500; Name=AT1TE14500; Alias=ATREP15
AT1G13090.1	chr1:004461846	0.0	W/4461846-4462742	AT1G13090.1 CDS AT1G13090 ID=AT1G13090.1; Parent=AT1G13090; Name=AT1G13090.1; Note=cytochrome P450%2C family 71%2C subfamily B%2C polypeptide 28; curator_summary=putative cytochrome P450; conf_class=2; symbol=CYP71B28; full_name=cytochrome P450%2C family 71%2C subfamily B%2C polypeptide 28; computational_description=cytochrome P450%2C family 71%2C subfamily B%2C polypeptide 28 (CYP71B28)%3B FUNCTIONS IN: electron carrier activity%2C monooxygenase activity%2C iron ion binding%2C oxygen binding%2C heme binding%3B INVOLVED IN: oxidation reduction%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128)%2C Cytochrome P450%2C E-class%2C group I (InterPro:IPR002401)%2C Cytochrome P450%2C conserved site (InterPro:IPR017972)%3B BEST Arabidopsis thaliana protein match is: Cytochrome P450 superfamily protein (TAIR:AT3G26830.1)%3B Has 32313 Blast hits to 32069 proteins in 1664 species: Archae - 46%3B Bacteria - 2999%3B Metazoa - 11820%3B Fungi - 6857%3B Plants - 9495%3B Viruses - 0%3B Other Eukaryotes - 1096 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12535341, PMID:14690510, PMID:16258012, PMID:18650403, locus:2031915; locus_type=protein_coding
AT1G13090.2	chr1:004461846	0.0	W/4461846-4462730,4462813-4463400	AT1G13090.2 CDS AT1G13090 ID=AT1G13090.2; Parent=AT1G13090; Name=AT1G13090.2; Note=cytochrome P450%2C family 71%2C subfamily B%2C polypeptide 28; symbol=CYP71B28; full_name=cytochrome P450%2C family 71%2C subfamily B%2C polypeptide 28; Dbxref=PMID:12535341, PMID:14690510, PMID:16258012, PMID:18650403, locus:2031915; curator_summary=putative cytochrome P450; computational_description=cytochrome P450%2C family 71%2C subfamily B%2C polypeptide 28 (CYP71B28)%3B FUNCTIONS IN: electron carrier activity%2C monooxygenase activity%2C iron ion binding%2C oxygen binding%2C heme binding%3B INVOLVED IN: oxidation reduction%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128)%2C Cytochrome P450%2C E-class%2C group I (InterPro:IPR002401)%2C Cytochrome P450%2C conserved site (InterPro:IPR017972)%3B BEST Arabidopsis thaliana protein match is: Cytochrome P450 superfamily protein (TAIR:AT3G26830.1)%3B Has 32313 Blast hits to 32069 proteins in 1664 species: Archae - 46%3B Bacteria - 2999%3B Metazoa - 11820%3B Fungi - 6857%3B Plants - 9495%3B Viruses - 0%3B Other Eukaryotes - 1096 (source: NCBI BLink).; locus_type=protein_coding
AT1G13100.1	chr1:004463983	0.0	W/4463983-4464867,4464951-4465538	AT1G13100.1 CDS AT1G13100 ID=AT1G13100.1; Parent=AT1G13100; Name=AT1G13100.1; Note=cytochrome P450%2C family 71%2C subfamily B%2C polypeptide 29; curator_summary=putative cytochrome P450; conf_class=4; symbol=CYP71B29; full_name=cytochrome P450%2C family 71%2C subfamily B%2C polypeptide 29; computational_description=cytochrome P450%2C family 71%2C subfamily B%2C polypeptide 29 (CYP71B29)%3B FUNCTIONS IN: electron carrier activity%2C monooxygenase activity%2C iron ion binding%2C oxygen binding%2C heme binding%3B INVOLVED IN: oxidation reduction%3B EXPRESSED IN: cotyledon%2C hypocotyl%2C root%3B CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128)%2C Cytochrome P450%2C E-class%2C group I (InterPro:IPR002401)%2C Cytochrome P450%2C conserved site (InterPro:IPR017972)%3B BEST Arabidopsis thaliana protein match is: cytochrome P450%2C family 71%2C subfamily B%2C polypeptide 28 (TAIR:AT1G13090.1)%3B Has 32382 Blast hits to 32119 proteins in 1696 species: Archae - 46%3B Bacteria - 3118%3B Metazoa - 11830%3B Fungi - 6731%3B Plants - 9528%3B Viruses - 0%3B Other Eukaryotes - 1129 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:15632092, locus:2031805; locus_type=protein_coding
AT1G13110.1	chr1:004467272	0.0	W/4467272-4468174,4468246-4468857	AT1G13110.1 CDS AT1G13110 ID=AT1G13110.1; Parent=AT1G13110; Name=AT1G13110.1; Note=cytochrome P450%2C family 71 subfamily B%2C polypeptide 7; curator_summary=member of CYP71B; conf_class=2; symbol=CYP71B7; full_name=cytochrome P450%2C family 71 subfamily B%2C polypeptide 7; computational_description=cytochrome P450%2C family 71 subfamily B%2C polypeptide 7 (CYP71B7)%3B FUNCTIONS IN: electron carrier activity%2C monooxygenase activity%2C iron ion binding%2C oxygen binding%2C heme binding%3B INVOLVED IN: oxidation reduction%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128)%2C Cytochrome P450%2C E-class%2C group I (InterPro:IPR002401)%2C Cytochrome P450%2C conserved site (InterPro:IPR017972)%3B BEST Arabidopsis thaliana protein match is: cytochrome P450%2C family 71%2C subfamily B%2C polypeptide 23 (TAIR:AT3G26210.1)%3B Has 32794 Blast hits to 32517 proteins in 1680 species: Archae - 46%3B Bacteria - 3235%3B Metazoa - 12124%3B Fungi - 6721%3B Plants - 9540%3B Viruses - 0%3B Other Eukaryotes - 1128 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9143359, PMID:12805628, PMID:15148388, PMID:16258015, PMID:16258012, PMID:18552355, locus:2031820; locus_type=protein_coding
AT1G13120.1	chr1:004469334	0.0	C/4469334-4469621,4469701-4469829,4469917-4469985,4470071-4470154,4470237-4470305,4470499-4470580,4470886-4470956,4471039-4471148,4471270-4471619,4471747-4471895,4472002-4472113,4472214-4472369,4472492-4472656,4472774-4472775	AT1G13120.1 CDS AT1G13120 ID=AT1G13120.1; Parent=AT1G13120; Name=AT1G13120.1; Note=nucleoporin GLE1-like protein; conf_class=1; symbol=GLE1; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: embryo development ending in seed dormancy%3B LOCATED IN: nuclear pore%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: GLE1-like (InterPro:IPR012476)%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G05523.1)%3B Has 36705 Blast hits to 24548 proteins in 2114 species: Archae - 242%3B Bacteria - 8583%3B Metazoa - 12421%3B Fungi - 3107%3B Plants - 1525%3B Viruses - 221%3B Other Eukaryotes - 10606 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15266054, PMID:18775970, PMID:21189294, PMID:22898497, PMID:24384931, locus:2031835; locus_type=protein_coding
AT1G13130.1	chr1:004474726	0.0	W/4474726-4475151,4476425-4476672,4476752-4477272,4477357-4477820	AT1G13130.1 CDS AT1G13130 ID=AT1G13130.1; Parent=AT1G13130; Name=AT1G13130.1; Note=Cellulase (glycosyl hydrolase family 5) protein; conf_class=2; computational_description=Cellulase (glycosyl hydrolase family 5) protein%3B FUNCTIONS IN: cation binding%2C hydrolase activity%2C hydrolyzing O-glycosyl compounds%2C catalytic activity%3B INVOLVED IN: carbohydrate metabolic process%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 8 plant structures%3B EXPRESSED DURING: 4 anthesis%2C C globular stage%2C F mature embryo stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%3B CONTAINS InterPro DOMAIN/s: Ricin B-related lectin (InterPro:IPR008997)%2C Ricin B lectin (InterPro:IPR000772)%2C Glycoside hydrolase%2C catalytic core (InterPro:IPR017853)%2C Glycoside hydrolase%2C family 5 (InterPro:IPR001547)%2C Glycoside hydrolase%2C subgroup%2C catalytic core (InterPro:IPR013781)%3B BEST Arabidopsis thaliana protein match is: Cellulase (glycosyl hydrolase family 5) protein (TAIR:AT3G26140.1)%3B Has 343 Blast hits to 335 proteins in 115 species: Archae - 2%3B Bacteria - 129%3B Metazoa - 0%3B Fungi - 78%3B Plants - 115%3B Viruses - 0%3B Other Eukaryotes - 19 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16920880, PMID:20736450, locus:2031850; locus_type=protein_coding
AT1G13140.1	chr1:004478667	0.0	C/4478667-4480271	AT1G13140.1 CDS AT1G13140 ID=AT1G13140.1; Parent=AT1G13140; Name=AT1G13140.1; Note=cytochrome P450%2C family 86%2C subfamily C%2C polypeptide 3; curator_summary=member of CYP86C; conf_class=1; symbol=CYP86C3; full_name=cytochrome P450%2C family 86%2C subfamily C%2C polypeptide 3; computational_description=cytochrome P450%2C family 86%2C subfamily C%2C polypeptide 3 (CYP86C3)%3B FUNCTIONS IN: electron carrier activity%2C monooxygenase activity%2C iron ion binding%2C oxygen binding%2C heme binding%3B INVOLVED IN: oxidation reduction%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: petal%2C leaf whorl%2C cauline leaf%2C sepal%2C flower%3B EXPRESSED DURING: 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128)%2C Cytochrome P450%2C E-class%2C group I (InterPro:IPR002401)%2C Cytochrome P450%2C conserved site (InterPro:IPR017972)%3B BEST Arabidopsis thaliana protein match is: cytochrome P450%2C family 86%2C subfamily C%2C polypeptide 4 (TAIR:AT1G13150.1)%3B Has 28771 Blast hits to 28679 proteins in 1489 species: Archae - 44%3B Bacteria - 2446%3B Metazoa - 10818%3B Fungi - 6442%3B Plants - 7961%3B Viruses - 3%3B Other Eukaryotes - 1057 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:18433503, PMID:20118226, locus:2031870; locus_type=protein_coding
AT1G13140.2	chr1:004478667	0.0	C/4478667-4479433,4479512-4480271	AT1G13140.2 CDS AT1G13140 ID=AT1G13140.2; Parent=AT1G13140; Name=AT1G13140.2; Note=cytochrome P450%2C family 86%2C subfamily C%2C polypeptide 3; curator_summary=member of CYP86C; conf_class=2; symbol=CYP86C3; full_name=cytochrome P450%2C family 86%2C subfamily C%2C polypeptide 3; computational_description=cytochrome P450%2C family 86%2C subfamily C%2C polypeptide 3 (CYP86C3)%3B FUNCTIONS IN: electron carrier activity%2C monooxygenase activity%2C iron ion binding%2C oxygen binding%2C heme binding%3B INVOLVED IN: oxidation reduction%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: petal%2C leaf whorl%2C cauline leaf%2C sepal%2C flower%3B EXPRESSED DURING: 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128)%2C Cytochrome P450%2C E-class%2C group I (InterPro:IPR002401)%2C Cytochrome P450%2C conserved site (InterPro:IPR017972)%3B BEST Arabidopsis thaliana protein match is: cytochrome P450%2C family 86%2C subfamily C%2C polypeptide 4 (TAIR:AT1G13150.1)%3B Has 28771 Blast hits to 28679 proteins in 1489 species: Archae - 44%3B Bacteria - 2446%3B Metazoa - 10818%3B Fungi - 6442%3B Plants - 7961%3B Viruses - 3%3B Other Eukaryotes - 1057 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18433503, PMID:20118226, locus:2031870; locus_type=protein_coding
AT1G13143.1	chr1:004479133	0.0	W/4479133-4479273,4479451-4479612	AT1G13143.1 CDS AT1G13143 ID=AT1G13143.1; Parent=AT1G13143; Name=AT1G13143.1; Note=hypothetical protein; locus_type=protein_coding
AT1G13145.1	chr1:004480860	0.0	W/4480860-4481334	AT1G13145.1 pseudogenic_transcript AT1G13145 ID=AT1G13145.1; Parent=AT1G13145; Name=AT1G13145.1; index=1; Note=pseudogene; curator_summary=pseudogene of unknown protein; computational_description=expressed protein; Dbxref=locus:504956228, locus:504956228; locus_type=pseudogene
AT1G13150.1	chr1:004481995	0.0	C/4481995-4483584	AT1G13150.1 CDS AT1G13150 ID=AT1G13150.1; Parent=AT1G13150; Name=AT1G13150.1; Note=cytochrome P450%2C family 86%2C subfamily C%2C polypeptide 4; curator_summary=member of CYP86C; conf_class=1; symbol=CYP86C4; full_name=cytochrome P450%2C family 86%2C subfamily C%2C polypeptide 4; computational_description=cytochrome P450%2C family 86%2C subfamily C%2C polypeptide 4 (CYP86C4)%3B FUNCTIONS IN: electron carrier activity%2C monooxygenase activity%2C iron ion binding%2C oxygen binding%2C heme binding%3B INVOLVED IN: oxidation reduction%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: petal%2C leaf whorl%2C sepal%2C flower%3B EXPRESSED DURING: 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128)%2C Cytochrome P450%2C E-class%2C group I (InterPro:IPR002401)%2C Cytochrome P450%2C conserved site (InterPro:IPR017972)%3B BEST Arabidopsis thaliana protein match is: cytochrome P450%2C family 86%2C subfamily C%2C polypeptide 3 (TAIR:AT1G13140.1)%3B Has 28361 Blast hits to 28269 proteins in 1476 species: Archae - 44%3B Bacteria - 2374%3B Metazoa - 10721%3B Fungi - 6214%3B Plants - 7984%3B Viruses - 3%3B Other Eukaryotes - 1021 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16258015, PMID:18433503, locus:2031885; locus_type=protein_coding
AT1G13160.1	chr1:004484634	0.0	W/4484634-4485038,4485168-4485335,4485425-4485558,4485651-4485789,4486018-4486164,4486242-4486304,4486430-4486525,4486598-4486657,4486738-4486812,4486906-4486959,4487062-4487163,4487246-4487860,4487948-4488046,4488131-4488388	AT1G13160.1 CDS AT1G13160 ID=AT1G13160.1; Parent=AT1G13160; Name=AT1G13160.1; Note=ARM repeat superfamily protein; conf_class=1; computational_description=ARM repeat superfamily protein%3B FUNCTIONS IN: binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Domain of unknown function%2C nucleolar NUC130/133%2C N-terminal (InterPro:IPR012977)%2C Armadillo-type fold (InterPro:IPR016024)%2C SDA1 (InterPro:IPR007949)%3B BEST Arabidopsis thaliana protein match is: SDA1 family protein (TAIR:AT4G31520.1)%3B Has 29206 Blast hits to 13573 proteins in 931 species: Archae - 207%3B Bacteria - 10267%3B Metazoa - 6952%3B Fungi - 3668%3B Plants - 1163%3B Viruses - 549%3B Other Eukaryotes - 6400 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:2031895; locus_type=protein_coding
AT1TE14590	chr1:004487465	0.0	C/4487465-4487576	AT1TE14590 transposable_element AT1TE14590 ID=AT1TE14590; Name=AT1TE14590; Alias=VANDAL3
AT1G13170.1	chr1:004488826	0.0	C/4488826-4489014,4489115-4489459,4489532-4489840,4489996-4490151,4490330-4490790,4490951-4491035,4491281-4491634,4491727-4492278	AT1G13170.1 CDS AT1G13170 ID=AT1G13170.1; Parent=AT1G13170; Name=AT1G13170.1; Note=OSBP(oxysterol binding protein)-related protein 1D; conf_class=1; symbol=ORP1D; full_name=OSBP(oxysterol binding protein)-related protein 1D; computational_description=OSBP(oxysterol binding protein)-related protein 1D (ORP1D)%3B FUNCTIONS IN: oxysterol binding%3B INVOLVED IN: steroid metabolic process%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993)%2C Oxysterol-binding protein (InterPro:IPR000648)%2C Pleckstrin homology (InterPro:IPR001849)%3B BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 1C (TAIR:AT4G08180.1)%3B Has 2556 Blast hits to 2421 proteins in 215 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1277%3B Fungi - 705%3B Plants - 299%3B Viruses - 0%3B Other Eukaryotes - 275 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15358268, PMID:16897474, PMID:20736450, locus:2031910; locus_type=protein_coding
AT1G13170.2	chr1:004488826	0.0	C/4488826-4489014,4489115-4489459,4489532-4489840,4489996-4490151,4490267-4490790,4490951-4491035,4491281-4491634,4491727-4492278	AT1G13170.2 CDS AT1G13170 ID=AT1G13170.2; Parent=AT1G13170; Name=AT1G13170.2; Note=OSBP(oxysterol binding protein)-related protein 1D; conf_class=4; symbol=ORP1D; full_name=OSBP(oxysterol binding protein)-related protein 1D; computational_description=OSBP(oxysterol binding protein)-related protein 1D (ORP1D)%3B FUNCTIONS IN: oxysterol binding%3B INVOLVED IN: steroid metabolic process%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993)%2C Oxysterol-binding protein (InterPro:IPR000648)%2C Pleckstrin homology (InterPro:IPR001849)%3B BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 1C (TAIR:AT4G08180.1)%3B Has 2556 Blast hits to 2421 proteins in 215 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1277%3B Fungi - 705%3B Plants - 299%3B Viruses - 0%3B Other Eukaryotes - 275 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:15358268, PMID:16897474, PMID:20736450, locus:2031910; locus_type=protein_coding
AT1TE14600	chr1:004493275	0.0	W/4493275-4493928	AT1TE14600 transposable_element AT1TE14600 ID=AT1TE14600; Name=AT1TE14600; Alias=ATREP3
AT1G13180.1	chr1:004495394	0.0	W/4495394-4495440,4495535-4495994,4496367-4496513,4496765-4496857,4496993-4497112,4497534-4497644,4497725-4497850,4497934-4498032,4498124-4498204	AT1G13180.1 CDS AT1G13180 ID=AT1G13180.1; Parent=AT1G13180; Name=AT1G13180.1; Note=Actin-like ATPase superfamily protein; curator_summary=Mutant has defect in trichome cell expansion and actin organization resulting in a distorted trichome phenotype.; conf_class=1; symbol=DIS1; Alias=ARP3, ACTIN-RELATED PROTEIN 3, ATARP3, ARABIDOPSIS THALIANA ACTIN-RELATED PROTEIN 3; full_name=DISTORTED TRICHOMES 1; computational_description=DISTORTED TRICHOMES 1 (DIS1)%3B FUNCTIONS IN: actin binding%2C structural constituent of cytoskeleton%2C ATP binding%3B INVOLVED IN: actin filament organization%2C multidimensional cell growth%2C cell morphogenesis%2C trichome morphogenesis%3B LOCATED IN: Arp2/3 protein complex%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Actin/actin-like (InterPro:IPR004000)%2C Actin-related protein 3 (InterPro:IPR015623)%3B BEST Arabidopsis thaliana protein match is: Actin-like ATPase superfamily protein (TAIR:AT2G42100.1)%3B Has 12406 Blast hits to 12242 proteins in 2483 species: Archae - 6%3B Bacteria - 5%3B Metazoa - 5339%3B Fungi - 3178%3B Plants - 1454%3B Viruses - 2%3B Other Eukaryotes - 2422 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:10572033, PMID:1843415, PMID:11891255, PMID:15012260, PMID:12690443, PMID:12837952, PMID:12913159, PMID:12906796, PMID:14757065, PMID:15653407, PMID:15063870, PMID:17267444, PMID:19626137, PMID:18613119, PMID:19801398, PMID:20404559, PMID:22891733, PMID:23874346, locus:2031815; locus_type=protein_coding
AT1G13190.1	chr1:004499633	0.0	W/4499633-4501354	AT1G13190.1 CDS AT1G13190 ID=AT1G13190.1; Parent=AT1G13190; Name=AT1G13190.1; Note=RNA-binding (RRM/RBD/RNP motifs) family protein; conf_class=2; computational_description=RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G55670.1)%3B Has 32447 Blast hits to 17825 proteins in 1064 species: Archae - 7%3B Bacteria - 12227%3B Metazoa - 10368%3B Fungi - 2543%3B Plants - 3608%3B Viruses - 174%3B Other Eukaryotes - 3520 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16258011, locus:2031830; locus_type=protein_coding
AT1G13195.1	chr1:004501778	0.0	C/4501778-4501994,4502079-4502316,4502514-4502580,4502709-4502871,4503250-4503347	AT1G13195.1 CDS AT1G13195 ID=AT1G13195.1; Parent=AT1G13195; Name=AT1G13195.1; Note=RING/U-box superfamily protein; conf_class=3; computational_description=RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type%2C conserved site (InterPro:IPR017907)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G24440.1)%3B Has 912 Blast hits to 912 proteins in 122 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 381%3B Fungi - 25%3B Plants - 358%3B Viruses - 17%3B Other Eukaryotes - 131 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17408486, PMID:18650403, PMID:18775970, locus:505006120; locus_type=protein_coding
AT1G13195.2	chr1:004501778	0.0	C/4501778-4501994,4502079-4502316,4502514-4502580,4502709-4502855	AT1G13195.2 CDS AT1G13195 ID=AT1G13195.2; Parent=AT1G13195; Name=AT1G13195.2; Note=RING/U-box superfamily protein; conf_class=2; computational_description=RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type%2C conserved site (InterPro:IPR017907)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G24440.1)%3B Has 912 Blast hits to 912 proteins in 122 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 381%3B Fungi - 25%3B Plants - 358%3B Viruses - 17%3B Other Eukaryotes - 131 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17408486, PMID:18650403, PMID:18775970, locus:505006120; locus_type=protein_coding
AT1TE14640	chr1:004506332	0.0	W/4506332-4506450	AT1TE14640 transposable_element AT1TE14640 ID=AT1TE14640; Name=AT1TE14640; Alias=ATHILA4C
AT1TE14645	chr1:004506945	0.0	C/4506945-4507041	AT1TE14645 transposable_element AT1TE14645 ID=AT1TE14645; Name=AT1TE14645; Alias=ATREP11
AT1G13200.1	chr1:004507221	0.0	C/4507221-4508528	AT1G13200.1 CDS AT1G13200 ID=AT1G13200.1; Parent=AT1G13200; Name=AT1G13200.1; Note=F-box and associated interaction domains-containing protein; conf_class=9; computational_description=F-box and associated interaction domains-containing protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: sperm cell%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%2C F-box associated domain%2C type 1 (InterPro:IPR006527)%2C F-box associated interaction domain (InterPro:IPR017451)%3B BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G12855.1)%3B Has 1698 Blast hits to 1674 proteins in 52 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1696%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=*; Dbxref=PMID:14576160, locus:2031845; locus_type=protein_coding
AT1G13210.1	chr1:004509252	0.0	C/4509252-4509902,4509995-4510186,4510280-4510504,4510610-4510825,4510920-4511028,4511126-4511214,4511299-4511575,4511675-4511785,4511871-4512769,4512847-4513296,4513382-4513774	AT1G13210.1 CDS AT1G13210 ID=AT1G13210.1; Parent=AT1G13210; Name=AT1G13210.1; Note=autoinhibited Ca2+/ATPase II; conf_class=2; symbol=ACA.l; full_name=autoinhibited Ca2+/ATPase II; computational_description=autoinhibited Ca2+/ATPase II (ACA.l)%3B FUNCTIONS IN: calmodulin binding%2C ATPase activity%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism%3B INVOLVED IN: phospholipid transport%2C ATP biosynthetic process%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: ATPase%2C P-type%2C phospholipid-translocating%2C flippase (InterPro:IPR006539)%2C ATPase%2C P-type%2C ATPase-associated domain (InterPro:IPR008250)%2C ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757)%2C ATPase%2C P-type phosphorylation site (InterPro:IPR018303)%3B BEST Arabidopsis thaliana protein match is: ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (TAIR:AT3G25610.1)%3B Has 13380 Blast hits to 11644 proteins in 1631 species: Archae - 144%3B Bacteria - 4268%3B Metazoa - 3224%3B Fungi - 2114%3B Plants - 1115%3B Viruses - 0%3B Other Eukaryotes - 2515 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11782485, PMID:11402198, PMID:15276459, PMID:15347784, PMID:15634198, PMID:16299169, PMID:18650403, PMID:23505340, locus:2031860; locus_type=protein_coding
AT1TE14655	chr1:004512584	0.0	C/4512584-4512667	AT1TE14655 transposable_element AT1TE14655 ID=AT1TE14655; Name=AT1TE14655; Alias=ATCOPIA59
AT1G13220.1	chr1:004515660	0.0	W/4515660-4515983,4516150-4516359,4516601-4516854,4516939-4517209,4517299-4517415	AT1G13220.1 CDS AT1G13220 ID=AT1G13220.1; Parent=AT1G13220; Name=AT1G13220.1; Note=nuclear matrix constituent protein-like protein; curator_summary=Encodes a nuclear coiled-coil protein related to the carrot peripheral nuclear protein NMCP1 that is involved in the determination of plant nuclear structure.; conf_class=1; symbol=LINC2; Alias=CRWN2, CROWDED NUCLEI 2; full_name=LITTLE NUCLEI2; computational_description=LITTLE NUCLEI2 (LINC2)%3B INVOLVED IN: nucleus organization%3B LOCATED IN: nucleoplasm%3B EXPRESSED IN: 15 plant structures%3B EXPRESSED DURING: 7 growth stages%3B BEST Arabidopsis thaliana protein match is: little nuclei3 (TAIR:AT1G68790.1)%3B Has 107806 Blast hits to 52972 proteins in 2654 species: Archae - 1404%3B Bacteria - 16181%3B Metazoa - 50751%3B Fungi - 7829%3B Plants - 5203%3B Viruses - 291%3B Other Eukaryotes - 26147 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12169696, PMID:15020757, PMID:17447913, PMID:17409091, PMID:17908303, PMID:17873096, PMID:18775970, PMID:23396599, locus:2031875; locus_type=protein_coding
AT1G13220.3	chr1:004515660	0.0	W/4515660-4515983,4516150-4516359,4516601-4516854,4516939-4517209,4517299-4517382,4517573-4519482,4519699-4520071	AT1G13220.3 CDS AT1G13220 ID=AT1G13220.3; Parent=AT1G13220; Name=AT1G13220.3; Note=nuclear matrix constituent protein-like protein; symbol=LINC2; Alias=CRWN2, CROWDED NUCLEI 2; full_name=LITTLE NUCLEI2; curator_summary=Encodes a nuclear coiled-coil protein related to the carrot peripheral nuclear protein NMCP1 that is involved in the determination of plant nuclear structure.; computational_description=LITTLE NUCLEI2 (LINC2)%3B INVOLVED IN: nucleus organization%3B LOCATED IN: nucleoplasm%3B EXPRESSED IN: 15 plant structures%3B EXPRESSED DURING: 7 growth stages%3B BEST Arabidopsis thaliana protein match is: little nuclei3 (TAIR:AT1G68790.1)%3B Has 107806 Blast hits to 52972 proteins in 2654 species: Archae - 1404%3B Bacteria - 16181%3B Metazoa - 50751%3B Fungi - 7829%3B Plants - 5203%3B Viruses - 291%3B Other Eukaryotes - 26147 (source: NCBI BLink).; Dbxref=PMID:12169696, PMID:15020757, PMID:17447913, PMID:17409091, PMID:17908303, PMID:17873096, PMID:18775970, PMID:23396599, locus:2031875; locus_type=protein_coding
AT1G13220.2	chr1:004515699	0.0	W/4515699-4515983,4516150-4516359,4516601-4516854,4516939-4517209,4517299-4517382,4517573-4519482,4519699-4520071	AT1G13220.2 CDS AT1G13220 ID=AT1G13220.2; Parent=AT1G13220; Name=AT1G13220.2; Note=nuclear matrix constituent protein-like protein; curator_summary=Encodes a nuclear coiled-coil protein related to the carrot peripheral nuclear protein NMCP1 that is involved in the determination of plant nuclear structure.; conf_class=2; symbol=LINC2; Alias=CRWN2, CROWDED NUCLEI 2; full_name=LITTLE NUCLEI2; computational_description=LITTLE NUCLEI2 (LINC2)%3B INVOLVED IN: nucleus organization%3B LOCATED IN: nucleoplasm%3B EXPRESSED IN: 15 plant structures%3B EXPRESSED DURING: 7 growth stages%3B BEST Arabidopsis thaliana protein match is: little nuclei3 (TAIR:AT1G68790.1)%3B Has 107806 Blast hits to 52972 proteins in 2654 species: Archae - 1404%3B Bacteria - 16181%3B Metazoa - 50751%3B Fungi - 7829%3B Plants - 5203%3B Viruses - 291%3B Other Eukaryotes - 26147 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12169696, PMID:15020757, PMID:17447913, PMID:17409091, PMID:17908303, PMID:17873096, PMID:18775970, PMID:23396599, locus:2031875; locus_type=protein_coding
AT1TE14670	chr1:004519858	0.0	W/4519858-4520031	AT1TE14670 transposable_element AT1TE14670 ID=AT1TE14670; Name=AT1TE14670; Alias=VANDAL1
AT1G13230.1	chr1:004520679	0.0	W/4520679-4520894,4521381-4522439	AT1G13230.1 CDS AT1G13230 ID=AT1G13230.1; Parent=AT1G13230; Name=AT1G13230.1; Note=Leucine-rich repeat (LRR) family protein; curator_summary=Encodes a leucine-rich repeat protein pii-2. Located in the endoplasmic reticulum/plasma membrane continuum in Arabidopsis roots. Required for growth promotion and enhanced seed production mediated by the endophytic fungus Piriformospora indica in Arabidopsis.; conf_class=1; computational_description=Leucine-rich repeat (LRR) family protein%3B INVOLVED IN: signal transduction%2C response to symbiotic fungus%2C symbiosis%2C encompassing mutualism through parasitism%3B LOCATED IN: plasma membrane%2C chloroplast%3B EXPRESSED IN: 9 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611)%3B BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT3G25670.1)%3B Has 75840 Blast hits to 27072 proteins in 996 species: Archae - 26%3B Bacteria - 3700%3B Metazoa - 16664%3B Fungi - 635%3B Plants - 50198%3B Viruses - 0%3B Other Eukaryotes - 4617 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11751054, PMID:17397506, PMID:19291320, locus:2031880; locus_type=protein_coding
AT1G13240.1	chr1:004522709	0.0	C/4522709-4522782	AT1G13240.1 tRNA AT1G13240 ID=AT1G13240.1; Parent=AT1G13240; Note=tRNA-Ile; computational_description=tRNA-Ile (anticodon: AAT); Dbxref=PMID:8980477, PMID:23066098, PMID:8980477, locus:3690477; Name=AT1G13240.1; locus_type=pre_trna
AT1G04993.1	chr1:004525271	0.0	C/4525271-4525360	AT1G04993.1 miRNA_primary_transcript AT1G04993 ID=AT1G04993.1; Parent=AT1G04993; Alias=MI0026794; Name=ath-MIR8166; symbol=ath-MIR8166; Note=microRNA ath-MIR8166 precursor; locus_type=mirna
ath-miR8166	chr1:004525316	0.0	C/4525316-4525337	ath-miR8166 miRNA ath-miR8166 ID=ath-miR8166; Alias=MIMAT0032762; Name=ath-miR8166; Derives_from=AT1G04993.1; Note=microRNA ath-miR8166; computational_description=mature miRNA accession:MIMAT0032762
AT1G13245.1	chr1:004525852	0.0	C/4525852-4525977	AT1G13245.1 CDS AT1G13245 ID=AT1G13245.1; Parent=AT1G13245; Name=AT1G13245.1; Note=ROTUNDIFOLIA like 17; conf_class=1; symbol=RTFL17; Alias=DVL4, DEVIL 4; full_name=ROTUNDIFOLIA like 17; computational_description=ROTUNDIFOLIA like 17 (RTFL17)%3B CONTAINS InterPro DOMAIN/s: DVL (InterPro:IPR012552)%3B BEST Arabidopsis thaliana protein match is: ROTUNDIFOLIA like 15 (TAIR:AT1G68825.2)%3B Has 124 Blast hits to 124 proteins in 12 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 124%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14871303, PMID:15125775, PMID:16972165, PMID:22112938, PMID:24119003, locus:504956107; locus_type=protein_coding
AT1G04997.1	chr1:004526960	0.0	C/4526960-4527364	AT1G04997.1 lnc_RNA AT1G04997 ID=AT1G04997.1; Parent=AT1G04997; Name=AT1G04997.1; locus_type=long_noncoding_rna
AT1G13250.1	chr1:004528965	0.0	C/4528965-4530002	AT1G13250.1 CDS AT1G13250 ID=AT1G13250.1; Parent=AT1G13250; Name=AT1G13250.1; Note=galacturonosyltransferase-like 3; curator_summary=Encodes a protein with putative galacturonosyltransferase activity.; conf_class=1; symbol=GATL3; full_name=galacturonosyltransferase-like 3; computational_description=galacturonosyltransferase-like 3 (GATL3)%3B FUNCTIONS IN: transferase activity%2C transferring hexosyl groups%2C polygalacturonate 4-alpha-galacturonosyltransferase activity%2C transferase activity%2C transferring glycosyl groups%3B INVOLVED IN: carbohydrate biosynthetic process%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Glycosyl transferase%2C family 8 (InterPro:IPR002495)%3B BEST Arabidopsis thaliana protein match is: galacturonosyltransferase-like 4 (TAIR:AT3G06260.1)%3B Has 2168 Blast hits to 2160 proteins in 496 species: Archae - 2%3B Bacteria - 1004%3B Metazoa - 285%3B Fungi - 17%3B Plants - 765%3B Viruses - 0%3B Other Eukaryotes - 95 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15010604, PMID:16540543, PMID:18650403, PMID:21300919, locus:2205314; locus_type=protein_coding
AT1G05003.1	chr1:004532193	0.0	C/4532193-4532450	AT1G05003.1 lnc_RNA AT1G05003 ID=AT1G05003.1; Parent=AT1G05003; Name=AT1G05003.1; locus_type=long_noncoding_rna
AT1TE14730	chr1:004538949	0.0	C/4538949-4539356	AT1TE14730 transposable_element AT1TE14730 ID=AT1TE14730; Name=AT1TE14730; Alias=BRODYAGA1A
AT1G13260.1	chr1:004542386	0.0	W/4542386-4543420	AT1G13260.1 CDS AT1G13260 ID=AT1G13260.1; Parent=AT1G13260; Name=AT1G13260.1; Note=related to ABI3/VP1 1; curator_summary=Encodes an AP2/B3 domain transcription factor which is upregulated in response to low temperature. It contains a B3 DNA binding domain. It has circadian regulation and may function as a negative growth regulator.; conf_class=1; symbol=RAV1; Alias=AtRAV1, EDF4, ETHYLENE RESPONSE DNA BINDING FACTOR 4; full_name=related to ABI3/VP1 1; computational_description=related to ABI3/VP1 1 (RAV1)%3B CONTAINS InterPro DOMAIN/s: DNA-binding%2C integrase-type (InterPro:IPR016177)%2C Transcriptional factor B3 (InterPro:IPR003340)%2C Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (InterPro:IPR001471)%3B BEST Arabidopsis thaliana protein match is: ethylene response DNA binding factor 3 (TAIR:AT3G25730.1)%3B Has 6277 Blast hits to 6015 proteins in 258 species: Archae - 0%3B Bacteria - 3%3B Metazoa - 0%3B Fungi - 0%3B Plants - 6251%3B Viruses - 0%3B Other Eukaryotes - 23 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:9862967, PMID:11118137, PMID:12167669, PMID:15040885, PMID:15610358, PMID:15728337, PMID:15548737, PMID:15980261, PMID:19324928, PMID:19420805, PMID:19802365, PMID:20100339, PMID:20333442, PMID:20826506, PMID:22229950, PMID:23792371, PMID:24483851, PMID:24812253, PMID:25231920, PMID:25226037, PMID:25189341, locus:2205319; locus_type=protein_coding
AT1G13270.1	chr1:004544999	0.0	W/4544999-4545137,4545336-4545420,4545531-4545768,4545853-4546014,4546102-4546143,4546226-4546297,4546461-4546540,4546644-4546741,4546865-4546912,4547010-4547155	AT1G13270.1 CDS AT1G13270 ID=AT1G13270.1; Parent=AT1G13270; Name=AT1G13270.1; Note=methionine aminopeptidase 1B; curator_summary=Encodes a methionine aminopeptidase formerly called MAP1B%2C renamed to MAP1C.; conf_class=2; symbol=MAP1C; Alias=MAP1B, METHIONINE AMINOPEPTIDASE 1B; full_name=methionine aminopeptidase 1B; computational_description=methionine aminopeptidase 1B (MAP1C)%3B FUNCTIONS IN: metalloexopeptidase activity%2C aminopeptidase activity%3B INVOLVED IN: proteolysis%2C N-terminal protein amino acid modification%3B LOCATED IN: mitochondrion%2C chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase M24%2C structural domain (InterPro:IPR000994)%2C Peptidase M24A%2C methionine aminopeptidase%2C subfamily 1 (InterPro:IPR002467)%2C Peptidase M24%2C methionine aminopeptidase (InterPro:IPR001714)%3B BEST Arabidopsis thaliana protein match is: methionine aminopeptidase 1C (TAIR:AT3G25740.1)%3B Has 18008 Blast hits to 17988 proteins in 2832 species: Archae - 481%3B Bacteria - 12145%3B Metazoa - 393%3B Fungi - 260%3B Plants - 253%3B Viruses - 0%3B Other Eukaryotes - 4476 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11060042, PMID:12185496, PMID:14576160, PMID:15681659, PMID:15937229, locus:2205329; locus_type=protein_coding
AT1G13270.2	chr1:004544999	0.0	W/4544999-4545137,4545336-4545420,4545531-4545768,4545853-4546014,4546102-4546143,4546226-4546297,4546461-4546574	AT1G13270.2 CDS AT1G13270 ID=AT1G13270.2; Parent=AT1G13270; Name=AT1G13270.2; Note=methionine aminopeptidase 1B; curator_summary=Encodes a methionine aminopeptidase formerly called MAP1B%2C renamed to MAP1C.; conf_class=2; symbol=MAP1C; Alias=MAP1B, METHIONINE AMINOPEPTIDASE 1B; full_name=methionine aminopeptidase 1B; computational_description=methionine aminopeptidase 1B (MAP1C)%3B FUNCTIONS IN: metalloexopeptidase activity%2C aminopeptidase activity%3B INVOLVED IN: proteolysis%2C N-terminal protein amino acid modification%3B LOCATED IN: mitochondrion%2C chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase M24%2C structural domain (InterPro:IPR000994)%2C Peptidase M24A%2C methionine aminopeptidase%2C subfamily 1 (InterPro:IPR002467)%2C Peptidase M24%2C methionine aminopeptidase (InterPro:IPR001714)%3B BEST Arabidopsis thaliana protein match is: methionine aminopeptidase 1C (TAIR:AT3G25740.1)%3B Has 18008 Blast hits to 17988 proteins in 2832 species: Archae - 481%3B Bacteria - 12145%3B Metazoa - 393%3B Fungi - 260%3B Plants - 253%3B Viruses - 0%3B Other Eukaryotes - 4476 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11060042, PMID:12185496, PMID:14576160, PMID:15681659, PMID:15937229, locus:2205329; locus_type=protein_coding
AT1TE14750	chr1:004546279	0.0	W/4546279-4546388	AT1TE14750 transposable_element AT1TE14750 ID=AT1TE14750; Name=AT1TE14750; Alias=ARNOLD2
AT1TE14755	chr1:004546389	0.0	W/4546389-4546409	AT1TE14755 transposable_element AT1TE14755 ID=AT1TE14755; Name=AT1TE14755; Alias=VANDAL8
AT1G13280.1	chr1:004547624	0.0	W/4547624-4547858,4548023-4548552	AT1G13280.1 CDS AT1G13280 ID=AT1G13280.1; Parent=AT1G13280; Name=AT1G13280.1; Note=allene oxide cyclase 4; curator_summary=Encodes allene oxide cyclase. One of four genes in Arabidopsis that encode this enzyme%2C which catalyzes an essential step in jasmonic acid biosynthesis. Gene expression is reduced during senescence%2C a process that involves jasmonic acid signalling pathway.; conf_class=2; symbol=AOC4; full_name=allene oxide cyclase 4; computational_description=allene oxide cyclase 4 (AOC4)%3B FUNCTIONS IN: allene-oxide cyclase activity%3B INVOLVED IN: jasmonic acid biosynthetic process%3B LOCATED IN: plasma membrane%2C chloroplast%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Allene oxide cyclase (InterPro:IPR009410)%3B BEST Arabidopsis thaliana protein match is: allene oxide cyclase 3 (TAIR:AT3G25780.1)%3B Has 204 Blast hits to 204 proteins in 33 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 0%3B Fungi - 0%3B Plants - 200%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11891244, PMID:12777050, PMID:14576160, PMID:15287975, PMID:16297850, PMID:16377748, PMID:16618929, PMID:16901781, PMID:17616737, PMID:18433503, PMID:18400103, PMID:23028017, PMID:23505340, locus:2205349; locus_type=protein_coding
AT1G13290.1	chr1:004550366	0.0	C/4550366-4550923,4551177-4551527	AT1G13290.1 CDS AT1G13290 ID=AT1G13290.1; Parent=AT1G13290; Name=AT1G13290.1; Note=C2H2-like zinc finger protein; curator_summary=Encodes a putative zinc finger protein (C2H2 family%2C type IIIA%2C subclass A1d) that has a WIP domain. Seedlings with mutations in DOT5 have a misaligned venation defect in their leaves and cotyledons. Additional developmental abnormalities%2C such as elongated petioles and aberrant phyllotaxy suggest that DOT5 is required for normal shoot and root development.; conf_class=1; symbol=DOT5; Alias=WIP6, WIP domain protein 6; full_name=DEFECTIVELY ORGANIZED TRIBUTARIES 5; computational_description=DEFECTIVELY ORGANIZED TRIBUTARIES 5 (DOT5)%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C C2H2-like (InterPro:IPR015880)%2C Zinc finger%2C C2H2-type (InterPro:IPR007087)%3B BEST Arabidopsis thaliana protein match is: C2H2-type zinc finger family protein (TAIR:AT3G57670.1)%3B Has 7460 Blast hits to 6100 proteins in 157 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 6553%3B Fungi - 59%3B Plants - 690%3B Viruses - 0%3B Other Eukaryotes - 158 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11118137, PMID:11782451, PMID:15236668, PMID:18643975, PMID:20541552, locus:2205334; locus_type=protein_coding
AT1G13300.1	chr1:004556977	0.0	W/4556977-4557118,4557293-4557576,4557753-4557942,4558068-4558144,4558250-4558591	AT1G13300.1 CDS AT1G13300 ID=AT1G13300.1; Parent=AT1G13300; Name=AT1G13300.1; Note=myb-like transcription factor family protein; curator_summary=Overexpression confers hypersensitivity to low phosphate-elicited inhibition of primary root growth.; conf_class=1; symbol=HRS1; Alias=AtNIGT1; full_name=HYPERSENSITIVITY TO LOW PI-ELICITED PRIMARY ROOT SHORTENING 1; computational_description=HYPERSENSITIVITY TO LOW PI-ELICITED PRIMARY ROOT SHORTENING 1 (HRS1)%3B CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%2C Myb-like DNA-binding domain%2C SHAQKYF class (InterPro:IPR006447)%2C Homeodomain-related (InterPro:IPR012287)%3B BEST Arabidopsis thaliana protein match is: myb-like transcription factor family protein (TAIR:AT3G25790.1)%3B Has 1648 Blast hits to 1627 proteins in 64 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 2%3B Fungi - 2%3B Plants - 1613%3B Viruses - 8%3B Other Eukaryotes - 21 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11118137, PMID:15078338, PMID:15375205, PMID:16212609, PMID:16297850, PMID:16776300, PMID:17061125, PMID:19341407, PMID:22545134, PMID:25723764, locus:2205339; locus_type=protein_coding
AT1G13310.1	chr1:004561217	0.0	C/4561217-4561567,4561748-4561900,4561993-4562159,4562240-4562480,4562559-4562726,4562885-4562929	AT1G13310.1 CDS AT1G13310 ID=AT1G13310.1; Parent=AT1G13310; Name=AT1G13310.1; Note=Endosomal targeting BRO1-like domain-containing protein; conf_class=3; computational_description=Endosomal targeting BRO1-like domain-containing protein%3B CONTAINS InterPro DOMAIN/s: BRO1 (InterPro:IPR004328)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16510518, locus:2205344; locus_type=protein_coding
AT1G13320.1	chr1:004563692	0.0	C/4563692-4563811,4563938-4564004,4564093-4564232,4564323-4564415,4564507-4564689,4564863-4564967,4565295-4565375,4565470-4565611,4565800-4565879,4565992-4566104,4566337-4566583,4566956-4567348	AT1G13320.1 CDS AT1G13320 ID=AT1G13320.1; Parent=AT1G13320; Name=AT1G13320.1; Note=protein phosphatase 2A subunit A3; curator_summary=one of three genes encoding the 65 kDa regulatory subunit of protein phosphatase 2A (PP2A); conf_class=3; symbol=PP2AA3; full_name=protein phosphatase 2A subunit A3; computational_description=protein phosphatase 2A subunit A3 (PP2AA3)%3B FUNCTIONS IN: binding%2C protein phosphatase type 2A regulator activity%3B INVOLVED IN: regulation of phosphorylation%3B LOCATED IN: cell wall%2C plasma membrane%2C protein phosphatase type 2A complex%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357)%2C Armadillo-like helical (InterPro:IPR011989)%2C HEAT%2C type 2 (InterPro:IPR021133)%2C Armadillo-type fold (InterPro:IPR016024)%3B BEST Arabidopsis thaliana protein match is: protein phosphatase 2A subunit A2 (TAIR:AT3G25800.1)%3B Has 2761 Blast hits to 1677 proteins in 248 species: Archae - 13%3B Bacteria - 63%3B Metazoa - 1436%3B Fungi - 398%3B Plants - 296%3B Viruses - 0%3B Other Eukaryotes - 555 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:7811971, PMID:14973165, PMID:15276459, PMID:16166256, PMID:16640601, PMID:17085508, PMID:17194763, PMID:17544464, PMID:17720869, PMID:17908303, PMID:18218967, PMID:18178770, PMID:18398052, PMID:18375597, PMID:18487351, PMID:18477400, PMID:18596930, PMID:18515502, PMID:18665917, PMID:18603615, PMID:18708476, PMID:17993623, PMID:18805991, PMID:18775970, PMID:18984675, PMID:22646759, PMID:22715043, PMID:23054470, PMID:23512856, PMID:24218491, PMID:25345678, PMID:25489022, locus:2205354; locus_type=protein_coding
AT1G13320.3	chr1:004563692	0.0	C/4563692-4563811,4563938-4564004,4564093-4564232,4564323-4564415,4564507-4564689,4564863-4564967,4565295-4565375,4565470-4565611,4565800-4565879,4565992-4566104,4566337-4566583,4566956-4567348	AT1G13320.3 CDS AT1G13320 ID=AT1G13320.3; Parent=AT1G13320; Name=AT1G13320.3; Note=protein phosphatase 2A subunit A3; curator_summary=one of three genes encoding the 65 kDa regulatory subunit of protein phosphatase 2A (PP2A); conf_class=4; symbol=PP2AA3; full_name=protein phosphatase 2A subunit A3; computational_description=protein phosphatase 2A subunit A3 (PP2AA3)%3B FUNCTIONS IN: binding%2C protein phosphatase type 2A regulator activity%3B INVOLVED IN: regulation of phosphorylation%3B LOCATED IN: cell wall%2C plasma membrane%2C protein phosphatase type 2A complex%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357)%2C Armadillo-like helical (InterPro:IPR011989)%2C HEAT%2C type 2 (InterPro:IPR021133)%2C Armadillo-type fold (InterPro:IPR016024)%3B BEST Arabidopsis thaliana protein match is: protein phosphatase 2A subunit A2 (TAIR:AT3G25800.1)%3B Has 2761 Blast hits to 1677 proteins in 248 species: Archae - 13%3B Bacteria - 63%3B Metazoa - 1436%3B Fungi - 398%3B Plants - 296%3B Viruses - 0%3B Other Eukaryotes - 555 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:7811971, PMID:14973165, PMID:15276459, PMID:16166256, PMID:16640601, PMID:17085508, PMID:17194763, PMID:17544464, PMID:17720869, PMID:17908303, PMID:18218967, PMID:18178770, PMID:18398052, PMID:18375597, PMID:18487351, PMID:18477400, PMID:18596930, PMID:18515502, PMID:18665917, PMID:18603615, PMID:18708476, PMID:17993623, PMID:18805991, PMID:18775970, PMID:18984675, PMID:22646759, PMID:22715043, PMID:23054470, PMID:23512856, PMID:24218491, PMID:25345678, PMID:25489022, locus:2205354; locus_type=protein_coding
AT1G13320.4	chr1:004563692	0.0	C/4563692-4563811,4563938-4564004,4564093-4564232,4564323-4564415,4564507-4564689,4564863-4564967,4565295-4565375,4565470-4565611,4565800-4565879,4565992-4566104,4566337-4566451	AT1G13320.4 CDS AT1G13320 ID=AT1G13320.4; Parent=AT1G13320; Name=AT1G13320.4; Note=protein phosphatase 2A subunit A3; symbol=PP2AA3; full_name=protein phosphatase 2A subunit A3; curator_summary=one of three genes encoding the 65 kDa regulatory subunit of protein phosphatase 2A (PP2A); computational_description=protein phosphatase 2A subunit A3 (PP2AA3)%3B FUNCTIONS IN: binding%2C protein phosphatase type 2A regulator activity%3B INVOLVED IN: regulation of phosphorylation%3B LOCATED IN: cell wall%2C plasma membrane%2C protein phosphatase type 2A complex%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357)%2C Armadillo-like helical (InterPro:IPR011989)%2C HEAT%2C type 2 (InterPro:IPR021133)%2C Armadillo-type fold (InterPro:IPR016024)%3B BEST Arabidopsis thaliana protein match is: protein phosphatase 2A subunit A2 (TAIR:AT3G25800.1)%3B Has 2761 Blast hits to 1677 proteins in 248 species: Archae - 13%3B Bacteria - 63%3B Metazoa - 1436%3B Fungi - 398%3B Plants - 296%3B Viruses - 0%3B Other Eukaryotes - 555 (source: NCBI BLink).; Dbxref=PMID:7811971, PMID:14973165, PMID:15276459, PMID:16166256, PMID:16640601, PMID:17085508, PMID:17194763, PMID:17544464, PMID:17720869, PMID:17908303, PMID:18218967, PMID:18178770, PMID:18398052, PMID:18375597, PMID:18487351, PMID:18477400, PMID:18596930, PMID:18515502, PMID:18665917, PMID:18603615, PMID:18708476, PMID:17993623, PMID:18805991, PMID:18775970, PMID:18984675, PMID:22646759, PMID:22715043, PMID:23054470, PMID:23512856, PMID:24218491, PMID:25345678, PMID:25489022, locus:2205354; locus_type=protein_coding
AT1G13320.2	chr1:004563970	0.0	C/4563970-4564002,4564089-4564232,4564323-4564415,4564507-4564689,4564863-4564967,4565295-4565375,4565470-4565611,4565800-4565879,4565992-4566104,4566337-4566583,4566956-4567348	AT1G13320.2 CDS AT1G13320 ID=AT1G13320.2; Parent=AT1G13320; Name=AT1G13320.2; Note=protein phosphatase 2A subunit A3; curator_summary=one of three genes encoding the 65 kDa regulatory subunit of protein phosphatase 2A (PP2A); conf_class=2; symbol=PP2AA3; full_name=protein phosphatase 2A subunit A3; computational_description=protein phosphatase 2A subunit A3 (PP2AA3)%3B FUNCTIONS IN: binding%2C protein phosphatase type 2A regulator activity%3B INVOLVED IN: regulation of phosphorylation%3B LOCATED IN: cell wall%2C plasma membrane%2C protein phosphatase type 2A complex%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357)%2C Armadillo-like helical (InterPro:IPR011989)%2C HEAT%2C type 2 (InterPro:IPR021133)%2C Armadillo-type fold (InterPro:IPR016024)%3B BEST Arabidopsis thaliana protein match is: protein phosphatase 2A subunit A2 (TAIR:AT3G25800.1)%3B Has 2761 Blast hits to 1677 proteins in 248 species: Archae - 13%3B Bacteria - 63%3B Metazoa - 1436%3B Fungi - 398%3B Plants - 296%3B Viruses - 0%3B Other Eukaryotes - 555 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:7811971, PMID:14973165, PMID:15276459, PMID:16166256, PMID:16640601, PMID:17085508, PMID:17194763, PMID:17544464, PMID:17720869, PMID:17908303, PMID:18218967, PMID:18178770, PMID:18398052, PMID:18375597, PMID:18487351, PMID:18477400, PMID:18596930, PMID:18515502, PMID:18665917, PMID:18603615, PMID:18708476, PMID:17993623, PMID:18805991, PMID:18775970, PMID:18984675, PMID:22646759, PMID:22715043, PMID:23054470, PMID:23512856, PMID:24218491, PMID:25345678, PMID:25489022, locus:2205354; locus_type=protein_coding
AT1G13330.1	chr1:004568008	0.0	W/4568008-4568035,4568143-4568168,4568529-4568796,4568883-4568953,4569040-4569228,4569312-4569410	AT1G13330.1 CDS AT1G13330 ID=AT1G13330.1; Parent=AT1G13330; Name=AT1G13330.1; Note=Tat-binding protein 1(Tbp-1)-interacting protein (TBPIP); curator_summary=Encodes the Arabidopsis Hop2 homologue. In other species%2C Hop2 is proposed to be involved in inter-homolog bias in double strand break repair.; conf_class=1; symbol=AHP2; Alias=HOP2, HOMOLOGOUS-PAIRING PROTEIN 2; full_name=Arabidopsis Hop2 homolog; computational_description=Arabidopsis Hop2 homolog (AHP2)%3B CONTAINS InterPro DOMAIN/s: Tat binding protein 1-interacting (InterPro:IPR010776)%3B Has 3022 Blast hits to 2708 proteins in 418 species: Archae - 82%3B Bacteria - 427%3B Metazoa - 1139%3B Fungi - 246%3B Plants - 98%3B Viruses - 21%3B Other Eukaryotes - 1009 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12974806, PMID:16126853, PMID:17227549, PMID:18650403, PMID:17937504, PMID:19763177, PMID:20358378, PMID:24363313, locus:2205359; locus_type=protein_coding
AT1TE14820	chr1:004568341	0.0	C/4568341-4568452	AT1TE14820 transposable_element AT1TE14820 ID=AT1TE14820; Name=AT1TE14820; Alias=ATCOPIA28
AT1G13340.1	chr1:004569622	0.0	C/4569622-4570269,4570350-4570469,4570582-4571043	AT1G13340.1 CDS AT1G13340 ID=AT1G13340.1; Parent=AT1G13340; Name=AT1G13340.1; Note=Regulator of Vps4 activity in the MVB pathway protein; conf_class=1; computational_description=Regulator of Vps4 activity in the MVB pathway protein%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292%2C eukaryotic (InterPro:IPR005061)%3B BEST Arabidopsis thaliana protein match is: Regulator of Vps4 activity in the MVB pathway protein (TAIR:AT1G34220.2)%3B Has 628 Blast hits to 628 proteins in 152 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 164%3B Fungi - 130%3B Plants - 284%3B Viruses - 0%3B Other Eukaryotes - 50 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12609040, PMID:15489280, PMID:16553893, PMID:17194769, PMID:18650403, PMID:18614705, PMID:18805951, PMID:20736450, locus:2009892; locus_type=protein_coding
AT1G13350.1	chr1:004572502	0.0	C/4572502-4572932,4573032-4573146,4573225-4573516,4573631-4573787,4573960-4574044,4574380-4574448,4574535-4574773,4575145-4575305,4575408-4575835,4576239-4576547	AT1G13350.1 CDS AT1G13350 ID=AT1G13350.1; Parent=AT1G13350; Name=AT1G13350.1; Note=Protein kinase superfamily protein; conf_class=2; computational_description=Protein kinase superfamily protein%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: nucleus%2C cytoplasm%3B EXPRESSED IN: male gametophyte%2C cultured cell%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G53640.1)%3B Has 102216 Blast hits to 93482 proteins in 2735 species: Archae - 128%3B Bacteria - 9335%3B Metazoa - 43180%3B Fungi - 13643%3B Plants - 14516%3B Viruses - 433%3B Other Eukaryotes - 20981 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15469496, PMID:15923328, PMID:18775970, PMID:21477822, locus:2009902; locus_type=protein_coding
AT1G13350.2	chr1:004572502	0.0	C/4572502-4572932,4573032-4573146,4573225-4573516,4573631-4573787,4573960-4574044,4574380-4574448,4574535-4574773,4575145-4575305,4575408-4575835,4575915-4575995,4576239-4576547	AT1G13350.2 CDS AT1G13350 ID=AT1G13350.2; Parent=AT1G13350; Name=AT1G13350.2; Note=Protein kinase superfamily protein; conf_class=6; computational_description=Protein kinase superfamily protein%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: nucleus%2C cytoplasm%3B EXPRESSED IN: male gametophyte%2C cultured cell%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G53640.1)%3B Has 102216 Blast hits to 93482 proteins in 2735 species: Archae - 128%3B Bacteria - 9335%3B Metazoa - 43180%3B Fungi - 13643%3B Plants - 14516%3B Viruses - 433%3B Other Eukaryotes - 20981 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:15469496, PMID:15923328, PMID:18775970, PMID:21477822, locus:2009902; locus_type=protein_coding
AT1G13350.3	chr1:004572502	0.0	C/4572502-4572932,4573032-4573146,4573225-4573516,4573631-4573787,4573960-4574044,4574242-4574448,4574535-4574773,4575145-4575305,4575408-4575835,4575915-4575995,4576239-4576547	AT1G13350.3 CDS AT1G13350 ID=AT1G13350.3; Parent=AT1G13350; Name=AT1G13350.3; Note=Protein kinase superfamily protein; computational_description=Protein kinase superfamily protein%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: nucleus%2C cytoplasm%3B EXPRESSED IN: male gametophyte%2C cultured cell%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G53640.1)%3B Has 102216 Blast hits to 93482 proteins in 2735 species: Archae - 128%3B Bacteria - 9335%3B Metazoa - 43180%3B Fungi - 13643%3B Plants - 14516%3B Viruses - 433%3B Other Eukaryotes - 20981 (source: NCBI BLink).; Dbxref=PMID:15469496, PMID:15923328, PMID:18775970, PMID:21477822, locus:2009902; locus_type=protein_coding
AT1G13360.2	chr1:004576895	0.0	C/4576895-4576964,4577305-4577813	AT1G13360.2 CDS AT1G13360 ID=AT1G13360.2; Parent=AT1G13360; Name=AT1G13360.2; Note=hypothetical protein; conf_class=4; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G25870.1)%3B Has 69 Blast hits to 69 proteins in 16 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 6%3B Fungi - 0%3B Plants - 63%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=***; Dbxref=locus:2205324; locus_type=protein_coding
AT1G13360.3	chr1:004577000	0.0	C/4577000-4577024,4577305-4577813	AT1G13360.3 CDS AT1G13360 ID=AT1G13360.3; Parent=AT1G13360; Name=AT1G13360.3; Note=hypothetical protein; conf_class=2; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G25870.1)%3B Has 69 Blast hits to 69 proteins in 16 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 6%3B Fungi - 0%3B Plants - 63%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2205324; locus_type=protein_coding
AT1G13360.1	chr1:004577229	0.0	C/4577229-4577813	AT1G13360.1 CDS AT1G13360 ID=AT1G13360.1; Parent=AT1G13360; Name=AT1G13360.1; Note=hypothetical protein; conf_class=1; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G25870.1)%3B Has 69 Blast hits to 69 proteins in 16 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 6%3B Fungi - 0%3B Plants - 63%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:2205324; locus_type=protein_coding
AT1G05007.1	chr1:004580080	0.0	C/4580080-4580364	AT1G05007.1 lnc_RNA AT1G05007 ID=AT1G05007.1; Parent=AT1G05007; Name=AT1G05007.1; locus_type=long_noncoding_rna
AT1TE14860	chr1:004580427	0.0	C/4580427-4580846	AT1TE14860 transposable_element AT1TE14860 ID=AT1TE14860; Name=AT1TE14860; Alias=HELITRONY3
AT1TE14865	chr1:004582383	0.0	W/4582383-4583615	AT1TE14865 transposable_element AT1TE14865 ID=AT1TE14865; Name=AT1TE14865; Alias=ATREP2
AT1TE14870	chr1:004583616	0.0	W/4583616-4584299	AT1TE14870 transposable_element AT1TE14870 ID=AT1TE14870; Name=AT1TE14870; Alias=HELITRONY1D
AT1G08895.1	chr1:004583699	0.0	W/4583699-4585625	AT1G08895.1 transcript_region AT1G08895 ID=AT1G08895.1; Parent=AT1G08895; computational_description=novel transcribed region; Name=AT1G08895.1; locus_type=novel_transcribed_region
AT1G08895.2	chr1:004583699	0.0	W/4583699-4584348	AT1G08895.2 transcript_region AT1G08895 ID=AT1G08895.2; Parent=AT1G08895; computational_description=novel transcribed region; Name=AT1G08895.2; locus_type=novel_transcribed_region
AT1G13370.1	chr1:004587926	0.0	C/4587926-4588096,4588202-4588292,4588374-4588522	AT1G13370.1 CDS AT1G13370 ID=AT1G13370.1; Parent=AT1G13370; Name=AT1G13370.1; Note=Histone superfamily protein; conf_class=2; computational_description=Histone superfamily protein%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: nucleosome assembly%3B LOCATED IN: chloroplast%2C nucleosome%3B EXPRESSED IN: root%2C inflorescence%2C flower%2C leaf%3B EXPRESSED DURING: seedling growth%3B CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164)%2C Histone-fold (InterPro:IPR009072)%2C Histone core (InterPro:IPR007125)%3B BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT4G40030.2)%3B Has 14571 Blast hits to 14563 proteins in 7243 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 10588%3B Fungi - 2030%3B Plants - 1255%3B Viruses - 0%3B Other Eukaryotes - 698 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:16262706, PMID:16489130, PMID:16452472, PMID:18477400, locus:2009907; locus_type=protein_coding
AT1G13380.1	chr1:004589218	0.0	C/4589218-4589476,4589663-4589868,4590261-4590362	AT1G13380.1 CDS AT1G13380 ID=AT1G13380.1; Parent=AT1G13380; Name=AT1G13380.1; Note=sodium/hydrogen exchanger (DUF1218); conf_class=2; computational_description=Protein of unknown function (DUF1218)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1218) (TAIR:AT4G27435.1)%3B Has 523 Blast hits to 523 proteins in 97 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 523%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16776300, PMID:16951058, locus:2009922; locus_type=protein_coding
AT1G13390.1	chr1:004592829	0.0	C/4592829-4593140,4593245-4593308,4593395-4593549	AT1G13390.1 CDS AT1G13390 ID=AT1G13390.1; Parent=AT1G13390; Name=AT1G13390.1; Note=translocase subunit seca; conf_class=2; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G68490.1)%3B Has 114 Blast hits to 114 proteins in 18 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 114%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2009937; locus_type=protein_coding
AT1G13390.2	chr1:004592829	0.0	C/4592829-4593140,4593245-4593308,4593395-4593549	AT1G13390.2 CDS AT1G13390 ID=AT1G13390.2; Parent=AT1G13390; Name=AT1G13390.2; Note=translocase subunit seca; conf_class=3; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G68490.1)%3B Has 114 Blast hits to 114 proteins in 18 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 114%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2009937; locus_type=protein_coding
AT1TE14900	chr1:004594517	0.0	C/4594517-4594550	AT1TE14900 transposable_element AT1TE14900 ID=AT1TE14900; Name=AT1TE14900; Alias=ATREP4
AT1TE14905	chr1:004594612	0.0	W/4594612-4595537	AT1TE14905 transposable_element AT1TE14905 ID=AT1TE14905; Name=AT1TE14905; Alias=ATREP11
AT1TE14910	chr1:004595538	0.0	W/4595538-4595817	AT1TE14910 transposable_element AT1TE14910 ID=AT1TE14910; Name=AT1TE14910; Alias=ATREP10D
AT1G13400.1	chr1:004597784	0.0	W/4597784-4597785,4597890-4597996,4598235-4598348,4598426-4598513,4598599-4598911	AT1G13400.1 CDS AT1G13400 ID=AT1G13400.1; Parent=AT1G13400; Name=AT1G13400.1; Note=C2H2 and C2HC zinc fingers superfamily protein; curator_summary=Along with JAG%2C it is involved in stamen and carpel development. Expression is limited to the adaxial side of lateral organs. Activated by AGAMOUS in a cal-1%2C ap1-1 background.; conf_class=1; symbol=NUB; Alias=JGL, JAGGED-LIKE; full_name=NUBBIN; computational_description=NUBBIN (NUB)%3B FUNCTIONS IN: zinc ion binding%2C nucleic acid binding%3B INVOLVED IN: stamen development%2C anther development%2C carpel development%3B LOCATED IN: intracellular%3B EXPRESSED IN: 10 plant structures%3B EXPRESSED DURING: petal differentiation and expansion stage%2C E expanded cotyledon stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C C2H2-like (InterPro:IPR015880)%2C Zinc finger%2C C2H2-type (InterPro:IPR007087)%3B BEST Arabidopsis thaliana protein match is: C2H2 and C2HC zinc fingers superfamily protein (TAIR:AT1G68480.1)%3B Has 743 Blast hits to 743 proteins in 27 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 739%3B Viruses - 0%3B Other Eukaryotes - 4 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14973282, PMID:14973281, PMID:15236668, PMID:15634696, PMID:15800002, PMID:16554365, PMID:16920880, PMID:18193167, locus:2009952; locus_type=protein_coding
AT1G13410.1	chr1:004601526	0.0	W/4601526-4601649,4601874-4603174	AT1G13410.1 CDS AT1G13410 ID=AT1G13410.1; Parent=AT1G13410; Name=AT1G13410.1; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; conf_class=4; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G02750.1)%3B Has 37390 Blast hits to 13439 proteins in 200 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 27%3B Fungi - 54%3B Plants - 36888%3B Viruses - 0%3B Other Eukaryotes - 417 (source: NCBI BLink).; conf_rating=***; Dbxref=locus:2010012; locus_type=protein_coding
AT1G13420.1	chr1:004604871	0.0	W/4604871-4605866	AT1G13420.1 CDS AT1G13420 ID=AT1G13420.1; Parent=AT1G13420; Name=AT1G13420.1; Note=sulfotransferase 4B; curator_summary=Encodes a sulfotransferase. Unlike the related ST4A protein (At2g14920)%2C in vitro experiements show that this enzyme does not act brassinosteroids. ST4B is expressed in the roots and transcript levels rise in response to cytokinin treatment.; conf_class=1; symbol=ST4B; Alias=ATST4B, ARABIDOPSIS THALIANA SULFOTRANSFERASE 4B; full_name=sulfotransferase 4B; computational_description=sulfotransferase 4B (ST4B)%3B CONTAINS InterPro DOMAIN/s: Sulfotransferase domain (InterPro:IPR000863)%3B BEST Arabidopsis thaliana protein match is: sulfotransferase 4A (TAIR:AT2G14920.1)%3B Has 2771 Blast hits to 2728 proteins in 191 species: Archae - 0%3B Bacteria - 215%3B Metazoa - 1679%3B Fungi - 1%3B Plants - 543%3B Viruses - 0%3B Other Eukaryotes - 333 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12777052, PMID:14973166, PMID:15234990, PMID:15356332, PMID:15695462, PMID:15824099, PMID:16673935, PMID:17061125, PMID:17039368, PMID:17189325, PMID:18162594, PMID:24202284, locus:2009992; locus_type=protein_coding
AT1G13430.1	chr1:004606530	0.0	W/4606530-4607585	AT1G13430.1 CDS AT1G13430 ID=AT1G13430.1; Parent=AT1G13430; Name=AT1G13430.1; Note=sulfotransferase 4C; curator_summary=Encodes a sulfotransferase. Unlike the related ST4A protein (At2g14920)%2C in vitro experiements show that this enzyme does not act brassinosteroids. ST4C is expressed in the roots and transcript levels rise in response to cytokinin treatment.; conf_class=1; symbol=ST4C; Alias=ATST4C, ARABIDOPSIS THALIANA SULFOTRANSFERASE 4C; full_name=sulfotransferase 4C; computational_description=sulfotransferase 4C (ST4C)%3B CONTAINS InterPro DOMAIN/s: Sulfotransferase domain (InterPro:IPR000863)%3B BEST Arabidopsis thaliana protein match is: sulfotransferase 4A (TAIR:AT2G14920.1)%3B Has 2670 Blast hits to 2627 proteins in 170 species: Archae - 0%3B Bacteria - 153%3B Metazoa - 1667%3B Fungi - 1%3B Plants - 539%3B Viruses - 0%3B Other Eukaryotes - 310 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12777052, PMID:15234990, PMID:17061125, PMID:17039368, locus:2010027; locus_type=protein_coding
AT1G13440.1	chr1:004608465	0.0	C/4608465-4608597,4608691-4608774,4608863-4609005,4609092-4609189,4609275-4609335,4609436-4609582,4609669-4609768,4609860-4609975,4610176-4610276,4610368-4610397,4610491-4610494	AT1G13440.1 CDS AT1G13440 ID=AT1G13440.1; Parent=AT1G13440; Name=AT1G13440.1; Note=glyceraldehyde-3-phosphate dehydrogenase C2; conf_class=2; symbol=GAPC2; Alias=GAPC-2, GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C-2; full_name=glyceraldehyde-3-phosphate dehydrogenase C2; computational_description=glyceraldehyde-3-phosphate dehydrogenase C2 (GAPC2)%3B FUNCTIONS IN: copper ion binding%2C glyceraldehyde-3-phosphate dehydrogenase activity%2C zinc ion binding%3B INVOLVED IN: response to oxidative stress%2C response to cadmium ion%2C gluconeogenesis%2C defense response to bacterium%2C glycolysis%3B LOCATED IN: in 8 components%3B EXPRESSED IN: 27 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase subfamily (InterPro:IPR000173)%2C Glyceraldehyde 3-phosphate dehydrogenase family (InterPro:IPR020831)%2C Glyceraldehyde-3-phosphate dehydrogenase%2C type I (InterPro:IPR006424)%2C Glyceraldehyde 3-phosphate dehydrogenase%2C active site (InterPro:IPR020830)%2C Glyceraldehyde 3-phosphate dehydrogenase%2C catalytic domain (InterPro:IPR020829)%2C Glyceraldehyde 3-phosphate dehydrogenase%2C catalytic domain%2C subgroup (InterPro:IPR020832)%2C Glyceraldehyde 3-phosphate dehydrogenase%2C NAD(P) binding domain (InterPro:IPR020828)%3B BEST Arabidopsis thaliana protein match is: glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (TAIR:AT3G04120.1)%3B Has 25382 Blast hits to 25370 proteins in 6374 species: Archae - 87%3B Bacteria - 10988%3B Metazoa - 2357%3B Fungi - 2864%3B Plants - 3864%3B Viruses - 0%3B Other Eukaryotes - 5222 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12383089, PMID:12492832, PMID:12953116, PMID:14604444, PMID:14671022, PMID:15060130, PMID:15052571, PMID:15533878, PMID:15769804, PMID:15971193, PMID:15908592, PMID:16055689, PMID:16125897, PMID:16166256, PMID:16247729, PMID:16358359, PMID:16502469, PMID:16500996, PMID:16679420, PMID:16916443, PMID:17028151, PMID:17587460, PMID:17672910, PMID:17828791, PMID:18298409, PMID:18441225, PMID:18375597, PMID:18596930, PMID:18665917, PMID:17993623, PMID:18820081, PMID:20018591, PMID:20118269, PMID:21852359, PMID:22347455, PMID:22576848, PMID:22607208, PMID:22589465, PMID:22995300, PMID:23323832, PMID:23316205, PMID:23289948, PMID:23504314, PMID:23569110, PMID:24130194, PMID:25345678, locus:2010007; locus_type=protein_coding
AT1G13440.2	chr1:004608465	0.0	C/4608465-4608597,4608691-4608774,4608863-4609005,4609092-4609189,4609275-4609321,4609506-4609582,4609669-4609768,4609860-4609975,4610176-4610276,4610368-4610397,4610491-4610494	AT1G13440.2 CDS AT1G13440 ID=AT1G13440.2; Parent=AT1G13440; Name=AT1G13440.2; Note=glyceraldehyde-3-phosphate dehydrogenase C2; conf_class=3; symbol=GAPC2; Alias=GAPC-2, GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C-2; full_name=glyceraldehyde-3-phosphate dehydrogenase C2; computational_description=glyceraldehyde-3-phosphate dehydrogenase C2 (GAPC2)%3B FUNCTIONS IN: copper ion binding%2C glyceraldehyde-3-phosphate dehydrogenase activity%2C zinc ion binding%3B INVOLVED IN: response to oxidative stress%2C response to cadmium ion%2C gluconeogenesis%2C defense response to bacterium%2C glycolysis%3B LOCATED IN: in 8 components%3B EXPRESSED IN: 27 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase subfamily (InterPro:IPR000173)%2C Glyceraldehyde 3-phosphate dehydrogenase family (InterPro:IPR020831)%2C Glyceraldehyde-3-phosphate dehydrogenase%2C type I (InterPro:IPR006424)%2C Glyceraldehyde 3-phosphate dehydrogenase%2C active site (InterPro:IPR020830)%2C Glyceraldehyde 3-phosphate dehydrogenase%2C catalytic domain (InterPro:IPR020829)%2C Glyceraldehyde 3-phosphate dehydrogenase%2C catalytic domain%2C subgroup (InterPro:IPR020832)%2C Glyceraldehyde 3-phosphate dehydrogenase%2C NAD(P) binding domain (InterPro:IPR020828)%3B BEST Arabidopsis thaliana protein match is: glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (TAIR:AT3G04120.1)%3B Has 25382 Blast hits to 25370 proteins in 6374 species: Archae - 87%3B Bacteria - 10988%3B Metazoa - 2357%3B Fungi - 2864%3B Plants - 3864%3B Viruses - 0%3B Other Eukaryotes - 5222 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12383089, PMID:12492832, PMID:12953116, PMID:14604444, PMID:14671022, PMID:15060130, PMID:15052571, PMID:15533878, PMID:15769804, PMID:15971193, PMID:15908592, PMID:16055689, PMID:16125897, PMID:16166256, PMID:16247729, PMID:16358359, PMID:16502469, PMID:16500996, PMID:16679420, PMID:16916443, PMID:17028151, PMID:17587460, PMID:17672910, PMID:17828791, PMID:18298409, PMID:18441225, PMID:18375597, PMID:18596930, PMID:18665917, PMID:17993623, PMID:18820081, PMID:20018591, PMID:20118269, PMID:21852359, PMID:22347455, PMID:22576848, PMID:22607208, PMID:22589465, PMID:22995300, PMID:23323832, PMID:23316205, PMID:23289948, PMID:23504314, PMID:23569110, PMID:24130194, PMID:25345678, locus:2010007; locus_type=protein_coding
AT1G05013.1	chr1:004611526	0.0	W/4611526-4611773	AT1G05013.1 lnc_RNA AT1G05013 ID=AT1G05013.1; Parent=AT1G05013; Name=AT1G05013.1; locus_type=long_noncoding_rna
AT1G13448.1	chr1:004612243	0.0	W/4612243-4612929	AT1G13448.1 antisense_lncRNA AT1G13448 ID=AT1G13448.1; Parent=AT1G13448; index=1; curator_summary=Potential natural antisense gene%2C locus overlaps with AT1G13450; Dbxref=locus:4010713442; Name=AT1G13448.1; nochangenat-description=Natural antisense transcript overlaps with AT1G13450; Note=Natural antisense transcript overlaps with AT1G13450; locus_type=antisense_long_noncoding_rna
AT1G13450.1	chr1:004612999	0.0	C/4612999-4613198,4613286-4613516,4613755-4613889,4614198-4614236,4614500-4615115	AT1G13450.1 CDS AT1G13450 ID=AT1G13450.1; Parent=AT1G13450; Name=AT1G13450.1; Note=Homeodomain-like superfamily protein; curator_summary=Encodes GT-1%2C a plant transcription factor that binds to one of the cis-acting elements%2C BoxII%2C which resides within the upstream promoter region of light-responsive genes. GT-1 was assumed to act as a molecular switch modulated through Ca(2+)-dependent phosphorylation/dephosphorylation in response to light signals.; conf_class=2; symbol=GT-1; full_name=GT-1; computational_description=Homeodomain-like superfamily protein%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C MYB-like (InterPro:IPR017877)%3B BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G25990.1)%3B Has 629 Blast hits to 540 proteins in 66 species: Archae - 0%3B Bacteria - 1%3B Metazoa - 110%3B Fungi - 7%3B Plants - 508%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:15044016, PMID:15310827, PMID:16626458, PMID:18230142, PMID:18775970, PMID:20717979, locus:2009897; locus_type=protein_coding
AT1G13450.2	chr1:004613708	0.0	C/4613708-4613889,4614198-4614236,4614500-4615115	AT1G13450.2 CDS AT1G13450 ID=AT1G13450.2; Parent=AT1G13450; Name=AT1G13450.2; Note=Homeodomain-like superfamily protein; curator_summary=Encodes GT-1%2C a plant transcription factor that binds to one of the cis-acting elements%2C BoxII%2C which resides within the upstream promoter region of light-responsive genes. GT-1 was assumed to act as a molecular switch modulated through Ca(2+)-dependent phosphorylation/dephosphorylation in response to light signals.; conf_class=2; symbol=GT-1; full_name=GT-1; computational_description=Homeodomain-like superfamily protein%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C MYB-like (InterPro:IPR017877)%3B BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G25990.1)%3B Has 629 Blast hits to 540 proteins in 66 species: Archae - 0%3B Bacteria - 1%3B Metazoa - 110%3B Fungi - 7%3B Plants - 508%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:15044016, PMID:15310827, PMID:16626458, PMID:18230142, PMID:18775970, PMID:20717979, locus:2009897; locus_type=protein_coding
AT1G13450.3	chr1:004613708	0.0	C/4613708-4613889,4614198-4614236,4614500-4615115	AT1G13450.3 CDS AT1G13450 ID=AT1G13450.3; Parent=AT1G13450; Name=AT1G13450.3; Note=Homeodomain-like superfamily protein; curator_summary=Encodes GT-1%2C a plant transcription factor that binds to one of the cis-acting elements%2C BoxII%2C which resides within the upstream promoter region of light-responsive genes. GT-1 was assumed to act as a molecular switch modulated through Ca(2+)-dependent phosphorylation/dephosphorylation in response to light signals.; conf_class=2; symbol=GT-1; full_name=GT-1; computational_description=Homeodomain-like superfamily protein%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C MYB-like (InterPro:IPR017877)%3B BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G25990.1)%3B Has 629 Blast hits to 540 proteins in 66 species: Archae - 0%3B Bacteria - 1%3B Metazoa - 110%3B Fungi - 7%3B Plants - 508%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:15044016, PMID:15310827, PMID:16626458, PMID:18230142, PMID:18775970, PMID:20717979, locus:2009897; locus_type=protein_coding
AT1G13450.4	chr1:004614163	0.0	C/4614163-4614236,4614500-4615115	AT1G13450.4 CDS AT1G13450 ID=AT1G13450.4; Parent=AT1G13450; Name=AT1G13450.4; Note=Homeodomain-like superfamily protein; symbol=GT-1; full_name=GT-1; curator_summary=Encodes GT-1%2C a plant transcription factor that binds to one of the cis-acting elements%2C BoxII%2C which resides within the upstream promoter region of light-responsive genes. GT-1 was assumed to act as a molecular switch modulated through Ca(2+)-dependent phosphorylation/dephosphorylation in response to light signals.; computational_description=Homeodomain-like superfamily protein%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C MYB-like (InterPro:IPR017877)%3B BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G25990.1)%3B Has 629 Blast hits to 540 proteins in 66 species: Archae - 0%3B Bacteria - 1%3B Metazoa - 110%3B Fungi - 7%3B Plants - 508%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).; Dbxref=PMID:11118137, PMID:15044016, PMID:15310827, PMID:16626458, PMID:18230142, PMID:18775970, PMID:20717979, locus:2009897; locus_type=protein_coding
AT1G13460.1	chr1:004616504	0.0	W/4616504-4617667,4617866-4618180	AT1G13460.1 CDS AT1G13460 ID=AT1G13460.1; Parent=AT1G13460; Name=AT1G13460.1; Note=Protein phosphatase 2A regulatory B subunit family protein; curator_summary=Encodes protein phosphatase 2A (PP2A) B'theta subunit. Targeted to peroxisomes.; conf_class=1; computational_description=Protein phosphatase 2A regulatory B subunit family protein%3B FUNCTIONS IN: protein phosphatase type 2A regulator activity%3B INVOLVED IN: signal transduction%3B LOCATED IN: peroxisome%2C protein phosphatase type 2A complex%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein phosphatase 2A%2C regulatory B subunit%2C B56 (InterPro:IPR002554)%3B BEST Arabidopsis thaliana protein match is: Protein phosphatase 2A regulatory B subunit family protein (TAIR:AT3G26020.2)%3B Has 1181 Blast hits to 1162 proteins in 197 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 570%3B Fungi - 160%3B Plants - 300%3B Viruses - 0%3B Other Eukaryotes - 151 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14576160, PMID:18359847, PMID:19672620, PMID:25489022, locus:2009912; locus_type=protein_coding
AT1G13460.2	chr1:004616504	0.0	W/4616504-4617667,4617866-4618180	AT1G13460.2 CDS AT1G13460 ID=AT1G13460.2; Parent=AT1G13460; Name=AT1G13460.2; Note=Protein phosphatase 2A regulatory B subunit family protein; curator_summary=Encodes protein phosphatase 2A (PP2A) B'theta subunit. Targeted to peroxisomes.; conf_class=2; computational_description=Protein phosphatase 2A regulatory B subunit family protein%3B FUNCTIONS IN: protein phosphatase type 2A regulator activity%3B INVOLVED IN: signal transduction%3B LOCATED IN: peroxisome%2C protein phosphatase type 2A complex%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein phosphatase 2A%2C regulatory B subunit%2C B56 (InterPro:IPR002554)%3B BEST Arabidopsis thaliana protein match is: Protein phosphatase 2A regulatory B subunit family protein (TAIR:AT3G26020.2)%3B Has 1181 Blast hits to 1162 proteins in 197 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 570%3B Fungi - 160%3B Plants - 300%3B Viruses - 0%3B Other Eukaryotes - 151 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:18359847, PMID:19672620, PMID:25489022, locus:2009912; locus_type=protein_coding
AT1TE14990	chr1:004619725	0.0	C/4619725-4620115	AT1TE14990 transposable_element AT1TE14990 ID=AT1TE14990; Name=AT1TE14990; Alias=HELITRON4
AT1G13470.1	chr1:004620322	0.0	C/4620322-4621153,4621235-4621542	AT1G13470.1 CDS AT1G13470 ID=AT1G13470.1; Parent=AT1G13470; Name=AT1G13470.1; Note=hypothetical protein (DUF1262); conf_class=1; computational_description=Protein of unknown function (DUF1262)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1262 (InterPro:IPR010683)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1262) (TAIR:AT1G13520.1)%3B Has 101 Blast hits to 94 proteins in 9 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 101%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:18307823, PMID:18298954, PMID:18650403, locus:2009927; locus_type=protein_coding
AT1G13480.1	chr1:004622783	0.0	C/4622783-4623626,4623724-4624043	AT1G13480.1 CDS AT1G13480 ID=AT1G13480.1; Parent=AT1G13480; Name=AT1G13480.1; Note=hypothetical protein (DUF1262); conf_class=1; computational_description=Protein of unknown function (DUF1262)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1262 (InterPro:IPR010683)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1262) (TAIR:AT1G13520.1)%3B Has 111 Blast hits to 104 proteins in 9 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 111%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:20736450, locus:2009942; locus_type=protein_coding
AT1G13485.1	chr1:004624171	0.0	C/4624171-4624344	AT1G13485.1 CDS AT1G13485 ID=AT1G13485.1; Parent=AT1G13485; Name=AT1G13485.1; Note=hypothetical protein; conf_class=9; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).; conf_rating=*; Dbxref=locus:5019474610; locus_type=protein_coding
AT1G13490.1	chr1:004624715	0.0	C/4624715-4625498,4625664-4625763,4625857-4626064	AT1G13490.1 CDS AT1G13490 ID=AT1G13490.1; Parent=AT1G13490; Name=AT1G13490.1; Note=hypothetical protein (DUF1262); conf_class=9; computational_description=Protein of unknown function (DUF1262)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1262 (InterPro:IPR010683)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1262) (TAIR:AT1G13500.1)%3B Has 101 Blast hits to 94 proteins in 9 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 101%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*; Dbxref=locus:2009957; locus_type=protein_coding
AT1G13490.2	chr1:004624715	0.0	C/4624715-4625555,4625664-4625763,4625857-4626064	AT1G13490.2 CDS AT1G13490 ID=AT1G13490.2; Parent=AT1G13490; Name=AT1G13490.2; Note=hypothetical protein (DUF1262); computational_description=Protein of unknown function (DUF1262)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1262 (InterPro:IPR010683)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1262) (TAIR:AT1G13500.1)%3B Has 101 Blast hits to 94 proteins in 9 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 101%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=locus:2009957; locus_type=protein_coding
AT1G13500.1	chr1:004627789	0.0	C/4627789-4628635,4628763-4628862,4628956-4629169	AT1G13500.1 CDS AT1G13500 ID=AT1G13500.1; Parent=AT1G13500; Name=AT1G13500.1; Note=hypothetical protein (DUF1262); conf_class=9; computational_description=Protein of unknown function (DUF1262)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1262 (InterPro:IPR010683)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1262) (TAIR:AT1G13530.1)%3B Has 101 Blast hits to 94 proteins in 9 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 101%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*; Dbxref=locus:2009972; locus_type=protein_coding
AT1G13510.1	chr1:004629459	0.0	C/4629459-4630281,4630368-4630687	AT1G13510.1 CDS AT1G13510 ID=AT1G13510.1; Parent=AT1G13510; Name=AT1G13510.1; Note=hypothetical protein (DUF1262); conf_class=1; computational_description=Protein of unknown function (DUF1262)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1262 (InterPro:IPR010683)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1262) (TAIR:AT1G13540.1)%3B Has 101 Blast hits to 94 proteins in 9 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 101%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:2009987; locus_type=protein_coding
AT1G13520.1	chr1:004631857	0.0	C/4631857-4632700,4632904-4633223	AT1G13520.1 CDS AT1G13520 ID=AT1G13520.1; Parent=AT1G13520; Name=AT1G13520.1; Note=hypothetical protein (DUF1262); conf_class=2; computational_description=Protein of unknown function (DUF1262)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1262 (InterPro:IPR010683)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1262) (TAIR:AT1G13480.1)%3B Has 107 Blast hits to 100 proteins in 12 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 0%3B Fungi - 0%3B Plants - 101%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18441225, PMID:20032078, PMID:20736450, PMID:23517122, locus:2010002; locus_type=protein_coding
AT1G13530.1	chr1:004633740	0.0	C/4633740-4634577,4634707-4634818,4634922-4635129	AT1G13530.1 CDS AT1G13530 ID=AT1G13530.1; Parent=AT1G13530; Name=AT1G13530.1; Note=hypothetical protein (DUF1262); conf_class=6; computational_description=Protein of unknown function (DUF1262)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1262 (InterPro:IPR010683)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1262) (TAIR:AT1G13500.1)%3B Has 101 Blast hits to 94 proteins in 9 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 101%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:11115874, PMID:20736450, locus:2010017; locus_type=protein_coding
AT1G13540.1	chr1:004635474	0.0	C/4635474-4636296,4636386-4636708	AT1G13540.1 CDS AT1G13540 ID=AT1G13540.1; Parent=AT1G13540; Name=AT1G13540.1; Note=hypothetical protein (DUF1262); conf_class=1; computational_description=Protein of unknown function (DUF1262)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1262 (InterPro:IPR010683)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1262) (TAIR:AT1G13510.1)%3B Has 101 Blast hits to 94 proteins in 9 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 101%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:20736450, locus:2009977; locus_type=protein_coding
AT1G13550.1	chr1:004637072	0.0	C/4637072-4637921,4637999-4638315	AT1G13550.1 CDS AT1G13550 ID=AT1G13550.1; Parent=AT1G13550; Name=AT1G13550.1; Note=hypothetical protein (DUF1262); conf_class=1; computational_description=Protein of unknown function (DUF1262)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1262 (InterPro:IPR010683)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1262) (TAIR:AT1G13480.1)%3B Has 101 Blast hits to 94 proteins in 9 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 101%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:20736450, locus:2009962; locus_type=protein_coding
AT1G13560.1	chr1:004638834	0.0	C/4638834-4638855,4638941-4639013,4639120-4639172,4639257-4639315,4639411-4639473,4639570-4639654,4639746-4639786,4639867-4639930,4640046-4640115,4640223-4640291,4640421-4640515,4640594-4640694,4640781-4640803,4640890-4640965,4641069-4641146,4641276-4641326,4641419-4641428,4641555-4641691	AT1G13560.1 CDS AT1G13560 ID=AT1G13560.1; Parent=AT1G13560; Name=AT1G13560.1; Note=aminoalcoholphosphotransferase 1; curator_summary=Encodes aminoalcoholphosphotransferase AAPT1.; conf_class=3; symbol=AAPT1; Alias=ATAAPT1; full_name=aminoalcoholphosphotransferase 1; computational_description=aminoalcoholphosphotransferase 1 (AAPT1)%3B FUNCTIONS IN: phosphatidyltransferase activity%2C phosphotransferase activity%2C for other substituted phosphate groups%3B INVOLVED IN: phospholipid biosynthetic process%3B LOCATED IN: membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Choline/ethanolaminephosphotransferase (InterPro:IPR014472)%2C CDP-alcohol phosphatidyltransferase (InterPro:IPR000462)%3B BEST Arabidopsis thaliana protein match is: aminoalcoholphosphotransferase (TAIR:AT3G25585.4)%3B Has 927 Blast hits to 921 proteins in 239 species: Archae - 6%3B Bacteria - 34%3B Metazoa - 364%3B Fungi - 227%3B Plants - 82%3B Viruses - 0%3B Other Eukaryotes - 214 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12739150, PMID:15596101, PMID:15527784, PMID:18650403, PMID:18775970, PMID:23505340, locus:2009947; locus_type=protein_coding
AT1G13560.2	chr1:004638834	0.0	C/4638834-4638855,4638941-4639013,4639120-4639172,4639257-4639315,4639411-4639473,4639570-4639654,4639746-4639786,4639867-4639930,4640046-4640115,4640223-4640291,4640421-4640515,4640594-4640694,4640781-4640803,4640890-4640965,4641069-4641146,4641276-4641326,4641546-4641563	AT1G13560.2 CDS AT1G13560 ID=AT1G13560.2; Parent=AT1G13560; Name=AT1G13560.2; Note=aminoalcoholphosphotransferase 1; curator_summary=Encodes aminoalcoholphosphotransferase AAPT1.; conf_class=3; symbol=AAPT1; Alias=ATAAPT1; full_name=aminoalcoholphosphotransferase 1; computational_description=aminoalcoholphosphotransferase 1 (AAPT1)%3B FUNCTIONS IN: phosphatidyltransferase activity%2C phosphotransferase activity%2C for other substituted phosphate groups%3B INVOLVED IN: phospholipid biosynthetic process%3B LOCATED IN: membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Choline/ethanolaminephosphotransferase (InterPro:IPR014472)%2C CDP-alcohol phosphatidyltransferase (InterPro:IPR000462)%3B BEST Arabidopsis thaliana protein match is: aminoalcoholphosphotransferase (TAIR:AT3G25585.4)%3B Has 927 Blast hits to 921 proteins in 239 species: Archae - 6%3B Bacteria - 34%3B Metazoa - 364%3B Fungi - 227%3B Plants - 82%3B Viruses - 0%3B Other Eukaryotes - 214 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12739150, PMID:15596101, PMID:15527784, PMID:18650403, PMID:18775970, PMID:23505340, locus:2009947; locus_type=protein_coding
AT1G13560.3	chr1:004638834	0.0	C/4638834-4638855,4638941-4639013,4639120-4639172,4639257-4639315,4639411-4639473,4639570-4639654,4639746-4639786,4639867-4639930,4640046-4640115,4640223-4640291,4640421-4640515,4640594-4640694,4640781-4640803,4640890-4640965,4641069-4641146,4641276-4641326,4641419-4641421	AT1G13560.3 CDS AT1G13560 ID=AT1G13560.3; Parent=AT1G13560; Name=AT1G13560.3; Note=aminoalcoholphosphotransferase 1; symbol=AAPT1; Alias=ATAAPT1; full_name=aminoalcoholphosphotransferase 1; curator_summary=Encodes aminoalcoholphosphotransferase AAPT1.; computational_description=aminoalcoholphosphotransferase 1 (AAPT1)%3B FUNCTIONS IN: phosphatidyltransferase activity%2C phosphotransferase activity%2C for other substituted phosphate groups%3B INVOLVED IN: phospholipid biosynthetic process%3B LOCATED IN: membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Choline/ethanolaminephosphotransferase (InterPro:IPR014472)%2C CDP-alcohol phosphatidyltransferase (InterPro:IPR000462)%3B BEST Arabidopsis thaliana protein match is: aminoalcoholphosphotransferase (TAIR:AT3G25585.4)%3B Has 927 Blast hits to 921 proteins in 239 species: Archae - 6%3B Bacteria - 34%3B Metazoa - 364%3B Fungi - 227%3B Plants - 82%3B Viruses - 0%3B Other Eukaryotes - 214 (source: NCBI BLink).; Dbxref=PMID:12739150, PMID:15596101, PMID:15527784, PMID:18650403, PMID:18775970, PMID:23505340, locus:2009947; locus_type=protein_coding
AT1G13570.1	chr1:004642528	0.0	C/4642528-4642818,4642900-4643058,4643130-4643930	AT1G13570.1 CDS AT1G13570 ID=AT1G13570.1; Parent=AT1G13570; Name=AT1G13570.1; Note=F-box/RNI-like superfamily protein; conf_class=1; computational_description=F-box/RNI-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C FBD (InterPro:IPR013596)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%2C FBD-like (InterPro:IPR006566)%2C Leucine-rich repeat 2 (InterPro:IPR013101)%3B BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT5G56370.2)%3B Has 1866 Blast hits to 1838 proteins in 25 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1866%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:18775970, PMID:23517122, locus:2010032; locus_type=protein_coding
AT1G13570.3	chr1:004642528	0.0	C/4642528-4642818,4642900-4643058,4643130-4643930	AT1G13570.3 CDS AT1G13570 ID=AT1G13570.3; Parent=AT1G13570; Name=AT1G13570.3; Note=F-box/RNI-like superfamily protein; Dbxref=PMID:18775970, PMID:23517122, locus:2010032; computational_description=F-box/RNI-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C FBD (InterPro:IPR013596)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%2C FBD-like (InterPro:IPR006566)%2C Leucine-rich repeat 2 (InterPro:IPR013101)%3B BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT5G56370.2)%3B Has 1866 Blast hits to 1838 proteins in 25 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1866%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; locus_type=protein_coding
AT1G13570.2	chr1:004643052	0.0	C/4643052-4643930	AT1G13570.2 CDS AT1G13570 ID=AT1G13570.2; Parent=AT1G13570; Name=AT1G13570.2; Note=F-box/RNI-like superfamily protein; computational_description=F-box/RNI-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C FBD (InterPro:IPR013596)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%2C FBD-like (InterPro:IPR006566)%2C Leucine-rich repeat 2 (InterPro:IPR013101)%3B BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT5G56370.2)%3B Has 1866 Blast hits to 1838 proteins in 25 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1866%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=PMID:18775970, PMID:23517122, locus:2010032; locus_type=protein_coding
AT1G13580.2	chr1:004645006	0.0	C/4645006-4645037,4645123-4645307,4645390-4645575,4645681-4645836,4645926-4646155,4646628-4646765	AT1G13580.2 CDS AT1G13580 ID=AT1G13580.2; Parent=AT1G13580; Name=AT1G13580.2; Note=LAG1 longevity assurance-like protein; curator_summary=Encodes a ceramide synthase that together with LOH1 is essential for production of ceramides containing Very Long Chain Fatty acid VLCFA-Ceramides(mainly C 22 to 26).; conf_class=2; symbol=LAG13; Alias=LOH3, LAG One Homologue 3; full_name=LAG1 longevity assurance homolog 3; computational_description=LAG1 longevity assurance homolog 3 (LAG13)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: N-terminal protein myristoylation%3B LOCATED IN: endoplasmic reticulum%3B EXPRESSED IN: 16 plant structures%3B EXPRESSED DURING: 10 growth stages%3B CONTAINS InterPro DOMAIN/s: TRAM/LAG1/CLN8 homology domain (InterPro:IPR006634)%3B BEST Arabidopsis thaliana protein match is: TRAM%2C LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (TAIR:AT3G25540.1)%3B Has 1229 Blast hits to 1229 proteins in 221 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 587%3B Fungi - 304%3B Plants - 168%3B Viruses - 3%3B Other Eukaryotes - 167 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12912986, PMID:18643979, PMID:21666002, PMID:21883234, PMID:23505340, locus:2010022; locus_type=protein_coding
AT1G13580.3	chr1:004645006	0.0	C/4645006-4645037,4645123-4645307,4645390-4645575,4645681-4645836,4645926-4646155,4646628-4646765	AT1G13580.3 CDS AT1G13580 ID=AT1G13580.3; Parent=AT1G13580; Name=AT1G13580.3; Note=LAG1 longevity assurance-like protein; curator_summary=Encodes a ceramide synthase that together with LOH1 is essential for production of ceramides containing Very Long Chain Fatty acid VLCFA-Ceramides(mainly C 22 to 26).; conf_class=4; symbol=LAG13; Alias=LOH3, LAG One Homologue 3; full_name=LAG1 longevity assurance homolog 3; computational_description=LAG1 longevity assurance homolog 3 (LAG13)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: N-terminal protein myristoylation%3B LOCATED IN: endoplasmic reticulum%3B EXPRESSED IN: 16 plant structures%3B EXPRESSED DURING: 10 growth stages%3B CONTAINS InterPro DOMAIN/s: TRAM/LAG1/CLN8 homology domain (InterPro:IPR006634)%3B BEST Arabidopsis thaliana protein match is: TRAM%2C LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (TAIR:AT3G25540.1)%3B Has 1229 Blast hits to 1229 proteins in 221 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 587%3B Fungi - 304%3B Plants - 168%3B Viruses - 3%3B Other Eukaryotes - 167 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:12912986, PMID:18643979, PMID:21666002, PMID:21883234, PMID:23505340, locus:2010022; locus_type=protein_coding
AT1G13580.1	chr1:004645380	0.0	C/4645380-4645575,4645681-4645836,4645926-4646155,4646628-4646765	AT1G13580.1 CDS AT1G13580 ID=AT1G13580.1; Parent=AT1G13580; Name=AT1G13580.1; Note=LAG1 longevity assurance-like protein; curator_summary=Encodes a ceramide synthase that together with LOH1 is essential for production of ceramides containing Very Long Chain Fatty acid VLCFA-Ceramides(mainly C 22 to 26).; conf_class=2; symbol=LAG13; Alias=LOH3, LAG One Homologue 3; full_name=LAG1 longevity assurance homolog 3; computational_description=LAG1 longevity assurance homolog 3 (LAG13)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: N-terminal protein myristoylation%3B LOCATED IN: endoplasmic reticulum%3B EXPRESSED IN: 16 plant structures%3B EXPRESSED DURING: 10 growth stages%3B CONTAINS InterPro DOMAIN/s: TRAM/LAG1/CLN8 homology domain (InterPro:IPR006634)%3B BEST Arabidopsis thaliana protein match is: TRAM%2C LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (TAIR:AT3G25540.1)%3B Has 1229 Blast hits to 1229 proteins in 221 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 587%3B Fungi - 304%3B Plants - 168%3B Viruses - 3%3B Other Eukaryotes - 167 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12912986, PMID:18643979, PMID:21666002, PMID:21883234, PMID:23505340, locus:2010022; locus_type=protein_coding
AT1G13590.1	chr1:004647979	0.0	W/4647979-4648104,4648475-4648612	AT1G13590.1 CDS AT1G13590 ID=AT1G13590.1; Parent=AT1G13590; Name=AT1G13590.1; Note=phytosulfokine 1 precursor; curator_summary=Encodes a phytosulfokine-alpha (PSK) precursor%2C a unique plant peptide growth factor first described in Asparagus.; conf_class=1; symbol=PSK1; Alias=ATPSK1, phytosulfokine 1 precursor; full_name=phytosulfokine 1 precursor; computational_description=phytosulfokine 1 precursor (PSK1)%3B FUNCTIONS IN: growth factor activity%3B INVOLVED IN: cell growth%3B LOCATED IN: extracellular matrix%3B EXPRESSED IN: root%3B CONTAINS InterPro DOMAIN/s: Phytosulfokine (InterPro:IPR009438)%3B Has 98 Blast hits to 98 proteins in 21 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 98%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11706167, PMID:16829587, PMID:14701937, locus:2009917; locus_type=protein_coding
AT1G08905.1	chr1:004648903	0.0	W/4648903-4649415	AT1G08905.1 transcript_region AT1G08905 ID=AT1G08905.1; Parent=AT1G08905; computational_description=novel transcribed region; Name=AT1G08905.1; locus_type=novel_transcribed_region
AT1G13600.1	chr1:004650787	0.0	C/4650787-4651377	AT1G13600.1 CDS AT1G13600 ID=AT1G13600.1; Parent=AT1G13600; Name=AT1G13600.1; Note=basic leucine-zipper 58; conf_class=1; symbol=bZIP58; Alias=AtbZIP58, basic leucine-zipper 58; full_name=basic leucine-zipper 58; computational_description=basic leucine-zipper 58 (bZIP58)%3B FUNCTIONS IN: DNA binding%2C protein homodimerization activity%2C protein heterodimerization activity%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B EXPRESSED IN: 16 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827)%2C bZIP transcription factor%2C bZIP-1 (InterPro:IPR011616)%3B BEST Arabidopsis thaliana protein match is: basic leucine-zipper 48 (TAIR:AT2G04038.1)%3B Has 2046 Blast hits to 2038 proteins in 142 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 51%3B Fungi - 55%3B Plants - 1834%3B Viruses - 0%3B Other Eukaryotes - 100 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11118137, PMID:11906833, PMID:15226410, PMID:16489130, PMID:16731568, PMID:16709202, PMID:17337630, PMID:17470057, locus:2009932; locus_type=protein_coding
AT1TE15090	chr1:004651559	0.0	C/4651559-4652147,4659831-4660722	AT1TE15090 transposable_element AT1TE15090 ID=AT1TE15090; Name=AT1TE15090; Alias=ATREP10D
AT1G13605.1	chr1:004658603	0.0	W/4658603-4658651,4658748-4659010	AT1G13605.1 CDS AT1G13605 ID=AT1G13605.1; Parent=AT1G13605; Name=AT1G13605.1; Note=defensin-like protein; curator_summary=Encodes a defensin-like (DEFL) family protein.; conf_class=2; computational_description=LOCATED IN: endomembrane system%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:1009023074; locus_type=protein_coding
AT1TE15095	chr1:004659772	0.0	C/4659772-4659830	AT1TE15095 transposable_element AT1TE15095 ID=AT1TE15095; Name=AT1TE15095; Alias=ATREP3
AT1TE15100	chr1:004660723	0.0	W/4660723-4660763	AT1TE15100 transposable_element AT1TE15100 ID=AT1TE15100; Name=AT1TE15100; Alias=HELITRONY3
AT1TE15105	chr1:004660764	0.0	W/4660764-4660795	AT1TE15105 transposable_element AT1TE15105 ID=AT1TE15105; Name=AT1TE15105; Alias=ATREP10D
AT1G13607.1	chr1:004660778	0.0	W/4660778-4660838,4660941-4661098	AT1G13607.1 CDS AT1G13607 ID=AT1G13607.1; Parent=AT1G13607; Name=AT1G13607.1; Note=Defensin-like (DEFL) family protein; curator_summary=Encodes a defensin-like (DEFL) family protein.; conf_class=1; computational_description=Defensin-like (DEFL) family protein%3B LOCATED IN: endomembrane system%3B BEST Arabidopsis thaliana protein match is: Defensin-like (DEFL) family protein (TAIR:AT1G13609.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:1009023064; locus_type=protein_coding
AT1G13608.1	chr1:004661682	0.0	W/4661682-4661726,4661838-4662029	AT1G13608.1 CDS AT1G13608 ID=AT1G13608.1; Parent=AT1G13608; Name=AT1G13608.1; Note=Defensin-like (DEFL) family protein; curator_summary=Encodes a defensin-like (DEFL) family protein.; conf_class=6; computational_description=Defensin-like (DEFL) family protein%3B BEST Arabidopsis thaliana protein match is: Defensin-like (DEFL) family protein (TAIR:AT1G13609.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).; conf_rating=**; Dbxref=locus:1009023090; locus_type=protein_coding
AT1G13609.1	chr1:004662818	0.0	W/4662818-4662878,4662971-4663146	AT1G13609.1 CDS AT1G13609 ID=AT1G13609.1; Parent=AT1G13609; Name=AT1G13609.1; Note=Defensin-like (DEFL) family protein; curator_summary=Encodes a defensin-like (DEFL) family protein.; conf_class=1; computational_description=Defensin-like (DEFL) family protein%3B LOCATED IN: endomembrane system%3B BEST Arabidopsis thaliana protein match is: Defensin-like (DEFL) family protein (TAIR:AT1G13607.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:1009023151; locus_type=protein_coding
AT1G13609.2	chr1:004662818	0.0	W/4662818-4662840,4662934-4663048	AT1G13609.2 CDS AT1G13609 ID=AT1G13609.2; Parent=AT1G13609; Name=AT1G13609.2; Note=Defensin-like (DEFL) family protein; curator_summary=Encodes a defensin-like (DEFL) family protein.; conf_class=8; computational_description=Defensin-like (DEFL) family protein%3B LOCATED IN: endomembrane system%3B BEST Arabidopsis thaliana protein match is: Defensin-like (DEFL) family protein (TAIR:AT1G13607.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).; conf_rating=*; Dbxref=locus:1009023151; locus_type=protein_coding
AT1G13610.1	chr1:004664008	0.0	C/4664008-4664080,4664203-4664573,4664673-4664720,4664822-4665058,4665276-4665312,4665665-4665975	AT1G13610.1 CDS AT1G13610 ID=AT1G13610.1; Parent=AT1G13610; Name=AT1G13610.1; Note=alpha/beta-Hydrolases superfamily protein; conf_class=2; computational_description=alpha/beta-Hydrolases superfamily protein%3B EXPRESSED IN: cotyledon%2C hypocotyl%2C root%3B CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073)%3B BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G30380.2)%3B Has 4490 Blast hits to 4478 proteins in 963 species: Archae - 8%3B Bacteria - 1669%3B Metazoa - 672%3B Fungi - 266%3B Plants - 333%3B Viruses - 11%3B Other Eukaryotes - 1531 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15681452, PMID:16895613, locus:2009967; locus_type=protein_coding
AT1G13610.2	chr1:004664008	0.0	C/4664008-4664080,4664203-4664573,4664673-4664720,4664822-4665053,4665276-4665312,4665665-4665680	AT1G13610.2 CDS AT1G13610 ID=AT1G13610.2; Parent=AT1G13610; Name=AT1G13610.2; Note=alpha/beta-Hydrolases superfamily protein; conf_class=2; computational_description=alpha/beta-Hydrolases superfamily protein%3B EXPRESSED IN: cotyledon%2C hypocotyl%2C root%3B CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073)%3B BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G30380.2)%3B Has 4490 Blast hits to 4478 proteins in 963 species: Archae - 8%3B Bacteria - 1669%3B Metazoa - 672%3B Fungi - 266%3B Plants - 333%3B Viruses - 11%3B Other Eukaryotes - 1531 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15681452, PMID:16895613, locus:2009967; locus_type=protein_coding
AT1G13620.1	chr1:004668494	0.0	W/4668494-4668572,4668812-4668858,4669022-4669225	AT1G13620.1 CDS AT1G13620 ID=AT1G13620.1; Parent=AT1G13620; Name=AT1G13620.1; Note=root meristem growth factor-like protein; curator_summary=Encodes a root meristem growth factor (RGF). Belongs to a family of functionally redundant homologous peptides that are secreted%2C tyrosine-sulfated%2C and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation. Members of this family include: At5g60810 (RGF1)%2C At1g13620 (RGF2)%2C At2g04025 (RGF3)%2C At3g30350 (RGF4)%2C At5g51451 (RGF5)%2C At4g16515 (RGF6)%2C At3g02240 (RGF7)%2C At2g03830 (RGF8) and At5g64770 (RGF9).; conf_class=1; symbol=RGF2; Alias=GLV5, GOLVEN 5; full_name=root meristem growth factor 2; computational_description=root meristem growth factor 2 (RGF2)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: regulation of root meristem growth%2C positive regulation of gene expression%3B LOCATED IN: endomembrane system%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04025.1)%3B Has 11 Blast hits to 11 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 11%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15225555, PMID:20798316, PMID:22307643, PMID:23370719, locus:2009982; locus_type=protein_coding
AT1G13620.2	chr1:004668760	0.0	W/4668760-4668858,4669022-4669225	AT1G13620.2 CDS AT1G13620 ID=AT1G13620.2; Parent=AT1G13620; Name=AT1G13620.2; Note=root meristem growth factor-like protein; symbol=RGF2; Alias=GLV5, GOLVEN 5; full_name=root meristem growth factor 2; curator_summary=Encodes a root meristem growth factor (RGF). Belongs to a family of functionally redundant homologous peptides that are secreted%2C tyrosine-sulfated%2C and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation. Members of this family include: At5g60810 (RGF1)%2C At1g13620 (RGF2)%2C At2g04025 (RGF3)%2C At3g30350 (RGF4)%2C At5g51451 (RGF5)%2C At4g16515 (RGF6)%2C At3g02240 (RGF7)%2C At2g03830 (RGF8) and At5g64770 (RGF9).; computational_description=root meristem growth factor 2 (RGF2)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: regulation of root meristem growth%2C positive regulation of gene expression%3B LOCATED IN: endomembrane system%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04025.1)%3B Has 11 Blast hits to 11 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 11%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=PMID:15225555, PMID:20798316, PMID:22307643, PMID:23370719, locus:2009982; locus_type=protein_coding
AT1G13630.1	chr1:004669784	0.0	C/4669784-4669852,4670223-4670354,4670443-4672315,4672480-4672826	AT1G13630.1 CDS AT1G13630 ID=AT1G13630.1; Parent=AT1G13630; Name=AT1G13630.1; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; conf_class=6; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G22470.1)%3B Has 58870 Blast hits to 14575 proteins in 299 species: Archae - 3%3B Bacteria - 47%3B Metazoa - 773%3B Fungi - 914%3B Plants - 55536%3B Viruses - 0%3B Other Eukaryotes - 1597 (source: NCBI BLink).; conf_rating=**; Dbxref=locus:2009997; locus_type=protein_coding
AT1G13630.2	chr1:004670308	0.0	C/4670308-4672339,4672480-4672928	AT1G13630.2 CDS AT1G13630 ID=AT1G13630.2; Parent=AT1G13630; Name=AT1G13630.2; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; conf_class=6; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G22470.1)%3B Has 58870 Blast hits to 14575 proteins in 299 species: Archae - 3%3B Bacteria - 47%3B Metazoa - 773%3B Fungi - 914%3B Plants - 55536%3B Viruses - 0%3B Other Eukaryotes - 1597 (source: NCBI BLink).; conf_rating=**; Dbxref=locus:2009997; locus_type=protein_coding
AT1G13630.3	chr1:004670308	0.0	C/4670308-4672389	AT1G13630.3 CDS AT1G13630 ID=AT1G13630.3; Parent=AT1G13630; Name=AT1G13630.3; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G22470.1)%3B Has 58870 Blast hits to 14575 proteins in 299 species: Archae - 3%3B Bacteria - 47%3B Metazoa - 773%3B Fungi - 914%3B Plants - 55536%3B Viruses - 0%3B Other Eukaryotes - 1597 (source: NCBI BLink).; Dbxref=locus:2009997; locus_type=protein_coding
AT1G13630.4	chr1:004670308	0.0	C/4670308-4672358,4672484-4672928	AT1G13630.4 CDS AT1G13630 ID=AT1G13630.4; Parent=AT1G13630; Name=AT1G13630.4; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G22470.1)%3B Has 58870 Blast hits to 14575 proteins in 299 species: Archae - 3%3B Bacteria - 47%3B Metazoa - 773%3B Fungi - 914%3B Plants - 55536%3B Viruses - 0%3B Other Eukaryotes - 1597 (source: NCBI BLink).; Dbxref=locus:2009997; locus_type=protein_coding
AT1G13630.5	chr1:004670308	0.0	C/4670308-4672315,4672480-4672928	AT1G13630.5 CDS AT1G13630 ID=AT1G13630.5; Parent=AT1G13630; Name=AT1G13630.5; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G22470.1)%3B Has 58870 Blast hits to 14575 proteins in 299 species: Archae - 3%3B Bacteria - 47%3B Metazoa - 773%3B Fungi - 914%3B Plants - 55536%3B Viruses - 0%3B Other Eukaryotes - 1597 (source: NCBI BLink).; Dbxref=locus:2009997; locus_type=protein_coding
AT1G13630.6	chr1:004670308	0.0	C/4670308-4672278	AT1G13630.6 CDS AT1G13630 ID=AT1G13630.6; Parent=AT1G13630; Name=AT1G13630.6; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G22470.1)%3B Has 58870 Blast hits to 14575 proteins in 299 species: Archae - 3%3B Bacteria - 47%3B Metazoa - 773%3B Fungi - 914%3B Plants - 55536%3B Viruses - 0%3B Other Eukaryotes - 1597 (source: NCBI BLink).; Dbxref=locus:2009997; locus_type=protein_coding
AT1G13635.1	chr1:004674248	0.0	W/4674248-4674620,4674831-4674888,4675072-4675155,4675241-4675382,4675506-4675784	AT1G13635.1 CDS AT1G13635 ID=AT1G13635.1; Parent=AT1G13635; Name=AT1G13635.1; Note=DNA glycosylase superfamily protein; conf_class=1; computational_description=DNA glycosylase superfamily protein%3B FUNCTIONS IN: DNA-3-methyladenine glycosylase I activity%2C catalytic activity%3B INVOLVED IN: DNA repair%2C base-excision repair%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257)%2C Methyladenine glycosylase (InterPro:IPR005019)%3B BEST Arabidopsis thaliana protein match is: DNA glycosylase superfamily protein (TAIR:AT5G57970.2)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:1006230719; locus_type=protein_coding
AT1G13635.2	chr1:004674248	0.0	W/4674248-4674620,4674831-4674888,4675072-4675155,4675241-4675382,4675506-4675784	AT1G13635.2 CDS AT1G13635 ID=AT1G13635.2; Parent=AT1G13635; Name=AT1G13635.2; Note=DNA glycosylase superfamily protein; conf_class=4; computational_description=DNA glycosylase superfamily protein%3B FUNCTIONS IN: DNA-3-methyladenine glycosylase I activity%2C catalytic activity%3B INVOLVED IN: DNA repair%2C base-excision repair%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257)%2C Methyladenine glycosylase (InterPro:IPR005019)%3B BEST Arabidopsis thaliana protein match is: DNA glycosylase superfamily protein (TAIR:AT5G57970.2)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).; conf_rating=***; Dbxref=locus:1006230719; locus_type=protein_coding
AT1G13640.1	chr1:004677276	0.0	C/4677276-4679144	AT1G13640.1 CDS AT1G13640 ID=AT1G13640.1; Parent=AT1G13640; Name=AT1G13640.1; Note=Phosphatidylinositol 3- and 4-kinase family protein; conf_class=2; computational_description=Phosphatidylinositol 3- and 4-kinase family protein%3B FUNCTIONS IN: inositol or phosphatidylinositol kinase activity%2C phosphotransferase activity%2C alcohol group as acceptor%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Phosphatidylinositol 3-/4-kinase%2C catalytic (InterPro:IPR000403)%3B BEST Arabidopsis thaliana protein match is: phosphoinositide 4-kinase gamma 7 (TAIR:AT2G03890.1)%3B Has 641 Blast hits to 624 proteins in 172 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 171%3B Fungi - 87%3B Plants - 282%3B Viruses - 0%3B Other Eukaryotes - 95 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12226484, PMID:23505340, locus:2023865; locus_type=protein_coding
AT1G13640.2	chr1:004677276	0.0	C/4677276-4679144	AT1G13640.2 CDS AT1G13640 ID=AT1G13640.2; Parent=AT1G13640; Name=AT1G13640.2; Note=Phosphatidylinositol 3- and 4-kinase family protein; Dbxref=PMID:12226484, PMID:23505340, locus:2023865; computational_description=Phosphatidylinositol 3- and 4-kinase family protein%3B FUNCTIONS IN: inositol or phosphatidylinositol kinase activity%2C phosphotransferase activity%2C alcohol group as acceptor%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Phosphatidylinositol 3-/4-kinase%2C catalytic (InterPro:IPR000403)%3B BEST Arabidopsis thaliana protein match is: phosphoinositide 4-kinase gamma 7 (TAIR:AT2G03890.1)%3B Has 641 Blast hits to 624 proteins in 172 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 171%3B Fungi - 87%3B Plants - 282%3B Viruses - 0%3B Other Eukaryotes - 95 (source: NCBI BLink).; locus_type=protein_coding
AT1G13650.1	chr1:004680571	0.0	C/4680571-4680928,4681011-4681492,4681883-4681903	AT1G13650.1 CDS AT1G13650 ID=AT1G13650.1; Parent=AT1G13650; Name=AT1G13650.1; Note=hypothetical protein; conf_class=2; computational_description=BEST Arabidopsis thaliana protein match is: 18S pre-ribosomal assembly protein gar2-related (TAIR:AT2G03810.4)%3B Has 3688 Blast hits to 1629 proteins in 255 species: Archae - 22%3B Bacteria - 222%3B Metazoa - 684%3B Fungi - 292%3B Plants - 62%3B Viruses - 14%3B Other Eukaryotes - 2392 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15310842, PMID:16121258, PMID:18441212, PMID:18650403, PMID:18805992, locus:2023875; locus_type=protein_coding
AT1G13650.2	chr1:004680571	0.0	C/4680571-4680928,4681011-4681492,4681883-4681903	AT1G13650.2 CDS AT1G13650 ID=AT1G13650.2; Parent=AT1G13650; Name=AT1G13650.2; Note=hypothetical protein; conf_class=2; computational_description=BEST Arabidopsis thaliana protein match is: 18S pre-ribosomal assembly protein gar2-related (TAIR:AT2G03810.4)%3B Has 3688 Blast hits to 1629 proteins in 255 species: Archae - 22%3B Bacteria - 222%3B Metazoa - 684%3B Fungi - 292%3B Plants - 62%3B Viruses - 14%3B Other Eukaryotes - 2392 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15310842, PMID:16121258, PMID:18441212, PMID:18650403, PMID:18805992, locus:2023875; locus_type=protein_coding
AT1G13650.3	chr1:004680571	0.0	C/4680571-4680928,4681011-4681498	AT1G13650.3 CDS AT1G13650 ID=AT1G13650.3; Parent=AT1G13650; Name=AT1G13650.3; Note=hypothetical protein; computational_description=BEST Arabidopsis thaliana protein match is: 18S pre-ribosomal assembly protein gar2-related (TAIR:AT2G03810.4)%3B Has 3688 Blast hits to 1629 proteins in 255 species: Archae - 22%3B Bacteria - 222%3B Metazoa - 684%3B Fungi - 292%3B Plants - 62%3B Viruses - 14%3B Other Eukaryotes - 2392 (source: NCBI BLink).; Dbxref=PMID:15310842, PMID:16121258, PMID:18441212, PMID:18650403, PMID:18805992, locus:2023875; locus_type=protein_coding
AT1G13650.4	chr1:004680571	0.0	C/4680571-4680928,4681011-4681498	AT1G13650.4 CDS AT1G13650 ID=AT1G13650.4; Parent=AT1G13650; Name=AT1G13650.4; Note=hypothetical protein; computational_description=BEST Arabidopsis thaliana protein match is: 18S pre-ribosomal assembly protein gar2-related (TAIR:AT2G03810.4)%3B Has 3688 Blast hits to 1629 proteins in 255 species: Archae - 22%3B Bacteria - 222%3B Metazoa - 684%3B Fungi - 292%3B Plants - 62%3B Viruses - 14%3B Other Eukaryotes - 2392 (source: NCBI BLink).; Dbxref=PMID:15310842, PMID:16121258, PMID:18441212, PMID:18650403, PMID:18805992, locus:2023875; locus_type=protein_coding
AT1TE15170	chr1:004683026	0.0	W/4683026-4683401,4684933-4685396	AT1TE15170 transposable_element AT1TE15170 ID=AT1TE15170; Name=AT1TE15170; Alias=AT9MU1
AT1G13660.1	chr1:004683171	0.0	W/4683171-4685640	AT1G13660.1 CDS AT1G13660 ID=AT1G13660.1; Parent=AT1G13660; Name=AT1G13660.1; index=1; computational_description=Mutator-like transposase family%2C has a 2.6e-36 P-value blast match to GB:AAA21566 mudrA of transposon%3DMuDR (MuDr-element) (Zea mays); Dbxref=locus:2825087; Note=transposable_element_gene; locus_type=transposable_element_gene
AT1TE15175	chr1:004683975	0.0	W/4683975-4684349	AT1TE15175 transposable_element AT1TE15175 ID=AT1TE15175; Name=AT1TE15175; Alias=ATMU1
AT1TE15180	chr1:004685519	0.0	W/4685519-4685630	AT1TE15180 transposable_element AT1TE15180 ID=AT1TE15180; Name=AT1TE15180; Alias=AT9NMU1
AT1G13670.1	chr1:004688201	0.0	W/4688201-4688878	AT1G13670.1 CDS AT1G13670 ID=AT1G13670.1; Parent=AT1G13670; Name=AT1G13670.1; Note=hypothetical protein; conf_class=1; computational_description=unknown protein%3B Has 22 Blast hits to 22 proteins in 7 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 22%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:2023892; locus_type=protein_coding
AT1TE15190	chr1:004689801	0.0	C/4689801-4690244	AT1TE15190 transposable_element AT1TE15190 ID=AT1TE15190; Name=AT1TE15190; Alias=BRODYAGA1A
AT1G13680.1	chr1:004690409	0.0	W/4690409-4690501,4690703-4690819,4691247-4691363,4691451-4691549,4691928-4692231,4692319-4692542,4692616-4692702	AT1G13680.1 CDS AT1G13680 ID=AT1G13680.1; Parent=AT1G13680; Name=AT1G13680.1; Note=PLC-like phosphodiesterases superfamily protein; conf_class=2; computational_description=PLC-like phosphodiesterases superfamily protein%3B FUNCTIONS IN: phospholipase C activity%2C phosphoric diester hydrolase activity%3B INVOLVED IN: intracellular signaling pathway%2C lipid metabolic process%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: embryo%2C flower%2C seed%3B EXPRESSED DURING: F mature embryo stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: Phospholipase C%2C phosphatidylinositol-specific %2C X domain (InterPro:IPR000909)%2C PLC-like phosphodiesterase%2C TIM beta/alpha-barrel domain (InterPro:IPR017946)%3B BEST Arabidopsis thaliana protein match is: PLC-like phosphodiesterases superfamily protein (TAIR:AT1G49740.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2023898; locus_type=protein_coding
AT1G13690.1	chr1:004693380	0.0	W/4693380-4693695,4693962-4694179	AT1G13690.1 CDS AT1G13690 ID=AT1G13690.1; Parent=AT1G13690; Name=AT1G13690.1; Note=ATPase E1; curator_summary=AtE1 - stimulates the ATPase activity of DnaK/DnaJ; conf_class=2; symbol=ATE1; full_name=ATPase E1; computational_description=ATPase E1 (ATE1)%3B FUNCTIONS IN: nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C glycine rich protein (InterPro:IPR015465)%2C RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: glycine-rich RNA-binding protein 3 (TAIR:AT5G61030.1)%3B Has 14554 Blast hits to 12500 proteins in 724 species: Archae - 8%3B Bacteria - 1323%3B Metazoa - 7103%3B Fungi - 1824%3B Plants - 2936%3B Viruses - 0%3B Other Eukaryotes - 1360 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2023903; locus_type=protein_coding
AT1G05017.1	chr1:004693764	0.0	C/4693764-4693985	AT1G05017.1 antisense_lncRNA AT1G05017 ID=AT1G05017.1; Parent=AT1G05017; Name=AT1G05017.1; description=Natural antisense transcript overlaps with AT1G13690; Note=Natural antisense transcript overlaps with AT1G13690; locus_type=antisense_long_noncoding_rna
AT1G13700.1	chr1:004694475	0.0	C/4694475-4694972,4695209-4695344,4695428-4695600	AT1G13700.1 CDS AT1G13700 ID=AT1G13700.1; Parent=AT1G13700; Name=AT1G13700.1; Note=6-phosphogluconolactonase 1; curator_summary=Encodes a cytosolic 6-phosphogluconolactonase (PGL) thought to be involved in the oxidative pentose-phosphate pathway (OPPP).; conf_class=2; symbol=PGL1; full_name=6-phosphogluconolactonase 1; computational_description=6-phosphogluconolactonase 1 (PGL1)%3B FUNCTIONS IN: 6-phosphogluconolactonase activity%2C catalytic activity%3B INVOLVED IN: pentose-phosphate shunt%2C carbohydrate metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 11 plant structures%3B EXPRESSED DURING: LP.06 six leaves visible%2C LP.04 four leaves visible%2C 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: 6-phosphogluconolactonase%2C DevB-type (InterPro:IPR005900)%3B BEST Arabidopsis thaliana protein match is: NagB/RpiA/CoA transferase-like superfamily protein (TAIR:AT5G24400.1)%3B Has 3744 Blast hits to 3744 proteins in 1410 species: Archae - 0%3B Bacteria - 2521%3B Metazoa - 189%3B Fungi - 243%3B Plants - 155%3B Viruses - 0%3B Other Eukaryotes - 636 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17630276, PMID:18305208, PMID:24008768, locus:2023842; locus_type=protein_coding
AT1G13700.2	chr1:004694475	0.0	C/4694475-4694972,4695209-4695344,4695428-4695600	AT1G13700.2 CDS AT1G13700 ID=AT1G13700.2; Parent=AT1G13700; Name=AT1G13700.2; Note=6-phosphogluconolactonase 1; symbol=PGL1; full_name=6-phosphogluconolactonase 1; Dbxref=PMID:17630276, PMID:18305208, PMID:24008768, locus:2023842; curator_summary=Encodes a cytosolic 6-phosphogluconolactonase (PGL) thought to be involved in the oxidative pentose-phosphate pathway (OPPP).; computational_description=6-phosphogluconolactonase 1 (PGL1)%3B FUNCTIONS IN: 6-phosphogluconolactonase activity%2C catalytic activity%3B INVOLVED IN: pentose-phosphate shunt%2C carbohydrate metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 11 plant structures%3B EXPRESSED DURING: LP.06 six leaves visible%2C LP.04 four leaves visible%2C 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: 6-phosphogluconolactonase%2C DevB-type (InterPro:IPR005900)%3B BEST Arabidopsis thaliana protein match is: NagB/RpiA/CoA transferase-like superfamily protein (TAIR:AT5G24400.1)%3B Has 3744 Blast hits to 3744 proteins in 1410 species: Archae - 0%3B Bacteria - 2521%3B Metazoa - 189%3B Fungi - 243%3B Plants - 155%3B Viruses - 0%3B Other Eukaryotes - 636 (source: NCBI BLink).; locus_type=protein_coding
AT1G13700.3	chr1:004694475	0.0	C/4694475-4694972,4695209-4695344,4695428-4695600	AT1G13700.3 CDS AT1G13700 ID=AT1G13700.3; Parent=AT1G13700; Name=AT1G13700.3; Note=6-phosphogluconolactonase 1; symbol=PGL1; full_name=6-phosphogluconolactonase 1; Dbxref=PMID:17630276, PMID:18305208, PMID:24008768, locus:2023842; curator_summary=Encodes a cytosolic 6-phosphogluconolactonase (PGL) thought to be involved in the oxidative pentose-phosphate pathway (OPPP).; computational_description=6-phosphogluconolactonase 1 (PGL1)%3B FUNCTIONS IN: 6-phosphogluconolactonase activity%2C catalytic activity%3B INVOLVED IN: pentose-phosphate shunt%2C carbohydrate metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 11 plant structures%3B EXPRESSED DURING: LP.06 six leaves visible%2C LP.04 four leaves visible%2C 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: 6-phosphogluconolactonase%2C DevB-type (InterPro:IPR005900)%3B BEST Arabidopsis thaliana protein match is: NagB/RpiA/CoA transferase-like superfamily protein (TAIR:AT5G24400.1)%3B Has 3744 Blast hits to 3744 proteins in 1410 species: Archae - 0%3B Bacteria - 2521%3B Metazoa - 189%3B Fungi - 243%3B Plants - 155%3B Viruses - 0%3B Other Eukaryotes - 636 (source: NCBI BLink).; locus_type=protein_coding
AT1G05023.1	chr1:004694951	0.0	W/4694951-4695230	AT1G05023.1 antisense_lncRNA AT1G05023 ID=AT1G05023.1; Parent=AT1G05023; Name=AT1G05023.1; description=Natural antisense transcript overlaps with AT1G13700; Note=Natural antisense transcript overlaps with AT1G13700; locus_type=antisense_long_noncoding_rna
AT1G05027.1	chr1:004697501	0.0	C/4697501-4698167	AT1G05027.1 lnc_RNA AT1G05027 ID=AT1G05027.1; Parent=AT1G05027; Name=AT1G05027.1; locus_type=long_noncoding_rna
AT1G13710.1	chr1:004702932	0.0	C/4702932-4703546,4703654-4704592	AT1G13710.1 CDS AT1G13710 ID=AT1G13710.1; Parent=AT1G13710; Name=AT1G13710.1; Note=cytochrome P450%2C family 78%2C subfamily A%2C polypeptide 5; curator_summary=Encodes the cytochrome P450 CYP78A5 monooxygenase. Contributes to the generation of a growth-stimulating signal distinct from the classical phytohormones that prevents proliferation arrest%2C promoting organ growth.; conf_class=2; symbol=CYP78A5; Alias=KLU, KLUH; full_name=cytochrome P450%2C family 78%2C subfamily A%2C polypeptide 5; computational_description=cytochrome P450%2C family 78%2C subfamily A%2C polypeptide 5 (CYP78A5)%3B FUNCTIONS IN: electron carrier activity%2C monooxygenase activity%2C iron ion binding%2C oxygen binding%2C heme binding%3B INVOLVED IN: in 7 processes%3B LOCATED IN: endoplasmic reticulum%3B EXPRESSED IN: 10 plant structures%3B EXPRESSED DURING: F mature embryo stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128)%2C Cytochrome P450%2C E-class%2C group I (InterPro:IPR002401)%2C Cytochrome P450%2C conserved site (InterPro:IPR017972)%3B BEST Arabidopsis thaliana protein match is: cytochrome P450%2C family 78%2C subfamily A%2C polypeptide 10 (TAIR:AT1G74110.1)%3B Has 31179 Blast hits to 31066 proteins in 1571 species: Archae - 49%3B Bacteria - 2905%3B Metazoa - 11364%3B Fungi - 6716%3B Plants - 9120%3B Viruses - 3%3B Other Eukaryotes - 1022 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10476073, PMID:11549767, PMID:15280363, PMID:16297073, PMID:18061566, PMID:18492871, PMID:20139162, PMID:20188559, PMID:20395288, PMID:19892740, PMID:25182975, locus:2023848; locus_type=protein_coding
AT1TE15240	chr1:004706567	0.0	C/4706567-4708276	AT1TE15240 transposable_element AT1TE15240 ID=AT1TE15240; Name=AT1TE15240; Alias=HELITRONY1B
AT1TE15245	chr1:004708277	0.0	W/4708277-4708466	AT1TE15245 transposable_element AT1TE15245 ID=AT1TE15245; Name=AT1TE15245; Alias=ATREP15
AT1G13720.1	chr1:004709635	0.0	W/4709635-4709706	AT1G13720.1 tRNA AT1G13720 ID=AT1G13720.1; Parent=AT1G13720; Note=tRNA-Thr; computational_description=tRNA-Thr (anticodon: CGT); Dbxref=PMID:8980477, PMID:23066098, PMID:8980477, locus:3688823; Name=AT1G13720.1; locus_type=pre_trna
AT1G13730.1	chr1:004710519	0.0	W/4710519-4710698,4710801-4711283,4711368-4711524,4711618-4711739,4711826-4711891,4711978-4712038,4712115-4712332	AT1G13730.1 CDS AT1G13730 ID=AT1G13730.1; Parent=AT1G13730; Name=AT1G13730.1; Note=Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein; conf_class=2; computational_description=Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: transport%2C nucleocytoplasmic transport%3B LOCATED IN: intracellular%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075)%2C RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nuclear transport factor 2%2C Eukaryote (InterPro:IPR018222)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (TAIR:AT2G03640.2)%3B Has 4164 Blast hits to 4034 proteins in 409 species: Archae - 0%3B Bacteria - 260%3B Metazoa - 2015%3B Fungi - 763%3B Plants - 820%3B Viruses - 2%3B Other Eukaryotes - 304 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15695462, locus:2023854; locus_type=protein_coding
AT1G13730.2	chr1:004710519	0.0	W/4710519-4710698,4710801-4711283,4711368-4711524,4711618-4711739,4711826-4711891,4711978-4712038,4712115-4712332	AT1G13730.2 CDS AT1G13730 ID=AT1G13730.2; Parent=AT1G13730; Name=AT1G13730.2; Note=Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein; Dbxref=PMID:15695462, locus:2023854; computational_description=Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: transport%2C nucleocytoplasmic transport%3B LOCATED IN: intracellular%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075)%2C RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nuclear transport factor 2%2C Eukaryote (InterPro:IPR018222)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (TAIR:AT2G03640.2)%3B Has 4164 Blast hits to 4034 proteins in 409 species: Archae - 0%3B Bacteria - 260%3B Metazoa - 2015%3B Fungi - 763%3B Plants - 820%3B Viruses - 2%3B Other Eukaryotes - 304 (source: NCBI BLink).; locus_type=protein_coding
AT1G13740.1	chr1:004713969	0.0	W/4713969-4714599,4714743-4715158	AT1G13740.1 CDS AT1G13740 ID=AT1G13740.1; Parent=AT1G13740; Name=AT1G13740.1; Note=ABI five binding protein 2; curator_summary=Encodes a member of a small plant-specific gene family whose members interact with ABI5 and appear to be involved in mediating stress responses. AFP2 mutants affect a number of ABA mediated processes such as germination and response to osmotic and sugar stress. AFP2 nuclear localization is stress dependent.; conf_class=2; symbol=AFP2; full_name=ABI five binding protein 2; computational_description=ABI five binding protein 2 (AFP2)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1675 (InterPro:IPR012463)%3B BEST Arabidopsis thaliana protein match is: ABI five binding protein (TAIR:AT1G69260.1)%3B Has 207 Blast hits to 201 proteins in 26 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 5%3B Fungi - 6%3B Plants - 185%3B Viruses - 3%3B Other Eukaryotes - 8 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16212609, PMID:17061125, PMID:17195036, PMID:18484180, PMID:20360743, locus:2023860; locus_type=protein_coding
AT1G05033.1	chr1:004714570	0.0	C/4714570-4715063	AT1G05033.1 antisense_lncRNA AT1G05033 ID=AT1G05033.1; Parent=AT1G05033; Name=AT1G05033.1; description=Natural antisense transcript overlaps with AT1G13740; Note=Natural antisense transcript overlaps with AT1G13740; locus_type=antisense_long_noncoding_rna
AT1G13750.1	chr1:004715490	0.0	C/4715490-4715795,4715885-4716320,4716404-4716609,4716703-4716835,4716923-4717134,4717207-4717299,4717397-4717519,4717605-4717671,4717749-4717840,4717918-4718091	AT1G13750.1 CDS AT1G13750 ID=AT1G13750.1; Parent=AT1G13750; Name=AT1G13750.1; Note=Purple acid phosphatases superfamily protein; curator_summary=Encodes a purple acid phosphatase whose expression is responsive to both phosphate (Pi) and phosphite (Phi) in roots.; conf_class=1; Alias=ATPAP1, ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1, PAP1, PURPLE ACID PHOSPHATASE 1; computational_description=Purple acid phosphatases superfamily protein%3B FUNCTIONS IN: hydrolase activity%2C protein serine/threonine phosphatase activity%2C metal ion binding%2C acid phosphatase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Purple acid phosphatase%2C N-terminal (InterPro:IPR015914)%2C Metallophosphoesterase (InterPro:IPR004843)%2C Fibronectin%2C type III (InterPro:IPR003961)%2C Purple acid phosphatase-like%2C N-terminal (InterPro:IPR008963)%3B BEST Arabidopsis thaliana protein match is: purple acid phosphatase 27 (TAIR:AT5G50400.1)%3B Has 1802 Blast hits to 1786 proteins in 349 species: Archae - 1%3B Bacteria - 481%3B Metazoa - 191%3B Fungi - 77%3B Plants - 759%3B Viruses - 0%3B Other Eukaryotes - 293 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12021284, PMID:15769804, PMID:16244908, PMID:16581873, PMID:17085508, PMID:18650403, PMID:19000166, PMID:25697796, locus:2023870; locus_type=protein_coding
AT1G13755.1	chr1:004718761	0.0	C/4718761-4719062,4719181-4719238	AT1G13755.1 CDS AT1G13755 ID=AT1G13755.1; Parent=AT1G13755; Name=AT1G13755.1; Note=Defensin-like (DEFL) family protein; curator_summary=Encodes a defensin-like (DEFL) family protein.; conf_class=1; computational_description=Defensin-like (DEFL) family protein%3B LOCATED IN: endomembrane system%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:1009023105; locus_type=protein_coding
AT1G13760.1	chr1:004720365	0.0	C/4720365-4720423,4720963-4721101	AT1G13760.1 CDS AT1G13760 ID=AT1G13760.1; Parent=AT1G13760; Name=AT1G13760.1; Note=hypothetical protein; conf_class=1; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:2023880; locus_type=protein_coding
AT1G13770.1	chr1:004721717	0.0	W/4721717-4721838,4721948-4722005,4722086-4722145,4722222-4722260,4722351-4722413,4722514-4722570,4722683-4722746,4722842-4722925,4723018-4723100,4723191-4723320,4723396-4723488,4723611-4723749,4723821-4723864,4723966-4724153,4724247-4724345	AT1G13770.1 CDS AT1G13770 ID=AT1G13770.1; Parent=AT1G13770; Name=AT1G13770.1; Note=root UVB sensitive protein (Protein of unknown function%2C DUF647); conf_class=2; symbol=RUS3; full_name=ROOT UV-B SENSITIVE 3; computational_description=ROOT UV-B SENSITIVE 3 (RUS3)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF647 (InterPro:IPR006968)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function%2C DUF647 (TAIR:AT3G45890.1)%3B Has 450 Blast hits to 446 proteins in 132 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 113%3B Fungi - 75%3B Plants - 194%3B Viruses - 0%3B Other Eukaryotes - 68 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:19515790, PMID:22425954, locus:2023885; locus_type=protein_coding
AT1G13770.3	chr1:004721717	0.0	W/4721717-4721838,4721948-4722005,4722086-4722145,4722222-4722260,4722351-4722413,4722514-4722570,4722683-4722746,4722842-4722925,4723018-4723100,4723191-4723320,4723396-4723488,4723611-4723749,4723821-4723989	AT1G13770.3 CDS AT1G13770 ID=AT1G13770.3; Parent=AT1G13770; Name=AT1G13770.3; Note=root UVB sensitive protein (Protein of unknown function%2C DUF647); symbol=RUS3; full_name=ROOT UV-B SENSITIVE 3; computational_description=ROOT UV-B SENSITIVE 3 (RUS3)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF647 (InterPro:IPR006968)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function%2C DUF647 (TAIR:AT3G45890.1)%3B Has 450 Blast hits to 446 proteins in 132 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 113%3B Fungi - 75%3B Plants - 194%3B Viruses - 0%3B Other Eukaryotes - 68 (source: NCBI BLink).; Dbxref=PMID:19515790, PMID:22425954, locus:2023885; locus_type=protein_coding
AT1G13770.4	chr1:004721717	0.0	W/4721717-4721838,4721948-4722005,4722086-4722145,4722222-4722260,4722351-4722413,4722514-4722570,4722683-4722746,4722842-4722925,4723018-4723100,4723191-4723320,4723396-4723488,4723628-4723701	AT1G13770.4 CDS AT1G13770 ID=AT1G13770.4; Parent=AT1G13770; Name=AT1G13770.4; Note=root UVB sensitive protein (Protein of unknown function%2C DUF647); symbol=RUS3; full_name=ROOT UV-B SENSITIVE 3; computational_description=ROOT UV-B SENSITIVE 3 (RUS3)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF647 (InterPro:IPR006968)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function%2C DUF647 (TAIR:AT3G45890.1)%3B Has 450 Blast hits to 446 proteins in 132 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 113%3B Fungi - 75%3B Plants - 194%3B Viruses - 0%3B Other Eukaryotes - 68 (source: NCBI BLink).; Dbxref=PMID:19515790, PMID:22425954, locus:2023885; locus_type=protein_coding
AT1G13770.2	chr1:004722243	0.0	W/4722243-4722260,4722351-4722413,4722514-4722570,4722683-4722746,4722842-4722925,4723018-4723100,4723191-4723320,4723396-4723488,4723611-4723749,4723821-4723864,4723966-4724153,4724247-4724345	AT1G13770.2 CDS AT1G13770 ID=AT1G13770.2; Parent=AT1G13770; Name=AT1G13770.2; Note=root UVB sensitive protein (Protein of unknown function%2C DUF647); conf_class=3; symbol=RUS3; full_name=ROOT UV-B SENSITIVE 3; computational_description=ROOT UV-B SENSITIVE 3 (RUS3)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF647 (InterPro:IPR006968)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function%2C DUF647 (TAIR:AT3G45890.1)%3B Has 450 Blast hits to 446 proteins in 132 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 113%3B Fungi - 75%3B Plants - 194%3B Viruses - 0%3B Other Eukaryotes - 68 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:19515790, PMID:22425954, locus:2023885; locus_type=protein_coding
AT1G13780.1	chr1:004724681	0.0	W/4724681-4724692,4724773-4725708,4725797-4725937,4726033-4726314	AT1G13780.1 CDS AT1G13780 ID=AT1G13780.1; Parent=AT1G13780; Name=AT1G13780.1; Note=F-box/RNI-like/FBD-like domains-containing protein; conf_class=1; computational_description=F-box/RNI-like/FBD-like domains-containing protein%3B CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596)%2C F-box domain%2C cyclin-like (InterPro:IPR001810)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%2C FBD-like (InterPro:IPR006566)%2C Leucine-rich repeat 2 (InterPro:IPR013101)%3B BEST Arabidopsis thaliana protein match is: F-box/FBD-like domains containing protein (TAIR:AT5G27750.1)%3B Has 2022 Blast hits to 1978 proteins in 26 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 2020%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:20032078, locus:2014859; locus_type=protein_coding
AT1G13780.2	chr1:004724681	0.0	W/4724681-4724692,4724773-4725765	AT1G13780.2 CDS AT1G13780 ID=AT1G13780.2; Parent=AT1G13780; Name=AT1G13780.2; Note=F-box/RNI-like/FBD-like domains-containing protein; computational_description=F-box/RNI-like/FBD-like domains-containing protein%3B CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596)%2C F-box domain%2C cyclin-like (InterPro:IPR001810)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%2C FBD-like (InterPro:IPR006566)%2C Leucine-rich repeat 2 (InterPro:IPR013101)%3B BEST Arabidopsis thaliana protein match is: F-box/FBD-like domains containing protein (TAIR:AT5G27750.1)%3B Has 2022 Blast hits to 1978 proteins in 26 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 2020%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; Dbxref=PMID:20032078, locus:2014859; locus_type=protein_coding
AT1G13790.1	chr1:004727438	0.0	W/4727438-4728656,4728748-4728929,4729015-4729083,4729186-4729479,4729692-4729901,4729993-4730229	AT1G13790.1 CDS AT1G13790 ID=AT1G13790.1; Parent=AT1G13790; Name=AT1G13790.1; Note=XH/XS domain-containing protein; curator_summary=Belongs to a subgroup of SGS3-like proteins that act redundantly in RNA-directed DNA methylation: AT1G15910 (FDM1)%2C AT4G00380 (FDM2)%2C AT3G12550 (FDM3)%2C AT1G13790 (FDM4)%2C AT1G80790 (FDM5).; conf_class=2; symbol=FDM4; full_name=factor of DNA methylation 4; computational_description=XH/XS domain-containing protein%3B CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380)%2C Domain of unknown function XH (InterPro:IPR005379)%2C Domain of unknown function%2C putative Zinc finger%2C XS/XH (InterPro:IPR005381)%3B BEST Arabidopsis thaliana protein match is: XH/XS domain-containing protein (TAIR:AT3G48670.2)%3B Has 49019 Blast hits to 30980 proteins in 1872 species: Archae - 565%3B Bacteria - 6337%3B Metazoa - 23607%3B Fungi - 3326%3B Plants - 1659%3B Viruses - 198%3B Other Eukaryotes - 13327 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18502977, PMID:18775970, PMID:22302148, locus:2014754; locus_type=protein_coding
AT1G13790.2	chr1:004727438	0.0	W/4727438-4728656,4728748-4728929,4729015-4729083,4729186-4729479,4729692-4729901,4729993-4730229	AT1G13790.2 CDS AT1G13790 ID=AT1G13790.2; Parent=AT1G13790; Name=AT1G13790.2; Note=XH/XS domain-containing protein; symbol=FDM4; full_name=factor of DNA methylation 4; Dbxref=PMID:18502977, PMID:18775970, PMID:22302148, locus:2014754; curator_summary=Belongs to a subgroup of SGS3-like proteins that act redundantly in RNA-directed DNA methylation: AT1G15910 (FDM1)%2C AT4G00380 (FDM2)%2C AT3G12550 (FDM3)%2C AT1G13790 (FDM4)%2C AT1G80790 (FDM5).; computational_description=XH/XS domain-containing protein%3B CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380)%2C Domain of unknown function XH (InterPro:IPR005379)%2C Domain of unknown function%2C putative Zinc finger%2C XS/XH (InterPro:IPR005381)%3B BEST Arabidopsis thaliana protein match is: XH/XS domain-containing protein (TAIR:AT3G48670.2)%3B Has 49019 Blast hits to 30980 proteins in 1872 species: Archae - 565%3B Bacteria - 6337%3B Metazoa - 23607%3B Fungi - 3326%3B Plants - 1659%3B Viruses - 198%3B Other Eukaryotes - 13327 (source: NCBI BLink).; locus_type=protein_coding
AT1G13805.1	chr1:004730987	0.0	W/4730987-4731055	AT1G13805.1 CDS AT1G13805 ID=AT1G13805.1; Parent=AT1G13805; Name=AT1G13805.1; Note=hypothetical protein; locus_type=protein_coding
AT1G13800.1	chr1:004731056	0.0	C/4731056-4733707	AT1G13800.1 CDS AT1G13800 ID=AT1G13800.1; Parent=AT1G13800; Name=AT1G13800.1; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; curator_summary=Encodes a PPR (pentatricopeptide repeat motif) protein that is essential for the initiation of zygotic embryogenesis.; conf_class=4; symbol=FAC19; full_name=embryonic factor 19; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: mitochondrion%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT2G26790.1)%3B Has 64040 Blast hits to 14329 proteins in 287 species: Archae - 5%3B Bacteria - 54%3B Metazoa - 543%3B Fungi - 727%3B Plants - 60798%3B Viruses - 0%3B Other Eukaryotes - 1913 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:22099059, locus:2014759; locus_type=protein_coding
AT1G13800.2	chr1:004731056	0.0	C/4731056-4733707	AT1G13800.2 CDS AT1G13800 ID=AT1G13800.2; Parent=AT1G13800; Name=AT1G13800.2; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; symbol=FAC19; full_name=embryonic factor 19; Dbxref=PMID:22099059, locus:2014759; curator_summary=Encodes a PPR (pentatricopeptide repeat motif) protein that is essential for the initiation of zygotic embryogenesis.; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: mitochondrion%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT2G26790.1)%3B Has 64040 Blast hits to 14329 proteins in 287 species: Archae - 5%3B Bacteria - 54%3B Metazoa - 543%3B Fungi - 727%3B Plants - 60798%3B Viruses - 0%3B Other Eukaryotes - 1913 (source: NCBI BLink).; locus_type=protein_coding
AT1G13810.1	chr1:004734088	0.0	W/4734088-4734119,4734285-4735164	AT1G13810.1 CDS AT1G13810 ID=AT1G13810.1; Parent=AT1G13810; Name=AT1G13810.1; Note=Restriction endonuclease%2C type II-like superfamily protein; conf_class=2; computational_description=Restriction endonuclease%2C type II-like superfamily protein%3B FUNCTIONS IN: DNA binding%2C nuclease activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: YqaJ viral recombinase family (InterPro:IPR019080)%2C Exonuclease%2C phage-type/RecB%2C C-terminal (InterPro:IPR011604)%2C Restriction endonuclease%2C type II-like (InterPro:IPR011335)%3B BEST Arabidopsis thaliana protein match is: Restriction endonuclease%2C type II-like superfamily protein (TAIR:AT1G67660.1)%3B Has 316 Blast hits to 315 proteins in 62 species: Archae - 0%3B Bacteria - 48%3B Metazoa - 55%3B Fungi - 0%3B Plants - 63%3B Viruses - 14%3B Other Eukaryotes - 136 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2014874; locus_type=protein_coding
AT1G13820.1	chr1:004735622	0.0	W/4735622-4735804,4736054-4736148,4736214-4736311,4736416-4736465,4736543-4736638,4736743-4736832,4736960-4737052,4737133-4737228,4737312-4737377,4737465-4737617	AT1G13820.1 CDS AT1G13820 ID=AT1G13820.1; Parent=AT1G13820; Name=AT1G13820.1; Note=alpha/beta-Hydrolases superfamily protein; conf_class=1; computational_description=alpha/beta-Hydrolases superfamily protein%3B FUNCTIONS IN: hydrolase activity%2C catalytic activity%3B CONTAINS InterPro DOMAIN/s: Epoxide hydrolase-like (InterPro:IPR000639)%2C Alpha/beta hydrolase fold-1 (InterPro:IPR000073)%3B BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G39220.1)%3B Has 7432 Blast hits to 7419 proteins in 1219 species: Archae - 99%3B Bacteria - 5035%3B Metazoa - 262%3B Fungi - 72%3B Plants - 574%3B Viruses - 0%3B Other Eukaryotes - 1390 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:2014774; locus_type=protein_coding
AT1G13825.1	chr1:004738747	0.0	C/4738747-4738752,4738837-4739046,4739156-4739305	AT1G13825.1 CDS AT1G13825 ID=AT1G13825.1; Parent=AT1G13825; Name=AT1G13825.1; Note=hypothetical protein; locus_type=protein_coding
AT1G13825.2	chr1:004738747	0.0	C/4738747-4738752,4738837-4739040,4739156-4739305	AT1G13825.2 CDS AT1G13825 ID=AT1G13825.2; Parent=AT1G13825; Name=AT1G13825.2; Note=hypothetical protein; locus_type=protein_coding
AT1G13830.1	chr1:004739999	0.0	C/4739999-4740260,4740339-4740375,4740461-4740703,4740875-4740926	AT1G13830.1 CDS AT1G13830 ID=AT1G13830.1; Parent=AT1G13830; Name=AT1G13830.1; Note=Carbohydrate-binding X8 domain superfamily protein; conf_class=1; computational_description=Carbohydrate-binding X8 domain superfamily protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 8 plant structures%3B EXPRESSED DURING: 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946)%3B BEST Arabidopsis thaliana protein match is: Carbohydrate-binding X8 domain superfamily protein (TAIR:AT2G03505.1)%3B Has 1996 Blast hits to 1758 proteins in 218 species: Archae - 6%3B Bacteria - 230%3B Metazoa - 175%3B Fungi - 81%3B Plants - 1344%3B Viruses - 45%3B Other Eukaryotes - 115 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:18650403, PMID:20736450, locus:2014829; locus_type=protein_coding
AT1G13830.2	chr1:004739999	0.0	C/4739999-4740260,4740339-4740375,4740461-4740797	AT1G13830.2 CDS AT1G13830 ID=AT1G13830.2; Parent=AT1G13830; Name=AT1G13830.2; Note=Carbohydrate-binding X8 domain superfamily protein; computational_description=Carbohydrate-binding X8 domain superfamily protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 8 plant structures%3B EXPRESSED DURING: 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946)%3B BEST Arabidopsis thaliana protein match is: Carbohydrate-binding X8 domain superfamily protein (TAIR:AT2G03505.1)%3B Has 1996 Blast hits to 1758 proteins in 218 species: Archae - 6%3B Bacteria - 230%3B Metazoa - 175%3B Fungi - 81%3B Plants - 1344%3B Viruses - 45%3B Other Eukaryotes - 115 (source: NCBI BLink).; Dbxref=PMID:18650403, PMID:20736450, locus:2014829; locus_type=protein_coding
AT1G13840.1	chr1:004741999	0.0	W/4741999-4742071	AT1G13840.1 tRNA AT1G13840 ID=AT1G13840.1; Parent=AT1G13840; Note=tRNA-Ala; computational_description=tRNA-Ala (anticodon: TGC); Dbxref=PMID:8980477, PMID:23066098, PMID:8980477, PMID:25596184, locus:3687711; Name=AT1G13840.1; locus_type=pre_trna
AT1G13850.1	chr1:004743095	0.0	W/4743095-4743167	AT1G13850.1 tRNA AT1G13850 ID=AT1G13850.1; Parent=AT1G13850; Note=tRNA-Ala; computational_description=tRNA-Ala (anticodon: TGC); Dbxref=PMID:8980477, PMID:23066098, PMID:8980477, locus:3687714; Name=AT1G13850.1; locus_type=pre_trna
AT1G13860.1	chr1:004743754	0.0	C/4743754-4743903,4744001-4744133,4744261-4744564,4744657-4744814,4744900-4745125,4745237-4745477,4745576-4745711,4745793-4746256	AT1G13860.1 CDS AT1G13860 ID=AT1G13860.1; Parent=AT1G13860; Name=AT1G13860.1; Note=QUASIMODO2 LIKE 1; curator_summary=Encodes QUASIMODO2 LIKE1 (QUL1)%2C a paralog of QUASIMODO2 (QUA2). AT1G78240 (QUA2)%2C AT1G13860 (QUL1) and AT2G03480 (QUL2) form a clade with a possible role in plant vasculature development.; conf_class=2; symbol=QUL1; full_name=QUASIMODO2 LIKE 1; computational_description=QUASIMODO2 LIKE 1 (QUL1)%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: cultured cell%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248%2C methyltransferase putative (InterPro:IPR004159)%3B BEST Arabidopsis thaliana protein match is: QUASIMODO2 LIKE 2 (TAIR:AT2G03480.1)%3B Has 1203 Blast hits to 1184 proteins in 159 species: Archae - 7%3B Bacteria - 235%3B Metazoa - 0%3B Fungi - 10%3B Plants - 903%3B Viruses - 0%3B Other Eukaryotes - 48 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17461780, PMID:20464626, locus:2014789; locus_type=protein_coding
AT1G13860.2	chr1:004743754	0.0	C/4743754-4743903,4744001-4744133,4744261-4744564,4744657-4744814,4744900-4745125,4745237-4745477,4745576-4745707	AT1G13860.2 CDS AT1G13860 ID=AT1G13860.2; Parent=AT1G13860; Name=AT1G13860.2; Note=QUASIMODO2 LIKE 1; curator_summary=Encodes QUASIMODO2 LIKE1 (QUL1)%2C a paralog of QUASIMODO2 (QUA2). AT1G78240 (QUA2)%2C AT1G13860 (QUL1) and AT2G03480 (QUL2) form a clade with a possible role in plant vasculature development.; conf_class=6; symbol=QUL1; full_name=QUASIMODO2 LIKE 1; computational_description=QUASIMODO2 LIKE 1 (QUL1)%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: cultured cell%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248%2C methyltransferase putative (InterPro:IPR004159)%3B BEST Arabidopsis thaliana protein match is: QUASIMODO2 LIKE 2 (TAIR:AT2G03480.1)%3B Has 1203 Blast hits to 1184 proteins in 159 species: Archae - 7%3B Bacteria - 235%3B Metazoa - 0%3B Fungi - 10%3B Plants - 903%3B Viruses - 0%3B Other Eukaryotes - 48 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:17461780, PMID:20464626, locus:2014789; locus_type=protein_coding
AT1G13860.3	chr1:004743754	0.0	C/4743754-4743903,4744001-4744133,4744261-4744564,4744657-4744814,4744900-4745125,4745237-4745477,4745576-4745711,4745793-4746256	AT1G13860.3 CDS AT1G13860 ID=AT1G13860.3; Parent=AT1G13860; Name=AT1G13860.3; Note=QUASIMODO2 LIKE 1; curator_summary=Encodes QUASIMODO2 LIKE1 (QUL1)%2C a paralog of QUASIMODO2 (QUA2). AT1G78240 (QUA2)%2C AT1G13860 (QUL1) and AT2G03480 (QUL2) form a clade with a possible role in plant vasculature development.; conf_class=2; symbol=QUL1; full_name=QUASIMODO2 LIKE 1; computational_description=QUASIMODO2 LIKE 1 (QUL1)%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: cultured cell%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248%2C methyltransferase putative (InterPro:IPR004159)%3B BEST Arabidopsis thaliana protein match is: QUASIMODO2 LIKE 2 (TAIR:AT2G03480.1)%3B Has 1203 Blast hits to 1184 proteins in 159 species: Archae - 7%3B Bacteria - 235%3B Metazoa - 0%3B Fungi - 10%3B Plants - 903%3B Viruses - 0%3B Other Eukaryotes - 48 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17461780, PMID:20464626, locus:2014789; locus_type=protein_coding
AT1G13860.4	chr1:004743754	0.0	C/4743754-4743903,4744001-4744133,4744261-4744564,4744657-4744814,4744900-4745125,4745237-4745477,4745576-4745711,4745793-4746256	AT1G13860.4 CDS AT1G13860 ID=AT1G13860.4; Parent=AT1G13860; Name=AT1G13860.4; Note=QUASIMODO2 LIKE 1; curator_summary=Encodes QUASIMODO2 LIKE1 (QUL1)%2C a paralog of QUASIMODO2 (QUA2). AT1G78240 (QUA2)%2C AT1G13860 (QUL1) and AT2G03480 (QUL2) form a clade with a possible role in plant vasculature development.; conf_class=2; symbol=QUL1; full_name=QUASIMODO2 LIKE 1; computational_description=QUASIMODO2 LIKE 1 (QUL1)%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: cultured cell%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248%2C methyltransferase putative (InterPro:IPR004159)%3B BEST Arabidopsis thaliana protein match is: QUASIMODO2 LIKE 2 (TAIR:AT2G03480.1)%3B Has 1203 Blast hits to 1184 proteins in 159 species: Archae - 7%3B Bacteria - 235%3B Metazoa - 0%3B Fungi - 10%3B Plants - 903%3B Viruses - 0%3B Other Eukaryotes - 48 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17461780, PMID:20464626, locus:2014789; locus_type=protein_coding
AT1G13860.5	chr1:004743754	0.0	C/4743754-4743903,4744001-4744133,4744261-4744564,4744657-4744814,4744900-4745125,4745237-4745477,4745576-4745711,4745793-4746256	AT1G13860.5 CDS AT1G13860 ID=AT1G13860.5; Parent=AT1G13860; Name=AT1G13860.5; Note=QUASIMODO2 LIKE 1; symbol=QUL1; full_name=QUASIMODO2 LIKE 1; Dbxref=PMID:17461780, PMID:20464626, locus:2014789; curator_summary=Encodes QUASIMODO2 LIKE1 (QUL1)%2C a paralog of QUASIMODO2 (QUA2). AT1G78240 (QUA2)%2C AT1G13860 (QUL1) and AT2G03480 (QUL2) form a clade with a possible role in plant vasculature development.; computational_description=QUASIMODO2 LIKE 1 (QUL1)%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: cultured cell%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248%2C methyltransferase putative (InterPro:IPR004159)%3B BEST Arabidopsis thaliana protein match is: QUASIMODO2 LIKE 2 (TAIR:AT2G03480.1)%3B Has 1203 Blast hits to 1184 proteins in 159 species: Archae - 7%3B Bacteria - 235%3B Metazoa - 0%3B Fungi - 10%3B Plants - 903%3B Viruses - 0%3B Other Eukaryotes - 48 (source: NCBI BLink).; locus_type=protein_coding
AT1G13870.1	chr1:004747437	0.0	C/4747437-4748345	AT1G13870.1 CDS AT1G13870 ID=AT1G13870.1; Parent=AT1G13870; Name=AT1G13870.1; Note=KTI12-like%2C chromatin associated protein; curator_summary=Encodes a homolog of the yeast TOT4/KTI12 protein. Yeast TOT4/KTI12 associates with Elongator%2C a multisubunit complex that binds the RNA polymerase II transcription elongation complex. Ds insertion mutant has enlarged shoot apical region%2C 4 to 6 long slender leaves followed by spike-like structures%2C short roots. Mutants also have no ncm5U (5-carbamoylmethyluridine).; conf_class=1; symbol=DRL1; Alias=AtKTI12; full_name=DEFORMED ROOTS AND LEAVES 1; computational_description=DEFORMED ROOTS AND LEAVES 1 (DRL1)%3B CONTAINS InterPro DOMAIN/s: Chromatin associated protein KTI12 (InterPro:IPR013641)%3B Has 345 Blast hits to 340 proteins in 174 species: Archae - 7%3B Bacteria - 2%3B Metazoa - 117%3B Fungi - 134%3B Plants - 50%3B Viruses - 0%3B Other Eukaryotes - 35 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:8392411, PMID:12615938, PMID:15894610, PMID:20836892, PMID:25518926, locus:2014804; locus_type=protein_coding
AT1TE15370	chr1:004748157	0.0	C/4748157-4748407	AT1TE15370 transposable_element AT1TE15370 ID=AT1TE15370; Name=AT1TE15370; Alias=DRL1
AT1G13880.2	chr1:004749183	0.0	W/4749183-4749201,4749592-4749747,4749838-4750967	AT1G13880.2 CDS AT1G13880 ID=AT1G13880.2; Parent=AT1G13880; Name=AT1G13880.2; Note=ELM2 domain-containing protein; Alias=ELM2; computational_description=ELM2 domain-containing protein%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: biological_process unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C ELM2 (InterPro:IPR000949)%3B BEST Arabidopsis thaliana protein match is: ELM2 domain-containing protein (TAIR:AT2G03470.2)%3B Has 146 Blast hits to 146 proteins in 14 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 145%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; Dbxref=PMID:18550839, PMID:18650403, PMID:18775970, PMID:24673199, locus:2014879; locus_type=protein_coding
AT1G13880.1	chr1:004749603	0.0	W/4749603-4749747,4749838-4750967	AT1G13880.1 CDS AT1G13880 ID=AT1G13880.1; Parent=AT1G13880; Name=AT1G13880.1; Note=ELM2 domain-containing protein; conf_class=1; Alias=ELM2; computational_description=ELM2 domain-containing protein%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: biological_process unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C ELM2 (InterPro:IPR000949)%3B BEST Arabidopsis thaliana protein match is: ELM2 domain-containing protein (TAIR:AT2G03470.2)%3B Has 146 Blast hits to 146 proteins in 14 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 145%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:18550839, PMID:18650403, PMID:18775970, PMID:24673199, locus:2014879; locus_type=protein_coding
AT1G13880.3	chr1:004749603	0.0	W/4749603-4749747,4749835-4750967	AT1G13880.3 CDS AT1G13880 ID=AT1G13880.3; Parent=AT1G13880; Name=AT1G13880.3; Note=ELM2 domain-containing protein; Alias=ELM2; computational_description=ELM2 domain-containing protein%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: biological_process unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C ELM2 (InterPro:IPR000949)%3B BEST Arabidopsis thaliana protein match is: ELM2 domain-containing protein (TAIR:AT2G03470.2)%3B Has 146 Blast hits to 146 proteins in 14 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 145%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; Dbxref=PMID:18550839, PMID:18650403, PMID:18775970, PMID:24673199, locus:2014879; locus_type=protein_coding
AT1G13890.1	chr1:004751581	0.0	W/4751581-4751955,4752059-4752152,4752356-4752480,4752564-4752661,4752745-4752844	AT1G13890.1 CDS AT1G13890 ID=AT1G13890.1; Parent=AT1G13890; Name=AT1G13890.1; Note=soluble N-ethylmaleimide-sensitive factor adaptor protein 30; curator_summary=Encodes a member of a gene family homologous to mammalian SNAP25%2C a type of SNARE proteins with two chains. There are three members in Arabidopsis: SNAP30%2C SNAP29%2C and SNAP33.; conf_class=2; symbol=SNAP30; Alias=ATSNAP30; full_name=soluble N-ethylmaleimide-sensitive factor adaptor protein 30; computational_description=soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (SNAP30)%3B FUNCTIONS IN: SNAP receptor activity%3B INVOLVED IN: vesicle-mediated transport%2C cellular membrane fusion%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 7 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%2C seedling growth%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727)%3B BEST Arabidopsis thaliana protein match is: soluble N-ethylmaleimide-sensitive factor adaptor protein 33 (TAIR:AT5G61210.1)%3B Has 915 Blast hits to 914 proteins in 177 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 570%3B Fungi - 86%3B Plants - 163%3B Viruses - 0%3B Other Eukaryotes - 94 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11115874, PMID:15342965, PMID:17071640, PMID:18775970, locus:2014824; locus_type=protein_coding
AT1G13890.2	chr1:004751581	0.0	W/4751581-4751955,4752059-4752152,4752356-4752480,4752564-4752661,4752745-4752844	AT1G13890.2 CDS AT1G13890 ID=AT1G13890.2; Parent=AT1G13890; Name=AT1G13890.2; Note=soluble N-ethylmaleimide-sensitive factor adaptor protein 30; symbol=SNAP30; Alias=ATSNAP30; full_name=soluble N-ethylmaleimide-sensitive factor adaptor protein 30; Dbxref=PMID:11115874, PMID:15342965, PMID:17071640, PMID:18775970, locus:2014824; curator_summary=Encodes a member of a gene family homologous to mammalian SNAP25%2C a type of SNARE proteins with two chains. There are three members in Arabidopsis: SNAP30%2C SNAP29%2C and SNAP33.; computational_description=soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (SNAP30)%3B FUNCTIONS IN: SNAP receptor activity%3B INVOLVED IN: vesicle-mediated transport%2C cellular membrane fusion%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 7 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%2C seedling growth%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727)%3B BEST Arabidopsis thaliana protein match is: soluble N-ethylmaleimide-sensitive factor adaptor protein 33 (TAIR:AT5G61210.1)%3B Has 915 Blast hits to 914 proteins in 177 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 570%3B Fungi - 86%3B Plants - 163%3B Viruses - 0%3B Other Eukaryotes - 94 (source: NCBI BLink).; locus_type=protein_coding
AT1G13900.1	chr1:004753494	0.0	C/4753494-4754768,4754859-4755554	AT1G13900.1 CDS AT1G13900 ID=AT1G13900.1; Parent=AT1G13900; Name=AT1G13900.1; Note=Purple acid phosphatases superfamily protein; curator_summary=Encodes a dual-localized acid phosphatase (mitochondria and chloroplast) that modulates carbon metabolism.; conf_class=1; symbol=PAP2; full_name=purple acid phosphatase 2; computational_description=Purple acid phosphatases superfamily protein%3B FUNCTIONS IN: hydrolase activity%2C protein serine/threonine phosphatase activity%2C metal ion binding%2C acid phosphatase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Purple acid phosphatase%2C N-terminal (InterPro:IPR015914)%2C Metallophosphoesterase (InterPro:IPR004843)%2C Purple acid phosphatase-like%2C N-terminal (InterPro:IPR008963)%3B BEST Arabidopsis thaliana protein match is: purple acid phosphatase 9 (TAIR:AT2G03450.1)%3B Has 1738 Blast hits to 1720 proteins in 355 species: Archae - 1%3B Bacteria - 507%3B Metazoa - 197%3B Fungi - 77%3B Plants - 727%3B Viruses - 0%3B Other Eukaryotes - 229 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12021284, PMID:16244908, PMID:18775970, PMID:22269069, PMID:22472516, PMID:22751362, PMID:24507710, PMID:25173632, locus:2014839; locus_type=protein_coding
AT1G13910.1	chr1:004755955	0.0	W/4755955-4756051,4756124-4756271,4756356-4756427,4756559-4756630,4756700-4756771,4756848-4756991,4757082-4757162,4757227-4757298,4757381-4757452,4757554-4757625,4757724-4757814	AT1G13910.1 CDS AT1G13910 ID=AT1G13910.1; Parent=AT1G13910; Name=AT1G13910.1; Note=Leucine-rich repeat (LRR) family protein; conf_class=2; computational_description=Leucine-rich repeat (LRR) family protein%3B INVOLVED IN: signal transduction%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 7 plant structures%3B EXPRESSED DURING: 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611)%3B BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT5G61240.1)%3B Has 85487 Blast hits to 26338 proteins in 1000 species: Archae - 30%3B Bacteria - 6164%3B Metazoa - 15752%3B Fungi - 920%3B Plants - 57746%3B Viruses - 0%3B Other Eukaryotes - 4875 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11751054, PMID:20226671, PMID:21477822, locus:2014854; locus_type=protein_coding
AT1G13910.2	chr1:004755955	0.0	W/4755955-4756051,4756124-4756271,4756356-4756427,4756559-4756630,4756700-4756771,4756848-4756991,4757082-4757162,4757227-4757298,4757381-4757452,4757554-4757692	AT1G13910.2 CDS AT1G13910 ID=AT1G13910.2; Parent=AT1G13910; Name=AT1G13910.2; Note=Leucine-rich repeat (LRR) family protein; computational_description=Leucine-rich repeat (LRR) family protein%3B INVOLVED IN: signal transduction%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 7 plant structures%3B EXPRESSED DURING: 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611)%3B BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT5G61240.1)%3B Has 85487 Blast hits to 26338 proteins in 1000 species: Archae - 30%3B Bacteria - 6164%3B Metazoa - 15752%3B Fungi - 920%3B Plants - 57746%3B Viruses - 0%3B Other Eukaryotes - 4875 (source: NCBI BLink).; Dbxref=PMID:11751054, PMID:20226671, PMID:21477822, locus:2014854; locus_type=protein_coding
AT1G13920.2	chr1:004758089	0.0	W/4758089-4758213,4758299-4758396,4758488-4758645,4758736-4758835,4758924-4759306	AT1G13920.2 CDS AT1G13920 ID=AT1G13920.2; Parent=AT1G13920; Name=AT1G13920.2; Note=Remorin family protein; computational_description=Remorin family protein%3B CONTAINS InterPro DOMAIN/s: Remorin%2C C-terminal (InterPro:IPR005516)%3B BEST Arabidopsis thaliana protein match is: Remorin family protein (TAIR:AT1G69325.1)%3B Has 2207 Blast hits to 2073 proteins in 300 species: Archae - 0%3B Bacteria - 220%3B Metazoa - 860%3B Fungi - 377%3B Plants - 358%3B Viruses - 3%3B Other Eukaryotes - 389 (source: NCBI BLink).; Dbxref=locus:2014749; locus_type=protein_coding
AT1G13920.3	chr1:004758089	0.0	W/4758089-4758213,4758299-4758396,4758488-4758645,4758736-4758835,4758924-4759306	AT1G13920.3 CDS AT1G13920 ID=AT1G13920.3; Parent=AT1G13920; Name=AT1G13920.3; Note=Remorin family protein; computational_description=Remorin family protein%3B CONTAINS InterPro DOMAIN/s: Remorin%2C C-terminal (InterPro:IPR005516)%3B BEST Arabidopsis thaliana protein match is: Remorin family protein (TAIR:AT1G69325.1)%3B Has 2207 Blast hits to 2073 proteins in 300 species: Archae - 0%3B Bacteria - 220%3B Metazoa - 860%3B Fungi - 377%3B Plants - 358%3B Viruses - 3%3B Other Eukaryotes - 389 (source: NCBI BLink).; Dbxref=locus:2014749; locus_type=protein_coding
AT1G13920.4	chr1:004758089	0.0	W/4758089-4758213,4758299-4758396,4758488-4758645,4758736-4758835,4758924-4759302,4759374-4759455,4759560-4759754	AT1G13920.4 CDS AT1G13920 ID=AT1G13920.4; Parent=AT1G13920; Name=AT1G13920.4; Note=Remorin family protein; computational_description=Remorin family protein%3B CONTAINS InterPro DOMAIN/s: Remorin%2C C-terminal (InterPro:IPR005516)%3B BEST Arabidopsis thaliana protein match is: Remorin family protein (TAIR:AT1G69325.1)%3B Has 2207 Blast hits to 2073 proteins in 300 species: Archae - 0%3B Bacteria - 220%3B Metazoa - 860%3B Fungi - 377%3B Plants - 358%3B Viruses - 3%3B Other Eukaryotes - 389 (source: NCBI BLink).; Dbxref=locus:2014749; locus_type=protein_coding
AT1G13920.1	chr1:004758188	0.0	W/4758188-4758213,4758299-4758396,4758488-4758645,4758736-4758835,4758924-4759302,4759374-4759455,4759560-4759754	AT1G13920.1 CDS AT1G13920 ID=AT1G13920.1; Parent=AT1G13920; Name=AT1G13920.1; Note=Remorin family protein; conf_class=6; computational_description=Remorin family protein%3B CONTAINS InterPro DOMAIN/s: Remorin%2C C-terminal (InterPro:IPR005516)%3B BEST Arabidopsis thaliana protein match is: Remorin family protein (TAIR:AT1G69325.1)%3B Has 2207 Blast hits to 2073 proteins in 300 species: Archae - 0%3B Bacteria - 220%3B Metazoa - 860%3B Fungi - 377%3B Plants - 358%3B Viruses - 3%3B Other Eukaryotes - 389 (source: NCBI BLink).; conf_rating=**; Dbxref=locus:2014749; locus_type=protein_coding
AT1G13920.5	chr1:004758188	0.0	W/4758188-4758213,4758299-4758396,4758488-4758645,4758736-4758835,4758924-4759306	AT1G13920.5 CDS AT1G13920 ID=AT1G13920.5; Parent=AT1G13920; Name=AT1G13920.5; Note=Remorin family protein; computational_description=Remorin family protein%3B CONTAINS InterPro DOMAIN/s: Remorin%2C C-terminal (InterPro:IPR005516)%3B BEST Arabidopsis thaliana protein match is: Remorin family protein (TAIR:AT1G69325.1)%3B Has 2207 Blast hits to 2073 proteins in 300 species: Archae - 0%3B Bacteria - 220%3B Metazoa - 860%3B Fungi - 377%3B Plants - 358%3B Viruses - 3%3B Other Eukaryotes - 389 (source: NCBI BLink).; Dbxref=locus:2014749; locus_type=protein_coding
AT1G13920.6	chr1:004758188	0.0	W/4758188-4758213,4758299-4758396,4758488-4758645,4758736-4758835,4758924-4759306	AT1G13920.6 CDS AT1G13920 ID=AT1G13920.6; Parent=AT1G13920; Name=AT1G13920.6; Note=Remorin family protein; computational_description=Remorin family protein%3B CONTAINS InterPro DOMAIN/s: Remorin%2C C-terminal (InterPro:IPR005516)%3B BEST Arabidopsis thaliana protein match is: Remorin family protein (TAIR:AT1G69325.1)%3B Has 2207 Blast hits to 2073 proteins in 300 species: Archae - 0%3B Bacteria - 220%3B Metazoa - 860%3B Fungi - 377%3B Plants - 358%3B Viruses - 3%3B Other Eukaryotes - 389 (source: NCBI BLink).; Dbxref=locus:2014749; locus_type=protein_coding
AT1G13920.7	chr1:004758188	0.0	W/4758188-4758213,4758299-4758396,4758488-4758645,4758736-4758835,4758924-4759302,4759374-4759494	AT1G13920.7 CDS AT1G13920 ID=AT1G13920.7; Parent=AT1G13920; Name=AT1G13920.7; Note=Remorin family protein; computational_description=Remorin family protein%3B CONTAINS InterPro DOMAIN/s: Remorin%2C C-terminal (InterPro:IPR005516)%3B BEST Arabidopsis thaliana protein match is: Remorin family protein (TAIR:AT1G69325.1)%3B Has 2207 Blast hits to 2073 proteins in 300 species: Archae - 0%3B Bacteria - 220%3B Metazoa - 860%3B Fungi - 377%3B Plants - 358%3B Viruses - 3%3B Other Eukaryotes - 389 (source: NCBI BLink).; Dbxref=locus:2014749; locus_type=protein_coding
AT1G13930.1	chr1:004761091	0.0	W/4761091-4761558	AT1G13930.1 CDS AT1G13930 ID=AT1G13930.1; Parent=AT1G13930; Name=AT1G13930.1; Note=oleosin-B3-like protein; curator_summary=Involved in response to salt stress. Knockout mutants are hypersensitive to salt stress.; conf_class=1; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: response to cadmium ion%2C response to salt stress%3B LOCATED IN: chloroplast%2C chloroplast stroma%2C plasma membrane%2C chloroplast envelope%3B EXPRESSED IN: 27 plant structures%3B EXPRESSED DURING: 14 growth stages%3B BEST Arabidopsis thaliana protein match is: nodulin-related protein 1 (TAIR:AT2G03440.1)%3B Has 64 Blast hits to 64 proteins in 17 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 3%3B Plants - 61%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12609039, PMID:14500793, PMID:14585825, PMID:14973164, PMID:15060130, PMID:15276459, PMID:15489280, PMID:16502469, PMID:16500996, PMID:16461388, PMID:16623895, PMID:16972165, PMID:17888165, PMID:17828791, PMID:18650403, PMID:18643972, PMID:18633119, PMID:24064926, locus:2035837; locus_type=protein_coding
AT1G13930.2	chr1:004761091	0.0	W/4761091-4761558	AT1G13930.2 CDS AT1G13930 ID=AT1G13930.2; Parent=AT1G13930; Name=AT1G13930.2; Note=oleosin-B3-like protein; curator_summary=Involved in response to salt stress. Knockout mutants are hypersensitive to salt stress.; conf_class=3; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: response to cadmium ion%2C response to salt stress%3B LOCATED IN: chloroplast%2C chloroplast stroma%2C plasma membrane%2C chloroplast envelope%3B EXPRESSED IN: 27 plant structures%3B EXPRESSED DURING: 14 growth stages%3B BEST Arabidopsis thaliana protein match is: nodulin-related protein 1 (TAIR:AT2G03440.1)%3B Has 64 Blast hits to 64 proteins in 17 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 3%3B Plants - 61%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12609039, PMID:14500793, PMID:14585825, PMID:14973164, PMID:15060130, PMID:15276459, PMID:15489280, PMID:16502469, PMID:16500996, PMID:16461388, PMID:16623895, PMID:16972165, PMID:17888165, PMID:17828791, PMID:18650403, PMID:18643972, PMID:18633119, PMID:24064926, locus:2035837; locus_type=protein_coding
AT1G13930.3	chr1:004761091	0.0	W/4761091-4761558	AT1G13930.3 CDS AT1G13930 ID=AT1G13930.3; Parent=AT1G13930; Name=AT1G13930.3; Note=oleosin-B3-like protein; curator_summary=Involved in response to salt stress. Knockout mutants are hypersensitive to salt stress.; conf_class=4; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: response to cadmium ion%2C response to salt stress%3B LOCATED IN: chloroplast%2C chloroplast stroma%2C plasma membrane%2C chloroplast envelope%3B EXPRESSED IN: 27 plant structures%3B EXPRESSED DURING: 14 growth stages%3B BEST Arabidopsis thaliana protein match is: nodulin-related protein 1 (TAIR:AT2G03440.1)%3B Has 64 Blast hits to 64 proteins in 17 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 3%3B Plants - 61%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:12609039, PMID:14500793, PMID:14585825, PMID:14973164, PMID:15060130, PMID:15276459, PMID:15489280, PMID:16502469, PMID:16500996, PMID:16461388, PMID:16623895, PMID:16972165, PMID:17888165, PMID:17828791, PMID:18650403, PMID:18643972, PMID:18633119, PMID:24064926, locus:2035837; locus_type=protein_coding
AT1G13940.1	chr1:004762703	0.0	C/4762703-4764768,4764878-4765589,4765684-4765923	AT1G13940.1 CDS AT1G13940 ID=AT1G13940.1; Parent=AT1G13940; Name=AT1G13940.1; Note=T-box transcription factor%2C putative (DUF863); conf_class=4; computational_description=Plant protein of unknown function (DUF863)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF863%2C plant (InterPro:IPR008581)%3B BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF863) (TAIR:AT1G69360.1)%3B Has 222 Blast hits to 202 proteins in 28 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 12%3B Fungi - 2%3B Plants - 194%3B Viruses - 0%3B Other Eukaryotes - 10 (source: NCBI BLink).; conf_rating=***; Dbxref=locus:2014769; locus_type=protein_coding
AT1G13940.2	chr1:004762703	0.0	C/4762703-4764768,4764878-4765589,4765684-4765923	AT1G13940.2 CDS AT1G13940 ID=AT1G13940.2; Parent=AT1G13940; Name=AT1G13940.2; Note=T-box transcription factor%2C putative (DUF863); Dbxref=locus:2014769; computational_description=Plant protein of unknown function (DUF863)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF863%2C plant (InterPro:IPR008581)%3B BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF863) (TAIR:AT1G69360.1)%3B Has 222 Blast hits to 202 proteins in 28 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 12%3B Fungi - 2%3B Plants - 194%3B Viruses - 0%3B Other Eukaryotes - 10 (source: NCBI BLink).; locus_type=protein_coding
AT1TE15440	chr1:004769700	0.0	C/4769700-4770059	AT1TE15440 transposable_element AT1TE15440 ID=AT1TE15440; Name=AT1TE15440; Alias=ATREP4
AT1TE15445	chr1:004770060	0.0	C/4770060-4770663	AT1TE15445 transposable_element AT1TE15445 ID=AT1TE15445; Name=AT1TE15445; Alias=ATREP2
AT1TE15450	chr1:004770664	0.0	C/4770664-4770834	AT1TE15450 transposable_element AT1TE15450 ID=AT1TE15450; Name=AT1TE15450; Alias=ATREP2A
AT1TE15455	chr1:004770835	0.0	W/4770835-4770904	AT1TE15455 transposable_element AT1TE15455 ID=AT1TE15455; Name=AT1TE15455; Alias=ATREP3
AT1G05037.1	chr1:004772747	0.0	C/4772747-4772952	AT1G05037.1 lnc_RNA AT1G05037 ID=AT1G05037.1; Parent=AT1G05037; Name=AT1G05037.1; locus_type=long_noncoding_rna
AT1G13950.1	chr1:004773631	0.0	W/4773631-4773750,4774022-4774144,4774238-4774294,4774368-4774442,4774567-4774668	AT1G13950.1 CDS AT1G13950 ID=AT1G13950.1; Parent=AT1G13950; Name=AT1G13950.1; Note=eukaryotic elongation factor 5A-1; curator_summary=Encodes eukaryotic translation initiation factor 5A (EIF-5A).In mammalian cells it functions as a shuttle protein that translocates mRNA from the nucleus to cytoplasmic ribosomes. Overexpression results in an increase in both primary and secondary xylem formation. In RNAi suppressed lines%2C xylem formation is reduced.; conf_class=2; symbol=ELF5A-1; Alias=ATELF5A-1, EUKARYOTIC ELONGATION FACTOR 5A-1, EIF-5A, EIF5A, EUKARYOTIC ELONGATION FACTOR 5A; full_name=eukaryotic elongation factor 5A-1; computational_description=eukaryotic elongation factor 5A-1 (ELF5A-1)%3B FUNCTIONS IN: ribosome binding%2C RNA binding%2C translation elongation factor activity%2C translation initiation factor activity%3B INVOLVED IN: translational initiation%2C xylem development%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 18 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Nucleic acid-binding%2C OB-fold (InterPro:IPR012340)%2C Translation elongation factor%2C IF5A%2C hypusine site (InterPro:IPR019769)%2C Translation protein SH3-like%2C subgroup (InterPro:IPR014722)%2C Translation elongation factor%2C IF5A (InterPro:IPR001884)%2C Translation elongation factor%2C IF5A C-terminal (InterPro:IPR020189)%2C Translation protein SH3-like (InterPro:IPR008991)%2C Nucleic acid-binding%2C OB-fold-like (InterPro:IPR016027)%2C KOW (InterPro:IPR005824)%3B BEST Arabidopsis thaliana protein match is: eukaryotic elongation factor 5A-3 (TAIR:AT1G69410.1)%3B Has 1356 Blast hits to 1355 proteins in 415 species: Archae - 264%3B Bacteria - 0%3B Metazoa - 366%3B Fungi - 246%3B Plants - 261%3B Viruses - 0%3B Other Eukaryotes - 219 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15799777, PMID:15965014, PMID:11278418, PMID:17513484, PMID:18304977, PMID:18633122, PMID:18775970, PMID:20018887, PMID:20492553, PMID:21107886, PMID:21383540, PMID:25559189, locus:2014784; locus_type=protein_coding
AT1G13960.1	chr1:004776622	0.0	W/4776622-4777068,4777743-4778416,4778499-4778663,4778785-4779043	AT1G13960.1 CDS AT1G13960 ID=AT1G13960.1; Parent=AT1G13960; Name=AT1G13960.1; Note=WRKY DNA-binding protein 4; curator_summary=Encodes WRKY DNA-binding protein 4 (WRKY4).; conf_class=1; symbol=WRKY4; full_name=WRKY DNA-binding protein 4; computational_description=WRKY DNA-binding protein 4 (WRKY4)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 10 growth stages%3B CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657)%3B BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 3 (TAIR:AT2G03340.1)%3B Has 5876 Blast hits to 3214 proteins in 234 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 44%3B Fungi - 17%3B Plants - 5749%3B Viruses - 0%3B Other Eukaryotes - 66 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:10785665, PMID:11118137, PMID:14576160, PMID:15705956, PMID:16367961, PMID:18570649, PMID:18775970, PMID:22037706, PMID:22286136, PMID:22219184, PMID:23660666, PMID:24377444, locus:2014799; locus_type=protein_coding
AT1G13960.2	chr1:004777755	0.0	W/4777755-4778416,4778499-4778663,4778785-4779043	AT1G13960.2 CDS AT1G13960 ID=AT1G13960.2; Parent=AT1G13960; Name=AT1G13960.2; Note=WRKY DNA-binding protein 4; curator_summary=Encodes WRKY DNA-binding protein 4 (WRKY4).; conf_class=1; symbol=WRKY4; full_name=WRKY DNA-binding protein 4; computational_description=WRKY DNA-binding protein 4 (WRKY4)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 10 growth stages%3B CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657)%3B BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 3 (TAIR:AT2G03340.1)%3B Has 5876 Blast hits to 3214 proteins in 234 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 44%3B Fungi - 17%3B Plants - 5749%3B Viruses - 0%3B Other Eukaryotes - 66 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:10785665, PMID:11118137, PMID:14576160, PMID:15705956, PMID:16367961, PMID:18570649, PMID:18775970, PMID:22037706, PMID:22286136, PMID:22219184, PMID:23660666, PMID:24377444, locus:2014799; locus_type=protein_coding
AT1G13970.1	chr1:004779742	0.0	C/4779742-4779852,4779950-4780072,4780166-4780360,4780439-4780739,4780830-4780968,4781060-4781329,4781414-4781500,4781594-4781882	AT1G13970.1 CDS AT1G13970 ID=AT1G13970.1; Parent=AT1G13970; Name=AT1G13970.1; Note=beta-hexosaminidase (DUF1336); conf_class=2; computational_description=Protein of unknown function (DUF1336)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: N-terminal protein myristoylation%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 10 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1336 (InterPro:IPR009769)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1336) (TAIR:AT3G29180.2)%3B Has 292 Blast hits to 292 proteins in 28 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1%3B Fungi - 2%3B Plants - 248%3B Viruses - 0%3B Other Eukaryotes - 41 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12912986, PMID:14576160, PMID:18775970, locus:2014819; locus_type=protein_coding
AT1TE15500	chr1:004785103	0.0	C/4785103-4785157	AT1TE15500 transposable_element AT1TE15500 ID=AT1TE15500; Name=AT1TE15500; Alias=HELITRONY1D
AT1TE15505	chr1:004785160	0.0	C/4785160-4785273	AT1TE15505 transposable_element AT1TE15505 ID=AT1TE15505; Name=AT1TE15505; Alias=ATREP3
AT1TE15510	chr1:004785274	0.0	W/4785274-4787837	AT1TE15510 transposable_element AT1TE15510 ID=AT1TE15510; Name=AT1TE15510; Alias=ATREP3
AT1TE15515	chr1:004787838	0.0	W/4787838-4788049	AT1TE15515 transposable_element AT1TE15515 ID=AT1TE15515; Name=AT1TE15515; Alias=ATREP5
AT1G13980.1	chr1:004789587	0.0	W/4789587-4790324,4790780-4794397	AT1G13980.1 CDS AT1G13980 ID=AT1G13980.1; Parent=AT1G13980; Name=AT1G13980.1; Note=sec7 domain-containing protein; curator_summary=Encodes a GDP/GTP exchange factor for small G-proteins of the ADP ribosylation factor (RAF) class%2C and as regulator of intracellular trafficking. Homologous to Sec7p and YEC2 from yeast. Involved in the specification of apical-basal pattern formation. Essential for cell division%2C expansion and adhesion. It appears that heteotypic binding between the DCB and C-terminal domains of two GNOM proteins is required for membrane association%2C however%2C GNOM appears to exist predominantly as a heterodimer formed through DCB-DCB interactions.; conf_class=2; symbol=GN; Alias=EMB30, EMBRYO DEFECTIVE 30, VAN7, VASCULAR NETWORK 7; full_name=GNOM; computational_description=GNOM (GN)%3B FUNCTIONS IN: protein homodimerization activity%2C GTP:GDP antiporter activity%3B INVOLVED IN: in 13 processes%3B LOCATED IN: intracellular%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: SEC7-like (InterPro:IPR000904)%3B BEST Arabidopsis thaliana protein match is: GNOM-like 1 (TAIR:AT5G39500.1)%3B Has 2876 Blast hits to 2436 proteins in 245 species: Archae - 0%3B Bacteria - 32%3B Metazoa - 1502%3B Fungi - 690%3B Plants - 264%3B Viruses - 0%3B Other Eukaryotes - 388 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10887076, PMID:10716449, PMID:10715321, PMID:10645417, PMID:10514379, PMID:9368412, PMID:8628228, PMID:8020095, PMID:11090208, PMID:12271078, PMID:12239400, PMID:12553910, PMID:12553900, PMID:14681187, PMID:12878008, PMID:15743878, PMID:15923323, PMID:16553903, PMID:16698946, PMID:17084699, PMID:18203920, PMID:18239134, PMID:16936718, PMID:18394892, PMID:18775970, PMID:19004783, PMID:17653190, PMID:19230664, PMID:19686373, PMID:19704748, PMID:20040538, PMID:20036441, PMID:20562236, PMID:21138974, PMID:21569134, PMID:21118984, PMID:21940997, PMID:21631728, PMID:22589469, PMID:23012350, PMID:23263156, PMID:23390202, PMID:24388525, PMID:25012191, PMID:25304201, PMID:24453227, PMID:25646449, locus:2035853; locus_type=protein_coding
AT1G13980.2	chr1:004789587	0.0	W/4789587-4790324,4790780-4794397	AT1G13980.2 CDS AT1G13980 ID=AT1G13980.2; Parent=AT1G13980; Name=AT1G13980.2; Note=sec7 domain-containing protein; curator_summary=Encodes a GDP/GTP exchange factor for small G-proteins of the ADP ribosylation factor (RAF) class%2C and as regulator of intracellular trafficking. Homologous to Sec7p and YEC2 from yeast. Involved in the specification of apical-basal pattern formation. Essential for cell division%2C expansion and adhesion. It appears that heteotypic binding between the DCB and C-terminal domains of two GNOM proteins is required for membrane association%2C however%2C GNOM appears to exist predominantly as a heterodimer formed through DCB-DCB interactions.; conf_class=2; symbol=GN; Alias=EMB30, EMBRYO DEFECTIVE 30, VAN7, VASCULAR NETWORK 7; full_name=GNOM; computational_description=GNOM (GN)%3B FUNCTIONS IN: protein homodimerization activity%2C GTP:GDP antiporter activity%3B INVOLVED IN: in 13 processes%3B LOCATED IN: intracellular%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: SEC7-like (InterPro:IPR000904)%3B BEST Arabidopsis thaliana protein match is: GNOM-like 1 (TAIR:AT5G39500.1)%3B Has 2876 Blast hits to 2436 proteins in 245 species: Archae - 0%3B Bacteria - 32%3B Metazoa - 1502%3B Fungi - 690%3B Plants - 264%3B Viruses - 0%3B Other Eukaryotes - 388 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10887076, PMID:10716449, PMID:10715321, PMID:10645417, PMID:10514379, PMID:9368412, PMID:8628228, PMID:8020095, PMID:11090208, PMID:12271078, PMID:12239400, PMID:12553910, PMID:12553900, PMID:14681187, PMID:12878008, PMID:15743878, PMID:15923323, PMID:16553903, PMID:16698946, PMID:17084699, PMID:18203920, PMID:18239134, PMID:16936718, PMID:18394892, PMID:18775970, PMID:19004783, PMID:17653190, PMID:19230664, PMID:19686373, PMID:19704748, PMID:20040538, PMID:20036441, PMID:20562236, PMID:21138974, PMID:21569134, PMID:21118984, PMID:21940997, PMID:21631728, PMID:22589469, PMID:23012350, PMID:23263156, PMID:23390202, PMID:24388525, PMID:25012191, PMID:25304201, PMID:24453227, PMID:25646449, locus:2035853; locus_type=protein_coding
AT1G13990.1	chr1:004794810	0.0	W/4794810-4795191,4795779-4795878,4795960-4796077,4796155-4796250,4796339-4796476	AT1G13990.1 CDS AT1G13990 ID=AT1G13990.1; Parent=AT1G13990; Name=AT1G13990.1; Note=plant/protein; conf_class=2; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3110 (InterPro:IPR021503)%3B Has 25 Blast hits to 25 proteins in 8 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 25%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12753585, PMID:14576160, PMID:14617064, PMID:16776300, PMID:18567827, PMID:18650403, PMID:20736450, locus:2014809; locus_type=protein_coding
AT1G13990.2	chr1:004794810	0.0	W/4794810-4795191,4795282-4795319,4795494-4795539,4795779-4795878,4795960-4796077,4796155-4796250,4796339-4796476	AT1G13990.2 CDS AT1G13990 ID=AT1G13990.2; Parent=AT1G13990; Name=AT1G13990.2; Note=plant/protein; conf_class=6; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3110 (InterPro:IPR021503)%3B Has 25 Blast hits to 25 proteins in 8 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 25%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:12753585, PMID:14576160, PMID:14617064, PMID:16776300, PMID:18567827, PMID:18650403, PMID:20736450, locus:2014809; locus_type=protein_coding
AT1G13990.3	chr1:004794810	0.0	W/4794810-4795191,4795282-4795319,4795494-4795565,4795779-4795816,4795915-4796077,4796155-4796250,4796339-4796476	AT1G13990.3 CDS AT1G13990 ID=AT1G13990.3; Parent=AT1G13990; Name=AT1G13990.3; Note=plant/protein; conf_class=6; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3110 (InterPro:IPR021503)%3B Has 25 Blast hits to 25 proteins in 8 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 25%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:12753585, PMID:14576160, PMID:14617064, PMID:16776300, PMID:18567827, PMID:18650403, PMID:20736450, locus:2014809; locus_type=protein_coding
AT1G14000.1	chr1:004797606	0.0	W/4797606-4797923,4798032-4798106,4798364-4798480,4798583-4798677,4798803-4798923,4799002-4799081,4799169-4799228,4799318-4799439,4799543-4799628,4799730-4799845,4799917-4800043	AT1G14000.1 CDS AT1G14000 ID=AT1G14000.1; Parent=AT1G14000; Name=AT1G14000.1; Note=VH1-interacting kinase; curator_summary=Encodes a protein with similarity to members of the C1 subgroup of MAP kinase kinase kinases. Interacts physically with the receptor kinase BRL2/VH1 and appears to be involved in auxin and brassinosteriod signaling.; conf_class=2; symbol=VIK; full_name=VH1-interacting kinase; computational_description=VH1-interacting kinase (VIK)%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Integrin-linked protein kinase (InterPro:IPR016253)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Ankyrin repeat-containing domain (InterPro:IPR020683)%2C Ankyrin repeat (InterPro:IPR002110)%3B BEST Arabidopsis thaliana protein match is: Integrin-linked protein kinase family (TAIR:AT3G58760.1)%3B Has 139285 Blast hits to 133759 proteins in 5118 species: Archae - 180%3B Bacteria - 15286%3B Metazoa - 53967%3B Fungi - 12530%3B Plants - 33711%3B Viruses - 527%3B Other Eukaryotes - 23084 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12119167, PMID:16429265, PMID:17397506, PMID:19000166, PMID:20118269, PMID:21477822, PMID:21838775, locus:2014849; locus_type=protein_coding
AT1G14010.1	chr1:004800385	0.0	C/4800385-4800529,4800626-4800702,4801289-4801498,4801584-4801790	AT1G14010.1 CDS AT1G14010 ID=AT1G14010.1; Parent=AT1G14010; Name=AT1G14010.1; Note=emp24/gp25L/p24 family/GOLD family protein; conf_class=2; computational_description=emp24/gp25L/p24 family/GOLD family protein%3B FUNCTIONS IN: protein transmembrane transporter activity%3B INVOLVED IN: intracellular protein transport%2C transport%3B LOCATED IN: endoplasmic reticulum%2C membrane%3B EXPRESSED IN: guard cell%2C callus%3B CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038)%2C emp24/gp25L/p24 (InterPro:IPR000348)%3B BEST Arabidopsis thaliana protein match is: emp24/gp25L/p24 family/GOLD family protein (TAIR:AT1G26690.1)%3B Has 1568 Blast hits to 1566 proteins in 238 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 707%3B Fungi - 431%3B Plants - 276%3B Viruses - 0%3B Other Eukaryotes - 154 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12169696, PMID:15295017, PMID:16618929, locus:2014864; locus_type=protein_coding
AT1G05043.1	chr1:004800688	0.0	W/4800688-4801256	AT1G05043.1 antisense_lncRNA AT1G05043 ID=AT1G05043.1; Parent=AT1G05043; Name=AT1G05043.1; description=Natural antisense transcript overlaps with AT1G14010; Note=Natural antisense transcript overlaps with AT1G14010; locus_type=antisense_long_noncoding_rna
AT1G14020.1	chr1:004802930	0.0	W/4802930-4803188,4803269-4803336,4803422-4803510,4803603-4803765,4803873-4804162,4804252-4804456,4804564-4804721,4804844-4805111	AT1G14020.1 CDS AT1G14020 ID=AT1G14020.1; Parent=AT1G14020; Name=AT1G14020.1; Note=O-fucosyltransferase family protein; conf_class=1; computational_description=O-fucosyltransferase family protein%3B CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378)%3B BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT2G03280.1)%3B Has 821 Blast hits to 817 proteins in 30 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 821%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12169696, PMID:15851028, PMID:16297073, PMID:18775970, locus:2014869; locus_type=protein_coding
AT1G14030.1	chr1:004805493	0.0	C/4805493-4805708,4805789-4806193,4806282-4806404,4806520-4806731,4806858-4806886,4806977-4807440	AT1G14030.1 CDS AT1G14030 ID=AT1G14030.1; Parent=AT1G14030; Name=AT1G14030.1; Note=Rubisco methyltransferase family protein; curator_summary=Encodes a lysine methyltransferase whose main soluble physiological substrates are chloroplastic fructose 1%2C6-bisphosphate aldolases%2C FBA1%2C FBA2%2C and FBA3. Lysines near the C-terminal end of the target proteins are trimethylated.; conf_class=1; symbol=LSMT-L; full_name=lysine methyltransferase (LSMT)-like; computational_description=Rubisco methyltransferase family protein%3B FUNCTIONS IN: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity%3B LOCATED IN: chloroplast%2C chloroplast stroma%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Rubisco methyltransferase (InterPro:IPR011192)%2C SET domain (InterPro:IPR001214)%2C Rubisco LSMT substrate-binding (InterPro:IPR015353)%3B BEST Arabidopsis thaliana protein match is: Rubisco methyltransferase family protein (TAIR:AT3G07670.1)%3B Has 1278 Blast hits to 1271 proteins in 187 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 262%3B Fungi - 348%3B Plants - 463%3B Viruses - 0%3B Other Eukaryotes - 205 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14576160, PMID:15047898, PMID:18650403, PMID:18820081, PMID:20736450, PMID:22547063, locus:2014764; locus_type=protein_coding
AT1G05047.1	chr1:004805676	0.0	W/4805676-4806123	AT1G05047.1 antisense_lncRNA AT1G05047 ID=AT1G05047.1; Parent=AT1G05047; Name=AT1G05047.1; description=Natural antisense transcript overlaps with AT1G14030; Note=Natural antisense transcript overlaps with AT1G14030; locus_type=antisense_long_noncoding_rna
AT1G14040.1	chr1:004810488	0.0	W/4810488-4811109,4811845-4812214,4812300-4812348,4812433-4812504,4812599-4812728,4812813-4812933,4813032-4813290,4813378-4813482,4813572-4813766,4813848-4814129,4814204-4814340,4814444-4814543	AT1G14040.1 CDS AT1G14040 ID=AT1G14040.1; Parent=AT1G14040; Name=AT1G14040.1; Note=EXS (ERD1/XPR1/SYG1) family protein; curator_summary=Encodes a PHO1 homologue that is upregulated in response to Zn deficiency and is involved in Pi homeostasis in response to Zn deficiency.; conf_class=1; Alias=PHO1%3BH3, PHO1 homolog 3; computational_description=EXS (ERD1/XPR1/SYG1) family protein%3B LOCATED IN: integral to membrane%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: SPX%2C N-terminal (InterPro:IPR004331)%2C EXS%2C C-terminal (InterPro:IPR004342)%3B BEST Arabidopsis thaliana protein match is: EXS (ERD1/XPR1/SYG1) family protein (TAIR:AT2G03240.1)%3B Has 1168 Blast hits to 1094 proteins in 207 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 260%3B Fungi - 396%3B Plants - 362%3B Viruses - 0%3B Other Eukaryotes - 150 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15047901, PMID:15122012, PMID:17172353, PMID:24420568, locus:2014779; locus_type=protein_coding
AT1TE15600	chr1:004814530	0.0	C/4814530-4814987	AT1TE15600 transposable_element AT1TE15600 ID=AT1TE15600; Name=AT1TE15600; Alias=ATREP3
AT1G14048.1	chr1:004815683	0.0	C/4815683-4815988	AT1G14048.1 CDS AT1G14048 ID=AT1G14048.1; Parent=AT1G14048; Name=AT1G14048.1; Note=GCK domain-containing protein; conf_class=10; computational_description=GCK domain-containing protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: GCK (InterPro:IPR012891)%3B BEST Arabidopsis thaliana protein match is: GCK domain-containing protein (TAIR:AT5G02210.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=locus:4515102528; locus_type=protein_coding
AT1G14060.1	chr1:004817354	0.0	C/4817354-4817893	AT1G14060.1 CDS AT1G14060 ID=AT1G14060.1; Parent=AT1G14060; Name=AT1G14060.1; Note=GCK domain-containing protein; conf_class=1; computational_description=GCK domain-containing protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: N-terminal protein myristoylation%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 16 plant structures%3B EXPRESSED DURING: 10 growth stages%3B CONTAINS InterPro DOMAIN/s: GCK (InterPro:IPR012891)%3B BEST Arabidopsis thaliana protein match is: GCK domain-containing protein (TAIR:AT5G02210.1)%3B Has 325 Blast hits to 285 proteins in 75 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 95%3B Fungi - 33%3B Plants - 117%3B Viruses - 2%3B Other Eukaryotes - 76 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12912986, locus:2014814; locus_type=protein_coding
AT1G14071.1	chr1:004820355	0.0	C/4820355-4820549	AT1G14071.1 miRNA_primary_transcript AT1G14071 ID=AT1G14071.1; Parent=AT1G14071; Alias=p_MI0005386; Name=ath-MIR830; symbol=MIR830A; curator_summary=Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UCUUCUCCAAAUAGUUUAGGUU; Note=microRNA ath-MIR830 precursor; full_name=microRNA830A; Dbxref=locus:4515102529, locus:4515102529; locus_type=mirna
ath-miR830-3p	chr1:004820406	0.0	C/4820406-4820426	ath-miR830-3p miRNA ath-miR830-3p ID=ath-miR830-3p; Alias=MIMAT0004248; Name=ath-miR830-3p; Derives_from=AT1G14071.1; Note=microRNA ath-miR830-3p; computational_description=mature miRNA accession:MIMAT0004248
ath-miR830-5p	chr1:004820473	0.0	C/4820473-4820494	ath-miR830-5p miRNA ath-miR830-5p ID=ath-miR830-5p; Alias=MIMAT0004247; Name=ath-miR830-5p; Derives_from=AT1G14071.1; Note=microRNA ath-miR830-5p; computational_description=mature miRNA accession:MIMAT0004247
AT1G14080.1	chr1:004822526	0.0	W/4822526-4822688,4822768-4824218	AT1G14080.1 CDS AT1G14080 ID=AT1G14080.1; Parent=AT1G14080; Name=AT1G14080.1; Note=fucosyltransferase 6; curator_summary=Encodes an alpha-(1%2C2)-fucosyltransferase.; conf_class=2; symbol=FUT6; Alias=ATFUT6; full_name=fucosyltransferase 6; computational_description=fucosyltransferase 6 (FUT6)%3B FUNCTIONS IN: transferase activity%2C transferring glycosyl groups%2C fucosyltransferase activity%3B INVOLVED IN: cell wall biogenesis%3B LOCATED IN: endomembrane system%2C membrane%3B EXPRESSED IN: stem%2C root%2C flower%3B CONTAINS InterPro DOMAIN/s: Xyloglucan fucosyltransferase (InterPro:IPR004938)%3B BEST Arabidopsis thaliana protein match is: fucosyltransferase 4 (TAIR:AT2G15390.2)%3B Has 336 Blast hits to 327 proteins in 17 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 332%3B Viruses - 0%3B Other Eukaryotes - 4 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11743104, PMID:15860015, PMID:20194500, PMID:20736450, PMID:24127514, PMID:24667545, locus:2014844; locus_type=protein_coding
AT1G14090.1	chr1:004824430	0.0	C/4824430-4827478	AT1G14090.1 pseudogenic_transcript AT1G14090 ID=AT1G14090.1; Parent=AT1G14090; Name=AT1G14090.1; Note=pseudogene; computational_description=pseudogene%2C pentatricopeptide (PPR) repeat-containing protein%2C contains Pfam profile PF01535: PPR repeat%3B blastp match of 33%25 identity and 1.5e-16 P-value to GP|20219038|gb|AAM15782.1|AC104428_3|AC104428 Putative indole-3-acetate beta-glucosyltransferase %7BOryza sativa (japonica cultivar-group)%7D; Dbxref=locus:2035796; locus_type=pseudogene
AT1G14090.2	chr1:004824448	0.0	C/4824448-4827523	AT1G14090.2 pseudogenic_transcript AT1G14090 ID=AT1G14090.2; Parent=AT1G14090; Name=AT1G14090.2; Note=pseudogene; computational_description=pseudogene%2C pentatricopeptide (PPR) repeat-containing protein%2C contains Pfam profile PF01535: PPR repeat%3B blastp match of 33%25 identity and 1.5e-16 P-value to GP|20219038|gb|AAM15782.1|AC104428_3|AC104428 Putative indole-3-acetate beta-glucosyltransferase %7BOryza sativa (japonica cultivar-group)%7D; Dbxref=locus:2035796; locus_type=pseudogene
AT1G14100.1	chr1:004827961	0.0	W/4827961-4828066,4828143-4829587	AT1G14100.1 CDS AT1G14100 ID=AT1G14100.1; Parent=AT1G14100; Name=AT1G14100.1; Note=fucosyltransferase 8; curator_summary=member of Glycosyltransferase Family- 37. FUT8 was previously associated to AT1G14110; conf_class=3; symbol=FUT8; full_name=fucosyltransferase 8; computational_description=fucosyltransferase 8 (FUT8)%3B FUNCTIONS IN: galactoside 2-alpha-L-fucosyltransferase activity%3B INVOLVED IN: cell wall biogenesis%3B LOCATED IN: endomembrane system%2C membrane%3B EXPRESSED IN: leaf whorl%2C sepal%2C flower%3B EXPRESSED DURING: petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Xyloglucan fucosyltransferase (InterPro:IPR004938)%3B BEST Arabidopsis thaliana protein match is: fucosyltransferase 7 (TAIR:AT1G14070.1)%3B Has 332 Blast hits to 323 proteins in 17 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 330%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11743104, PMID:20736450, locus:2035812; locus_type=protein_coding
AT1TE15650	chr1:004829796	0.0	W/4829796-4830189	AT1TE15650 transposable_element AT1TE15650 ID=AT1TE15650; Name=AT1TE15650; Alias=HELITRONY1A
AT1G14110.1	chr1:004830297	0.0	W/4830297-4830405,4830483-4831378,4831496-4831915	AT1G14110.1 CDS AT1G14110 ID=AT1G14110.1; Parent=AT1G14110; Name=AT1G14110.1; Note=fucosyltransferase 9; curator_summary=member of xyloglucan fucosyltransferase family; conf_class=8; symbol=FUT9; Alias=ATFUT9; full_name=fucosyltransferase 9; computational_description=fucosyltransferase 9 (FUT9)%3B FUNCTIONS IN: fucosyltransferase activity%3B INVOLVED IN: cell wall biogenesis%3B LOCATED IN: endomembrane system%2C membrane%3B EXPRESSED IN: stem%2C cauline leaf%3B CONTAINS InterPro DOMAIN/s: Xyloglucan fucosyltransferase (InterPro:IPR004938)%3B BEST Arabidopsis thaliana protein match is: fucosyltransferase 8 (TAIR:AT1G14100.1)%3B Has 330 Blast hits to 321 proteins in 17 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 328%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=*; Dbxref=PMID:11743104, PMID:18650403, locus:2035824; locus_type=protein_coding
AT1G05053.1	chr1:004832651	0.0	W/4832651-4832858	AT1G05053.1 lnc_RNA AT1G05053 ID=AT1G05053.1; Parent=AT1G05053; Name=AT1G05053.1; locus_type=long_noncoding_rna
AT1G14120.1	chr1:004833648	0.0	C/4833648-4833920,4834019-4834340,4834490-4834833	AT1G14120.1 CDS AT1G14120 ID=AT1G14120.1; Parent=AT1G14120; Name=AT1G14120.1; Note=2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; conf_class=2; computational_description=2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein%3B FUNCTIONS IN: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors%2C oxidoreductase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: hypocotyl%2C root%3B CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123)%3B BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G14130.1)%3B Has 6316 Blast hits to 6255 proteins in 769 species: Archae - 0%3B Bacteria - 698%3B Metazoa - 67%3B Fungi - 416%3B Plants - 4549%3B Viruses - 0%3B Other Eukaryotes - 586 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15695462, PMID:16489130, PMID:16673935, PMID:22487254, locus:2035848; locus_type=protein_coding
AT1G14120.2	chr1:004833648	0.0	C/4833648-4833920,4834019-4834340,4834490-4834833	AT1G14120.2 CDS AT1G14120 ID=AT1G14120.2; Parent=AT1G14120; Name=AT1G14120.2; Note=2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; Dbxref=PMID:15695462, PMID:16489130, PMID:16673935, PMID:22487254, locus:2035848; computational_description=2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein%3B FUNCTIONS IN: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors%2C oxidoreductase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: hypocotyl%2C root%3B CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123)%3B BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G14130.1)%3B Has 6316 Blast hits to 6255 proteins in 769 species: Archae - 0%3B Bacteria - 698%3B Metazoa - 67%3B Fungi - 416%3B Plants - 4549%3B Viruses - 0%3B Other Eukaryotes - 586 (source: NCBI BLink).; locus_type=protein_coding
AT1G14120.3	chr1:004833648	0.0	C/4833648-4833920,4834019-4834340,4834490-4834833	AT1G14120.3 CDS AT1G14120 ID=AT1G14120.3; Parent=AT1G14120; Name=AT1G14120.3; Note=2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; Dbxref=PMID:15695462, PMID:16489130, PMID:16673935, PMID:22487254, locus:2035848; computational_description=2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein%3B FUNCTIONS IN: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors%2C oxidoreductase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: hypocotyl%2C root%3B CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123)%3B BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G14130.1)%3B Has 6316 Blast hits to 6255 proteins in 769 species: Archae - 0%3B Bacteria - 698%3B Metazoa - 67%3B Fungi - 416%3B Plants - 4549%3B Viruses - 0%3B Other Eukaryotes - 586 (source: NCBI BLink).; locus_type=protein_coding
AT1TE15660	chr1:004835450	0.0	C/4835450-4835616	AT1TE15660 transposable_element AT1TE15660 ID=AT1TE15660; Name=AT1TE15660; Alias=ATCOPIA88
AT1G14130.1	chr1:004836041	0.0	C/4836041-4836620,4836694-4837040	AT1G14130.1 CDS AT1G14130 ID=AT1G14130.1; Parent=AT1G14130; Name=AT1G14130.1; Note=2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; conf_class=2; computational_description=2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein%3B FUNCTIONS IN: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors%2C oxidoreductase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: nucleus%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123)%3B BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G14120.1)%3B Has 6919 Blast hits to 6851 proteins in 822 species: Archae - 0%3B Bacteria - 798%3B Metazoa - 89%3B Fungi - 567%3B Plants - 4661%3B Viruses - 0%3B Other Eukaryotes - 804 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15824099, PMID:16489130, PMID:20736450, locus:2035859; locus_type=protein_coding
AT1G14140.1	chr1:004838131	0.0	C/4838131-4838661,4839216-4839602	AT1G14140.1 CDS AT1G14140 ID=AT1G14140.1; Parent=AT1G14140; Name=AT1G14140.1; Note=Mitochondrial substrate carrier family protein; conf_class=2; symbol=UCP3; full_name=Uncoupling Protein 3; computational_description=Mitochondrial substrate carrier family protein%3B FUNCTIONS IN: transporter activity%2C binding%3B INVOLVED IN: transport%2C mitochondrial transport%2C transmembrane transport%3B LOCATED IN: mitochondrial inner membrane%2C membrane%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993)%2C Mitochondrial substrate/solute carrier (InterPro:IPR018108)%2C Adenine nucleotide translocator 1 (InterPro:IPR002113)%3B BEST Arabidopsis thaliana protein match is: uncoupling protein 2 (TAIR:AT5G58970.1)%3B Has 28913 Blast hits to 14062 proteins in 461 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 12057%3B Fungi - 8822%3B Plants - 5230%3B Viruses - 3%3B Other Eukaryotes - 2797 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12527366, PMID:12517306, PMID:12586869, PMID:15003237, PMID:16473895, PMID:16460511, PMID:18296449, PMID:20736450, PMID:21301941, locus:2035769; locus_type=protein_coding
AT1G14150.1	chr1:004839885	0.0	W/4839885-4840358,4840534-4840632	AT1G14150.1 CDS AT1G14150 ID=AT1G14150.1; Parent=AT1G14150; Name=AT1G14150.1; Note=PsbQ-like 2; curator_summary=Encodes a subunit of the NAD(P)H dehydrogenase complex located in the chloroplast thylakoid lumen.; conf_class=2; symbol=PnsL2; Alias=PQL1, PsbQ-like 1, PQL2, PsbQ-like 2; full_name=Photosynthetic NDH subcomplex L 2; computational_description=PsbQ-like 2 (PQL2)%3B FUNCTIONS IN: electron transporter%2C transferring electrons within the cyclic electron transport pathway of photosynthesis activity%3B INVOLVED IN: photosynthetic electron transport chain%3B LOCATED IN: in 6 components%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbQ (InterPro:IPR008797)%3B BEST Arabidopsis thaliana protein match is: photosystem II subunit Q-2 (TAIR:AT4G05180.1)%3B Has 142 Blast hits to 142 proteins in 27 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 142%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11719511, PMID:11826309, PMID:14729914, PMID:15322131, PMID:16403842, PMID:17142483, PMID:18431481, PMID:18650403, PMID:20460499, PMID:20430763, PMID:20666928, PMID:21785130, locus:2035775; locus_type=protein_coding
AT1G14150.2	chr1:004839885	0.0	W/4839885-4840373	AT1G14150.2 CDS AT1G14150 ID=AT1G14150.2; Parent=AT1G14150; Name=AT1G14150.2; Note=PsbQ-like 2; curator_summary=Encodes a subunit of the NAD(P)H dehydrogenase complex located in the chloroplast thylakoid lumen.; conf_class=1; symbol=PnsL2; Alias=PQL1, PsbQ-like 1, PQL2, PsbQ-like 2; full_name=Photosynthetic NDH subcomplex L 2; computational_description=PsbQ-like 2 (PQL2)%3B FUNCTIONS IN: electron transporter%2C transferring electrons within the cyclic electron transport pathway of photosynthesis activity%3B INVOLVED IN: photosynthetic electron transport chain%3B LOCATED IN: in 6 components%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbQ (InterPro:IPR008797)%3B BEST Arabidopsis thaliana protein match is: photosystem II subunit Q-2 (TAIR:AT4G05180.1)%3B Has 142 Blast hits to 142 proteins in 27 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 142%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11719511, PMID:11826309, PMID:14729914, PMID:15322131, PMID:16403842, PMID:17142483, PMID:18431481, PMID:18650403, PMID:20460499, PMID:20430763, PMID:20666928, PMID:21785130, locus:2035775; locus_type=protein_coding
AT1G14160.1	chr1:004840798	0.0	C/4840798-4841013,4841168-4841291,4841371-4841660	AT1G14160.1 CDS AT1G14160 ID=AT1G14160.1; Parent=AT1G14160; Name=AT1G14160.1; Note=Uncharacterized protein family (UPF0497); conf_class=1; Alias=CASPL1A1, CASP-like protein 1A1; computational_description=Uncharacterised protein family (UPF0497)%3B CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497%2C trans-membrane plant (InterPro:IPR006702)%2C Uncharacterised protein family UPF0497%2C trans-membrane plant subgroup (InterPro:IPR006459)%3B BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT5G15290.1)%3B Has 565 Blast hits to 565 proteins in 21 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 565%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:24920445, locus:2035791; locus_type=protein_coding
AT1G05057.1	chr1:004842275	0.0	W/4842275-4842469	AT1G05057.1 snRNA AT1G05057 ID=AT1G05057.1; Parent=AT1G05057; Name=AT1G05057.1; Note=U2; symbol=U2-14; Dbxref=PMID:15575968; Alias=U2.14; locus_type=small_nuclear_rna
AT1G05063.1	chr1:004842276	0.0	W/4842276-4842472	AT1G05063.1 transcript_region AT1G05063 ID=AT1G05063.1; Parent=AT1G05063; computational_description=novel transcribed region%3B detected in root%2C carpel%2C root apical meristem%2C receptacle%2C leaf%2C dark-grown seedling%2C light-grown seedling%2C flower%2C pollen%2C shoot apical meristem; Name=AT1G05063.1; locus_type=novel_transcribed_region
AT1G14170.1	chr1:004843463	0.0	C/4843463-4843498,4843597-4843779,4843875-4844129,4844207-4844572,4844654-4845150,4845226-4845253	AT1G14170.1 CDS AT1G14170 ID=AT1G14170.1; Parent=AT1G14170; Name=AT1G14170.1; Note=RNA-binding KH domain-containing protein; conf_class=2; computational_description=RNA-binding KH domain-containing protein%3B FUNCTIONS IN: RNA binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087)%2C K Homology%2C type 1%2C subgroup (InterPro:IPR018111)%2C K Homology%2C type 1 (InterPro:IPR004088)%3B BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT5G15270.1)%3B Has 5723 Blast hits to 2502 proteins in 207 species: Archae - 0%3B Bacteria - 27%3B Metazoa - 3969%3B Fungi - 490%3B Plants - 1023%3B Viruses - 0%3B Other Eukaryotes - 214 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16113229, PMID:16359384, PMID:20736450, PMID:20733066, locus:2035807; locus_type=protein_coding
AT1G14170.2	chr1:004843463	0.0	C/4843463-4843498,4843597-4843779,4843875-4844129,4844207-4844572,4844654-4845126,4845226-4845253	AT1G14170.2 CDS AT1G14170 ID=AT1G14170.2; Parent=AT1G14170; Name=AT1G14170.2; Note=RNA-binding KH domain-containing protein; conf_class=2; computational_description=RNA-binding KH domain-containing protein%3B FUNCTIONS IN: RNA binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087)%2C K Homology%2C type 1%2C subgroup (InterPro:IPR018111)%2C K Homology%2C type 1 (InterPro:IPR004088)%3B BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT5G15270.1)%3B Has 5723 Blast hits to 2502 proteins in 207 species: Archae - 0%3B Bacteria - 27%3B Metazoa - 3969%3B Fungi - 490%3B Plants - 1023%3B Viruses - 0%3B Other Eukaryotes - 214 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16113229, PMID:16359384, PMID:20736450, PMID:20733066, locus:2035807; locus_type=protein_coding
AT1G14170.3	chr1:004843463	0.0	C/4843463-4843498,4843597-4843779,4843875-4844129,4844207-4844572,4844654-4845253	AT1G14170.3 CDS AT1G14170 ID=AT1G14170.3; Parent=AT1G14170; Name=AT1G14170.3; Note=RNA-binding KH domain-containing protein; conf_class=3; computational_description=RNA-binding KH domain-containing protein%3B FUNCTIONS IN: RNA binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087)%2C K Homology%2C type 1%2C subgroup (InterPro:IPR018111)%2C K Homology%2C type 1 (InterPro:IPR004088)%3B BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT5G15270.1)%3B Has 5723 Blast hits to 2502 proteins in 207 species: Archae - 0%3B Bacteria - 27%3B Metazoa - 3969%3B Fungi - 490%3B Plants - 1023%3B Viruses - 0%3B Other Eukaryotes - 214 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16113229, PMID:16359384, PMID:20736450, PMID:20733066, locus:2035807; locus_type=protein_coding
AT1TE15700	chr1:004846671	0.0	C/4846671-4846730	AT1TE15700 transposable_element AT1TE15700 ID=AT1TE15700; Name=AT1TE15700; Alias=ATCOPIA62
AT1G14180.1	chr1:004847828	0.0	W/4847828-4848092,4848189-4848970	AT1G14180.1 CDS AT1G14180 ID=AT1G14180.1; Parent=AT1G14180; Name=AT1G14180.1; Note=RING/U-box superfamily protein; conf_class=1; computational_description=RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B INVOLVED IN: biological_process unknown%3B EXPRESSED IN: 10 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G18260.1)%3B Has 165 Blast hits to 164 proteins in 18 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 1%3B Plants - 162%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:2035819; locus_type=protein_coding
AT1G14180.2	chr1:004847976	0.0	W/4847976-4848092,4848194-4848970	AT1G14180.2 CDS AT1G14180 ID=AT1G14180.2; Parent=AT1G14180; Name=AT1G14180.2; Note=RING/U-box superfamily protein; conf_class=2; computational_description=RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B INVOLVED IN: biological_process unknown%3B EXPRESSED IN: 10 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G18260.1)%3B Has 165 Blast hits to 164 proteins in 18 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 1%3B Plants - 162%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2035819; locus_type=protein_coding
AT1G14182.1	chr1:004849440	0.0	C/4849440-4849892	AT1G14182.1 pseudogenic_transcript AT1G14182 ID=AT1G14182.1; Parent=AT1G14182; Name=AT1G14182.1; curator_summary=Encodes a member of a family of small%2C secreted%2C cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).; symbol=SCRL28; Note=pseudogene; full_name=SCR-like 28; Dbxref=PMID:11437247, PMID:11437247, locus:1009023069; computational_description=pseudogene of SCR-like 1; locus_type=pseudogene
AT1G14185.1	chr1:004850284	0.0	W/4850284-4850338,4850429-4851885	AT1G14185.1 CDS AT1G14185 ID=AT1G14185.1; Parent=AT1G14185; Name=AT1G14185.1; Note=Glucose-methanol-choline (GMC) oxidoreductase family protein; conf_class=1; computational_description=Glucose-methanol-choline (GMC) oxidoreductase family protein%3B FUNCTIONS IN: aldehyde-lyase activity%2C oxidoreductase activity%2C acting on CH-OH group of donors%2C FAD binding%3B INVOLVED IN: alcohol metabolic process%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: Glucose-methanol-choline oxidoreductase%2C N-terminal (InterPro:IPR000172)%2C Glucose-methanol-choline oxidoreductase (InterPro:IPR012132)%2C Glucose-methanol-choline oxidoreductase%2C C-terminal (InterPro:IPR007867)%3B BEST Arabidopsis thaliana protein match is: Glucose-methanol-choline (GMC) oxidoreductase family protein (TAIR:AT1G14190.1)%3B Has 12030 Blast hits to 11184 proteins in 1126 species: Archae - 6%3B Bacteria - 4157%3B Metazoa - 958%3B Fungi - 1842%3B Plants - 310%3B Viruses - 9%3B Other Eukaryotes - 4748 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15047898, PMID:17061125, PMID:20736450, locus:505006121; locus_type=protein_coding
AT1G14190.2	chr1:004852650	0.0	W/4852650-4852704,4852794-4854307	AT1G14190.2 CDS AT1G14190 ID=AT1G14190.2; Parent=AT1G14190; Name=AT1G14190.2; Note=Glucose-methanol-choline (GMC) oxidoreductase family protein; computational_description=Glucose-methanol-choline (GMC) oxidoreductase family protein%3B FUNCTIONS IN: aldehyde-lyase activity%2C oxidoreductase activity%2C acting on CH-OH group of donors%2C FAD binding%3B INVOLVED IN: alcohol metabolic process%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Glucose-methanol-choline oxidoreductase%2C N-terminal (InterPro:IPR000172)%2C Glucose-methanol-choline oxidoreductase (InterPro:IPR012132)%2C Glucose-methanol-choline oxidoreductase%2C C-terminal (InterPro:IPR007867)%3B BEST Arabidopsis thaliana protein match is: Glucose-methanol-choline (GMC) oxidoreductase family protein (TAIR:AT1G14185.1)%3B Has 12034 Blast hits to 11141 proteins in 1120 species: Archae - 6%3B Bacteria - 4075%3B Metazoa - 1036%3B Fungi - 1877%3B Plants - 336%3B Viruses - 6%3B Other Eukaryotes - 4698 (source: NCBI BLink).; Dbxref=PMID:15539473, PMID:16911220, locus:2035830; locus_type=protein_coding
AT1G14190.1	chr1:004852802	0.0	W/4852802-4854307	AT1G14190.1 CDS AT1G14190 ID=AT1G14190.1; Parent=AT1G14190; Name=AT1G14190.1; Note=Glucose-methanol-choline (GMC) oxidoreductase family protein; conf_class=4; computational_description=Glucose-methanol-choline (GMC) oxidoreductase family protein%3B FUNCTIONS IN: aldehyde-lyase activity%2C oxidoreductase activity%2C acting on CH-OH group of donors%2C FAD binding%3B INVOLVED IN: alcohol metabolic process%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Glucose-methanol-choline oxidoreductase%2C N-terminal (InterPro:IPR000172)%2C Glucose-methanol-choline oxidoreductase (InterPro:IPR012132)%2C Glucose-methanol-choline oxidoreductase%2C C-terminal (InterPro:IPR007867)%3B BEST Arabidopsis thaliana protein match is: Glucose-methanol-choline (GMC) oxidoreductase family protein (TAIR:AT1G14185.1)%3B Has 12034 Blast hits to 11141 proteins in 1120 species: Archae - 6%3B Bacteria - 4075%3B Metazoa - 1036%3B Fungi - 1877%3B Plants - 336%3B Viruses - 6%3B Other Eukaryotes - 4698 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:15539473, PMID:16911220, locus:2035830; locus_type=protein_coding
AT1G14200.1	chr1:004854532	0.0	C/4854532-4855071	AT1G14200.1 CDS AT1G14200 ID=AT1G14200.1; Parent=AT1G14200; Name=AT1G14200.1; Note=RING/U-box superfamily protein; conf_class=1; computational_description=RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G26800.1)%3B Has 10250 Blast hits to 10222 proteins in 289 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 2721%3B Fungi - 824%3B Plants - 5163%3B Viruses - 73%3B Other Eukaryotes - 1463 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11983057, PMID:18252252, PMID:18424626, PMID:18650403, PMID:18775970, locus:2035843; locus_type=protein_coding
AT1G14205.1	chr1:004855570	0.0	W/4855570-4855681,4855777-4855868,4855965-4856117,4856610-4856762	AT1G14205.1 CDS AT1G14205 ID=AT1G14205.1; Parent=AT1G14205; Name=AT1G14205.1; Note=Ribosomal L18p/L5e family protein; conf_class=3; computational_description=Ribosomal L18p/L5e family protein%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%3B LOCATED IN: ribosome%2C intracellular%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L18/L5 (InterPro:IPR005484)%3B BEST Arabidopsis thaliana protein match is: Ribosomal L18p/L5e family protein (TAIR:AT1G48350.1)%3B Has 2486 Blast hits to 2465 proteins in 979 species: Archae - 0%3B Bacteria - 1979%3B Metazoa - 0%3B Fungi - 0%3B Plants - 103%3B Viruses - 0%3B Other Eukaryotes - 404 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:504956217; locus_type=protein_coding
AT1G14210.1	chr1:004856902	0.0	C/4856902-4857182,4857261-4857465,4857600-4857755,4857840-4857941	AT1G14210.1 CDS AT1G14210 ID=AT1G14210.1; Parent=AT1G14210; Name=AT1G14210.1; Note=Ribonuclease T2 family protein; conf_class=2; computational_description=Ribonuclease T2 family protein%3B FUNCTIONS IN: ribonuclease T2 activity%2C endoribonuclease activity%2C RNA binding%3B INVOLVED IN: response to salt stress%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribonuclease T2 (InterPro:IPR001568)%2C Ribonuclease T2%2C active site (InterPro:IPR018188)%3B BEST Arabidopsis thaliana protein match is: Ribonuclease T2 family protein (TAIR:AT1G14220.1)%3B Has 2321 Blast hits to 2320 proteins in 411 species: Archae - 0%3B Bacteria - 245%3B Metazoa - 291%3B Fungi - 229%3B Plants - 1455%3B Viruses - 6%3B Other Eukaryotes - 95 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12481097, PMID:15047898, PMID:16081527, PMID:16813576, locus:2035865; locus_type=protein_coding
AT1G14220.1	chr1:004858642	0.0	C/4858642-4858865,4858955-4859153,4859233-4859388,4859494-4859601	AT1G14220.1 CDS AT1G14220 ID=AT1G14220.1; Parent=AT1G14220; Name=AT1G14220.1; Note=Ribonuclease T2 family protein; conf_class=1; computational_description=Ribonuclease T2 family protein%3B FUNCTIONS IN: ribonuclease T2 activity%2C endoribonuclease activity%2C RNA binding%3B INVOLVED IN: N-terminal protein myristoylation%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: sperm cell%2C root%2C egg cell%3B CONTAINS InterPro DOMAIN/s: Ribonuclease T2 (InterPro:IPR001568)%2C Ribonuclease T2%2C active site (InterPro:IPR018188)%3B BEST Arabidopsis thaliana protein match is: ribonuclease 3 (TAIR:AT1G26820.1)%3B Has 2564 Blast hits to 2563 proteins in 502 species: Archae - 0%3B Bacteria - 420%3B Metazoa - 283%3B Fungi - 235%3B Plants - 1517%3B Viruses - 7%3B Other Eukaryotes - 102 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12912986, PMID:15539469, PMID:16581873, PMID:17061125, PMID:20226671, PMID:20736450, locus:2035871; locus_type=protein_coding
AT1G14230.1	chr1:004861497	0.0	W/4861497-4862103,4862343-4862455,4862588-4862695,4862924-4862966,4863070-4863261,4863347-4863444,4863545-4863741,4863838-4863991	AT1G14230.1 CDS AT1G14230 ID=AT1G14230.1; Parent=AT1G14230; Name=AT1G14230.1; Note=GDA1/CD39 nucleoside phosphatase family protein; conf_class=2; computational_description=GDA1/CD39 nucleoside phosphatase family protein%3B FUNCTIONS IN: hydrolase activity%3B CONTAINS InterPro DOMAIN/s: Nucleoside phosphatase GDA1/CD39 (InterPro:IPR000407)%3B BEST Arabidopsis thaliana protein match is: GDA1/CD39 nucleoside phosphatase family protein (TAIR:AT1G14250.1)%3B Has 1467 Blast hits to 1458 proteins in 234 species: Archae - 0%3B Bacteria - 41%3B Metazoa - 609%3B Fungi - 317%3B Plants - 334%3B Viruses - 0%3B Other Eukaryotes - 166 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:18650403, locus:2035781; locus_type=protein_coding
AT1G14240.1	chr1:004865159	0.0	W/4865159-4865732,4865810-4865922,4866424-4866531,4866707-4866749,4866856-4867044,4867144-4867241,4867347-4867543,4867648-4867777	AT1G14240.1 CDS AT1G14240 ID=AT1G14240.1; Parent=AT1G14240; Name=AT1G14240.1; Note=GDA1/CD39 nucleoside phosphatase family protein; conf_class=1; Alias=APY3, apyrase3; computational_description=GDA1/CD39 nucleoside phosphatase family protein%3B FUNCTIONS IN: hydrolase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Nucleoside phosphatase GDA1/CD39 (InterPro:IPR000407)%3B BEST Arabidopsis thaliana protein match is: GDA1/CD39 nucleoside phosphatase family protein (TAIR:AT1G14250.1)%3B Has 1471 Blast hits to 1463 proteins in 237 species: Archae - 0%3B Bacteria - 39%3B Metazoa - 609%3B Fungi - 317%3B Plants - 332%3B Viruses - 0%3B Other Eukaryotes - 174 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16299181, PMID:20226671, PMID:20736450, PMID:22589469, PMID:25723364, locus:2035786; locus_type=protein_coding
AT1G14240.2	chr1:004865159	0.0	W/4865159-4865732,4865810-4865922,4866424-4866531,4866707-4866749,4866856-4867044,4867144-4867241,4867347-4867543,4867648-4867777	AT1G14240.2 CDS AT1G14240 ID=AT1G14240.2; Parent=AT1G14240; Name=AT1G14240.2; Note=GDA1/CD39 nucleoside phosphatase family protein; conf_class=2; Alias=APY3, apyrase3; computational_description=GDA1/CD39 nucleoside phosphatase family protein%3B FUNCTIONS IN: hydrolase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Nucleoside phosphatase GDA1/CD39 (InterPro:IPR000407)%3B BEST Arabidopsis thaliana protein match is: GDA1/CD39 nucleoside phosphatase family protein (TAIR:AT1G14250.1)%3B Has 1471 Blast hits to 1463 proteins in 237 species: Archae - 0%3B Bacteria - 39%3B Metazoa - 609%3B Fungi - 317%3B Plants - 332%3B Viruses - 0%3B Other Eukaryotes - 174 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16299181, PMID:20226671, PMID:20736450, PMID:22589469, PMID:25723364, locus:2035786; locus_type=protein_coding
AT1G14240.3	chr1:004865159	0.0	W/4865159-4865732,4865822-4865922,4866424-4866531,4866707-4866749,4866856-4867044,4867144-4867241,4867347-4867543,4867648-4867777	AT1G14240.3 CDS AT1G14240 ID=AT1G14240.3; Parent=AT1G14240; Name=AT1G14240.3; Note=GDA1/CD39 nucleoside phosphatase family protein; conf_class=3; Alias=APY3, apyrase3; computational_description=GDA1/CD39 nucleoside phosphatase family protein%3B FUNCTIONS IN: hydrolase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Nucleoside phosphatase GDA1/CD39 (InterPro:IPR000407)%3B BEST Arabidopsis thaliana protein match is: GDA1/CD39 nucleoside phosphatase family protein (TAIR:AT1G14250.1)%3B Has 1471 Blast hits to 1463 proteins in 237 species: Archae - 0%3B Bacteria - 39%3B Metazoa - 609%3B Fungi - 317%3B Plants - 332%3B Viruses - 0%3B Other Eukaryotes - 174 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16299181, PMID:20226671, PMID:20736450, PMID:22589469, PMID:25723364, locus:2035786; locus_type=protein_coding
AT1G14240.4	chr1:004865159	0.0	W/4865159-4865732,4865810-4865922,4866424-4866531,4866707-4866749,4866856-4867044,4867144-4867241,4867347-4867543,4867648-4867777	AT1G14240.4 CDS AT1G14240 ID=AT1G14240.4; Parent=AT1G14240; Name=AT1G14240.4; Note=GDA1/CD39 nucleoside phosphatase family protein; conf_class=3; Alias=APY3, apyrase3; computational_description=GDA1/CD39 nucleoside phosphatase family protein%3B FUNCTIONS IN: hydrolase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Nucleoside phosphatase GDA1/CD39 (InterPro:IPR000407)%3B BEST Arabidopsis thaliana protein match is: GDA1/CD39 nucleoside phosphatase family protein (TAIR:AT1G14250.1)%3B Has 1471 Blast hits to 1463 proteins in 237 species: Archae - 0%3B Bacteria - 39%3B Metazoa - 609%3B Fungi - 317%3B Plants - 332%3B Viruses - 0%3B Other Eukaryotes - 174 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16299181, PMID:20226671, PMID:20736450, PMID:22589469, PMID:25723364, locus:2035786; locus_type=protein_coding
AT1G14250.1	chr1:004868675	0.0	W/4868675-4869251,4869478-4869590,4869815-4869922,4870120-4870162,4870307-4870504,4870587-4870684,4870783-4870979,4871071-4871203	AT1G14250.1 CDS AT1G14250 ID=AT1G14250.1; Parent=AT1G14250; Name=AT1G14250.1; Note=GDA1/CD39 nucleoside phosphatase family protein; conf_class=1; computational_description=GDA1/CD39 nucleoside phosphatase family protein%3B FUNCTIONS IN: hydrolase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: vacuole%3B EXPRESSED IN: male gametophyte%2C cultured cell%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%3B CONTAINS InterPro DOMAIN/s: Nucleoside phosphatase GDA1/CD39 (InterPro:IPR000407)%3B BEST Arabidopsis thaliana protein match is: GDA1/CD39 nucleoside phosphatase family protein (TAIR:AT1G14240.4)%3B Has 1463 Blast hits to 1456 proteins in 234 species: Archae - 0%3B Bacteria - 39%3B Metazoa - 610%3B Fungi - 315%3B Plants - 332%3B Viruses - 0%3B Other Eukaryotes - 167 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16792696, PMID:17473866, PMID:18650403, PMID:18775970, PMID:20736450, locus:2035802; locus_type=protein_coding
AT1TE15780	chr1:004872080	0.0	C/4872080-4872219	AT1TE15780 transposable_element AT1TE15780 ID=AT1TE15780; Name=AT1TE15780; Alias=HELITRONY1D
AT1TE15785	chr1:004872220	0.0	C/4872220-4872684	AT1TE15785 transposable_element AT1TE15785 ID=AT1TE15785; Name=AT1TE15785; Alias=ATREP4
AT1G14260.1	chr1:004873200	0.0	W/4873200-4873439,4873541-4873612,4873694-4873761,4873854-4874004,4874077-4874163,4874251-4874430	AT1G14260.1 CDS AT1G14260 ID=AT1G14260.1; Parent=AT1G14260; Name=AT1G14260.1; Note=RING/FYVE/PHD zinc finger superfamily protein; conf_class=2; computational_description=RING/FYVE/PHD zinc finger superfamily protein%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3675 (InterPro:IPR022143)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%2C Zinc finger%2C RING-CH-type (InterPro:IPR011016)%3B BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT2G02960.3)%3B Has 1793 Blast hits to 1789 proteins in 214 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 745%3B Fungi - 130%3B Plants - 638%3B Viruses - 54%3B Other Eukaryotes - 226 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15644464, PMID:16339806, PMID:17056621, PMID:18775970, locus:2012477; locus_type=protein_coding
AT1G14260.2	chr1:004873200	0.0	W/4873200-4873439,4873541-4873612,4873694-4873761,4873854-4874004,4874077-4874163,4874251-4874430	AT1G14260.2 CDS AT1G14260 ID=AT1G14260.2; Parent=AT1G14260; Name=AT1G14260.2; Note=RING/FYVE/PHD zinc finger superfamily protein; conf_class=2; computational_description=RING/FYVE/PHD zinc finger superfamily protein%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3675 (InterPro:IPR022143)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%2C Zinc finger%2C RING-CH-type (InterPro:IPR011016)%3B BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT2G02960.3)%3B Has 1793 Blast hits to 1789 proteins in 214 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 745%3B Fungi - 130%3B Plants - 638%3B Viruses - 54%3B Other Eukaryotes - 226 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15644464, PMID:16339806, PMID:17056621, PMID:18775970, locus:2012477; locus_type=protein_coding
AT1G14260.3	chr1:004873200	0.0	W/4873200-4873439,4873541-4873612,4873694-4873761,4873854-4874004,4874077-4874163,4874251-4874430	AT1G14260.3 CDS AT1G14260 ID=AT1G14260.3; Parent=AT1G14260; Name=AT1G14260.3; Note=RING/FYVE/PHD zinc finger superfamily protein; Dbxref=PMID:15644464, PMID:16339806, PMID:17056621, PMID:18775970, locus:2012477; computational_description=RING/FYVE/PHD zinc finger superfamily protein%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3675 (InterPro:IPR022143)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%2C Zinc finger%2C RING-CH-type (InterPro:IPR011016)%3B BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT2G02960.3)%3B Has 1793 Blast hits to 1789 proteins in 214 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 745%3B Fungi - 130%3B Plants - 638%3B Viruses - 54%3B Other Eukaryotes - 226 (source: NCBI BLink).; locus_type=protein_coding
AT1G14270.1	chr1:004875099	0.0	C/4875099-4875140,4875231-4875337,4875424-4875515,4875591-4875683,4875758-4875807,4875895-4876028,4876112-4876194,4876361-4876468,4876670-4876767,4876941-4877195	AT1G14270.1 CDS AT1G14270 ID=AT1G14270.1; Parent=AT1G14270; Name=AT1G14270.1; Note=CAAX amino terminal protease family protein; conf_class=2; computational_description=CAAX amino terminal protease family protein%3B INVOLVED IN: proteolysis%3B LOCATED IN: membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Abortive infection protein (InterPro:IPR003675)%3B BEST Arabidopsis thaliana protein match is: CAAX amino terminal protease family protein (TAIR:AT5G60750.1)%3B Has 3763 Blast hits to 3760 proteins in 994 species: Archae - 88%3B Bacteria - 3260%3B Metazoa - 0%3B Fungi - 0%3B Plants - 134%3B Viruses - 0%3B Other Eukaryotes - 281 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:17474978, PMID:18650403, PMID:18775970, locus:2012487; locus_type=protein_coding
AT1G14270.2	chr1:004875099	0.0	C/4875099-4875140,4875231-4875337,4875424-4875515,4875591-4875683,4875758-4875807,4875895-4876028,4876112-4876194,4876361-4876503	AT1G14270.2 CDS AT1G14270 ID=AT1G14270.2; Parent=AT1G14270; Name=AT1G14270.2; Note=CAAX amino terminal protease family protein; conf_class=2; computational_description=CAAX amino terminal protease family protein%3B INVOLVED IN: proteolysis%3B LOCATED IN: membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Abortive infection protein (InterPro:IPR003675)%3B BEST Arabidopsis thaliana protein match is: CAAX amino terminal protease family protein (TAIR:AT5G60750.1)%3B Has 3763 Blast hits to 3760 proteins in 994 species: Archae - 88%3B Bacteria - 3260%3B Metazoa - 0%3B Fungi - 0%3B Plants - 134%3B Viruses - 0%3B Other Eukaryotes - 281 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:17474978, PMID:18650403, PMID:18775970, locus:2012487; locus_type=protein_coding
AT1G14270.3	chr1:004875099	0.0	C/4875099-4875140,4875231-4875337,4875424-4875515,4875591-4875683,4875758-4875807,4875895-4876028,4876112-4876194,4876361-4876443	AT1G14270.3 CDS AT1G14270 ID=AT1G14270.3; Parent=AT1G14270; Name=AT1G14270.3; Note=CAAX amino terminal protease family protein; conf_class=2; computational_description=CAAX amino terminal protease family protein%3B INVOLVED IN: proteolysis%3B LOCATED IN: membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Abortive infection protein (InterPro:IPR003675)%3B BEST Arabidopsis thaliana protein match is: CAAX amino terminal protease family protein (TAIR:AT5G60750.1)%3B Has 3763 Blast hits to 3760 proteins in 994 species: Archae - 88%3B Bacteria - 3260%3B Metazoa - 0%3B Fungi - 0%3B Plants - 134%3B Viruses - 0%3B Other Eukaryotes - 281 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:17474978, PMID:18650403, PMID:18775970, locus:2012487; locus_type=protein_coding
AT1G14270.4	chr1:004875099	0.0	C/4875099-4875140,4875231-4875337,4875424-4875515,4875591-4875683,4875758-4875807,4875895-4876028,4876112-4876194,4876361-4876443	AT1G14270.4 CDS AT1G14270 ID=AT1G14270.4; Parent=AT1G14270; Name=AT1G14270.4; Note=CAAX amino terminal protease family protein; conf_class=2; computational_description=CAAX amino terminal protease family protein%3B INVOLVED IN: proteolysis%3B LOCATED IN: membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Abortive infection protein (InterPro:IPR003675)%3B BEST Arabidopsis thaliana protein match is: CAAX amino terminal protease family protein (TAIR:AT5G60750.1)%3B Has 3763 Blast hits to 3760 proteins in 994 species: Archae - 88%3B Bacteria - 3260%3B Metazoa - 0%3B Fungi - 0%3B Plants - 134%3B Viruses - 0%3B Other Eukaryotes - 281 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:17474978, PMID:18650403, PMID:18775970, locus:2012487; locus_type=protein_coding
AT1G14280.1	chr1:004877657	0.0	W/4877657-4878985	AT1G14280.1 CDS AT1G14280 ID=AT1G14280.1; Parent=AT1G14280; Name=AT1G14280.1; Note=phytochrome kinase substrate 2; curator_summary=Encodes phytochrome kinase substrate 2. PKS proteins are critical for hypocotyl phototropism. Forms a complex with Phot1%2C Phot2 and NPH3.; conf_class=1; symbol=PKS2; full_name=phytochrome kinase substrate 2; computational_description=phytochrome kinase substrate 2 (PKS2)%3B BEST Arabidopsis thaliana protein match is: phytochrome kinase substrate 1 (TAIR:AT2G02950.1)%3B Has 337 Blast hits to 325 proteins in 29 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 13%3B Fungi - 6%3B Plants - 286%3B Viruses - 0%3B Other Eukaryotes - 30 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12177480, PMID:14576160, PMID:14615593, PMID:15282545, PMID:16777956, PMID:17474978, PMID:17905899, PMID:18650403, PMID:20071603, PMID:24286493, locus:2012502; locus_type=protein_coding
AT1G14290.1	chr1:004880307	0.0	C/4880307-4880861,4881560-4881784	AT1G14290.1 CDS AT1G14290 ID=AT1G14290.1; Parent=AT1G14290; Name=AT1G14290.1; Note=sphingoid base hydroxylase 2; curator_summary=Encodes one of the two redundant sphingoid base hydroxylases (SBH). Involved in sphingolipid trihydroxy long-chain base (4-hydroxysphinganine) biosynthesis. Double mutants of SBHs were dwarfed and not able to progress from vegetative to reproductive growth.; conf_class=4; symbol=SBH2; Alias=AtSBH2; full_name=sphingoid base hydroxylase 2; computational_description=sphingoid base hydroxylase 2 (SBH2)%3B CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694)%3B BEST Arabidopsis thaliana protein match is: sphingoid base hydroxylase 1 (TAIR:AT1G69640.1)%3B Has 2314 Blast hits to 2272 proteins in 379 species: Archae - 0%3B Bacteria - 367%3B Metazoa - 413%3B Fungi - 680%3B Plants - 393%3B Viruses - 3%3B Other Eukaryotes - 458 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:11297741, PMID:14756312, PMID:15037448, PMID:17474978, PMID:17635905, PMID:17630276, PMID:18650403, PMID:18643979, PMID:18612100, PMID:18775970, PMID:20145257, PMID:23505340, PMID:24687220, locus:2012512; locus_type=protein_coding
AT1G14290.2	chr1:004880307	0.0	C/4880307-4880861,4880969-4880971	AT1G14290.2 CDS AT1G14290 ID=AT1G14290.2; Parent=AT1G14290; Name=AT1G14290.2; Note=sphingoid base hydroxylase 2; symbol=SBH2; Alias=AtSBH2; full_name=sphingoid base hydroxylase 2; curator_summary=Encodes one of the two redundant sphingoid base hydroxylases (SBH). Involved in sphingolipid trihydroxy long-chain base (4-hydroxysphinganine) biosynthesis. Double mutants of SBHs were dwarfed and not able to progress from vegetative to reproductive growth.; computational_description=sphingoid base hydroxylase 2 (SBH2)%3B CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694)%3B BEST Arabidopsis thaliana protein match is: sphingoid base hydroxylase 1 (TAIR:AT1G69640.1)%3B Has 2314 Blast hits to 2272 proteins in 379 species: Archae - 0%3B Bacteria - 367%3B Metazoa - 413%3B Fungi - 680%3B Plants - 393%3B Viruses - 3%3B Other Eukaryotes - 458 (source: NCBI BLink).; Dbxref=PMID:11297741, PMID:14756312, PMID:15037448, PMID:17474978, PMID:17635905, PMID:17630276, PMID:18650403, PMID:18643979, PMID:18612100, PMID:18775970, PMID:20145257, PMID:23505340, PMID:24687220, locus:2012512; locus_type=protein_coding
AT1G14300.1	chr1:004882654	0.0	C/4882654-4882713,4882817-4882930,4883045-4883176,4883277-4883390,4883492-4883637,4883930-4884008,4884112-4884309,4884399-4884521,4884633-4884686	AT1G14300.1 CDS AT1G14300 ID=AT1G14300.1; Parent=AT1G14300; Name=AT1G14300.1; Note=ARM repeat superfamily protein; conf_class=2; computational_description=ARM repeat superfamily protein%3B FUNCTIONS IN: binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0507 (InterPro:IPR007205)%2C Armadillo-like helical (InterPro:IPR011989)%2C Uncharacterised protein family UPF0507%2C C-terminal (InterPro:IPR007206)%2C Armadillo-type fold (InterPro:IPR016024)%3B Has 331 Blast hits to 331 proteins in 167 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 95%3B Fungi - 149%3B Plants - 51%3B Viruses - 0%3B Other Eukaryotes - 36 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16623895, PMID:17474978, locus:2012527; locus_type=protein_coding
AT1G14300.2	chr1:004882654	0.0	C/4882654-4882713,4882817-4883176,4883277-4883390,4883492-4883637,4883930-4884008,4884112-4884309,4884399-4884521,4884633-4884686	AT1G14300.2 CDS AT1G14300 ID=AT1G14300.2; Parent=AT1G14300; Name=AT1G14300.2; Note=ARM repeat superfamily protein; conf_class=4; computational_description=ARM repeat superfamily protein%3B FUNCTIONS IN: binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0507 (InterPro:IPR007205)%2C Armadillo-like helical (InterPro:IPR011989)%2C Uncharacterised protein family UPF0507%2C C-terminal (InterPro:IPR007206)%2C Armadillo-type fold (InterPro:IPR016024)%3B Has 331 Blast hits to 331 proteins in 167 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 95%3B Fungi - 149%3B Plants - 51%3B Viruses - 0%3B Other Eukaryotes - 36 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:16623895, PMID:17474978, locus:2012527; locus_type=protein_coding
AT1G14310.1	chr1:004885049	0.0	W/4885049-4885151,4885329-4885439,4885523-4885605,4885705-4885788,4885879-4885954,4886041-4886113,4886211-4886284,4886408-4886501,4886606-4886672	AT1G14310.1 CDS AT1G14310 ID=AT1G14310.1; Parent=AT1G14310; Name=AT1G14310.1; Note=Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; conf_class=1; computational_description=Haloacid dehalogenase-like hydrolase (HAD) superfamily protein%3B FUNCTIONS IN: hydrolase activity%2C catalytic activity%2C phosphoglycolate phosphatase activity%3B INVOLVED IN: metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834)%2C Haloacid dehydrogenase/epoxide hydrolase (InterPro:IPR005833)%2C HAD-superfamily hydrolase%2C subfamily IA%2C REG-2-like (InterPro:IPR011949)%2C HAD-superfamily hydrolase%2C subfamily IA%2C variant 1 (InterPro:IPR006439)%3B BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT2G41250.1)%3B Has 5555 Blast hits to 5555 proteins in 1508 species: Archae - 313%3B Bacteria - 4016%3B Metazoa - 183%3B Fungi - 73%3B Plants - 110%3B Viruses - 0%3B Other Eukaryotes - 860 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:2012617; locus_type=protein_coding
AT1G14315.1	chr1:004886861	0.0	C/4886861-4887439	AT1G14315.1 CDS AT1G14315 ID=AT1G14315.1; Parent=AT1G14315; Name=AT1G14315.1; Note=F-box and associated interaction domains-containing protein; conf_class=1; computational_description=F-box and associated interaction domains-containing protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch%2C beta-propeller (InterPro:IPR011043)%2C F-box associated domain%2C type 1 (InterPro:IPR006527)%2C F-box associated interaction domain (InterPro:IPR017451)%3B BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT1G09650.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:4515102531; locus_type=protein_coding
AT1G14315.2	chr1:004886861	0.0	C/4886861-4887377,4887539-4887933	AT1G14315.2 CDS AT1G14315 ID=AT1G14315.2; Parent=AT1G14315; Name=AT1G14315.2; Note=F-box and associated interaction domains-containing protein; conf_class=8; computational_description=F-box and associated interaction domains-containing protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch%2C beta-propeller (InterPro:IPR011043)%2C F-box associated domain%2C type 1 (InterPro:IPR006527)%2C F-box associated interaction domain (InterPro:IPR017451)%3B BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT1G09650.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=*; Dbxref=locus:4515102531; locus_type=protein_coding
AT1G14320.1	chr1:004888270	0.0	W/4888270-4888279,4888549-4889050,4889146-4889227,4889340-4889408	AT1G14320.1 CDS AT1G14320 ID=AT1G14320.1; Parent=AT1G14320; Name=AT1G14320.1; Note=Ribosomal protein L16p/L10e family protein; curator_summary=Encodes a ribosomal protein L10 and may be involved in translation regulation. Semi-dominant mutations in SAC552 can suppress defects in acaulis5%2C which encodes a thermospermine synthase%2C by enhancing translation of acl5 and itself.; conf_class=2; symbol=SAC52; Alias=RPL10A, ribosomal protein L10 A, RPL10, ribosomal protein L10; full_name=SUPPRESSOR OF ACAULIS 52; computational_description=SUPPRESSOR OF ACAULIS 52 (SAC52)%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: cellular response to UV-B%2C translation%3B LOCATED IN: in 7 components%3B EXPRESSED IN: 27 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L10e (InterPro:IPR001197)%2C Ribosomal protein L10e/L16 (InterPro:IPR016180)%2C Ribosomal protein L10e%2C conserved site (InterPro:IPR018255)%3B BEST Arabidopsis thaliana protein match is: Ribosomal protein L16p/L10e family protein (TAIR:AT1G26910.1)%3B Has 1679 Blast hits to 1677 proteins in 606 species: Archae - 325%3B Bacteria - 13%3B Metazoa - 562%3B Fungi - 162%3B Plants - 159%3B Viruses - 0%3B Other Eukaryotes - 458 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11598216, PMID:12609051, PMID:14551330, PMID:14730065, PMID:15144383, PMID:15215502, PMID:15821981, PMID:15965024, PMID:16621846, PMID:17934214, PMID:18160300, PMID:18650403, PMID:18633119, PMID:18694459, PMID:18775970, PMID:18789471, PMID:20516338, PMID:20855946, PMID:19492062, PMID:19934175, PMID:22195043, PMID:22345435, PMID:23886624, PMID:25707794, locus:2012612; locus_type=protein_coding
AT1G14320.2	chr1:004888650	0.0	W/4888650-4888766,4888938-4889050,4889146-4889227,4889340-4889408	AT1G14320.2 CDS AT1G14320 ID=AT1G14320.2; Parent=AT1G14320; Name=AT1G14320.2; Note=Ribosomal protein L16p/L10e family protein; curator_summary=Encodes a ribosomal protein L10 and may be involved in translation regulation. Semi-dominant mutations in SAC552 can suppress defects in acaulis5%2C which encodes a thermospermine synthase%2C by enhancing translation of acl5 and itself.; conf_class=2; symbol=SAC52; Alias=RPL10A, ribosomal protein L10 A, RPL10, ribosomal protein L10; full_name=SUPPRESSOR OF ACAULIS 52; computational_description=SUPPRESSOR OF ACAULIS 52 (SAC52)%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: cellular response to UV-B%2C translation%3B LOCATED IN: in 7 components%3B EXPRESSED IN: 27 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L10e (InterPro:IPR001197)%2C Ribosomal protein L10e/L16 (InterPro:IPR016180)%2C Ribosomal protein L10e%2C conserved site (InterPro:IPR018255)%3B BEST Arabidopsis thaliana protein match is: Ribosomal protein L16p/L10e family protein (TAIR:AT1G26910.1)%3B Has 1679 Blast hits to 1677 proteins in 606 species: Archae - 325%3B Bacteria - 13%3B Metazoa - 562%3B Fungi - 162%3B Plants - 159%3B Viruses - 0%3B Other Eukaryotes - 458 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11598216, PMID:12609051, PMID:14551330, PMID:14730065, PMID:15144383, PMID:15215502, PMID:15821981, PMID:15965024, PMID:16621846, PMID:17934214, PMID:18160300, PMID:18650403, PMID:18633119, PMID:18694459, PMID:18775970, PMID:18789471, PMID:20516338, PMID:20855946, PMID:19492062, PMID:19934175, PMID:22195043, PMID:22345435, PMID:23886624, PMID:25707794, locus:2012612; locus_type=protein_coding
AT1G14330.1	chr1:004890375	0.0	C/4890375-4891700	AT1G14330.1 CDS AT1G14330 ID=AT1G14330.1; Parent=AT1G14330; Name=AT1G14330.1; Note=Galactose oxidase/kelch repeat superfamily protein; conf_class=1; computational_description=Galactose oxidase/kelch repeat superfamily protein%3B CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch%2C beta-propeller (InterPro:IPR011043)%2C Kelch repeat type 1 (InterPro:IPR006652)%2C Kelch related (InterPro:IPR013089)%2C Kelch-type beta propeller (InterPro:IPR015915)%3B BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT2G02870.3)%3B Has 8067 Blast hits to 4582 proteins in 289 species: Archae - 6%3B Bacteria - 418%3B Metazoa - 6039%3B Fungi - 16%3B Plants - 1102%3B Viruses - 148%3B Other Eukaryotes - 338 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:18650403, PMID:21119043, locus:2012547; locus_type=protein_coding
AT1TE15840	chr1:004892277	0.0	C/4892277-4893055	AT1TE15840 transposable_element AT1TE15840 ID=AT1TE15840; Name=AT1TE15840; Alias=ATREP11
AT1G14340.1	chr1:004897709	0.0	W/4897709-4897827,4897919-4897994,4898080-4898193,4898351-4898776	AT1G14340.1 CDS AT1G14340 ID=AT1G14340.1; Parent=AT1G14340; Name=AT1G14340.1; Note=RNA-binding (RRM/RBD/RNP motifs) family protein; conf_class=2; computational_description=RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: oxidoreductase activity%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: oxidation reduction%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395)%2C RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G01210.1)%3B Has 332 Blast hits to 332 proteins in 76 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 92%3B Plants - 229%3B Viruses - 0%3B Other Eukaryotes - 11 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18650403, locus:2012567; locus_type=protein_coding
AT1G14345.1	chr1:004899176	0.0	W/4899176-4899766	AT1G14345.1 CDS AT1G14345 ID=AT1G14345.1; Parent=AT1G14345; Name=AT1G14345.1; Note=NAD(P)-linked oxidoreductase superfamily protein; conf_class=1; computational_description=NAD(P)-linked oxidoreductase superfamily protein%3B FUNCTIONS IN: oxidoreductase activity%3B INVOLVED IN: oxidation reduction%3B LOCATED IN: chloroplast thylakoid membrane%2C chloroplast%2C membrane%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395)%3B Has 297 Blast hits to 297 proteins in 86 species: Archae - 0%3B Bacteria - 121%3B Metazoa - 0%3B Fungi - 0%3B Plants - 39%3B Viruses - 0%3B Other Eukaryotes - 137 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15322131, PMID:17432890, PMID:18650403, locus:505006122; locus_type=protein_coding
AT1G05067.1	chr1:004902919	0.0	W/4902919-4903476	AT1G05067.1 lnc_RNA AT1G05067 ID=AT1G05067.1; Parent=AT1G05067; Name=AT1G05067.1; locus_type=long_noncoding_rna
AT1G05073.1	chr1:004902989	0.0	C/4902989-4903303	AT1G05073.1 lnc_RNA AT1G05073 ID=AT1G05073.1; Parent=AT1G05073; Name=AT1G05073.1; locus_type=long_noncoding_rna
AT1TE15890	chr1:004908296	0.0	W/4908296-4908451	AT1TE15890 transposable_element AT1TE15890 ID=AT1TE15890; Name=AT1TE15890; Alias=ATCOPIA68
AT1G14350.1	chr1:004908427	0.0	W/4908427-4908519,4908607-4908653,4908820-4908876,4908978-4909050,4909157-4909212,4909309-4909476,4909572-4909866,4909962-4910104,4910184-4910451,4910537-4910647	AT1G14350.1 CDS AT1G14350 ID=AT1G14350.1; Parent=AT1G14350; Name=AT1G14350.1; Note=Duplicated homeodomain-like superfamily protein; curator_summary=Encodes a putative MYB transcription factor involved in stomata development%2C loss of FLP activity results in a failure of guard mother cells (GMCs) to adopt the guard cell fate%2C thus they continue to divide resulting in abnormal stomata consisting of clusters of numerous guard cell-like cells. This phenotype is enhanced in double mutants with MYB88. Its transcript levels change after inducing MUTE expression in a mute background.; conf_class=2; symbol=FLP; Alias=AtMYB124, myb domain protein 124, MYB124; full_name=FOUR LIPS; computational_description=FOUR LIPS (FLP)%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%2C Homeodomain-related (InterPro:IPR012287)%2C Myb transcription factor (InterPro:IPR015495)%3B BEST Arabidopsis thaliana protein match is: myb domain protein 88 (TAIR:AT2G02820.2)%3B Has 8541 Blast hits to 7630 proteins in 544 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 904%3B Fungi - 531%3B Plants - 5146%3B Viruses - 6%3B Other Eukaryotes - 1952 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9684356, PMID:9375390, PMID:11118137, PMID:11597504, PMID:11641073, PMID:12119372, PMID:16155180, PMID:18650403, PMID:20675570, PMID:21105921, PMID:21772250, PMID:22303215, PMID:23662679, PMID:24123248, PMID:24377444, PMID:22915737, PMID:24571519, PMID:24654956, PMID:24687979, locus:2012587; locus_type=protein_coding
AT1G14350.2	chr1:004908427	0.0	W/4908427-4908519,4908607-4908653,4908820-4908876,4908978-4909050,4909157-4909212,4909309-4909476,4909572-4909866,4909962-4910104,4910184-4910451,4910537-4910647	AT1G14350.2 CDS AT1G14350 ID=AT1G14350.2; Parent=AT1G14350; Name=AT1G14350.2; Note=Duplicated homeodomain-like superfamily protein; curator_summary=Encodes a putative MYB transcription factor involved in stomata development%2C loss of FLP activity results in a failure of guard mother cells (GMCs) to adopt the guard cell fate%2C thus they continue to divide resulting in abnormal stomata consisting of clusters of numerous guard cell-like cells. This phenotype is enhanced in double mutants with MYB88. Its transcript levels change after inducing MUTE expression in a mute background.; conf_class=2; symbol=FLP; Alias=AtMYB124, myb domain protein 124, MYB124; full_name=FOUR LIPS; computational_description=FOUR LIPS (FLP)%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%2C Homeodomain-related (InterPro:IPR012287)%2C Myb transcription factor (InterPro:IPR015495)%3B BEST Arabidopsis thaliana protein match is: myb domain protein 88 (TAIR:AT2G02820.2)%3B Has 8541 Blast hits to 7630 proteins in 544 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 904%3B Fungi - 531%3B Plants - 5146%3B Viruses - 6%3B Other Eukaryotes - 1952 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9684356, PMID:9375390, PMID:11118137, PMID:11597504, PMID:11641073, PMID:12119372, PMID:16155180, PMID:18650403, PMID:20675570, PMID:21105921, PMID:21772250, PMID:22303215, PMID:23662679, PMID:24123248, PMID:24377444, PMID:22915737, PMID:24571519, PMID:24654956, PMID:24687979, locus:2012587; locus_type=protein_coding
AT1G14350.3	chr1:004908641	0.0	W/4908641-4908653,4908923-4909050,4909157-4909212,4909309-4909476,4909572-4909866,4909962-4910104,4910184-4910451,4910537-4910647	AT1G14350.3 CDS AT1G14350 ID=AT1G14350.3; Parent=AT1G14350; Name=AT1G14350.3; Note=Duplicated homeodomain-like superfamily protein; symbol=FLP; Alias=AtMYB124, myb domain protein 124, MYB124; full_name=FOUR LIPS; curator_summary=Encodes a putative MYB transcription factor involved in stomata development%2C loss of FLP activity results in a failure of guard mother cells (GMCs) to adopt the guard cell fate%2C thus they continue to divide resulting in abnormal stomata consisting of clusters of numerous guard cell-like cells. This phenotype is enhanced in double mutants with MYB88. Its transcript levels change after inducing MUTE expression in a mute background.; computational_description=FOUR LIPS (FLP)%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%2C Homeodomain-related (InterPro:IPR012287)%2C Myb transcription factor (InterPro:IPR015495)%3B BEST Arabidopsis thaliana protein match is: myb domain protein 88 (TAIR:AT2G02820.2)%3B Has 8541 Blast hits to 7630 proteins in 544 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 904%3B Fungi - 531%3B Plants - 5146%3B Viruses - 6%3B Other Eukaryotes - 1952 (source: NCBI BLink).; Dbxref=PMID:9684356, PMID:9375390, PMID:11118137, PMID:11597504, PMID:11641073, PMID:12119372, PMID:16155180, PMID:18650403, PMID:20675570, PMID:21105921, PMID:21772250, PMID:22303215, PMID:23662679, PMID:24123248, PMID:24377444, PMID:22915737, PMID:24571519, PMID:24654956, PMID:24687979, locus:2012587; locus_type=protein_coding
AT1G14350.4	chr1:004908641	0.0	W/4908641-4908653,4908923-4909050,4909157-4909212,4909309-4909476,4909572-4909866,4909962-4910104,4910184-4910451,4910537-4910647	AT1G14350.4 CDS AT1G14350 ID=AT1G14350.4; Parent=AT1G14350; Name=AT1G14350.4; Note=Duplicated homeodomain-like superfamily protein; symbol=FLP; Alias=AtMYB124, myb domain protein 124, MYB124; full_name=FOUR LIPS; curator_summary=Encodes a putative MYB transcription factor involved in stomata development%2C loss of FLP activity results in a failure of guard mother cells (GMCs) to adopt the guard cell fate%2C thus they continue to divide resulting in abnormal stomata consisting of clusters of numerous guard cell-like cells. This phenotype is enhanced in double mutants with MYB88. Its transcript levels change after inducing MUTE expression in a mute background.; computational_description=FOUR LIPS (FLP)%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%2C Homeodomain-related (InterPro:IPR012287)%2C Myb transcription factor (InterPro:IPR015495)%3B BEST Arabidopsis thaliana protein match is: myb domain protein 88 (TAIR:AT2G02820.2)%3B Has 8541 Blast hits to 7630 proteins in 544 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 904%3B Fungi - 531%3B Plants - 5146%3B Viruses - 6%3B Other Eukaryotes - 1952 (source: NCBI BLink).; Dbxref=PMID:9684356, PMID:9375390, PMID:11118137, PMID:11597504, PMID:11641073, PMID:12119372, PMID:16155180, PMID:18650403, PMID:20675570, PMID:21105921, PMID:21772250, PMID:22303215, PMID:23662679, PMID:24123248, PMID:24377444, PMID:22915737, PMID:24571519, PMID:24654956, PMID:24687979, locus:2012587; locus_type=protein_coding
AT1G14360.1	chr1:004911362	0.0	C/4911362-4911767,4911865-4911986,4912079-4912182,4912268-4912298,4912413-4912543,4912639-4912736,4912926-4913029	AT1G14360.1 CDS AT1G14360 ID=AT1G14360.1; Parent=AT1G14360; Name=AT1G14360.1; Note=UDP-galactose transporter 3; conf_class=2; symbol=UTR3; Alias=ATUTR3; full_name=UDP-galactose transporter 3; computational_description=UDP-galactose transporter 3 (UTR3)%3B FUNCTIONS IN: pyrimidine nucleotide sugar transmembrane transporter activity%3B INVOLVED IN: transmembrane transport%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: UAA transporter (InterPro:IPR013657)%3B BEST Arabidopsis thaliana protein match is: UDP-galactose transporter 1 (TAIR:AT2G02810.1)%3B Has 1048 Blast hits to 1040 proteins in 233 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 487%3B Fungi - 154%3B Plants - 232%3B Viruses - 0%3B Other Eukaryotes - 175 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12042319, PMID:15456736, PMID:15894741, PMID:18650403, PMID:18775970, PMID:18849477, PMID:19906043, PMID:20736450, locus:2012482; locus_type=protein_coding
AT1G14370.1	chr1:004915859	0.0	W/4915859-4915925,4916195-4916541,4916636-4916771,4916873-4917009,4917096-4917219,4917490-4917959	AT1G14370.1 CDS AT1G14370 ID=AT1G14370.1; Parent=AT1G14370; Name=AT1G14370.1; Note=protein kinase 2A; curator_summary=Encodes protein kinase APK2a. Protein is N-myristoylated.; conf_class=2; symbol=APK2A; Alias=Kin1, kinase 1, PBL2, PBS1-like 2; full_name=protein kinase 2A; computational_description=protein kinase 2A (APK2A)%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: protein kinase 2B (TAIR:AT2G02800.2)%3B Has 112844 Blast hits to 111359 proteins in 3847 species: Archae - 89%3B Bacteria - 13219%3B Metazoa - 41419%3B Fungi - 9318%3B Plants - 32676%3B Viruses - 341%3B Other Eukaryotes - 15782 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9150601, PMID:14576160, PMID:17142483, PMID:18650403, PMID:20413097, PMID:20736450, PMID:21477822, PMID:21219905, PMID:22744984, PMID:22740685, PMID:22654057, PMID:23435172, PMID:23682113, PMID:23951354, PMID:25522736, locus:2012492; locus_type=protein_coding
AT1G05077.1	chr1:004915883	0.0	C/4915883-4916216	AT1G05077.1 antisense_lncRNA AT1G05077 ID=AT1G05077.1; Parent=AT1G05077; Name=AT1G05077.1; description=Natural antisense transcript overlaps with AT1G14370; Note=Natural antisense transcript overlaps with AT1G14370; locus_type=antisense_long_noncoding_rna
AT1G14380.1	chr1:004918279	0.0	C/4918279-4918310,4918407-4919775,4919915-4919995,4920085-4920273,4920359-4920592,4920672-4920761	AT1G14380.1 CDS AT1G14380 ID=AT1G14380.1; Parent=AT1G14380; Name=AT1G14380.1; Note=IQ-domain 28; curator_summary=Encodes a microtubule-associated protein.; conf_class=2; symbol=IQD28; full_name=IQ-domain 28; computational_description=IQ-domain 28 (IQD28)%3B FUNCTIONS IN: calmodulin binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048)%3B BEST Arabidopsis thaliana protein match is: IQ-domain 29 (TAIR:AT2G02790.1)%3B Has 6802 Blast hits to 5296 proteins in 468 species: Archae - 2%3B Bacteria - 474%3B Metazoa - 2682%3B Fungi - 509%3B Plants - 1003%3B Viruses - 37%3B Other Eukaryotes - 2095 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16368012, PMID:24134884, locus:2012507; locus_type=protein_coding
AT1G14380.2	chr1:004918279	0.0	C/4918279-4918310,4918407-4919037,4919224-4919775,4919915-4919995,4920085-4920273,4920359-4920592,4920672-4920761	AT1G14380.2 CDS AT1G14380 ID=AT1G14380.2; Parent=AT1G14380; Name=AT1G14380.2; Note=IQ-domain 28; curator_summary=Encodes a microtubule-associated protein.; conf_class=3; symbol=IQD28; full_name=IQ-domain 28; computational_description=IQ-domain 28 (IQD28)%3B FUNCTIONS IN: calmodulin binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048)%3B BEST Arabidopsis thaliana protein match is: IQ-domain 29 (TAIR:AT2G02790.1)%3B Has 6802 Blast hits to 5296 proteins in 468 species: Archae - 2%3B Bacteria - 474%3B Metazoa - 2682%3B Fungi - 509%3B Plants - 1003%3B Viruses - 37%3B Other Eukaryotes - 2095 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16368012, PMID:24134884, locus:2012507; locus_type=protein_coding
AT1G14380.3	chr1:004918279	0.0	C/4918279-4918310,4918407-4919775,4919915-4919995,4920085-4920273,4920359-4920592,4920672-4920761	AT1G14380.3 CDS AT1G14380 ID=AT1G14380.3; Parent=AT1G14380; Name=AT1G14380.3; Note=IQ-domain 28; curator_summary=Encodes a microtubule-associated protein.; conf_class=2; symbol=IQD28; full_name=IQ-domain 28; computational_description=IQ-domain 28 (IQD28)%3B FUNCTIONS IN: calmodulin binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048)%3B BEST Arabidopsis thaliana protein match is: IQ-domain 29 (TAIR:AT2G02790.1)%3B Has 6802 Blast hits to 5296 proteins in 468 species: Archae - 2%3B Bacteria - 474%3B Metazoa - 2682%3B Fungi - 509%3B Plants - 1003%3B Viruses - 37%3B Other Eukaryotes - 2095 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16368012, PMID:24134884, locus:2012507; locus_type=protein_coding
AT1G14380.4	chr1:004918279	0.0	C/4918279-4918310,4918407-4919775,4919915-4919995,4920085-4920273,4920359-4920592,4920672-4920761	AT1G14380.4 CDS AT1G14380 ID=AT1G14380.4; Parent=AT1G14380; Name=AT1G14380.4; Note=IQ-domain 28; symbol=IQD28; full_name=IQ-domain 28; Dbxref=PMID:16368012, PMID:24134884, locus:2012507; curator_summary=Encodes a microtubule-associated protein.; computational_description=IQ-domain 28 (IQD28)%3B FUNCTIONS IN: calmodulin binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048)%3B BEST Arabidopsis thaliana protein match is: IQ-domain 29 (TAIR:AT2G02790.1)%3B Has 6802 Blast hits to 5296 proteins in 468 species: Archae - 2%3B Bacteria - 474%3B Metazoa - 2682%3B Fungi - 509%3B Plants - 1003%3B Viruses - 37%3B Other Eukaryotes - 2095 (source: NCBI BLink).; locus_type=protein_coding
AT1G14380.5	chr1:004918279	0.0	C/4918279-4918310,4918407-4919037,4919224-4919775,4919915-4919995,4920085-4920273,4920359-4920592,4920672-4920761	AT1G14380.5 CDS AT1G14380 ID=AT1G14380.5; Parent=AT1G14380; Name=AT1G14380.5; Note=IQ-domain 28; symbol=IQD28; full_name=IQ-domain 28; Dbxref=PMID:16368012, PMID:24134884, locus:2012507; curator_summary=Encodes a microtubule-associated protein.; computational_description=IQ-domain 28 (IQD28)%3B FUNCTIONS IN: calmodulin binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048)%3B BEST Arabidopsis thaliana protein match is: IQ-domain 29 (TAIR:AT2G02790.1)%3B Has 6802 Blast hits to 5296 proteins in 468 species: Archae - 2%3B Bacteria - 474%3B Metazoa - 2682%3B Fungi - 509%3B Plants - 1003%3B Viruses - 37%3B Other Eukaryotes - 2095 (source: NCBI BLink).; locus_type=protein_coding
AT1G14380.6	chr1:004918279	0.0	C/4918279-4918310,4918407-4919037,4919224-4919775,4919915-4919995,4920085-4920273,4920359-4920592,4920672-4920761	AT1G14380.6 CDS AT1G14380 ID=AT1G14380.6; Parent=AT1G14380; Name=AT1G14380.6; Note=IQ-domain 28; symbol=IQD28; full_name=IQ-domain 28; Dbxref=PMID:16368012, PMID:24134884, locus:2012507; curator_summary=Encodes a microtubule-associated protein.; computational_description=IQ-domain 28 (IQD28)%3B FUNCTIONS IN: calmodulin binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048)%3B BEST Arabidopsis thaliana protein match is: IQ-domain 29 (TAIR:AT2G02790.1)%3B Has 6802 Blast hits to 5296 proteins in 468 species: Archae - 2%3B Bacteria - 474%3B Metazoa - 2682%3B Fungi - 509%3B Plants - 1003%3B Viruses - 37%3B Other Eukaryotes - 2095 (source: NCBI BLink).; locus_type=protein_coding
AT1G14380.7	chr1:004918279	0.0	C/4918279-4918310,4918407-4918953,4919224-4919775,4919915-4919995,4920085-4920273,4920359-4920592,4920672-4920761	AT1G14380.7 CDS AT1G14380 ID=AT1G14380.7; Parent=AT1G14380; Name=AT1G14380.7; Note=IQ-domain 28; symbol=IQD28; full_name=IQ-domain 28; curator_summary=Encodes a microtubule-associated protein.; computational_description=IQ-domain 28 (IQD28)%3B FUNCTIONS IN: calmodulin binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048)%3B BEST Arabidopsis thaliana protein match is: IQ-domain 29 (TAIR:AT2G02790.1)%3B Has 6802 Blast hits to 5296 proteins in 468 species: Archae - 2%3B Bacteria - 474%3B Metazoa - 2682%3B Fungi - 509%3B Plants - 1003%3B Viruses - 37%3B Other Eukaryotes - 2095 (source: NCBI BLink).; Dbxref=PMID:16368012, PMID:24134884, locus:2012507; locus_type=protein_coding
AT1G05083.1	chr1:004920783	0.0	W/4920783-4921480	AT1G05083.1 antisense_lncRNA AT1G05083 ID=AT1G05083.1; Parent=AT1G05083; Name=AT1G05083.1; description=Natural antisense transcript overlaps with AT1G14380; Note=Natural antisense transcript overlaps with AT1G14380; locus_type=antisense_long_noncoding_rna
AT1G14390.1	chr1:004924277	0.0	W/4924277-4925522,4925599-4925720,4925800-4926046,4926127-4926320,4926417-4926794	AT1G14390.1 CDS AT1G14390 ID=AT1G14390.1; Parent=AT1G14390; Name=AT1G14390.1; Note=Leucine-rich repeat protein kinase family protein; conf_class=3; computational_description=Leucine-rich repeat protein kinase family protein%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C ATP binding%3B INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway%2C protein amino acid phosphorylation%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: inflorescence meristem%2C root%2C flower%3B EXPRESSED DURING: petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Leucine-rich repeat (InterPro:IPR001611)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%3B BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT2G02780.1)%3B Has 96517 Blast hits to 51613 proteins in 1566 species: Archae - 24%3B Bacteria - 6061%3B Metazoa - 18233%3B Fungi - 1323%3B Plants - 64840%3B Viruses - 89%3B Other Eukaryotes - 5947 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12972053, PMID:16843620, locus:2012522; locus_type=protein_coding
AT1G14400.1	chr1:004927294	0.0	C/4927294-4927422,4927518-4927606,4927704-4927793,4927890-4927915,4928012-4928136	AT1G14400.1 CDS AT1G14400 ID=AT1G14400.1; Parent=AT1G14400; Name=AT1G14400.1; Note=ubiquitin carrier protein 1; curator_summary=ubiquitin carrier protein; conf_class=2; symbol=UBC1; Alias=ATUBC1; full_name=ubiquitin carrier protein 1; computational_description=ubiquitin carrier protein 1 (UBC1)%3B CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135)%2C Ubiquitin-conjugating enzyme%2C E2 (InterPro:IPR000608)%3B BEST Arabidopsis thaliana protein match is: ubiquiting-conjugating enzyme 2 (TAIR:AT2G02760.1)%3B Has 10640 Blast hits to 10586 proteins in 402 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 4553%3B Fungi - 2331%3B Plants - 2017%3B Viruses - 26%3B Other Eukaryotes - 1711 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9261152, PMID:9048545, PMID:8790283, PMID:8078482, PMID:8155884, PMID:8219072, PMID:8386169, PMID:8220461, PMID:1321826, PMID:1660887, PMID:11590065, PMID:11019805, PMID:16339806, PMID:18798874, PMID:18775970, PMID:18849490, PMID:18980658, PMID:21333657, locus:2012622; locus_type=protein_coding
AT1G14400.2	chr1:004927294	0.0	C/4927294-4927422,4927518-4927606,4927704-4927793,4927890-4927915,4928012-4928136	AT1G14400.2 CDS AT1G14400 ID=AT1G14400.2; Parent=AT1G14400; Name=AT1G14400.2; Note=ubiquitin carrier protein 1; curator_summary=ubiquitin carrier protein; conf_class=2; symbol=UBC1; Alias=ATUBC1; full_name=ubiquitin carrier protein 1; computational_description=ubiquitin carrier protein 1 (UBC1)%3B CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135)%2C Ubiquitin-conjugating enzyme%2C E2 (InterPro:IPR000608)%3B BEST Arabidopsis thaliana protein match is: ubiquiting-conjugating enzyme 2 (TAIR:AT2G02760.1)%3B Has 10640 Blast hits to 10586 proteins in 402 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 4553%3B Fungi - 2331%3B Plants - 2017%3B Viruses - 26%3B Other Eukaryotes - 1711 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9261152, PMID:9048545, PMID:8790283, PMID:8078482, PMID:8155884, PMID:8219072, PMID:8386169, PMID:8220461, PMID:1321826, PMID:1660887, PMID:11590065, PMID:11019805, PMID:16339806, PMID:18798874, PMID:18775970, PMID:18849490, PMID:18980658, PMID:21333657, locus:2012622; locus_type=protein_coding
AT1G14410.1	chr1:004929352	0.0	C/4929352-4929471,4929563-4929651,4929725-4929798,4929878-4929972,4930106-4930198,4930291-4930391,4930591-4930810	AT1G14410.1 CDS AT1G14410 ID=AT1G14410.1; Parent=AT1G14410; Name=AT1G14410.1; Note=ssDNA-binding transcriptional regulator; curator_summary=Encodes a homolog of the potato p24 protein. Binds single strand telomeric repeats. Negatively regulates telomerase activity and telomere length.; conf_class=2; symbol=WHY1; Alias=ATWHY1, A. THALIANA WHIRLY 1, PTAC1; full_name=WHIRLY 1; computational_description=WHIRLY 1 (WHY1)%3B FUNCTIONS IN: DNA binding%2C telomeric DNA binding%3B INVOLVED IN: negative regulation of telomere maintenance via telomerase%2C defense response%3B LOCATED IN: plastid chromosome%2C chloroplast%2C nucleoid%2C telomerase holoenzyme complex%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: ssDNA-binding transcriptional regulator (InterPro:IPR009044)%2C Plant transcription factor (InterPro:IPR013742)%3B BEST Arabidopsis thaliana protein match is: ssDNA-binding transcriptional regulator (TAIR:AT2G02740.2)%3B Has 106 Blast hits to 105 proteins in 26 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 96%3B Viruses - 0%3B Other Eukaryotes - 10 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:15967440, PMID:16326926, PMID:19669906, PMID:19666500, PMID:20551348, PMID:21911368, PMID:23269926, PMID:23922267, PMID:23969600, PMID:24192350, PMID:25620972, locus:2012542; locus_type=protein_coding
AT1TE15960	chr1:004931018	0.0	C/4931018-4931086	AT1TE15960 transposable_element AT1TE15960 ID=AT1TE15960; Name=AT1TE15960; Alias=ATCOPIA57
AT1G14420.1	chr1:004931844	0.0	C/4931844-4932326,4932424-4933111,4933197-4933405	AT1G14420.1 CDS AT1G14420 ID=AT1G14420.1; Parent=AT1G14420; Name=AT1G14420.1; Note=Pectate lyase family protein; conf_class=1; symbol=AT59; computational_description=AT59%3B FUNCTIONS IN: lyase activity%2C pectate lyase activity%3B INVOLVED IN: plant-type cell wall organization%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 9 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%2C C globular stage%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050)%2C Pectate lyase%2C N-terminal (InterPro:IPR007524)%2C AmbAllergen (InterPro:IPR018082)%2C Pectate lyase/Amb allergen (InterPro:IPR002022)%2C Pectin lyase fold (InterPro:IPR012334)%3B BEST Arabidopsis thaliana protein match is: Pectate lyase family protein (TAIR:AT2G02720.1)%3B Has 1736 Blast hits to 1725 proteins in 285 species: Archae - 2%3B Bacteria - 722%3B Metazoa - 0%3B Fungi - 281%3B Plants - 703%3B Viruses - 0%3B Other Eukaryotes - 28 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:9278171, PMID:12805594, PMID:14500793, PMID:14648238, PMID:18775970, PMID:20649977, locus:2012562; locus_type=protein_coding
AT1G14430.1	chr1:004934359	0.0	W/4934359-4936053	AT1G14430.1 CDS AT1G14430 ID=AT1G14430.1; Parent=AT1G14430; Name=AT1G14430.1; Note=glyoxal oxidase-related protein; conf_class=1; computational_description=glyoxal oxidase-related protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch%2C beta-propeller (InterPro:IPR011043)%2C Galactose oxidase%2C beta-propeller (InterPro:IPR015916)%2C Immunoglobulin E-set (InterPro:IPR014756)%2C Glyoxal oxidase%2C N-terminal (InterPro:IPR009880)%2C Domain of unknown function DUF1929 (InterPro:IPR015202)%3B BEST Arabidopsis thaliana protein match is: glyoxal oxidase-related protein (TAIR:AT3G57620.1)%3B Has 1265 Blast hits to 1255 proteins in 183 species: Archae - 0%3B Bacteria - 321%3B Metazoa - 2%3B Fungi - 244%3B Plants - 682%3B Viruses - 0%3B Other Eukaryotes - 16 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:2012582; locus_type=protein_coding
AT1G14440.1	chr1:004939076	0.0	C/4939076-4940014	AT1G14440.1 CDS AT1G14440 ID=AT1G14440.1; Parent=AT1G14440; Name=AT1G14440.1; Note=homeobox protein 31; conf_class=2; symbol=HB31; Alias=AtHB31, homeobox protein 31, FTM2, FLORAL TRANSITION AT THE MERISTEM2, ZHD4, ZINC FINGER HOMEODOMAIN 4; full_name=homeobox protein 31; computational_description=homeobox protein 31 (HB31)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Homeobox domain%2C ZF-HD class (InterPro:IPR006455)%2C ZF-HD homeobox protein%2C Cys/His-rich dimerisation domain (InterPro:IPR006456)%2C Homeodomain-related (InterPro:IPR012287)%3B BEST Arabidopsis thaliana protein match is: homeobox protein 21 (TAIR:AT2G02540.1)%3B Has 602 Blast hits to 562 proteins in 67 species: Archae - 0%3B Bacteria - 10%3B Metazoa - 45%3B Fungi - 3%3B Plants - 505%3B Viruses - 0%3B Other Eukaryotes - 39 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16428600, PMID:16920880, PMID:18359847, PMID:20736450, PMID:21059647, PMID:22319055, PMID:24335333, locus:2012602; locus_type=protein_coding
AT1G14440.2	chr1:004939076	0.0	C/4939076-4940014	AT1G14440.2 CDS AT1G14440 ID=AT1G14440.2; Parent=AT1G14440; Name=AT1G14440.2; Note=homeobox protein 31; conf_class=2; symbol=HB31; Alias=AtHB31, homeobox protein 31, FTM2, FLORAL TRANSITION AT THE MERISTEM2, ZHD4, ZINC FINGER HOMEODOMAIN 4; full_name=homeobox protein 31; computational_description=homeobox protein 31 (HB31)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Homeobox domain%2C ZF-HD class (InterPro:IPR006455)%2C ZF-HD homeobox protein%2C Cys/His-rich dimerisation domain (InterPro:IPR006456)%2C Homeodomain-related (InterPro:IPR012287)%3B BEST Arabidopsis thaliana protein match is: homeobox protein 21 (TAIR:AT2G02540.1)%3B Has 602 Blast hits to 562 proteins in 67 species: Archae - 0%3B Bacteria - 10%3B Metazoa - 45%3B Fungi - 3%3B Plants - 505%3B Viruses - 0%3B Other Eukaryotes - 39 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16428600, PMID:16920880, PMID:18359847, PMID:20736450, PMID:21059647, PMID:22319055, PMID:24335333, locus:2012602; locus_type=protein_coding
AT1TE16010	chr1:004945121	0.0	W/4945121-4945380	AT1TE16010 transposable_element AT1TE16010 ID=AT1TE16010; Name=AT1TE16010; Alias=ARNOLDY2
AT1G14453.1	chr1:004947330	0.0	W/4947330-4947566,4947944-4947976	AT1G14453.1 CDS AT1G14453 ID=AT1G14453.1; Parent=AT1G14453; Name=AT1G14453.1; Note=hypothetical protein; locus_type=protein_coding
AT1G14450.1	chr1:004947337	0.0	C/4947337-4947558	AT1G14450.1 CDS AT1G14450 ID=AT1G14450.1; Parent=AT1G14450; Name=AT1G14450.1; Note=NADH dehydrogenase (ubiquinone)s; conf_class=2; computational_description=NADH dehydrogenase (ubiquinone)s%3B FUNCTIONS IN: NADH dehydrogenase (ubiquinone) activity%3B INVOLVED IN: photorespiration%3B LOCATED IN: mitochondrial membrane%2C respiratory chain complex I%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: NADH:ubiquinone oxidoreductase%2C B12 subunit (InterPro:IPR012576)%3B BEST Arabidopsis thaliana protein match is: NADH dehydrogenase (ubiquinone)s (TAIR:AT2G02510.1)%3B Has 62 Blast hits to 62 proteins in 20 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 8%3B Plants - 53%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16407270, PMID:18189341, PMID:18775970, PMID:21167537, locus:2012592; locus_type=protein_coding
AT1G14450.2	chr1:004947337	0.0	C/4947337-4947630	AT1G14450.2 CDS AT1G14450 ID=AT1G14450.2; Parent=AT1G14450; Name=AT1G14450.2; Note=NADH dehydrogenase (ubiquinone)s; computational_description=NADH dehydrogenase (ubiquinone)s%3B FUNCTIONS IN: NADH dehydrogenase (ubiquinone) activity%3B INVOLVED IN: photorespiration%3B LOCATED IN: mitochondrial membrane%2C respiratory chain complex I%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: NADH:ubiquinone oxidoreductase%2C B12 subunit (InterPro:IPR012576)%3B BEST Arabidopsis thaliana protein match is: NADH dehydrogenase (ubiquinone)s (TAIR:AT2G02510.1)%3B Has 62 Blast hits to 62 proteins in 20 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 8%3B Plants - 53%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; Dbxref=PMID:16407270, PMID:18189341, PMID:18775970, PMID:21167537, locus:2012592; locus_type=protein_coding
AT1G14455.1	chr1:004947985	0.0	C/4947985-4948278	AT1G14455.1 CDS AT1G14455 ID=AT1G14455.1; Parent=AT1G14455; Name=AT1G14455.1; Note=hypothetical protein; conf_class=1; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:4515102532; locus_type=protein_coding
AT1G14460.1	chr1:004948962	0.0	C/4948962-4949045,4949138-4949219,4949302-4949776,4949855-4950364,4950455-4950674,4950771-4952750	AT1G14460.1 CDS AT1G14460 ID=AT1G14460.1; Parent=AT1G14460; Name=AT1G14460.1; Note=AAA-type ATPase family protein; conf_class=2; computational_description=AAA-type ATPase family protein%3B FUNCTIONS IN: nucleoside-triphosphatase activity%2C DNA binding%2C DNA-directed DNA polymerase activity%2C nucleotide binding%2C ATP binding%3B INVOLVED IN: DNA replication%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: ATPase%2C AAA-type%2C core (InterPro:IPR003959)%2C ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C DNA polymerase III%2C clamp loader complex%2C gamma/delta/delta subunit%2C C-terminal (InterPro:IPR008921)%2C DNA polymerase III%2C subunit gamma/ tau (InterPro:IPR012763)%3B BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT2G02480.1)%3B Has 16118 Blast hits to 16088 proteins in 2833 species: Archae - 487%3B Bacteria - 9881%3B Metazoa - 404%3B Fungi - 514%3B Plants - 302%3B Viruses - 52%3B Other Eukaryotes - 4478 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16081527, PMID:20226671, locus:2012497; locus_type=protein_coding
AT1G05093.1	chr1:004953017	0.0	W/4953017-4953522	AT1G05093.1 lnc_RNA AT1G05093 ID=AT1G05093.1; Parent=AT1G05093; Name=AT1G05093.1; locus_type=long_noncoding_rna
AT1G14470.1	chr1:004954080	0.0	W/4954080-4955702	AT1G14470.1 CDS AT1G14470 ID=AT1G14470.1; Parent=AT1G14470; Name=AT1G14470.1; Note=Pentatricopeptide repeat (PPR) superfamily protein; conf_class=4; computational_description=Pentatricopeptide repeat (PPR) superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G08070.1)%3B Has 45588 Blast hits to 14013 proteins in 255 species: Archae - 1%3B Bacteria - 22%3B Metazoa - 282%3B Fungi - 244%3B Plants - 44188%3B Viruses - 0%3B Other Eukaryotes - 851 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:15269332, PMID:17521445, locus:2012517; locus_type=protein_coding
AT1G14480.1	chr1:004956404	0.0	W/4956404-4957000,4957160-4957888	AT1G14480.1 CDS AT1G14480 ID=AT1G14480.1; Parent=AT1G14480; Name=AT1G14480.1; Note=Ankyrin repeat family protein; conf_class=2; computational_description=Ankyrin repeat family protein%3B CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683)%2C Ankyrin repeat (InterPro:IPR002110)%3B BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT1G14500.1)%3B Has 8895 Blast hits to 5065 proteins in 313 species: Archae - 10%3B Bacteria - 564%3B Metazoa - 4493%3B Fungi - 246%3B Plants - 1339%3B Viruses - 29%3B Other Eukaryotes - 2214 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2012532; locus_type=protein_coding
AT1G14480.2	chr1:004956404	0.0	W/4956404-4956871,4957160-4957888	AT1G14480.2 CDS AT1G14480 ID=AT1G14480.2; Parent=AT1G14480; Name=AT1G14480.2; Note=Ankyrin repeat family protein; conf_class=4; computational_description=Ankyrin repeat family protein%3B CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683)%2C Ankyrin repeat (InterPro:IPR002110)%3B BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT1G14500.1)%3B Has 8895 Blast hits to 5065 proteins in 313 species: Archae - 10%3B Bacteria - 564%3B Metazoa - 4493%3B Fungi - 246%3B Plants - 1339%3B Viruses - 29%3B Other Eukaryotes - 2214 (source: NCBI BLink).; conf_rating=***; Dbxref=locus:2012532; locus_type=protein_coding
AT1G14490.1	chr1:004958705	0.0	C/4958705-4959325	AT1G14490.1 CDS AT1G14490 ID=AT1G14490.1; Parent=AT1G14490; Name=AT1G14490.1; Note=Putative AT-hook DNA-binding family protein; conf_class=1; Alias=AHL28, AT-hook motif nuclear localized protein 28; computational_description=Predicted AT-hook DNA-binding family protein%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175)%2C Predicted AT-hook DNA-binding (InterPro:IPR014476)%3B BEST Arabidopsis thaliana protein match is: Predicted AT-hook DNA-binding family protein (TAIR:AT5G49700.1)%3B Has 747 Blast hits to 743 proteins in 22 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 747%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:20736450, PMID:24218605, locus:2012537; locus_type=protein_coding
AT1G14490.2	chr1:004958705	0.0	C/4958705-4959382	AT1G14490.2 CDS AT1G14490 ID=AT1G14490.2; Parent=AT1G14490; Name=AT1G14490.2; Note=Putative AT-hook DNA-binding family protein; Alias=AHL28, AT-hook motif nuclear localized protein 28; computational_description=Predicted AT-hook DNA-binding family protein%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175)%2C Predicted AT-hook DNA-binding (InterPro:IPR014476)%3B BEST Arabidopsis thaliana protein match is: Predicted AT-hook DNA-binding family protein (TAIR:AT5G49700.1)%3B Has 747 Blast hits to 743 proteins in 22 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 747%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=PMID:20736450, PMID:24218605, locus:2012537; locus_type=protein_coding
AT1G14500.1	chr1:004960375	0.0	W/4960375-4960971,4961067-4961780	AT1G14500.1 CDS AT1G14500 ID=AT1G14500.1; Parent=AT1G14500; Name=AT1G14500.1; Note=Ankyrin repeat family protein; conf_class=8; computational_description=Ankyrin repeat family protein%3B CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683)%2C Ankyrin repeat (InterPro:IPR002110)%3B BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT1G14480.1)%3B Has 10084 Blast hits to 5540 proteins in 307 species: Archae - 14%3B Bacteria - 721%3B Metazoa - 5684%3B Fungi - 405%3B Plants - 1520%3B Viruses - 27%3B Other Eukaryotes - 1713 (source: NCBI BLink).; conf_rating=*; Dbxref=locus:2012557; locus_type=protein_coding
AT1G14510.1	chr1:004962171	0.0	C/4962171-4962443,4962539-4962665,4963066-4963294,4963810-4963842,4964058-4964154	AT1G14510.1 CDS AT1G14510 ID=AT1G14510.1; Parent=AT1G14510; Name=AT1G14510.1; Note=alfin-like 7; curator_summary=Encodes a member of the Alfin1-like family of nuclear-localized PHD (plant homeodomain) domain containing proteins. All AL proteins except AL3 bind to di- or trimethylated histone H3 (H3K4me3/2). Members of this family include: AT5G05610 (AL1)%2C AT3G11200 (AL2)%2C AT3G42790 (AL3)%2C AT5G26210 (AL4)%2C AT5G20510 (AL5)%2C AT2G02470 (AL6)%2C AT1G14510 (AL7).; conf_class=2; symbol=AL7; Alias=AtAL7; full_name=alfin-like 7; computational_description=alfin-like 7 (AL7)%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C PHD-type%2C conserved site (InterPro:IPR019786)%2C Protein of unknown function DUF3594 (InterPro:IPR021998)%2C Zinc finger%2C PHD-type (InterPro:IPR001965)%2C Zinc finger%2C FYVE/PHD-type (InterPro:IPR011011)%2C Zinc finger%2C PHD-finger (InterPro:IPR019787)%3B BEST Arabidopsis thaliana protein match is: alfin-like 6 (TAIR:AT2G02470.1)%3B Has 1825 Blast hits to 1776 proteins in 181 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 841%3B Fungi - 323%3B Plants - 580%3B Viruses - 0%3B Other Eukaryotes - 81 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18650403, PMID:18775970, PMID:19154204, PMID:23840867, PMID:24465219, locus:2012577; locus_type=protein_coding
AT1TE16080	chr1:004966556	0.0	W/4966556-4967016	AT1TE16080 transposable_element AT1TE16080 ID=AT1TE16080; Name=AT1TE16080; Alias=ATREP6
AT1G14518.1	chr1:004966810	0.0	C/4966810-4967493	AT1G14518.1 ncRNA AT1G14518 ID=AT1G14518.1; Parent=AT1G14518; Name=AT1G14518.1; index=1; curator_summary=Unknown gene; Dbxref=locus:4010713443; Note=other_RNA; locus_type=other_rna
AT1G14520.1	chr1:004968376	0.0	C/4968376-4968402,4968501-4968661,4968761-4968830,4968917-4969039,4969130-4969242,4969331-4969617,4969691-4969808,4969918-4969954	AT1G14520.1 CDS AT1G14520 ID=AT1G14520.1; Parent=AT1G14520; Name=AT1G14520.1; Note=myo-inositol oxygenase 1; curator_summary=Encodes MIOX1. Belongs to myo-inositol oxygenase gene family.; conf_class=2; symbol=MIOX1; full_name=myo-inositol oxygenase 1; computational_description=myo-inositol oxygenase 1 (MIOX1)%3B FUNCTIONS IN: inositol oxygenase activity%2C oxidoreductase activity%3B INVOLVED IN: syncytium formation%3B LOCATED IN: cytoplasm%3B EXPRESSED IN: 6 plant structures%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF706 (InterPro:IPR007828)%3B BEST Arabidopsis thaliana protein match is: myo-inositol oxygenase 2 (TAIR:AT2G19800.1)%3B Has 490 Blast hits to 488 proteins in 159 species: Archae - 0%3B Bacteria - 27%3B Metazoa - 132%3B Fungi - 132%3B Plants - 97%3B Viruses - 0%3B Other Eukaryotes - 102 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14976233, PMID:15660207, PMID:19691674, PMID:21394467, PMID:24117492, locus:2012572; locus_type=protein_coding
AT1G14520.2	chr1:004968376	0.0	C/4968376-4968402,4968501-4968661,4968761-4968830,4968917-4969039,4969130-4969242,4969331-4969617,4969691-4969802,4969918-4969954	AT1G14520.2 CDS AT1G14520 ID=AT1G14520.2; Parent=AT1G14520; Name=AT1G14520.2; Note=myo-inositol oxygenase 1; curator_summary=Encodes MIOX1. Belongs to myo-inositol oxygenase gene family.; conf_class=2; symbol=MIOX1; full_name=myo-inositol oxygenase 1; computational_description=myo-inositol oxygenase 1 (MIOX1)%3B FUNCTIONS IN: inositol oxygenase activity%2C oxidoreductase activity%3B INVOLVED IN: syncytium formation%3B LOCATED IN: cytoplasm%3B EXPRESSED IN: 6 plant structures%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF706 (InterPro:IPR007828)%3B BEST Arabidopsis thaliana protein match is: myo-inositol oxygenase 2 (TAIR:AT2G19800.1)%3B Has 490 Blast hits to 488 proteins in 159 species: Archae - 0%3B Bacteria - 27%3B Metazoa - 132%3B Fungi - 132%3B Plants - 97%3B Viruses - 0%3B Other Eukaryotes - 102 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14976233, PMID:15660207, PMID:19691674, PMID:21394467, PMID:24117492, locus:2012572; locus_type=protein_coding
AT1G14520.4	chr1:004968376	0.0	C/4968376-4968402,4968501-4968661,4968761-4968830,4968917-4969039,4969130-4969242,4969331-4969617,4969691-4969808,4969918-4969954	AT1G14520.4 CDS AT1G14520 ID=AT1G14520.4; Parent=AT1G14520; Name=AT1G14520.4; Note=myo-inositol oxygenase 1; symbol=MIOX1; full_name=myo-inositol oxygenase 1; Dbxref=PMID:14976233, PMID:15660207, PMID:19691674, PMID:21394467, PMID:24117492, locus:2012572; curator_summary=Encodes MIOX1. Belongs to myo-inositol oxygenase gene family.; computational_description=myo-inositol oxygenase 1 (MIOX1)%3B FUNCTIONS IN: inositol oxygenase activity%2C oxidoreductase activity%3B INVOLVED IN: syncytium formation%3B LOCATED IN: cytoplasm%3B EXPRESSED IN: 6 plant structures%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF706 (InterPro:IPR007828)%3B BEST Arabidopsis thaliana protein match is: myo-inositol oxygenase 2 (TAIR:AT2G19800.1)%3B Has 490 Blast hits to 488 proteins in 159 species: Archae - 0%3B Bacteria - 27%3B Metazoa - 132%3B Fungi - 132%3B Plants - 97%3B Viruses - 0%3B Other Eukaryotes - 102 (source: NCBI BLink).; locus_type=protein_coding
AT1G14520.3	chr1:004968384	0.0	C/4968384-4968661,4968761-4968830,4968917-4969039,4969130-4969242,4969331-4969617,4969691-4969808,4969918-4969954	AT1G14520.3 CDS AT1G14520 ID=AT1G14520.3; Parent=AT1G14520; Name=AT1G14520.3; Note=myo-inositol oxygenase 1; symbol=MIOX1; full_name=myo-inositol oxygenase 1; curator_summary=Encodes MIOX1. Belongs to myo-inositol oxygenase gene family.; computational_description=myo-inositol oxygenase 1 (MIOX1)%3B FUNCTIONS IN: inositol oxygenase activity%2C oxidoreductase activity%3B INVOLVED IN: syncytium formation%3B LOCATED IN: cytoplasm%3B EXPRESSED IN: 6 plant structures%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF706 (InterPro:IPR007828)%3B BEST Arabidopsis thaliana protein match is: myo-inositol oxygenase 2 (TAIR:AT2G19800.1)%3B Has 490 Blast hits to 488 proteins in 159 species: Archae - 0%3B Bacteria - 27%3B Metazoa - 132%3B Fungi - 132%3B Plants - 97%3B Viruses - 0%3B Other Eukaryotes - 102 (source: NCBI BLink).; Dbxref=PMID:14976233, PMID:15660207, PMID:19691674, PMID:21394467, PMID:24117492, locus:2012572; locus_type=protein_coding
AT1G14530.2	chr1:004971420	0.0	C/4971420-4971512,4971648-4971725,4971854-4971907,4971998-4972061,4972323-4972368,4972456-4972528,4972702-4972773,4972849-4972941,4973034-4973086,4973166-4973256,4973433-4973597	AT1G14530.2 CDS AT1G14530 ID=AT1G14530.2; Parent=AT1G14530; Name=AT1G14530.2; Note=tobamovirus multiplication-like protein (DUF1084); conf_class=2; symbol=THH1; full_name=TOM THREE HOMOLOG 1; computational_description=TOM THREE HOMOLOG 1 (THH1)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1084 (InterPro:IPR009457)%3B BEST Arabidopsis thaliana protein match is: tobamovirus multiplication protein 3 (TAIR:AT2G02180.1)%3B Has 257 Blast hits to 256 proteins in 45 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 202%3B Viruses - 0%3B Other Eukaryotes - 55 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11836427, PMID:17064408, PMID:17767721, PMID:18671868, PMID:18775970, locus:2012552; locus_type=protein_coding
AT1G14530.1	chr1:004971827	0.0	C/4971827-4971907,4971998-4972061,4972323-4972368,4972456-4972528,4972702-4972773,4972849-4972941,4973034-4973086,4973166-4973256,4973433-4973597	AT1G14530.1 CDS AT1G14530 ID=AT1G14530.1; Parent=AT1G14530; Name=AT1G14530.1; Note=tobamovirus multiplication-like protein (DUF1084); conf_class=1; symbol=THH1; full_name=TOM THREE HOMOLOG 1; computational_description=TOM THREE HOMOLOG 1 (THH1)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1084 (InterPro:IPR009457)%3B BEST Arabidopsis thaliana protein match is: tobamovirus multiplication protein 3 (TAIR:AT2G02180.1)%3B Has 257 Blast hits to 256 proteins in 45 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 202%3B Viruses - 0%3B Other Eukaryotes - 55 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11836427, PMID:17064408, PMID:17767721, PMID:18671868, PMID:18775970, locus:2012552; locus_type=protein_coding
AT1G14540.1	chr1:004974233	0.0	C/4974233-4974624,4974712-4974877,4975099-4975290,4975403-4975600	AT1G14540.1 CDS AT1G14540 ID=AT1G14540.1; Parent=AT1G14540; Name=AT1G14540.1; Note=Peroxidase superfamily protein; conf_class=2; symbol=PER4; full_name=peroxidase 4; computational_description=Peroxidase superfamily protein%3B FUNCTIONS IN: peroxidase activity%2C heme binding%3B INVOLVED IN: response to oxidative stress%2C oxidation reduction%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: leaf apex%2C sepal%2C root%2C stamen%3B EXPRESSED DURING: 4 anthesis%3B CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255)%2C Plant peroxidase (InterPro:IPR000823)%2C Peroxidases heam-ligand binding site (InterPro:IPR019793)%2C Haem peroxidase%2C plant/fungal/bacterial (InterPro:IPR002016)%2C Peroxidase%2C active site (InterPro:IPR019794)%3B BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT1G14550.1)%3B Has 4581 Blast hits to 4555 proteins in 302 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 19%3B Fungi - 179%3B Plants - 4302%3B Viruses - 0%3B Other Eukaryotes - 75 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12473102, PMID:15235117, PMID:15231406, PMID:15347784, PMID:16553894, PMID:21398256, PMID:22394204, PMID:25506770, locus:2012597; locus_type=protein_coding
AT1G14550.1	chr1:004979028	0.0	W/4979028-4979240,4979326-4979517,4979607-4979775,4979933-4980324	AT1G14550.1 CDS AT1G14550 ID=AT1G14550.1; Parent=AT1G14550; Name=AT1G14550.1; Note=Peroxidase superfamily protein; conf_class=4; computational_description=Peroxidase superfamily protein%3B FUNCTIONS IN: peroxidase activity%2C heme binding%3B INVOLVED IN: oxidation reduction%2C response to oxidative stress%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: root%3B CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255)%2C Plant peroxidase (InterPro:IPR000823)%2C Peroxidases heam-ligand binding site (InterPro:IPR019793)%2C Haem peroxidase%2C plant/fungal/bacterial (InterPro:IPR002016)%2C Peroxidase%2C active site (InterPro:IPR019794)%3B BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT1G14540.1)%3B Has 4724 Blast hits to 4696 proteins in 306 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 9%3B Fungi - 328%3B Plants - 4308%3B Viruses - 0%3B Other Eukaryotes - 75 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:12473102, PMID:15235117, PMID:15231406, PMID:16510518, PMID:17061125, PMID:21398256, locus:2012607; locus_type=protein_coding
AT1G14560.1	chr1:004981300	0.0	W/4981300-4981455,4981615-4981700,4981785-4981992,4982105-4982237,4982492-4982676,4982764-4982898,4982990-4983082	AT1G14560.1 CDS AT1G14560 ID=AT1G14560.1; Parent=AT1G14560; Name=AT1G14560.1; Note=Mitochondrial substrate carrier family protein; curator_summary=Encodes a mitochondrial CoA transporter.; conf_class=2; Alias=CoAc1, CoA Carrier 1; computational_description=Mitochondrial substrate carrier family protein%3B FUNCTIONS IN: binding%2C transporter activity%3B INVOLVED IN: transport%2C mitochondrial transport%2C transmembrane transport%3B LOCATED IN: endomembrane system%2C mitochondrial inner membrane%2C membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067)%2C Mitochondrial substrate carrier (InterPro:IPR001993)%2C Mitochondrial substrate/solute carrier (InterPro:IPR018108)%2C Graves disease carrier protein (InterPro:IPR002167)%3B BEST Arabidopsis thaliana protein match is: Mitochondrial substrate carrier family protein (TAIR:AT4G26180.1)%3B Has 25798 Blast hits to 13799 proteins in 460 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 10868%3B Fungi - 7493%3B Plants - 4688%3B Viruses - 0%3B Other Eukaryotes - 2747 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12912986, PMID:15003237, PMID:16607029, PMID:18775970, PMID:18923018, PMID:23590975, locus:2204513; locus_type=protein_coding
AT1G14560.2	chr1:004981300	0.0	W/4981300-4981455,4981615-4981700,4981785-4981992,4982105-4982237,4982492-4982676,4982764-4982922	AT1G14560.2 CDS AT1G14560 ID=AT1G14560.2; Parent=AT1G14560; Name=AT1G14560.2; Note=Mitochondrial substrate carrier family protein; Alias=CoAc1, CoA Carrier 1; curator_summary=Encodes a mitochondrial CoA transporter.; computational_description=Mitochondrial substrate carrier family protein%3B FUNCTIONS IN: binding%2C transporter activity%3B INVOLVED IN: transport%2C mitochondrial transport%2C transmembrane transport%3B LOCATED IN: endomembrane system%2C mitochondrial inner membrane%2C membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067)%2C Mitochondrial substrate carrier (InterPro:IPR001993)%2C Mitochondrial substrate/solute carrier (InterPro:IPR018108)%2C Graves disease carrier protein (InterPro:IPR002167)%3B BEST Arabidopsis thaliana protein match is: Mitochondrial substrate carrier family protein (TAIR:AT4G26180.1)%3B Has 25798 Blast hits to 13799 proteins in 460 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 10868%3B Fungi - 7493%3B Plants - 4688%3B Viruses - 0%3B Other Eukaryotes - 2747 (source: NCBI BLink).; Dbxref=PMID:12912986, PMID:15003237, PMID:16607029, PMID:18775970, PMID:18923018, PMID:23590975, locus:2204513; locus_type=protein_coding
AT1G14560.3	chr1:004981837	0.0	W/4981837-4981992,4982105-4982237,4982492-4982676,4982764-4982898,4982990-4983082	AT1G14560.3 CDS AT1G14560 ID=AT1G14560.3; Parent=AT1G14560; Name=AT1G14560.3; Note=Mitochondrial substrate carrier family protein; Alias=CoAc1, CoA Carrier 1; curator_summary=Encodes a mitochondrial CoA transporter.; computational_description=Mitochondrial substrate carrier family protein%3B FUNCTIONS IN: binding%2C transporter activity%3B INVOLVED IN: transport%2C mitochondrial transport%2C transmembrane transport%3B LOCATED IN: endomembrane system%2C mitochondrial inner membrane%2C membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067)%2C Mitochondrial substrate carrier (InterPro:IPR001993)%2C Mitochondrial substrate/solute carrier (InterPro:IPR018108)%2C Graves disease carrier protein (InterPro:IPR002167)%3B BEST Arabidopsis thaliana protein match is: Mitochondrial substrate carrier family protein (TAIR:AT4G26180.1)%3B Has 25798 Blast hits to 13799 proteins in 460 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 10868%3B Fungi - 7493%3B Plants - 4688%3B Viruses - 0%3B Other Eukaryotes - 2747 (source: NCBI BLink).; Dbxref=PMID:12912986, PMID:15003237, PMID:16607029, PMID:18775970, PMID:18923018, PMID:23590975, locus:2204513; locus_type=protein_coding
AT1G14570.1	chr1:004983770	0.0	W/4983770-4983871,4984426-4984550,4984636-4984746,4985428-4985656,4985738-4985815,4986173-4986241,4986335-4986584,4986664-4986938,4987025-4987192	AT1G14570.1 CDS AT1G14570 ID=AT1G14570.1; Parent=AT1G14570; Name=AT1G14570.1; Note=UBX domain-containing protein; curator_summary=Encodes a nuclear UBX-containing protein that can bridge ubiquitin to AtCDC48A.; conf_class=2; Alias=AtPUX7, PUX7, plant UBX domain-containing protein 7; computational_description=UBX domain-containing protein%3B CONTAINS InterPro DOMAIN/s: UAS (InterPro:IPR006577)%2C Uncharacterised conserved protein UCP037991%2C UAS%2C UBX (InterPro:IPR017346)%2C UBX (InterPro:IPR001012)%2C Ubiquitin interacting motif (InterPro:IPR003903)%2C UBA-like (InterPro:IPR009060)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B BEST Arabidopsis thaliana protein match is: structural constituent of ribosome (TAIR:AT4G14250.2)%3B Has 594 Blast hits to 577 proteins in 178 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 212%3B Fungi - 143%3B Plants - 155%3B Viruses - 0%3B Other Eukaryotes - 80 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, PMID:20736450, PMID:23747397, locus:2204497; locus_type=protein_coding
AT1G14570.2	chr1:004983770	0.0	W/4983770-4983871,4984426-4984550,4984636-4984746,4985428-4985656,4985738-4985815,4986173-4986241,4986335-4986584,4986664-4986938,4987025-4987192	AT1G14570.2 CDS AT1G14570 ID=AT1G14570.2; Parent=AT1G14570; Name=AT1G14570.2; Note=UBX domain-containing protein; curator_summary=Encodes a nuclear UBX-containing protein that can bridge ubiquitin to AtCDC48A.; conf_class=2; Alias=AtPUX7, PUX7, plant UBX domain-containing protein 7; computational_description=UBX domain-containing protein%3B CONTAINS InterPro DOMAIN/s: UAS (InterPro:IPR006577)%2C Uncharacterised conserved protein UCP037991%2C UAS%2C UBX (InterPro:IPR017346)%2C UBX (InterPro:IPR001012)%2C Ubiquitin interacting motif (InterPro:IPR003903)%2C UBA-like (InterPro:IPR009060)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B BEST Arabidopsis thaliana protein match is: structural constituent of ribosome (TAIR:AT4G14250.2)%3B Has 594 Blast hits to 577 proteins in 178 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 212%3B Fungi - 143%3B Plants - 155%3B Viruses - 0%3B Other Eukaryotes - 80 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, PMID:20736450, PMID:23747397, locus:2204497; locus_type=protein_coding
AT1G14570.3	chr1:004983770	0.0	W/4983770-4983871,4984426-4984550,4984636-4984746,4985491-4985656,4985738-4985815,4986173-4986241,4986335-4986584,4986664-4986938,4987025-4987192	AT1G14570.3 CDS AT1G14570 ID=AT1G14570.3; Parent=AT1G14570; Name=AT1G14570.3; Note=UBX domain-containing protein; curator_summary=Encodes a nuclear UBX-containing protein that can bridge ubiquitin to AtCDC48A.; conf_class=3; Alias=AtPUX7, PUX7, plant UBX domain-containing protein 7; computational_description=UBX domain-containing protein%3B CONTAINS InterPro DOMAIN/s: UAS (InterPro:IPR006577)%2C Uncharacterised conserved protein UCP037991%2C UAS%2C UBX (InterPro:IPR017346)%2C UBX (InterPro:IPR001012)%2C Ubiquitin interacting motif (InterPro:IPR003903)%2C UBA-like (InterPro:IPR009060)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B BEST Arabidopsis thaliana protein match is: structural constituent of ribosome (TAIR:AT4G14250.2)%3B Has 594 Blast hits to 577 proteins in 178 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 212%3B Fungi - 143%3B Plants - 155%3B Viruses - 0%3B Other Eukaryotes - 80 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, PMID:20736450, PMID:23747397, locus:2204497; locus_type=protein_coding
AT1G14570.4	chr1:004983770	0.0	W/4983770-4983871,4984426-4984550,4984636-4984746,4985491-4985656,4985738-4985815,4986173-4986241,4986335-4986584,4986664-4986938,4987025-4987192	AT1G14570.4 CDS AT1G14570 ID=AT1G14570.4; Parent=AT1G14570; Name=AT1G14570.4; Note=UBX domain-containing protein; curator_summary=Encodes a nuclear UBX-containing protein that can bridge ubiquitin to AtCDC48A.; conf_class=3; Alias=AtPUX7, PUX7, plant UBX domain-containing protein 7; computational_description=UBX domain-containing protein%3B CONTAINS InterPro DOMAIN/s: UAS (InterPro:IPR006577)%2C Uncharacterised conserved protein UCP037991%2C UAS%2C UBX (InterPro:IPR017346)%2C UBX (InterPro:IPR001012)%2C Ubiquitin interacting motif (InterPro:IPR003903)%2C UBA-like (InterPro:IPR009060)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B BEST Arabidopsis thaliana protein match is: structural constituent of ribosome (TAIR:AT4G14250.2)%3B Has 594 Blast hits to 577 proteins in 178 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 212%3B Fungi - 143%3B Plants - 155%3B Viruses - 0%3B Other Eukaryotes - 80 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, PMID:20736450, PMID:23747397, locus:2204497; locus_type=protein_coding
AT1TE16150	chr1:004987764	0.0	C/4987764-4987868	AT1TE16150 transposable_element AT1TE16150 ID=AT1TE16150; Name=AT1TE16150; Alias=ATENSPM4
AT1TE16155	chr1:004987869	0.0	C/4987869-4988882	AT1TE16155 transposable_element AT1TE16155 ID=AT1TE16155; Name=AT1TE16155; Alias=ATREP15
AT1G14580.3	chr1:004990028	0.0	W/4990028-4990256,4990484-4990880,4991623-4992442	AT1G14580.3 CDS AT1G14580 ID=AT1G14580.3; Parent=AT1G14580; Name=AT1G14580.3; Note=C2H2-like zinc finger protein; computational_description=C2H2-like zinc finger protein%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%2C zinc ion binding%2C nucleic acid binding%3B LOCATED IN: intracellular%3B EXPRESSED IN: 7 plant structures%3B EXPRESSED DURING: LP.04 four leaves visible%2C LP.10 ten leaves visible%2C LP.02 two leaves visible%2C 4 leaf senescence stage%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C C2H2-like (InterPro:IPR015880)%2C Zinc finger%2C C2H2-type (InterPro:IPR007087)%3B BEST Arabidopsis thaliana protein match is: indeterminate(ID)-domain 4 (TAIR:AT2G02080.1)%3B Has 50611 Blast hits to 19416 proteins in 277 species: Archae - 0%3B Bacteria - 3%3B Metazoa - 47960%3B Fungi - 322%3B Plants - 829%3B Viruses - 2%3B Other Eukaryotes - 1495 (source: NCBI BLink).; Dbxref=PMID:11118137, PMID:14576160, PMID:15236668, PMID:16813575, PMID:16784536, PMID:16934950, PMID:24377444, locus:2204503; locus_type=protein_coding
AT1G14580.1	chr1:004990070	0.0	W/4990070-4990256,4990484-4990880,4991623-4992442	AT1G14580.1 CDS AT1G14580 ID=AT1G14580.1; Parent=AT1G14580; Name=AT1G14580.1; Note=C2H2-like zinc finger protein; conf_class=2; computational_description=C2H2-like zinc finger protein%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%2C zinc ion binding%2C nucleic acid binding%3B LOCATED IN: intracellular%3B EXPRESSED IN: 7 plant structures%3B EXPRESSED DURING: LP.04 four leaves visible%2C LP.10 ten leaves visible%2C LP.02 two leaves visible%2C 4 leaf senescence stage%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C C2H2-like (InterPro:IPR015880)%2C Zinc finger%2C C2H2-type (InterPro:IPR007087)%3B BEST Arabidopsis thaliana protein match is: indeterminate(ID)-domain 4 (TAIR:AT2G02080.1)%3B Has 50611 Blast hits to 19416 proteins in 277 species: Archae - 0%3B Bacteria - 3%3B Metazoa - 47960%3B Fungi - 322%3B Plants - 829%3B Viruses - 2%3B Other Eukaryotes - 1495 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:14576160, PMID:15236668, PMID:16813575, PMID:16784536, PMID:16934950, PMID:24377444, locus:2204503; locus_type=protein_coding
AT1G14580.2	chr1:004990070	0.0	W/4990070-4990256,4990484-4990880,4991623-4992442	AT1G14580.2 CDS AT1G14580 ID=AT1G14580.2; Parent=AT1G14580; Name=AT1G14580.2; Note=C2H2-like zinc finger protein; conf_class=3; computational_description=C2H2-like zinc finger protein%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%2C zinc ion binding%2C nucleic acid binding%3B LOCATED IN: intracellular%3B EXPRESSED IN: 7 plant structures%3B EXPRESSED DURING: LP.04 four leaves visible%2C LP.10 ten leaves visible%2C LP.02 two leaves visible%2C 4 leaf senescence stage%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C C2H2-like (InterPro:IPR015880)%2C Zinc finger%2C C2H2-type (InterPro:IPR007087)%3B BEST Arabidopsis thaliana protein match is: indeterminate(ID)-domain 4 (TAIR:AT2G02080.1)%3B Has 50611 Blast hits to 19416 proteins in 277 species: Archae - 0%3B Bacteria - 3%3B Metazoa - 47960%3B Fungi - 322%3B Plants - 829%3B Viruses - 2%3B Other Eukaryotes - 1495 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:14576160, PMID:15236668, PMID:16813575, PMID:16784536, PMID:16934950, PMID:24377444, locus:2204503; locus_type=protein_coding
AT1G14580.4	chr1:004991103	0.0	W/4991103-4991293,4991623-4992442	AT1G14580.4 CDS AT1G14580 ID=AT1G14580.4; Parent=AT1G14580; Name=AT1G14580.4; Note=C2H2-like zinc finger protein; computational_description=C2H2-like zinc finger protein%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%2C zinc ion binding%2C nucleic acid binding%3B LOCATED IN: intracellular%3B EXPRESSED IN: 7 plant structures%3B EXPRESSED DURING: LP.04 four leaves visible%2C LP.10 ten leaves visible%2C LP.02 two leaves visible%2C 4 leaf senescence stage%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C C2H2-like (InterPro:IPR015880)%2C Zinc finger%2C C2H2-type (InterPro:IPR007087)%3B BEST Arabidopsis thaliana protein match is: indeterminate(ID)-domain 4 (TAIR:AT2G02080.1)%3B Has 50611 Blast hits to 19416 proteins in 277 species: Archae - 0%3B Bacteria - 3%3B Metazoa - 47960%3B Fungi - 322%3B Plants - 829%3B Viruses - 2%3B Other Eukaryotes - 1495 (source: NCBI BLink).; Dbxref=PMID:11118137, PMID:14576160, PMID:15236668, PMID:16813575, PMID:16784536, PMID:16934950, PMID:24377444, locus:2204503; locus_type=protein_coding
AT1G05097.1	chr1:004994639	0.0	C/4994639-4994874	AT1G05097.1 lnc_RNA AT1G05097 ID=AT1G05097.1; Parent=AT1G05097; Name=AT1G05097.1; locus_type=long_noncoding_rna
AT1G05103.1	chr1:004996758	0.0	W/4996758-4997068	AT1G05103.1 lnc_RNA AT1G05103 ID=AT1G05103.1; Parent=AT1G05103; Name=AT1G05103.1; locus_type=long_noncoding_rna
AT1G05107.1	chr1:004996867	0.0	C/4996867-4997187	AT1G05107.1 lnc_RNA AT1G05107 ID=AT1G05107.1; Parent=AT1G05107; Name=AT1G05107.1; locus_type=long_noncoding_rna
AT1G14590.1	chr1:004998957	0.0	C/4998957-4999035,4999125-4999606,4999711-5000076,5000384-5000617	AT1G14590.1 CDS AT1G14590 ID=AT1G14590.1; Parent=AT1G14590; Name=AT1G14590.1; Note=Nucleotide-diphospho-sugar transferase family protein; conf_class=2; computational_description=Nucleotide-diphospho-sugar transferase family protein%3B CONTAINS InterPro DOMAIN/s: Nucleotide-diphospho-sugar transferase%2C predicted (InterPro:IPR005069)%3B BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferase family protein (TAIR:AT2G02061.1)%3B Has 314 Blast hits to 308 proteins in 24 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 294%3B Viruses - 0%3B Other Eukaryotes - 20 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11719511, PMID:14576160, PMID:17401635, PMID:20736450, locus:2204508; locus_type=protein_coding
AT1G14600.1	chr1:005001185	0.0	C/5001185-5001442,5001998-5002121,5002287-5002413,5002790-5002829,5002980-5003056,5003229-5003370	AT1G14600.1 CDS AT1G14600 ID=AT1G14600.1; Parent=AT1G14600; Name=AT1G14600.1; Note=Homeodomain-like superfamily protein; conf_class=2; computational_description=Homeodomain-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: Myb%2C DNA-binding (InterPro:IPR014778)%2C Homeodomain-like (InterPro:IPR009057)%2C Homeodomain-related (InterPro:IPR012287)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%2C Myb-like DNA-binding domain%2C SHAQKYF class (InterPro:IPR006447)%3B BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G02060.1)%3B Has 1612 Blast hits to 1608 proteins in 56 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1598%3B Viruses - 0%3B Other Eukaryotes - 14 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:15208423, locus:2204518; locus_type=protein_coding
AT1G14610.1	chr1:005008502	0.0	C/5008502-5008676,5008779-5008927,5009012-5009111,5009236-5009342,5009427-5009927,5010012-5010263,5010371-5010773,5010917-5011116,5011251-5011421,5011512-5011814,5011889-5011946,5012108-5012187,5012352-5012435,5012523-5012600,5012732-5012815,5012896-5012961,5013134-5013206,5013288-5013466,5013593-5013655,5014167-5014232,5014352-5014486	AT1G14610.1 CDS AT1G14610 ID=AT1G14610.1; Parent=AT1G14610; Name=AT1G14610.1; Note=valyl-tRNA synthetase / valine-tRNA ligase (VALRS); curator_summary=Required for proper proliferation of basal cells.; conf_class=3; symbol=TWN2; Alias=VALRS, VALYL TRNA SYNTHETASE; full_name=TWIN 2; computational_description=TWIN 2 (TWN2)%3B FUNCTIONS IN: valine-tRNA ligase activity%2C aminoacyl-tRNA ligase activity%2C nucleotide binding%2C ATP binding%3B INVOLVED IN: tRNA aminoacylation for protein translation%2C embryo development ending in seed dormancy%3B LOCATED IN: mitochondrion%2C chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Valyl-tRNA synthetase%2C class Ia (InterPro:IPR002303)%2C Aminoacyl-tRNA synthetase%2C class I%2C conserved site (InterPro:IPR001412)%2C Aminoacyl-tRNA synthetase%2C class 1a%2C anticodon-binding (InterPro:IPR009080)%2C Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729)%2C Valyl/Leucyl/Isoleucyl-tRNA synthetase%2C class Ia%2C editing (InterPro:IPR009008)%2C Valyl/Leucyl/Isoleucyl-tRNA synthetase%2C class I%2C anticodon-binding (InterPro:IPR013155)%2C Aminoacyl-tRNA synthetase%2C class Ia (InterPro:IPR002300)%2C Valyl-tRNA synthetase%2C class Ia%2C N-terminal (InterPro:IPR019754)%3B BEST Arabidopsis thaliana protein match is: ATP binding%3Bvaline-tRNA ligases%3Baminoacyl-tRNA ligases%3Bnucleotide binding%3BATP binding%3Baminoacyl-tRNA ligases (TAIR:AT5G16715.1)%3B Has 39194 Blast hits to 36732 proteins in 3122 species: Archae - 839%3B Bacteria - 19755%3B Metazoa - 1534%3B Fungi - 892%3B Plants - 369%3B Viruses - 3%3B Other Eukaryotes - 15802 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10583378, PMID:9207094, PMID:12787244, PMID:14576160, PMID:16251277, PMID:16297076, PMID:16824183, PMID:17786563, PMID:18319396, PMID:18315867, PMID:18775970, locus:2204543; locus_type=protein_coding
AT1G14620.1	chr1:005014948	0.0	C/5014948-5015091,5015177-5015302,5015397-5015526,5015622-5015696,5016046-5016111,5016341-5016501	AT1G14620.1 CDS AT1G14620 ID=AT1G14620.1; Parent=AT1G14620; Name=AT1G14620.1; Note=decoy; conf_class=2; symbol=DECOY; full_name=DECOY; computational_description=DECOY (DECOY)%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L46 (InterPro:IPR021757)%3B Has 274 Blast hits to 274 proteins in 142 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 83%3B Fungi - 120%3B Plants - 46%3B Viruses - 0%3B Other Eukaryotes - 23 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9207094, PMID:17329565, PMID:18315867, PMID:21908688, PMID:23429259, locus:2204533; locus_type=protein_coding
AT1G14620.2	chr1:005014985	0.0	C/5014985-5015089,5015177-5015302,5015397-5015526,5015622-5015696,5016046-5016111,5016341-5016501	AT1G14620.2 CDS AT1G14620 ID=AT1G14620.2; Parent=AT1G14620; Name=AT1G14620.2; Note=decoy; conf_class=3; symbol=DECOY; full_name=DECOY; computational_description=DECOY (DECOY)%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L46 (InterPro:IPR021757)%3B Has 274 Blast hits to 274 proteins in 142 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 83%3B Fungi - 120%3B Plants - 46%3B Viruses - 0%3B Other Eukaryotes - 23 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9207094, PMID:17329565, PMID:18315867, PMID:21908688, PMID:23429259, locus:2204533; locus_type=protein_coding
AT1G14630.1	chr1:005019995	0.0	W/5019995-5020073,5020327-5020511,5020620-5020671,5020832-5020924,5021174-5021445	AT1G14630.1 CDS AT1G14630 ID=AT1G14630.1; Parent=AT1G14630; Name=AT1G14630.1; Note=XRI1-like protein; conf_class=2; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01990.1)%3B Has 125 Blast hits to 123 proteins in 14 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 125%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:20032078, PMID:20736450, locus:2204538; locus_type=protein_coding
AT1G14630.2	chr1:005019995	0.0	W/5019995-5020073,5020327-5020511,5020620-5020671,5020832-5021016	AT1G14630.2 CDS AT1G14630 ID=AT1G14630.2; Parent=AT1G14630; Name=AT1G14630.2; Note=XRI1-like protein; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01990.1)%3B Has 125 Blast hits to 123 proteins in 14 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 125%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=PMID:20032078, PMID:20736450, locus:2204538; locus_type=protein_coding
AT1TE16260	chr1:005022763	0.0	W/5022763-5023295	AT1TE16260 transposable_element AT1TE16260 ID=AT1TE16260; Name=AT1TE16260; Alias=HELITRONY3
AT1G14640.1	chr1:005023656	0.0	W/5023656-5025716,5025809-5025955	AT1G14640.1 CDS AT1G14640 ID=AT1G14640.1; Parent=AT1G14640; Name=AT1G14640.1; Note=SWAP (Suppressor-of-White-APricot)/surp domain-containing protein; conf_class=2; computational_description=SWAP (Suppressor-of-White-APricot)/surp domain-containing protein%3B FUNCTIONS IN: RNA binding%3B INVOLVED IN: RNA processing%3B EXPRESSED IN: male gametophyte%2C flower%2C seed%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%2C E expanded cotyledon stage%3B CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061)%2C Pre-mRNA splicing factor PRP21 like protein (InterPro:IPR022030)%3B BEST Arabidopsis thaliana protein match is: SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (TAIR:AT1G14650.2)%3B Has 30145 Blast hits to 19260 proteins in 1053 species: Archae - 38%3B Bacteria - 3368%3B Metazoa - 12891%3B Fungi - 4189%3B Plants - 5021%3B Viruses - 726%3B Other Eukaryotes - 3912 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15987817, PMID:18775970, locus:2204523; locus_type=protein_coding
AT1G14640.2	chr1:005023656	0.0	W/5023656-5025716,5025809-5025955	AT1G14640.2 CDS AT1G14640 ID=AT1G14640.2; Parent=AT1G14640; Name=AT1G14640.2; Note=SWAP (Suppressor-of-White-APricot)/surp domain-containing protein; Dbxref=PMID:15987817, PMID:18775970, locus:2204523; computational_description=SWAP (Suppressor-of-White-APricot)/surp domain-containing protein%3B FUNCTIONS IN: RNA binding%3B INVOLVED IN: RNA processing%3B EXPRESSED IN: male gametophyte%2C flower%2C seed%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%2C E expanded cotyledon stage%3B CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061)%2C Pre-mRNA splicing factor PRP21 like protein (InterPro:IPR022030)%3B BEST Arabidopsis thaliana protein match is: SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (TAIR:AT1G14650.2)%3B Has 30145 Blast hits to 19260 proteins in 1053 species: Archae - 38%3B Bacteria - 3368%3B Metazoa - 12891%3B Fungi - 4189%3B Plants - 5021%3B Viruses - 726%3B Other Eukaryotes - 3912 (source: NCBI BLink).; locus_type=protein_coding
AT1TE16265	chr1:005025647	0.0	W/5025647-5025808	AT1TE16265 transposable_element AT1TE16265 ID=AT1TE16265; Name=AT1TE16265; Alias=ATIS112A
AT1G14642.1	chr1:005026364	0.0	W/5026364-5026405,5026496-5026558	AT1G14642.1 CDS AT1G14642 ID=AT1G14642.1; Parent=AT1G14642; Name=AT1G14642.1; Note=hypothetical protein; conf_class=4; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).; conf_rating=***; Dbxref=locus:5019474611; locus_type=protein_coding
AT1G14650.1	chr1:005028077	0.0	W/5028077-5030176,5030263-5030520	AT1G14650.1 CDS AT1G14650 ID=AT1G14650.1; Parent=AT1G14650; Name=AT1G14650.1; Note=SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; conf_class=2; computational_description=SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein%3B FUNCTIONS IN: RNA binding%3B INVOLVED IN: RNA processing%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061)%2C Ubiquitin (InterPro:IPR000626)%2C Pre-mRNA splicing factor PRP21 like protein (InterPro:IPR022030)%2C Ubiquitin supergroup (InterPro:IPR019955)%3B BEST Arabidopsis thaliana protein match is: SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (TAIR:AT1G14640.1)%3B Has 37228 Blast hits to 22919 proteins in 1210 species: Archae - 39%3B Bacteria - 4240%3B Metazoa - 16399%3B Fungi - 5145%3B Plants - 6055%3B Viruses - 891%3B Other Eukaryotes - 4459 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15452276, PMID:15987817, PMID:18775970, PMID:23877244, locus:2204528; locus_type=protein_coding
AT1G14650.2	chr1:005028077	0.0	W/5028077-5030176,5030263-5030520	AT1G14650.2 CDS AT1G14650 ID=AT1G14650.2; Parent=AT1G14650; Name=AT1G14650.2; Note=SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; conf_class=1; computational_description=SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein%3B FUNCTIONS IN: RNA binding%3B INVOLVED IN: RNA processing%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061)%2C Ubiquitin (InterPro:IPR000626)%2C Pre-mRNA splicing factor PRP21 like protein (InterPro:IPR022030)%2C Ubiquitin supergroup (InterPro:IPR019955)%3B BEST Arabidopsis thaliana protein match is: SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (TAIR:AT1G14640.1)%3B Has 37228 Blast hits to 22919 proteins in 1210 species: Archae - 39%3B Bacteria - 4240%3B Metazoa - 16399%3B Fungi - 5145%3B Plants - 6055%3B Viruses - 891%3B Other Eukaryotes - 4459 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15452276, PMID:15987817, PMID:18775970, PMID:23877244, locus:2204528; locus_type=protein_coding
AT1G14650.3	chr1:005028077	0.0	W/5028077-5030176,5030263-5030520	AT1G14650.3 CDS AT1G14650 ID=AT1G14650.3; Parent=AT1G14650; Name=AT1G14650.3; Note=SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; Dbxref=PMID:15452276, PMID:15987817, PMID:18775970, PMID:23877244, locus:2204528; computational_description=SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein%3B FUNCTIONS IN: RNA binding%3B INVOLVED IN: RNA processing%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061)%2C Ubiquitin (InterPro:IPR000626)%2C Pre-mRNA splicing factor PRP21 like protein (InterPro:IPR022030)%2C Ubiquitin supergroup (InterPro:IPR019955)%3B BEST Arabidopsis thaliana protein match is: SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (TAIR:AT1G14640.1)%3B Has 37228 Blast hits to 22919 proteins in 1210 species: Archae - 39%3B Bacteria - 4240%3B Metazoa - 16399%3B Fungi - 5145%3B Plants - 6055%3B Viruses - 891%3B Other Eukaryotes - 4459 (source: NCBI BLink).; locus_type=protein_coding
AT1TE16275	chr1:005030107	0.0	W/5030107-5030262	AT1TE16275 transposable_element AT1TE16275 ID=AT1TE16275; Name=AT1TE16275; Alias=ATIS112A
AT1G14660.1	chr1:005032163	0.0	C/5032163-5032297,5032379-5032510,5032595-5032692,5032833-5033135,5033226-5033454,5033768-5033875,5033964-5034008,5034145-5034329,5034532-5034584,5034717-5034761,5034856-5034921,5034998-5035050,5035136-5035253,5035333-5035434,5035517-5035674,5035760-5035837,5035913-5036004,5036073-5036123,5036220-5036439	AT1G14660.1 CDS AT1G14660 ID=AT1G14660.1; Parent=AT1G14660; Name=AT1G14660.1; Note=Na+/H+ exchanger 8; curator_summary=member of putative Na+/H+ antiporter (AtNHX) family. Functions as a plasma membrane Li+/H+ antiporter. Involved in Li+ efflux and detoxification.; conf_class=1; symbol=NHX8; Alias=ATNHX8, Na+/H+ exchanger 8; full_name=Na+/H+ exchanger 8; computational_description=Na+/H+ exchanger 8 (NHX8)%3B CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger%2C conserved region (InterPro:IPR018422)%2C Cation/H+ exchanger (InterPro:IPR006153)%2C Na+/H+ exchanger%2C isoforms 7/8%2C conserved region (InterPro:IPR018418)%3B BEST Arabidopsis thaliana protein match is: sodium proton exchanger%2C putative (NHX7) (SOS1) (TAIR:AT2G01980.1)%3B Has 7911 Blast hits to 7887 proteins in 1969 species: Archae - 132%3B Bacteria - 5569%3B Metazoa - 988%3B Fungi - 148%3B Plants - 408%3B Viruses - 0%3B Other Eukaryotes - 666 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11500563, PMID:15341627, PMID:15489341, PMID:16460505, PMID:16513813, PMID:17270011, PMID:17882512, PMID:23345415, locus:2006762; locus_type=protein_coding
AT1G14660.2	chr1:005032163	0.0	C/5032163-5032297,5032379-5032510,5032595-5032692,5032833-5033135,5033226-5033454,5033768-5033875,5033964-5034028,5034145-5034181,5034271-5034329,5034532-5034584,5034717-5034761,5034856-5034921,5034998-5035050,5035136-5035253,5035333-5035434,5035517-5035674,5035760-5035837,5035913-5036004,5036073-5036123,5036220-5036439	AT1G14660.2 CDS AT1G14660 ID=AT1G14660.2; Parent=AT1G14660; Name=AT1G14660.2; Note=Na+/H+ exchanger 8; curator_summary=member of putative Na+/H+ antiporter (AtNHX) family. Functions as a plasma membrane Li+/H+ antiporter. Involved in Li+ efflux and detoxification.; conf_class=6; symbol=NHX8; Alias=ATNHX8, Na+/H+ exchanger 8; full_name=Na+/H+ exchanger 8; computational_description=Na+/H+ exchanger 8 (NHX8)%3B CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger%2C conserved region (InterPro:IPR018422)%2C Cation/H+ exchanger (InterPro:IPR006153)%2C Na+/H+ exchanger%2C isoforms 7/8%2C conserved region (InterPro:IPR018418)%3B BEST Arabidopsis thaliana protein match is: sodium proton exchanger%2C putative (NHX7) (SOS1) (TAIR:AT2G01980.1)%3B Has 7911 Blast hits to 7887 proteins in 1969 species: Archae - 132%3B Bacteria - 5569%3B Metazoa - 988%3B Fungi - 148%3B Plants - 408%3B Viruses - 0%3B Other Eukaryotes - 666 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:11500563, PMID:15341627, PMID:15489341, PMID:16460505, PMID:16513813, PMID:17270011, PMID:17882512, PMID:23345415, locus:2006762; locus_type=protein_coding
AT1G05113.1	chr1:005036521	0.0	W/5036521-5036720	AT1G05113.1 lnc_RNA AT1G05113 ID=AT1G05113.1; Parent=AT1G05113; Name=AT1G05113.1; locus_type=long_noncoding_rna
AT1G14670.1	chr1:005037669	0.0	W/5037669-5037820,5038100-5038140,5038249-5038834,5038911-5039048,5039159-5039315,5039411-5039895,5039980-5040199	AT1G14670.1 CDS AT1G14670 ID=AT1G14670.1; Parent=AT1G14670; Name=AT1G14670.1; Note=Endomembrane protein 70 protein family; conf_class=2; computational_description=Endomembrane protein 70 protein family%3B INVOLVED IN: transport%3B LOCATED IN: integral to membrane%2C Golgi apparatus%2C membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240)%3B BEST Arabidopsis thaliana protein match is: Endomembrane protein 70 protein family (TAIR:AT2G01970.1)%3B Has 1574 Blast hits to 1525 proteins in 319 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 610%3B Fungi - 249%3B Plants - 451%3B Viruses - 0%3B Other Eukaryotes - 262 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15295017, PMID:16618929, PMID:17432890, PMID:18650403, PMID:22570441, locus:2006872; locus_type=protein_coding
AT1G14680.1	chr1:005040861	0.0	W/5040861-5041733	AT1G14680.1 CDS AT1G14680 ID=AT1G14680.1; Parent=AT1G14680; Name=AT1G14680.1; Note=early endosome antigen; conf_class=1; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G09060.1)%3B Has 8132 Blast hits to 6366 proteins in 685 species: Archae - 171%3B Bacteria - 671%3B Metazoa - 4046%3B Fungi - 445%3B Plants - 318%3B Viruses - 23%3B Other Eukaryotes - 2458 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15923328, locus:2006722; locus_type=protein_coding
AT1G14685.1	chr1:005043086	0.0	W/5043086-5043925	AT1G14685.1 CDS AT1G14685 ID=AT1G14685.1; Parent=AT1G14685; Name=AT1G14685.1; Note=basic pentacysteine 2; curator_summary=Encodes a member of the BASIC PENTACYSTEINE (BPC) proteins. BPC proteins are plant-specific transcription factors present throughout land plants. BPC transcription factor family is integral for a wide range of processes that support normal growth and development.; conf_class=2; symbol=BPC2; Alias=ATBPC2, BASIC PENTACYSTEINE 2, BBR/BPC2; full_name=basic pentacysteine 2; computational_description=basic pentacysteine 2 (BPC2)%3B CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409)%3B BEST Arabidopsis thaliana protein match is: basic pentacysteine1 (TAIR:AT2G01930.2)%3B Has 236 Blast hits to 236 proteins in 26 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2%3B Fungi - 0%3B Plants - 218%3B Viruses - 0%3B Other Eukaryotes - 16 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12795701, PMID:14731261, PMID:17411438, PMID:18775970, PMID:21108821, PMID:21435046, PMID:22253603, PMID:24482368, locus:2823945; locus_type=protein_coding
AT1G14685.2	chr1:005043086	0.0	W/5043086-5043925	AT1G14685.2 CDS AT1G14685 ID=AT1G14685.2; Parent=AT1G14685; Name=AT1G14685.2; Note=basic pentacysteine 2; curator_summary=Encodes a member of the BASIC PENTACYSTEINE (BPC) proteins. BPC proteins are plant-specific transcription factors present throughout land plants. BPC transcription factor family is integral for a wide range of processes that support normal growth and development.; conf_class=2; symbol=BPC2; Alias=ATBPC2, BASIC PENTACYSTEINE 2, BBR/BPC2; full_name=basic pentacysteine 2; computational_description=basic pentacysteine 2 (BPC2)%3B CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409)%3B BEST Arabidopsis thaliana protein match is: basic pentacysteine1 (TAIR:AT2G01930.2)%3B Has 236 Blast hits to 236 proteins in 26 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2%3B Fungi - 0%3B Plants - 218%3B Viruses - 0%3B Other Eukaryotes - 16 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12795701, PMID:14731261, PMID:17411438, PMID:18775970, PMID:21108821, PMID:21435046, PMID:22253603, PMID:24482368, locus:2823945; locus_type=protein_coding
AT1G14685.3	chr1:005043086	0.0	W/5043086-5043925	AT1G14685.3 CDS AT1G14685 ID=AT1G14685.3; Parent=AT1G14685; Name=AT1G14685.3; Note=basic pentacysteine 2; curator_summary=Encodes a member of the BASIC PENTACYSTEINE (BPC) proteins. BPC proteins are plant-specific transcription factors present throughout land plants. BPC transcription factor family is integral for a wide range of processes that support normal growth and development.; conf_class=1; symbol=BPC2; Alias=ATBPC2, BASIC PENTACYSTEINE 2, BBR/BPC2; full_name=basic pentacysteine 2; computational_description=basic pentacysteine 2 (BPC2)%3B CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409)%3B BEST Arabidopsis thaliana protein match is: basic pentacysteine1 (TAIR:AT2G01930.2)%3B Has 236 Blast hits to 236 proteins in 26 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2%3B Fungi - 0%3B Plants - 218%3B Viruses - 0%3B Other Eukaryotes - 16 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12795701, PMID:14731261, PMID:17411438, PMID:18775970, PMID:21108821, PMID:21435046, PMID:22253603, PMID:24482368, locus:2823945; locus_type=protein_coding
AT1G14685.4	chr1:005043086	0.0	W/5043086-5043925	AT1G14685.4 CDS AT1G14685 ID=AT1G14685.4; Parent=AT1G14685; Name=AT1G14685.4; Note=basic pentacysteine 2; symbol=BPC2; Alias=ATBPC2, BASIC PENTACYSTEINE 2, BBR/BPC2; full_name=basic pentacysteine 2; Dbxref=PMID:12795701, PMID:14731261, PMID:17411438, PMID:18775970, PMID:21108821, PMID:21435046, PMID:22253603, PMID:24482368, locus:2823945; curator_summary=Encodes a member of the BASIC PENTACYSTEINE (BPC) proteins. BPC proteins are plant-specific transcription factors present throughout land plants. BPC transcription factor family is integral for a wide range of processes that support normal growth and development.; computational_description=basic pentacysteine 2 (BPC2)%3B CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409)%3B BEST Arabidopsis thaliana protein match is: basic pentacysteine1 (TAIR:AT2G01930.2)%3B Has 236 Blast hits to 236 proteins in 26 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2%3B Fungi - 0%3B Plants - 218%3B Viruses - 0%3B Other Eukaryotes - 16 (source: NCBI BLink).; locus_type=protein_coding
AT1TE16320	chr1:005044510	0.0	C/5044510-5044605	AT1TE16320 transposable_element AT1TE16320 ID=AT1TE16320; Name=AT1TE16320; Alias=ATREP3
AT1TE16325	chr1:005044606	0.0	W/5044606-5045303	AT1TE16325 transposable_element AT1TE16325 ID=AT1TE16325; Name=AT1TE16325; Alias=TNAT1A
AT1TE16330	chr1:005045304	0.0	C/5045304-5045665	AT1TE16330 transposable_element AT1TE16330 ID=AT1TE16330; Name=AT1TE16330; Alias=ATREP11A
AT1G14686.1	chr1:005045781	0.0	C/5045781-5046800	AT1G14686.1 CDS AT1G14686 ID=AT1G14686.1; Parent=AT1G14686; Name=AT1G14686.1; Note=ENTH/ANTH/VHS superfamily protein; conf_class=8; computational_description=ENTH/ANTH/VHS superfamily protein%3B FUNCTIONS IN: phospholipid binding%2C clathrin binding%2C binding%2C phosphatidylinositol binding%3B INVOLVED IN: clathrin coat assembly%3B LOCATED IN: clathrin coat%3B CONTAINS InterPro DOMAIN/s: Epsin-like%2C N-terminal (InterPro:IPR013809)%2C Clathrin adaptor%2C phosphoinositide-binding%2C GAT-like (InterPro:IPR014712)%2C ANTH (InterPro:IPR011417)%2C ENTH/VHS (InterPro:IPR008942)%3B BEST Arabidopsis thaliana protein match is: ENTH/VHS/GAT family protein (TAIR:AT2G01920.1)%3B Has 354 Blast hits to 311 proteins in 17 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 2%3B Plants - 352%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*; Dbxref=locus:504956332; locus_type=protein_coding
AT1G14687.1	chr1:005048046	0.0	W/5048046-5048552	AT1G14687.1 CDS AT1G14687 ID=AT1G14687.1; Parent=AT1G14687; Name=AT1G14687.1; Note=homeobox protein 32; conf_class=1; symbol=HB32; Alias=AtHB32, homeobox protein 32, ZHD14, ZINC FINGER HOMEODOMAIN 14; full_name=homeobox protein 32; computational_description=homeobox protein 32 (HB32)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%3B EXPRESSED IN: 8 plant structures%3B EXPRESSED DURING: F mature embryo stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: Homeobox domain%2C ZF-HD class (InterPro:IPR006455)%2C ZF-HD homeobox protein%2C Cys/His-rich dimerisation domain (InterPro:IPR006456)%2C Homeodomain-related (InterPro:IPR012287)%3B BEST Arabidopsis thaliana protein match is: homeobox protein 26 (TAIR:AT5G60480.1)%3B Has 531 Blast hits to 458 proteins in 32 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16428600, PMID:17056621, PMID:21059647, locus:505006123; locus_type=protein_coding
AT1G14688.1	chr1:005049654	0.0	C/5049654-5049834,5049920-5050038,5050160-5050213,5050761-5050879,5050944-5050983	AT1G14688.1 CDS AT1G14688 ID=AT1G14688.1; Parent=AT1G14688; Name=AT1G14688.1; Note=E3 ubiquitin ligase; conf_class=6; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: E3 Ubiquitin ligase (InterPro:IPR022170)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=**; Dbxref=locus:4515102534; locus_type=protein_coding
AT1G05117.1	chr1:005051298	0.0	W/5051298-5051561	AT1G05117.1 lnc_RNA AT1G05117 ID=AT1G05117.1; Parent=AT1G05117; Name=AT1G05117.1; locus_type=long_noncoding_rna
AT1G14690.1	chr1:005052090	0.0	C/5052090-5052428,5052518-5052592,5052667-5052740,5052819-5052906,5052976-5053127,5053216-5053375,5053467-5053622,5053710-5053925,5054025-5054294,5054386-5054589,5054859-5054936	AT1G14690.1 CDS AT1G14690 ID=AT1G14690.1; Parent=AT1G14690; Name=AT1G14690.1; Note=microtubule-associated protein 65-7; conf_class=2; symbol=MAP65-7; full_name=microtubule-associated protein 65-7; computational_description=microtubule-associated protein 65-7 (MAP65-7)%3B CONTAINS InterPro DOMAIN/s: Microtubule-associated protein%2C MAP65/ASE1-type (InterPro:IPR007145)%3B BEST Arabidopsis thaliana protein match is: Microtubule associated protein (MAP65/ASE1) family protein (TAIR:AT2G01910.1)%3B Has 3902 Blast hits to 3379 proteins in 390 species: Archae - 69%3B Bacteria - 268%3B Metazoa - 1928%3B Fungi - 367%3B Plants - 438%3B Viruses - 6%3B Other Eukaryotes - 826 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16449317, PMID:19060108, locus:2006737; locus_type=protein_coding
AT1G14690.2	chr1:005052090	0.0	C/5052090-5052428,5052518-5052592,5052667-5052740,5052819-5052906,5052976-5053127,5053216-5053375,5053467-5053622,5053710-5053925,5054025-5054294,5054386-5054589,5054859-5054936	AT1G14690.2 CDS AT1G14690 ID=AT1G14690.2; Parent=AT1G14690; Name=AT1G14690.2; Note=microtubule-associated protein 65-7; conf_class=2; symbol=MAP65-7; full_name=microtubule-associated protein 65-7; computational_description=microtubule-associated protein 65-7 (MAP65-7)%3B CONTAINS InterPro DOMAIN/s: Microtubule-associated protein%2C MAP65/ASE1-type (InterPro:IPR007145)%3B BEST Arabidopsis thaliana protein match is: Microtubule associated protein (MAP65/ASE1) family protein (TAIR:AT2G01910.1)%3B Has 3902 Blast hits to 3379 proteins in 390 species: Archae - 69%3B Bacteria - 268%3B Metazoa - 1928%3B Fungi - 367%3B Plants - 438%3B Viruses - 6%3B Other Eukaryotes - 826 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16449317, PMID:19060108, locus:2006737; locus_type=protein_coding
AT1TE16370	chr1:005058197	0.0	C/5058197-5058727	AT1TE16370 transposable_element AT1TE16370 ID=AT1TE16370; Name=AT1TE16370; Alias=HELITRON4
AT1G14700.1	chr1:005058680	0.0	W/5058680-5058967,5059473-5059629,5059726-5059833,5059930-5060057,5060361-5060489,5060584-5060651,5060766-5060988	AT1G14700.1 CDS AT1G14700 ID=AT1G14700.1; Parent=AT1G14700; Name=AT1G14700.1; Note=purple acid phosphatase 3; conf_class=2; symbol=PAP3; Alias=ATPAP3; full_name=purple acid phosphatase 3; computational_description=purple acid phosphatase 3 (PAP3)%3B FUNCTIONS IN: protein serine/threonine phosphatase activity%2C acid phosphatase activity%3B LOCATED IN: vacuole%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843)%3B BEST Arabidopsis thaliana protein match is: purple acid phosphatase 8 (TAIR:AT2G01890.1)%3B Has 1143 Blast hits to 1133 proteins in 280 species: Archae - 0%3B Bacteria - 267%3B Metazoa - 336%3B Fungi - 8%3B Plants - 196%3B Viruses - 0%3B Other Eukaryotes - 336 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12021284, PMID:15634198, PMID:16244908, PMID:18650403, locus:2006742; locus_type=protein_coding
AT1G14700.2	chr1:005058680	0.0	W/5058680-5058967,5059473-5059629,5059732-5059833,5059930-5060057,5060361-5060489,5060584-5060651,5060766-5060988	AT1G14700.2 CDS AT1G14700 ID=AT1G14700.2; Parent=AT1G14700; Name=AT1G14700.2; Note=purple acid phosphatase 3; conf_class=3; symbol=PAP3; Alias=ATPAP3; full_name=purple acid phosphatase 3; computational_description=purple acid phosphatase 3 (PAP3)%3B FUNCTIONS IN: protein serine/threonine phosphatase activity%2C acid phosphatase activity%3B LOCATED IN: vacuole%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843)%3B BEST Arabidopsis thaliana protein match is: purple acid phosphatase 8 (TAIR:AT2G01890.1)%3B Has 1143 Blast hits to 1133 proteins in 280 species: Archae - 0%3B Bacteria - 267%3B Metazoa - 336%3B Fungi - 8%3B Plants - 196%3B Viruses - 0%3B Other Eukaryotes - 336 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12021284, PMID:15634198, PMID:16244908, PMID:18650403, locus:2006742; locus_type=protein_coding
AT1G14700.4	chr1:005058680	0.0	W/5058680-5058967,5059473-5059629,5059726-5059833,5059930-5060057,5060361-5060489,5060584-5060655	AT1G14700.4 CDS AT1G14700 ID=AT1G14700.4; Parent=AT1G14700; Name=AT1G14700.4; Note=purple acid phosphatase 3; symbol=PAP3; Alias=ATPAP3; full_name=purple acid phosphatase 3; computational_description=purple acid phosphatase 3 (PAP3)%3B FUNCTIONS IN: protein serine/threonine phosphatase activity%2C acid phosphatase activity%3B LOCATED IN: vacuole%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843)%3B BEST Arabidopsis thaliana protein match is: purple acid phosphatase 8 (TAIR:AT2G01890.1)%3B Has 1143 Blast hits to 1133 proteins in 280 species: Archae - 0%3B Bacteria - 267%3B Metazoa - 336%3B Fungi - 8%3B Plants - 196%3B Viruses - 0%3B Other Eukaryotes - 336 (source: NCBI BLink).; Dbxref=PMID:12021284, PMID:15634198, PMID:16244908, PMID:18650403, locus:2006742; locus_type=protein_coding
AT1G14700.3	chr1:005059473	0.0	W/5059473-5059629,5059726-5059833,5059930-5060057,5060361-5060489,5060584-5060651,5060766-5060988	AT1G14700.3 CDS AT1G14700 ID=AT1G14700.3; Parent=AT1G14700; Name=AT1G14700.3; Note=purple acid phosphatase 3; symbol=PAP3; Alias=ATPAP3; full_name=purple acid phosphatase 3; computational_description=purple acid phosphatase 3 (PAP3)%3B FUNCTIONS IN: protein serine/threonine phosphatase activity%2C acid phosphatase activity%3B LOCATED IN: vacuole%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843)%3B BEST Arabidopsis thaliana protein match is: purple acid phosphatase 8 (TAIR:AT2G01890.1)%3B Has 1143 Blast hits to 1133 proteins in 280 species: Archae - 0%3B Bacteria - 267%3B Metazoa - 336%3B Fungi - 8%3B Plants - 196%3B Viruses - 0%3B Other Eukaryotes - 336 (source: NCBI BLink).; Dbxref=PMID:12021284, PMID:15634198, PMID:16244908, PMID:18650403, locus:2006742; locus_type=protein_coding
AT1G14710.1	chr1:005062168	0.0	C/5062168-5062717,5062807-5062961,5063067-5063179,5063252-5063359,5063438-5063555,5063631-5063734,5063823-5063930,5064148-5064697	AT1G14710.1 CDS AT1G14710 ID=AT1G14710.1; Parent=AT1G14710; Name=AT1G14710.1; Note=hydroxyproline-rich glycoprotein family protein; conf_class=2; computational_description=hydroxyproline-rich glycoprotein family protein%3B BEST Arabidopsis thaliana protein match is: oxidoreductase%2C 2OG-Fe(II) oxygenase family protein (TAIR:AT4G02940.1)%3B Has 6006 Blast hits to 3456 proteins in 374 species: Archae - 2%3B Bacteria - 410%3B Metazoa - 1957%3B Fungi - 511%3B Plants - 1958%3B Viruses - 385%3B Other Eukaryotes - 783 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:20736450, locus:2006717; locus_type=protein_coding
AT1G14710.2	chr1:005062168	0.0	C/5062168-5062717,5062807-5062961,5063067-5063179,5063252-5063359,5063438-5063555,5063631-5063734,5063823-5063930,5064148-5064697	AT1G14710.2 CDS AT1G14710 ID=AT1G14710.2; Parent=AT1G14710; Name=AT1G14710.2; Note=hydroxyproline-rich glycoprotein family protein; conf_class=2; computational_description=hydroxyproline-rich glycoprotein family protein%3B BEST Arabidopsis thaliana protein match is: oxidoreductase%2C 2OG-Fe(II) oxygenase family protein (TAIR:AT4G02940.1)%3B Has 6006 Blast hits to 3456 proteins in 374 species: Archae - 2%3B Bacteria - 410%3B Metazoa - 1957%3B Fungi - 511%3B Plants - 1958%3B Viruses - 385%3B Other Eukaryotes - 783 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:20736450, locus:2006717; locus_type=protein_coding
AT1G14720.1	chr1:005066806	0.0	C/5066806-5067310,5067782-5067990,5068095-5068195,5068283-5068466	AT1G14720.1 CDS AT1G14720 ID=AT1G14720.1; Parent=AT1G14720; Name=AT1G14720.1; Note=xyloglucan endotransglucosylase/hydrolase 28; curator_summary=member of Glycoside Hydrolase Family 16; conf_class=2; symbol=XTH28; Alias=ATXTH28, EXGT-A2, ENDOXYLOGLUCAN TRANSFERASE A2, XTR2, xyloglucan endotransglycosylase related 2; full_name=xyloglucan endotransglucosylase/hydrolase 28; computational_description=xyloglucan endotransglucosylase/hydrolase 28 (XTH28)%3B FUNCTIONS IN: hydrolase activity%2C acting on glycosyl bonds%2C xyloglucan:xyloglucosyl transferase activity%3B INVOLVED IN: fruit development%2C stamen filament development%3B LOCATED IN: endomembrane system%2C cell wall%2C apoplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455)%2C Xyloglucan endo-transglycosylase%2C C-terminal (InterPro:IPR010713)%2C Concanavalin A-like lectin/glucanase%2C subgroup (InterPro:IPR013320)%2C Concanavalin A-like lectin/glucanase (InterPro:IPR008985)%2C Glycoside hydrolase%2C family 16 (InterPro:IPR000757)%3B BEST Arabidopsis thaliana protein match is: endoxyloglucan transferase A3 (TAIR:AT2G01850.1)%3B Has 2041 Blast hits to 2031 proteins in 289 species: Archae - 0%3B Bacteria - 238%3B Metazoa - 0%3B Fungi - 395%3B Plants - 1341%3B Viruses - 0%3B Other Eukaryotes - 67 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10557219, PMID:11673616, PMID:12102506, PMID:12172015, PMID:12514239, PMID:12953064, PMID:14585825, PMID:15208394, PMID:15720654, PMID:17149585, PMID:17227549, PMID:18192438, PMID:18650403, PMID:18805951, PMID:19139039, locus:2006857; locus_type=protein_coding
AT1G14730.1	chr1:005073244	0.0	W/5073244-5073408,5073587-5073635,5073986-5074185,5074308-5074568	AT1G14730.1 CDS AT1G14730 ID=AT1G14730.1; Parent=AT1G14730; Name=AT1G14730.1; Note=Cytochrome b561/ferric reductase transmembrane protein family; conf_class=2; computational_description=Cytochrome b561/ferric reductase transmembrane protein family%3B LOCATED IN: endomembrane system%2C integral to membrane%3B EXPRESSED IN: 16 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Cytochrome b561%2C eukaryote (InterPro:IPR004877)%2C Cytochrome b561/ferric reductase transmembrane (InterPro:IPR006593)%3B BEST Arabidopsis thaliana protein match is: Cytochrome b561/ferric reductase transmembrane protein family (TAIR:AT4G25570.1)%3B Has 599 Blast hits to 596 proteins in 97 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 368%3B Fungi - 6%3B Plants - 197%3B Viruses - 0%3B Other Eukaryotes - 28 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15032866, locus:2006752; locus_type=protein_coding
AT1G14740.1	chr1:005075450	0.0	C/5075450-5075925,5076007-5077732	AT1G14740.1 CDS AT1G14740 ID=AT1G14740.1; Parent=AT1G14740; Name=AT1G14740.1; Note=class I heat shock protein%2C putative (DUF1423); curator_summary=Encodes a PHD-finger protein that%2C with TTA1%2C is redundantly required for MP-dependent embryonic root meristem initiation.; conf_class=1; symbol=TTA1; full_name=TITANIA 1; computational_description=Protein of unknown function (DUF1423)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1423%2C plant (InterPro:IPR004082)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1423) (TAIR:AT3G63500.1)%3B Has 415 Blast hits to 414 proteins in 82 species: Archae - 3%3B Bacteria - 32%3B Metazoa - 64%3B Fungi - 8%3B Plants - 255%3B Viruses - 0%3B Other Eukaryotes - 53 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14963126, PMID:18650403, PMID:19392692, PMID:22378640, locus:2006837; locus_type=protein_coding
AT1G14750.3	chr1:005079648	0.0	C/5079648-5079842,5079936-5080116,5080205-5080333,5080631-5080797,5081047-5081214,5081404-5082423	AT1G14750.3 CDS AT1G14750 ID=AT1G14750.3; Parent=AT1G14750; Name=AT1G14750.3; Note=Cyclin family protein; symbol=SDS; full_name=SOLO DANCERS; curator_summary=Encodes a meiotic cyclin-like protein%2C distinct from all other known Arabidopsis cyclins. It is not required for meiotic DSB formation but is necessary for meiotic DSB repair via the homologous chromosome.; computational_description=SOLO DANCERS (SDS)%3B FUNCTIONS IN: cyclin-dependent protein kinase activity%3B INVOLVED IN: chiasma assembly%2C regulation of cell cycle%2C double-strand break repair via homologous recombination%3B LOCATED IN: nucleus%2C chloroplast%3B EXPRESSED IN: shoot apex%2C flower%2C seed%3B EXPRESSED DURING: F mature embryo stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%3B CONTAINS InterPro DOMAIN/s: Cyclin%2C C-terminal (InterPro:IPR004367)%2C Cyclin-like (InterPro:IPR011028)%2C Cyclin-related (InterPro:IPR013763)%2C Cyclin%2C N-terminal (InterPro:IPR006671)%2C Cyclin (InterPro:IPR006670)%3B BEST Arabidopsis thaliana protein match is: Cyclin family protein (TAIR:AT5G06150.1)%3B Has 3541 Blast hits to 3470 proteins in 348 species: Archae - 0%3B Bacteria - 40%3B Metazoa - 1630%3B Fungi - 464%3B Plants - 953%3B Viruses - 3%3B Other Eukaryotes - 451 (source: NCBI BLink).; Dbxref=PMID:12065421, PMID:17965180, PMID:19417775, PMID:19763177, PMID:20736450, locus:2006827; locus_type=protein_coding
AT1G14750.1	chr1:005079674	0.0	C/5079674-5079700,5079798-5079842,5079936-5080116,5080205-5080333,5080631-5080797,5081047-5081214,5081404-5082423	AT1G14750.1 CDS AT1G14750 ID=AT1G14750.1; Parent=AT1G14750; Name=AT1G14750.1; Note=Cyclin family protein; curator_summary=Encodes a meiotic cyclin-like protein%2C distinct from all other known Arabidopsis cyclins. It is not required for meiotic DSB formation but is necessary for meiotic DSB repair via the homologous chromosome.; conf_class=1; symbol=SDS; full_name=SOLO DANCERS; computational_description=SOLO DANCERS (SDS)%3B FUNCTIONS IN: cyclin-dependent protein kinase activity%3B INVOLVED IN: chiasma assembly%2C regulation of cell cycle%2C double-strand break repair via homologous recombination%3B LOCATED IN: nucleus%2C chloroplast%3B EXPRESSED IN: shoot apex%2C flower%2C seed%3B EXPRESSED DURING: F mature embryo stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%3B CONTAINS InterPro DOMAIN/s: Cyclin%2C C-terminal (InterPro:IPR004367)%2C Cyclin-like (InterPro:IPR011028)%2C Cyclin-related (InterPro:IPR013763)%2C Cyclin%2C N-terminal (InterPro:IPR006671)%2C Cyclin (InterPro:IPR006670)%3B BEST Arabidopsis thaliana protein match is: Cyclin family protein (TAIR:AT5G06150.1)%3B Has 3541 Blast hits to 3470 proteins in 348 species: Archae - 0%3B Bacteria - 40%3B Metazoa - 1630%3B Fungi - 464%3B Plants - 953%3B Viruses - 3%3B Other Eukaryotes - 451 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12065421, PMID:17965180, PMID:19417775, PMID:19763177, PMID:20736450, locus:2006827; locus_type=protein_coding
AT1G14750.2	chr1:005079674	0.0	C/5079674-5079700,5079798-5079842,5079936-5080116,5080205-5080333,5080631-5080797,5081047-5081214,5081404-5081655,5082160-5082423	AT1G14750.2 CDS AT1G14750 ID=AT1G14750.2; Parent=AT1G14750; Name=AT1G14750.2; Note=Cyclin family protein; curator_summary=Encodes a meiotic cyclin-like protein%2C distinct from all other known Arabidopsis cyclins. It is not required for meiotic DSB formation but is necessary for meiotic DSB repair via the homologous chromosome.; conf_class=2; symbol=SDS; full_name=SOLO DANCERS; computational_description=SOLO DANCERS (SDS)%3B FUNCTIONS IN: cyclin-dependent protein kinase activity%3B INVOLVED IN: chiasma assembly%2C regulation of cell cycle%2C double-strand break repair via homologous recombination%3B LOCATED IN: nucleus%2C chloroplast%3B EXPRESSED IN: shoot apex%2C flower%2C seed%3B EXPRESSED DURING: F mature embryo stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%3B CONTAINS InterPro DOMAIN/s: Cyclin%2C C-terminal (InterPro:IPR004367)%2C Cyclin-like (InterPro:IPR011028)%2C Cyclin-related (InterPro:IPR013763)%2C Cyclin%2C N-terminal (InterPro:IPR006671)%2C Cyclin (InterPro:IPR006670)%3B BEST Arabidopsis thaliana protein match is: Cyclin family protein (TAIR:AT5G06150.1)%3B Has 3541 Blast hits to 3470 proteins in 348 species: Archae - 0%3B Bacteria - 40%3B Metazoa - 1630%3B Fungi - 464%3B Plants - 953%3B Viruses - 3%3B Other Eukaryotes - 451 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12065421, PMID:17965180, PMID:19417775, PMID:19763177, PMID:20736450, locus:2006827; locus_type=protein_coding
AT1G14750.4	chr1:005079674	0.0	C/5079674-5079700,5079798-5079842,5079936-5080116,5080208-5080333,5080631-5080797,5081047-5081214,5081404-5081655,5082160-5082423	AT1G14750.4 CDS AT1G14750 ID=AT1G14750.4; Parent=AT1G14750; Name=AT1G14750.4; Note=Cyclin family protein; symbol=SDS; full_name=SOLO DANCERS; curator_summary=Encodes a meiotic cyclin-like protein%2C distinct from all other known Arabidopsis cyclins. It is not required for meiotic DSB formation but is necessary for meiotic DSB repair via the homologous chromosome.; computational_description=SOLO DANCERS (SDS)%3B FUNCTIONS IN: cyclin-dependent protein kinase activity%3B INVOLVED IN: chiasma assembly%2C regulation of cell cycle%2C double-strand break repair via homologous recombination%3B LOCATED IN: nucleus%2C chloroplast%3B EXPRESSED IN: shoot apex%2C flower%2C seed%3B EXPRESSED DURING: F mature embryo stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%3B CONTAINS InterPro DOMAIN/s: Cyclin%2C C-terminal (InterPro:IPR004367)%2C Cyclin-like (InterPro:IPR011028)%2C Cyclin-related (InterPro:IPR013763)%2C Cyclin%2C N-terminal (InterPro:IPR006671)%2C Cyclin (InterPro:IPR006670)%3B BEST Arabidopsis thaliana protein match is: Cyclin family protein (TAIR:AT5G06150.1)%3B Has 3541 Blast hits to 3470 proteins in 348 species: Archae - 0%3B Bacteria - 40%3B Metazoa - 1630%3B Fungi - 464%3B Plants - 953%3B Viruses - 3%3B Other Eukaryotes - 451 (source: NCBI BLink).; Dbxref=PMID:12065421, PMID:17965180, PMID:19417775, PMID:19763177, PMID:20736450, locus:2006827; locus_type=protein_coding
AT1TE16450	chr1:005082821	0.0	W/5082821-5083651	AT1TE16450 transposable_element AT1TE16450 ID=AT1TE16450; Name=AT1TE16450; Alias=ATREP15
AT1G14755.1	chr1:005083765	0.0	W/5083765-5083825,5083923-5084098	AT1G14755.1 CDS AT1G14755 ID=AT1G14755.1; Parent=AT1G14755; Name=AT1G14755.1; Note=S locus-related glycoprotein 1 (SLR1) binding pollen coat protein family; curator_summary=Encodes a defensin-like (DEFL) family protein.; conf_class=2; computational_description=S locus-related glycoprotein 1 (SLR1) binding pollen coat protein family%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:1009023128; locus_type=protein_coding
AT1G14760.2	chr1:005084530	0.0	C/5084530-5084655,5084826-5084951,5085049-5085213	AT1G14760.2 CDS AT1G14760 ID=AT1G14760.2; Parent=AT1G14760; Name=AT1G14760.2; Note=KNOX meinox protein; curator_summary=Encodes a novel Arabidopsis KNOX gene that encodes a MEINOX domain but lacks the homeodomain and interacts with TALE-class homeodomain proteins to modulate their activities; conf_class=3; symbol=KNATM; full_name=KNOX Arabidopsis thaliana meinox; computational_description=KNOX Arabidopsis thaliana meinox (KNATM)%3B CONTAINS InterPro DOMAIN/s: KNOX1 (InterPro:IPR005540)%3B Has 38 Blast hits to 38 proteins in 13 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 38%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18398054, PMID:18650403, PMID:20371112, PMID:23271976, locus:2006782; locus_type=protein_coding
AT1G14760.3	chr1:005084530	0.0	C/5084530-5084655,5085049-5085213	AT1G14760.3 CDS AT1G14760 ID=AT1G14760.3; Parent=AT1G14760; Name=AT1G14760.3; Note=KNOX meinox protein; curator_summary=Encodes a novel Arabidopsis KNOX gene that encodes a MEINOX domain but lacks the homeodomain and interacts with TALE-class homeodomain proteins to modulate their activities; conf_class=3; symbol=KNATM; full_name=KNOX Arabidopsis thaliana meinox; computational_description=KNOX Arabidopsis thaliana meinox (KNATM)%3B CONTAINS InterPro DOMAIN/s: KNOX1 (InterPro:IPR005540)%3B Has 38 Blast hits to 38 proteins in 13 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 38%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18398054, PMID:18650403, PMID:20371112, PMID:23271976, locus:2006782; locus_type=protein_coding
AT1G14760.1	chr1:005084688	0.0	C/5084688-5084951,5085049-5085213	AT1G14760.1 CDS AT1G14760 ID=AT1G14760.1; Parent=AT1G14760; Name=AT1G14760.1; Note=KNOX meinox protein; curator_summary=Encodes a novel Arabidopsis KNOX gene that encodes a MEINOX domain but lacks the homeodomain and interacts with TALE-class homeodomain proteins to modulate their activities; conf_class=4; symbol=KNATM; full_name=KNOX Arabidopsis thaliana meinox; computational_description=KNOX Arabidopsis thaliana meinox (KNATM)%3B CONTAINS InterPro DOMAIN/s: KNOX1 (InterPro:IPR005540)%3B Has 38 Blast hits to 38 proteins in 13 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 38%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:18398054, PMID:18650403, PMID:20371112, PMID:23271976, locus:2006782; locus_type=protein_coding
AT1G14770.1	chr1:005086867	0.0	C/5086867-5087706,5087813-5087920,5088022-5088224,5088299-5088437	AT1G14770.1 CDS AT1G14770 ID=AT1G14770.1; Parent=AT1G14770; Name=AT1G14770.1; Note=RING/FYVE/PHD zinc finger superfamily protein; conf_class=2; computational_description=RING/FYVE/PHD zinc finger superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 13 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C PHD-type%2C conserved site (InterPro:IPR019786)%2C Zinc finger%2C FYVE/PHD-type (InterPro:IPR011011)%3B BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT1G68030.1)%3B Has 95 Blast hits to 84 proteins in 31 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 18%3B Fungi - 12%3B Plants - 59%3B Viruses - 0%3B Other Eukaryotes - 6 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2006792; locus_type=protein_coding
AT1G14770.2	chr1:005086867	0.0	C/5086867-5087706,5087813-5087920,5088022-5088224,5088299-5088437	AT1G14770.2 CDS AT1G14770 ID=AT1G14770.2; Parent=AT1G14770; Name=AT1G14770.2; Note=RING/FYVE/PHD zinc finger superfamily protein; conf_class=2; computational_description=RING/FYVE/PHD zinc finger superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 13 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C PHD-type%2C conserved site (InterPro:IPR019786)%2C Zinc finger%2C FYVE/PHD-type (InterPro:IPR011011)%3B BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT1G68030.1)%3B Has 95 Blast hits to 84 proteins in 31 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 18%3B Fungi - 12%3B Plants - 59%3B Viruses - 0%3B Other Eukaryotes - 6 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2006792; locus_type=protein_coding
AT1G14780.1	chr1:005091020	0.0	W/5091020-5091283,5091387-5091631,5092118-5092331,5092456-5092530,5092614-5092797,5092888-5093057,5093142-5093873	AT1G14780.1 CDS AT1G14780 ID=AT1G14780.1; Parent=AT1G14780; Name=AT1G14780.1; Note=MAC/Perforin domain-containing protein; conf_class=2; computational_description=MAC/Perforin domain-containing protein%3B CONTAINS InterPro DOMAIN/s: Membrane attack complex component/perforin (MACPF) domain (InterPro:IPR020864)%3B BEST Arabidopsis thaliana protein match is: MAC/Perforin domain-containing protein (TAIR:AT4G24290.2)%3B Has 221 Blast hits to 220 proteins in 25 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 19%3B Fungi - 0%3B Plants - 202%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15799997, PMID:16900325, PMID:18650403, PMID:20736450, locus:2006807; locus_type=protein_coding
AT1G14790.1	chr1:005094317	0.0	C/5094317-5095129,5095210-5095360,5095458-5097817	AT1G14790.1 CDS AT1G14790 ID=AT1G14790.1; Parent=AT1G14790; Name=AT1G14790.1; Note=RNA-dependent RNA polymerase 1; curator_summary=Encodes RNA-dependent RNA polymerase. While not required for virus-induced post-transcriptional gene silencing (PTGS)%2C it can promote turnover of viral RNAs in infected plants. Nomenclature according to Xie%2C et al. (2004). Involved in the production of Cucumber Mosaic Virus siRNAs.; conf_class=1; symbol=RDR1; Alias=ATRDRP1, AtRDR1; full_name=RNA-dependent RNA polymerase 1; computational_description=RNA-dependent RNA polymerase 1 (RDR1)%3B CONTAINS InterPro DOMAIN/s: RNA-dependent RNA polymerase%2C eukaryotic-type (InterPro:IPR007855)%3B BEST Arabidopsis thaliana protein match is: RNA-dependent RNA polymerase 2 (TAIR:AT4G11130.1)%3B Has 638 Blast hits to 623 proteins in 115 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 73%3B Fungi - 286%3B Plants - 205%3B Viruses - 2%3B Other Eukaryotes - 70 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12650452, PMID:15024409, PMID:15908605, PMID:16900325, PMID:17586651, PMID:18700826, PMID:19308254, PMID:18353962, PMID:19966292, PMID:20190077, PMID:22689894, PMID:23028332, PMID:23313553, PMID:23503757, PMID:23799112, PMID:24098767, PMID:24531234, PMID:24980094, PMID:25201959, locus:2006822; locus_type=protein_coding
AT1TE16500	chr1:005098849	0.0	W/5098849-5099142	AT1TE16500 transposable_element AT1TE16500 ID=AT1TE16500; Name=AT1TE16500; Alias=VANDAL6
AT1G14800.1	chr1:005099572	0.0	W/5099572-5099751,5099835-5100108,5100188-5100269,5100352-5100419,5100529-5100611,5100734-5100854,5101020-5101245,5102438-5102558	AT1G14800.1 CDS AT1G14800 ID=AT1G14800.1; Parent=AT1G14800; Name=AT1G14800.1; Note=Nucleic acid-binding%2C OB-fold-like protein; conf_class=6; computational_description=Nucleic acid-binding%2C OB-fold-like protein%3B CONTAINS InterPro DOMAIN/s: Nucleic acid-binding%2C OB-fold (InterPro:IPR012340)%2C Nucleic acid-binding%2C OB-fold-like (InterPro:IPR016027)%3B BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G35280.1)%3B Has 210 Blast hits to 208 proteins in 13 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2%3B Fungi - 2%3B Plants - 206%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=**; Dbxref=locus:2006847; locus_type=protein_coding
AT1TE16505	chr1:005100442	0.0	W/5100442-5100610	AT1TE16505 transposable_element AT1TE16505 ID=AT1TE16505; Name=AT1TE16505; Alias=VANDAL6
AT1G14810.1	chr1:005102684	0.0	C/5102684-5102765,5102847-5103001,5103339-5103440,5103537-5103632,5103728-5103772,5103874-5103960,5104073-5104633	AT1G14810.1 CDS AT1G14810 ID=AT1G14810.1; Parent=AT1G14810; Name=AT1G14810.1; Note=semialdehyde dehydrogenase family protein; curator_summary=encodes an aspartate semialdehyde dehydrogenase%2C which produces the branch point intermediate for lysine and threonine/methionine biosynthesis; conf_class=2; computational_description=semialdehyde dehydrogenase family protein%3B FUNCTIONS IN: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor%2C aspartate-semialdehyde dehydrogenase activity%3B INVOLVED IN: cellular amino acid biosynthetic process%2C oxidation reduction%2C threonine biosynthetic process%2C methionine biosynthetic process%2C cellular amino acid metabolic process%3B LOCATED IN: mitochondrion%2C chloroplast stroma%2C chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Semialdehyde dehydrogenase%2C dimerisation domain (InterPro:IPR012280)%2C Semialdehyde dehydrogenase%2C NAD-binding (InterPro:IPR000534)%2C Aspartate-semialdehyde dehydrogenase%2C bacterial (InterPro:IPR005986)%2C Aspartate-semialdehyde dehydrogenase (InterPro:IPR012080)%3B Has 10268 Blast hits to 10266 proteins in 2514 species: Archae - 260%3B Bacteria - 6386%3B Metazoa - 3%3B Fungi - 175%3B Plants - 61%3B Viruses - 0%3B Other Eukaryotes - 3383 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11812229, PMID:14671022, PMID:17828791, PMID:18375600, PMID:18650403, locus:2006867; locus_type=protein_coding
AT1G05123.1	chr1:005102981	0.0	W/5102981-5103303	AT1G05123.1 antisense_lncRNA AT1G05123 ID=AT1G05123.1; Parent=AT1G05123; Name=AT1G05123.1; description=Natural antisense transcript overlaps with AT1G14810; Note=Natural antisense transcript overlaps with AT1G14810; locus_type=antisense_long_noncoding_rna
AT1G14810.2	chr1:005103152	0.0	C/5103152-5103181,5103339-5103440,5103537-5103632,5103728-5103772,5103874-5103960,5104073-5104633	AT1G14810.2 CDS AT1G14810 ID=AT1G14810.2; Parent=AT1G14810; Name=AT1G14810.2; Note=semialdehyde dehydrogenase family protein; curator_summary=encodes an aspartate semialdehyde dehydrogenase%2C which produces the branch point intermediate for lysine and threonine/methionine biosynthesis; computational_description=semialdehyde dehydrogenase family protein%3B FUNCTIONS IN: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor%2C aspartate-semialdehyde dehydrogenase activity%3B INVOLVED IN: cellular amino acid biosynthetic process%2C oxidation reduction%2C threonine biosynthetic process%2C methionine biosynthetic process%2C cellular amino acid metabolic process%3B LOCATED IN: mitochondrion%2C chloroplast stroma%2C chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Semialdehyde dehydrogenase%2C dimerisation domain (InterPro:IPR012280)%2C Semialdehyde dehydrogenase%2C NAD-binding (InterPro:IPR000534)%2C Aspartate-semialdehyde dehydrogenase%2C bacterial (InterPro:IPR005986)%2C Aspartate-semialdehyde dehydrogenase (InterPro:IPR012080)%3B Has 10268 Blast hits to 10266 proteins in 2514 species: Archae - 260%3B Bacteria - 6386%3B Metazoa - 3%3B Fungi - 175%3B Plants - 61%3B Viruses - 0%3B Other Eukaryotes - 3383 (source: NCBI BLink).; Dbxref=PMID:11812229, PMID:14671022, PMID:17828791, PMID:18375600, PMID:18650403, locus:2006867; locus_type=protein_coding
AT1G14820.1	chr1:005105237	0.0	C/5105237-5105398,5105487-5105597,5105683-5105800,5105888-5105924,5106163-5106454	AT1G14820.1 CDS AT1G14820 ID=AT1G14820.1; Parent=AT1G14820; Name=AT1G14820.1; Note=Sec14p-like phosphatidylinositol transfer family protein; conf_class=2; computational_description=Sec14p-like phosphatidylinositol transfer family protein%3B CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function%2C C-terminal (InterPro:IPR001251)%2C Phosphatidylinositol transfer protein-like%2C N-terminal (InterPro:IPR011074)%3B BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT1G01630.1)%3B Has 1699 Blast hits to 1699 proteins in 217 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 335%3B Fungi - 476%3B Plants - 691%3B Viruses - 0%3B Other Eukaryotes - 197 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2006732; locus_type=protein_coding
AT1G14820.2	chr1:005105237	0.0	C/5105237-5105398,5105487-5105597,5105683-5105800,5105888-5105924,5106163-5106454	AT1G14820.2 CDS AT1G14820 ID=AT1G14820.2; Parent=AT1G14820; Name=AT1G14820.2; Note=Sec14p-like phosphatidylinositol transfer family protein; conf_class=1; computational_description=Sec14p-like phosphatidylinositol transfer family protein%3B CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function%2C C-terminal (InterPro:IPR001251)%2C Phosphatidylinositol transfer protein-like%2C N-terminal (InterPro:IPR011074)%3B BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT1G01630.1)%3B Has 1699 Blast hits to 1699 proteins in 217 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 335%3B Fungi - 476%3B Plants - 691%3B Viruses - 0%3B Other Eukaryotes - 197 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:2006732; locus_type=protein_coding
AT1G14820.3	chr1:005105237	0.0	C/5105237-5105398,5105487-5105597,5105683-5105800,5105888-5105924,5106163-5106421,5106722-5106793	AT1G14820.3 CDS AT1G14820 ID=AT1G14820.3; Parent=AT1G14820; Name=AT1G14820.3; Note=Sec14p-like phosphatidylinositol transfer family protein; conf_class=2; computational_description=Sec14p-like phosphatidylinositol transfer family protein%3B CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function%2C C-terminal (InterPro:IPR001251)%2C Phosphatidylinositol transfer protein-like%2C N-terminal (InterPro:IPR011074)%3B BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT1G01630.1)%3B Has 1699 Blast hits to 1699 proteins in 217 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 335%3B Fungi - 476%3B Plants - 691%3B Viruses - 0%3B Other Eukaryotes - 197 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2006732; locus_type=protein_coding
AT1G14830.1	chr1:005107699	0.0	C/5107699-5107824,5107919-5108058,5108137-5108377,5108471-5108521,5108615-5108840,5109161-5109231,5109317-5109436,5109531-5109725,5109821-5109885,5109977-5110067,5110215-5110276,5110384-5110434,5110636-5110737,5110829-5110936,5111156-5111219,5111339-5111470	AT1G14830.1 CDS AT1G14830 ID=AT1G14830.1; Parent=AT1G14830; Name=AT1G14830.1; Note=DYNAMIN-like 1C; curator_summary=Encodes a dynamin-like protein that is involved in mitochondrial morphogenesis and pollen development. Protein is localized as speckles in the cytoplasm%2C partially co-localizes with mitochondrial markers%2C cell plate of dividing cells%2C and the tip of root hairs%2C root cap cells%2C and expanding part of trichoblasts.; conf_class=1; symbol=DL1C; Alias=ADL1C, DYNAMIN-like 1C, ADL5, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DRP1C, DYNAMIN RELATED PROTEIN 1C; full_name=DYNAMIN-like 1C; computational_description=DYNAMIN-like 1C (DL1C)%3B FUNCTIONS IN: GTP binding%2C GTPase activity%3B INVOLVED IN: mitochondrial fission%2C pollen maturation%2C mitochondrion organization%3B LOCATED IN: cell cortex%2C plasma membrane%2C membrane%2C cell plate%3B EXPRESSED IN: 29 plant structures%3B EXPRESSED DURING: 16 growth stages%3B CONTAINS InterPro DOMAIN/s: Dynamin GTPase effector (InterPro:IPR003130)%2C Dynamin%2C GTPase domain (InterPro:IPR001401)%2C Dynamin%2C GTPase region%2C conserved site (InterPro:IPR019762)%2C GTPase effector domain%2C GED (InterPro:IPR020850)%2C Dynamin central region (InterPro:IPR000375)%3B BEST Arabidopsis thaliana protein match is: DYNAMIN-like 1E (TAIR:AT3G60190.1)%3B Has 2810 Blast hits to 2715 proteins in 313 species: Archae - 2%3B Bacteria - 34%3B Metazoa - 1054%3B Fungi - 805%3B Plants - 579%3B Viruses - 0%3B Other Eukaryotes - 336 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11351070, PMID:16618929, PMID:18344418, PMID:18502847, PMID:18809930, PMID:18775970, PMID:20118269, PMID:20959563, locus:2006777; locus_type=protein_coding
AT1G14840.1	chr1:005112415	0.0	C/5112415-5112454,5112542-5112729,5112825-5113352,5113432-5113503,5113612-5113758,5113863-5114018,5114125-5114295,5114402-5114572,5114654-5114719,5114919-5115004,5115110-5115299	AT1G14840.1 CDS AT1G14840 ID=AT1G14840.1; Parent=AT1G14840; Name=AT1G14840.1; Note=microtubule-associated proteins 70-4; curator_summary=Encodes a microtubule associated protein (MAP70-4). Expressed in all tissues.; conf_class=1; symbol=MAP70-4; Alias=ATMAP70-4, microtubule-associated proteins 70-4; full_name=microtubule-associated proteins 70-4; computational_description=microtubule-associated proteins 70-4 (MAP70-4)%3B FUNCTIONS IN: microtubule binding%3B INVOLVED IN: cytoskeleton organization%3B LOCATED IN: microtubule%2C plasma membrane%3B EXPRESSED IN: 18 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Myosin II heavy chain-like (InterPro:IPR009768)%3B BEST Arabidopsis thaliana protein match is: microtubule-associated proteins 70-3 (TAIR:AT2G01750.1)%3B Has 44078 Blast hits to 26830 proteins in 2000 species: Archae - 639%3B Bacteria - 5780%3B Metazoa - 22591%3B Fungi - 3541%3B Plants - 2515%3B Viruses - 207%3B Other Eukaryotes - 8805 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14576160, PMID:15860013, PMID:18650403, locus:2006787; locus_type=protein_coding
AT1G14840.2	chr1:005112415	0.0	C/5112415-5112454,5112542-5112729,5112825-5113352,5113432-5113503,5113657-5113758,5113863-5114018,5114125-5114295,5114402-5114572,5114654-5114719,5114919-5115004,5115110-5115299	AT1G14840.2 CDS AT1G14840 ID=AT1G14840.2; Parent=AT1G14840; Name=AT1G14840.2; Note=microtubule-associated proteins 70-4; curator_summary=Encodes a microtubule associated protein (MAP70-4). Expressed in all tissues.; conf_class=4; symbol=MAP70-4; Alias=ATMAP70-4, microtubule-associated proteins 70-4; full_name=microtubule-associated proteins 70-4; computational_description=microtubule-associated proteins 70-4 (MAP70-4)%3B FUNCTIONS IN: microtubule binding%3B INVOLVED IN: cytoskeleton organization%3B LOCATED IN: microtubule%2C plasma membrane%3B EXPRESSED IN: 18 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Myosin II heavy chain-like (InterPro:IPR009768)%3B BEST Arabidopsis thaliana protein match is: microtubule-associated proteins 70-3 (TAIR:AT2G01750.1)%3B Has 44078 Blast hits to 26830 proteins in 2000 species: Archae - 639%3B Bacteria - 5780%3B Metazoa - 22591%3B Fungi - 3541%3B Plants - 2515%3B Viruses - 207%3B Other Eukaryotes - 8805 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:14576160, PMID:15860013, PMID:18650403, locus:2006787; locus_type=protein_coding
AT1G14850.1	chr1:005116921	0.0	C/5116921-5117029,5117152-5117477,5117564-5117782,5118150-5118507,5118643-5118839,5119100-5119475,5119783-5120030,5120115-5120327,5120429-5122058,5122183-5122445,5122544-5122670,5122776-5122945,5123101-5123259	AT1G14850.1 CDS AT1G14850 ID=AT1G14850.1; Parent=AT1G14850; Name=AT1G14850.1; Note=nucleoporin 155; curator_summary=Encodes a protein similar to nucleoporin%2C a a major component of the nuclear pore complex (NPC) involved in cellular nucleo-cytoplasmic transport; conf_class=2; symbol=NUP155; full_name=nucleoporin 155; computational_description=nucleoporin 155 (NUP155)%3B FUNCTIONS IN: nucleocytoplasmic transporter activity%3B INVOLVED IN: nucleocytoplasmic transport%3B LOCATED IN: nucleolus%2C plasma membrane%2C chloroplast%2C nuclear pore%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Nucleoporin%2C Nup133/Nup155-like%2C N-terminal (InterPro:IPR014908)%2C Nucleoporin%2C Nup155-like (InterPro:IPR004870)%2C Nucleoporin%2C Nup133/Nup155-like%2C C-terminal (InterPro:IPR007187)%3B Has 459 Blast hits to 396 proteins in 176 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 159%3B Fungi - 168%3B Plants - 85%3B Viruses - 0%3B Other Eukaryotes - 47 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12034489, PMID:12620105, PMID:16618929, PMID:21189294, locus:2006802; locus_type=protein_coding
AT1TE16580	chr1:005123634	0.0	W/5123634-5123802	AT1TE16580 transposable_element AT1TE16580 ID=AT1TE16580; Name=AT1TE16580; Alias=BRODYAGA1A
AT1G14860.1	chr1:005124993	0.0	W/5124993-5125063,5125138-5125243,5125359-5125442,5125536-5125805	AT1G14860.1 CDS AT1G14860 ID=AT1G14860.1; Parent=AT1G14860; Name=AT1G14860.1; Note=nudix hydrolase homolog 18; conf_class=1; symbol=NUDT18; Alias=atnudt18, nudix hydrolase homolog 18; full_name=nudix hydrolase homolog 18; computational_description=nudix hydrolase homolog 18 (NUDT18)%3B FUNCTIONS IN: hydrolase activity%3B INVOLVED IN: biological_process unknown%3B CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797)%2C NUDIX hydrolase%2C conserved site (InterPro:IPR020084)%2C NUDIX hydrolase domain (InterPro:IPR000086)%3B BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 17 (TAIR:AT2G01670.1)%3B Has 1011 Blast hits to 1010 proteins in 304 species: Archae - 0%3B Bacteria - 339%3B Metazoa - 213%3B Fungi - 121%3B Plants - 237%3B Viruses - 0%3B Other Eukaryotes - 101 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14730065, PMID:15878881, PMID:18815383, locus:2006817; locus_type=protein_coding
AT1G14870.1	chr1:005128591	0.0	C/5128591-5128676,5128790-5129002,5129094-5129165,5129371-5129458	AT1G14870.1 CDS AT1G14870 ID=AT1G14870.1; Parent=AT1G14870; Name=AT1G14870.1; Note=PLANT CADMIUM RESISTANCE 2; curator_summary=PCR2 encodes a membrane protein involved in zinc transport and detoxification.; conf_class=2; symbol=PCR2; Alias=AtPCR2; full_name=PLANT CADMIUM RESISTANCE 2; computational_description=PLANT CADMIUM RESISTANCE 2 (PCR2)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: response to oxidative stress%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: callus%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461)%3B BEST Arabidopsis thaliana protein match is: PLAC8 family protein (TAIR:AT5G35525.1)%3B Has 803 Blast hits to 802 proteins in 112 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 123%3B Fungi - 115%3B Plants - 527%3B Viruses - 0%3B Other Eukaryotes - 38 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16081496, PMID:16618929, PMID:16792696, PMID:16776300, PMID:16766691, PMID:17888165, PMID:18671872, PMID:18650403, PMID:18614705, PMID:20647347, PMID:20736450, PMID:21347707, locus:2006772; locus_type=protein_coding
AT1G14870.2	chr1:005128734	0.0	C/5128734-5129002,5129094-5129165,5129371-5129458	AT1G14870.2 CDS AT1G14870 ID=AT1G14870.2; Parent=AT1G14870; Name=AT1G14870.2; Note=PLANT CADMIUM RESISTANCE 2; symbol=PCR2; Alias=AtPCR2; full_name=PLANT CADMIUM RESISTANCE 2; curator_summary=PCR2 encodes a membrane protein involved in zinc transport and detoxification.; computational_description=PLANT CADMIUM RESISTANCE 2 (PCR2)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: response to oxidative stress%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: callus%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461)%3B BEST Arabidopsis thaliana protein match is: PLAC8 family protein (TAIR:AT5G35525.1)%3B Has 803 Blast hits to 802 proteins in 112 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 123%3B Fungi - 115%3B Plants - 527%3B Viruses - 0%3B Other Eukaryotes - 38 (source: NCBI BLink).; Dbxref=PMID:16081496, PMID:16618929, PMID:16792696, PMID:16776300, PMID:16766691, PMID:17888165, PMID:18671872, PMID:18650403, PMID:18614705, PMID:20647347, PMID:20736450, PMID:21347707, locus:2006772; locus_type=protein_coding
AT1TE16590	chr1:005129880	0.0	C/5129880-5130004	AT1TE16590 transposable_element AT1TE16590 ID=AT1TE16590; Name=AT1TE16590; Alias=BRODYAGA1A
AT1TE16595	chr1:005130005	0.0	W/5130005-5130759	AT1TE16595 transposable_element AT1TE16595 ID=AT1TE16595; Name=AT1TE16595; Alias=HELITRON2
AT1G05127.1	chr1:005131512	0.0	W/5131512-5131859	AT1G05127.1 lnc_RNA AT1G05127 ID=AT1G05127.1; Parent=AT1G05127; Name=AT1G05127.1; locus_type=long_noncoding_rna
AT1G14880.1	chr1:005132791	0.0	C/5132791-5132876,5132989-5133201,5133302-5133373,5133579-5133663	AT1G14880.1 CDS AT1G14880 ID=AT1G14880.1; Parent=AT1G14880; Name=AT1G14880.1; Note=PLANT CADMIUM RESISTANCE 1; conf_class=2; symbol=PCR1; Alias=AtPCR1; full_name=PLANT CADMIUM RESISTANCE 1; computational_description=PLANT CADMIUM RESISTANCE 1 (PCR1)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: vacuole%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461)%3B BEST Arabidopsis thaliana protein match is: PLANT CADMIUM RESISTANCE 2 (TAIR:AT1G14870.1)%3B Has 778 Blast hits to 777 proteins in 111 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 123%3B Fungi - 110%3B Plants - 511%3B Viruses - 0%3B Other Eukaryotes - 34 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15181212, PMID:15377757, PMID:15772289, PMID:15923328, PMID:16005291, PMID:16766691, PMID:18650403, PMID:18783601, PMID:20647347, PMID:21838868, PMID:23148892, locus:2006767; locus_type=protein_coding
AT1G14890.1	chr1:005137045	0.0	W/5137045-5137704	AT1G14890.1 CDS AT1G14890 ID=AT1G14890.1; Parent=AT1G14890; Name=AT1G14890.1; Note=Plant invertase/pectin methylesterase inhibitor superfamily protein; conf_class=1; computational_description=Plant invertase/pectin methylesterase inhibitor superfamily protein%3B FUNCTIONS IN: enzyme inhibitor activity%2C pectinesterase inhibitor activity%2C pectinesterase activity%3B INVOLVED IN: biological_process unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501)%3B BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT2G01610.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15272873, PMID:16307367, PMID:16367961, PMID:16489130, locus:2006842; locus_type=protein_coding
AT1G14900.1	chr1:005138665	0.0	C/5138665-5139195,5139270-5139353	AT1G14900.1 CDS AT1G14900 ID=AT1G14900.1; Parent=AT1G14900; Name=AT1G14900.1; Note=high mobility group A; curator_summary=Encodes a protein belonging to the subgroup of HMGA (high mobility group A) proteins that interact with A/T-rich stretches of DNA.; conf_class=2; symbol=HMGA; full_name=high mobility group A; computational_description=high mobility group A (HMGA)%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%2C nucleosome assembly%3B LOCATED IN: cytosol%2C nuclear chromatin%2C nucleus%3B EXPRESSED IN: 19 plant structures%3B EXPRESSED DURING: 10 growth stages%3B CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991)%2C A.T hook-like (InterPro:IPR020478)%2C AT hook%2C DNA-binding motif (InterPro:IPR017956)%2C High mobility group%2C HMG-I/HMG-Y (InterPro:IPR000116)%2C Histone H1/H5 (InterPro:IPR005818)%3B BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT3G18035.1)%3B Has 1377 Blast hits to 1228 proteins in 223 species: Archae - 0%3B Bacteria - 119%3B Metazoa - 428%3B Fungi - 179%3B Plants - 544%3B Viruses - 9%3B Other Eukaryotes - 98 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12169696, PMID:14973192, PMID:15489532, PMID:17056759, PMID:17114349, PMID:17096212, PMID:19781672, locus:2006862; locus_type=protein_coding
AT1G14910.1	chr1:005139928	0.0	C/5139928-5140665,5140801-5140916,5141005-5141083,5141172-5141354,5141445-5141525,5141616-5141696,5141771-5141836,5141927-5141992,5142124-5142174,5142298-5142390,5142476-5142603,5142721-5142859,5143093-5143190,5143288-5143357,5143482-5143571	AT1G14910.1 CDS AT1G14910 ID=AT1G14910.1; Parent=AT1G14910; Name=AT1G14910.1; Note=ENTH/ANTH/VHS superfamily protein; conf_class=3; computational_description=ENTH/ANTH/VHS superfamily protein%3B FUNCTIONS IN: phospholipid binding%2C clathrin binding%2C binding%2C phosphatidylinositol binding%3B INVOLVED IN: N-terminal protein myristoylation%2C clathrin coat assembly%3B LOCATED IN: clathrin coat%2C mitochondrion%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Epsin-like%2C N-terminal (InterPro:IPR013809)%2C ANTH (InterPro:IPR011417)%2C ENTH/VHS (InterPro:IPR008942)%2C Clathrin adaptor%2C phosphoinositide-binding%2C GAT-like (InterPro:IPR014712)%3B BEST Arabidopsis thaliana protein match is: ENTH/ANTH/VHS superfamily protein (TAIR:AT2G01600.1)%3B Has 1433 Blast hits to 1265 proteins in 231 species: Archae - 2%3B Bacteria - 84%3B Metazoa - 471%3B Fungi - 269%3B Plants - 492%3B Viruses - 2%3B Other Eukaryotes - 113 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12912986, PMID:14500793, PMID:18989364, locus:2006727; locus_type=protein_coding
AT1G14910.2	chr1:005139928	0.0	C/5139928-5140665,5140801-5140916,5141005-5141083,5141172-5141354,5141445-5141525,5141616-5141696,5141771-5141836,5141927-5141992,5142124-5142174,5142298-5142390,5142476-5142588,5142721-5142859,5143093-5143190,5143288-5143357,5143482-5143571	AT1G14910.2 CDS AT1G14910 ID=AT1G14910.2; Parent=AT1G14910; Name=AT1G14910.2; Note=ENTH/ANTH/VHS superfamily protein; computational_description=ENTH/ANTH/VHS superfamily protein%3B FUNCTIONS IN: phospholipid binding%2C clathrin binding%2C binding%2C phosphatidylinositol binding%3B INVOLVED IN: N-terminal protein myristoylation%2C clathrin coat assembly%3B LOCATED IN: clathrin coat%2C mitochondrion%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Epsin-like%2C N-terminal (InterPro:IPR013809)%2C ANTH (InterPro:IPR011417)%2C ENTH/VHS (InterPro:IPR008942)%2C Clathrin adaptor%2C phosphoinositide-binding%2C GAT-like (InterPro:IPR014712)%3B BEST Arabidopsis thaliana protein match is: ENTH/ANTH/VHS superfamily protein (TAIR:AT2G01600.1)%3B Has 1433 Blast hits to 1265 proteins in 231 species: Archae - 2%3B Bacteria - 84%3B Metazoa - 471%3B Fungi - 269%3B Plants - 492%3B Viruses - 2%3B Other Eukaryotes - 113 (source: NCBI BLink).; Dbxref=PMID:12912986, PMID:14500793, PMID:18989364, locus:2006727; locus_type=protein_coding
AT1G05133.1	chr1:005146658	0.0	W/5146658-5147266	AT1G05133.1 lnc_RNA AT1G05133 ID=AT1G05133.1; Parent=AT1G05133; Name=AT1G05133.1; locus_type=long_noncoding_rna
AT1G14920.1	chr1:005149414	0.0	W/5149414-5151015	AT1G14920.1 CDS AT1G14920 ID=AT1G14920.1; Parent=AT1G14920; Name=AT1G14920.1; Note=GRAS family transcription factor family protein; curator_summary=Similar to a putative transcription factor and transcriptional coactivators. Repressor of GA responses and involved in gibberellic acid mediated signaling. Member of the DELLA proteins that restrain the cell proliferation and expansion that drives plant growth. The protein undergoes degradation in response to GA via the 26S proteasome. GAI may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Represses GA-induced vegetative growth and floral initiation. Rapidly degraded in response to GA.; conf_class=1; symbol=GAI; Alias=RGA2, RESTORATION ON GROWTH ON AMMONIA 2; full_name=GIBBERELLIC ACID INSENSITIVE; computational_description=GIBBERELLIC ACID INSENSITIVE (GAI)%3B CONTAINS InterPro DOMAIN/s: Transcriptional factor DELLA%2C N-terminal (InterPro:IPR021914)%2C Transcription factor GRAS (InterPro:IPR005202)%3B BEST Arabidopsis thaliana protein match is: GRAS family transcription factor family protein (TAIR:AT2G01570.1)%3B Has 2718 Blast hits to 2657 proteins in 311 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 0%3B Fungi - 0%3B Plants - 2714%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:10787063, PMID:10750702, PMID:10713441, PMID:10645426, PMID:10550633, PMID:10517835, PMID:10421366, PMID:10341448, PMID:10198078, PMID:9750344, PMID:9701576, PMID:9550721, PMID:9611170, PMID:9620263, PMID:9490740, PMID:9389651, PMID:9215910, PMID:9185581, PMID:9237632, PMID:8799194, PMID:8756507, PMID:8547820, PMID:11118137, PMID:11606552, PMID:11606551, PMID:11717468, PMID:11925042, PMID:11877383, PMID:16652976, PMID:11161033, PMID:11340177, PMID:11487693, PMID:11457975, PMID:11976683, PMID:12011349, PMID:12068105, PMID:12183174, PMID:11852796, PMID:11826301, PMID:12271067, PMID:12228487, PMID:12407202, PMID:12492836, PMID:12591613, PMID:12644677, PMID:12724538, PMID:14713199, PMID:14963246, PMID:14764903, PMID:14760535, PMID:15155881, PMID:15173565, PMID:15308775, PMID:15562286, PMID:15773853, PMID:16034591, PMID:16404575, PMID:16400150, PMID:16709201, PMID:16679458, PMID:17141619, PMID:17351788, PMID:17333251, PMID:17449805, PMID:17416730, PMID:17488236, PMID:17572910, PMID:17704233, PMID:17932677, PMID:18359847, PMID:18425113, PMID:18450451, PMID:18450450, PMID:18650403, PMID:18758783, PMID:18696248, PMID:18827182, PMID:19228341, PMID:19190987, PMID:19453448, PMID:17173616, PMID:18537890, PMID:19037309, PMID:19576770, PMID:19576768, PMID:20083325, PMID:19556968, PMID:20720155, PMID:21098733, PMID:21455025, PMID:21478445, PMID:21904598, PMID:22038449, PMID:22847438, PMID:22995285, PMID:23037004, PMID:23037003, PMID:23378382, PMID:23482857, PMID:23590427, PMID:22948663, PMID:24144190, PMID:24400898, PMID:24377444, PMID:25010794, PMID:25118255, PMID:25103816, PMID:24961590, locus:2006747; locus_type=protein_coding
AT1G14930.1	chr1:005152465	0.0	C/5152465-5152745,5152849-5153035	AT1G14930.1 CDS AT1G14930 ID=AT1G14930.1; Parent=AT1G14930; Name=AT1G14930.1; Note=Polyketide cyclase/dehydrase and lipid transport superfamily protein; conf_class=1; computational_description=Polyketide cyclase/dehydrase and lipid transport superfamily protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: response to biotic stimulus%2C defense response%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916)%3B BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT1G14940.1)%3B Has 428 Blast hits to 400 proteins in 52 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 428%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12913156, PMID:12952558, PMID:15634198, locus:2006757; locus_type=protein_coding
AT1G14940.1	chr1:005154775	0.0	C/5154775-5155055,5155326-5155512	AT1G14940.1 CDS AT1G14940 ID=AT1G14940.1; Parent=AT1G14940; Name=AT1G14940.1; Note=Polyketide cyclase/dehydrase and lipid transport superfamily protein; conf_class=2; computational_description=Polyketide cyclase/dehydrase and lipid transport superfamily protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: response to biotic stimulus%2C defense response%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916)%3B BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT1G14930.1)%3B Has 362 Blast hits to 333 proteins in 40 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 362%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12952558, PMID:15634198, PMID:17028149, locus:2006797; locus_type=protein_coding
AT1G14940.2	chr1:005154775	0.0	C/5154775-5155055,5155374-5155512	AT1G14940.2 CDS AT1G14940 ID=AT1G14940.2; Parent=AT1G14940; Name=AT1G14940.2; Note=Polyketide cyclase/dehydrase and lipid transport superfamily protein; conf_class=3; computational_description=Polyketide cyclase/dehydrase and lipid transport superfamily protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: response to biotic stimulus%2C defense response%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916)%3B BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT1G14930.1)%3B Has 362 Blast hits to 333 proteins in 40 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 362%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12952558, PMID:15634198, PMID:17028149, locus:2006797; locus_type=protein_coding
AT1G14950.1	chr1:005157588	0.0	C/5157588-5157868,5157958-5158144	AT1G14950.1 CDS AT1G14950 ID=AT1G14950.1; Parent=AT1G14950; Name=AT1G14950.1; Note=Polyketide cyclase/dehydrase and lipid transport superfamily protein; conf_class=2; computational_description=Polyketide cyclase/dehydrase and lipid transport superfamily protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: response to biotic stimulus%2C defense response%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: seed%3B CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916)%3B BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT1G14930.1)%3B Has 414 Blast hits to 387 proteins in 49 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 414%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12952558, PMID:14682612, PMID:15047896, PMID:15634198, PMID:16024587, PMID:16504176, PMID:16679420, PMID:17028149, locus:2006812; locus_type=protein_coding
AT1G14960.1	chr1:005159334	0.0	C/5159334-5159608,5159806-5159992	AT1G14960.1 CDS AT1G14960 ID=AT1G14960.1; Parent=AT1G14960; Name=AT1G14960.1; Note=Polyketide cyclase/dehydrase and lipid transport superfamily protein; conf_class=2; computational_description=Polyketide cyclase/dehydrase and lipid transport superfamily protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: response to biotic stimulus%2C defense response%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: root%3B CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916)%3B BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT1G14950.1)%3B Has 368 Blast hits to 339 proteins in 42 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 368%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12952558, PMID:14551330, PMID:15247402, PMID:15634198, PMID:15695462, PMID:16998091, PMID:17061125, locus:2006832; locus_type=protein_coding
AT1G14970.1	chr1:005162085	0.0	C/5162085-5162235,5162329-5162519,5162596-5162763,5162974-5163141,5163269-5163473,5163606-5163803,5163902-5163990,5164106-5164173,5164278-5164347,5164537-5164917	AT1G14970.1 CDS AT1G14970 ID=AT1G14970.1; Parent=AT1G14970; Name=AT1G14970.1; Note=O-fucosyltransferase family protein; conf_class=2; computational_description=O-fucosyltransferase family protein%3B CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378)%3B BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT2G01480.1)%3B Has 831 Blast hits to 817 proteins in 28 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 831%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15371352, PMID:20736450, locus:2006852; locus_type=protein_coding
AT1G14970.2	chr1:005162085	0.0	C/5162085-5162235,5162329-5162519,5162596-5162763,5162974-5163141,5163269-5163473,5163606-5163803,5163902-5163990,5164106-5164173,5164278-5164368	AT1G14970.2 CDS AT1G14970 ID=AT1G14970.2; Parent=AT1G14970; Name=AT1G14970.2; Note=O-fucosyltransferase family protein; computational_description=O-fucosyltransferase family protein%3B CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378)%3B BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT2G01480.1)%3B Has 831 Blast hits to 817 proteins in 28 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 831%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=PMID:15371352, PMID:20736450, locus:2006852; locus_type=protein_coding
AT1G14970.3	chr1:005162085	0.0	C/5162085-5162235,5162329-5162519,5162596-5162763,5162974-5163141,5163269-5163473,5163606-5163803,5163902-5163990,5164106-5164173,5164278-5164290	AT1G14970.3 CDS AT1G14970 ID=AT1G14970.3; Parent=AT1G14970; Name=AT1G14970.3; Note=O-fucosyltransferase family protein; computational_description=O-fucosyltransferase family protein%3B CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378)%3B BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT2G01480.1)%3B Has 831 Blast hits to 817 proteins in 28 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 831%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=PMID:15371352, PMID:20736450, locus:2006852; locus_type=protein_coding
AT1G14980.1	chr1:005165930	0.0	C/5165930-5165981,5166324-5166463,5166550-5166654	AT1G14980.1 CDS AT1G14980 ID=AT1G14980.1; Parent=AT1G14980; Name=AT1G14980.1; Note=chaperonin 10; curator_summary=Encodes mitochondrial-localized chaperonin 10 that complements the E.coli groES mutant. Its mRNA is upregulated in response to heat shock treatment and is expressed uniformly in various organs.; conf_class=2; symbol=CPN10; full_name=chaperonin 10; computational_description=chaperonin 10 (CPN10)%3B FUNCTIONS IN: copper ion binding%2C chaperone binding%3B INVOLVED IN: protein folding%2C response to heat%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Chaperonin Cpn10 (InterPro:IPR020818)%2C GroES-like (InterPro:IPR011032)%2C Chaperonin Cpn10%2C conserved site (InterPro:IPR018369)%2C Chaperonin Cpn10%2C subgroup (InterPro:IPR001476)%3B BEST Arabidopsis thaliana protein match is: GroES-like family protein (TAIR:AT1G23100.1)%3B Has 9195 Blast hits to 9085 proteins in 2839 species: Archae - 7%3B Bacteria - 6160%3B Metazoa - 328%3B Fungi - 119%3B Plants - 343%3B Viruses - 2%3B Other Eukaryotes - 2236 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9011092, PMID:12492832, PMID:14671022, PMID:18684336, PMID:19031045, PMID:17178727, PMID:20018591, PMID:22518837, PMID:23783410, locus:2196189; locus_type=protein_coding
AT1G14980.2	chr1:005166236	0.0	C/5166236-5166239,5166324-5166463,5166550-5166654	AT1G14980.2 CDS AT1G14980 ID=AT1G14980.2; Parent=AT1G14980; Name=AT1G14980.2; Note=chaperonin 10; symbol=CPN10; full_name=chaperonin 10; curator_summary=Encodes mitochondrial-localized chaperonin 10 that complements the E.coli groES mutant. Its mRNA is upregulated in response to heat shock treatment and is expressed uniformly in various organs.; computational_description=chaperonin 10 (CPN10)%3B FUNCTIONS IN: copper ion binding%2C chaperone binding%3B INVOLVED IN: protein folding%2C response to heat%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Chaperonin Cpn10 (InterPro:IPR020818)%2C GroES-like (InterPro:IPR011032)%2C Chaperonin Cpn10%2C conserved site (InterPro:IPR018369)%2C Chaperonin Cpn10%2C subgroup (InterPro:IPR001476)%3B BEST Arabidopsis thaliana protein match is: GroES-like family protein (TAIR:AT1G23100.1)%3B Has 9195 Blast hits to 9085 proteins in 2839 species: Archae - 7%3B Bacteria - 6160%3B Metazoa - 328%3B Fungi - 119%3B Plants - 343%3B Viruses - 2%3B Other Eukaryotes - 2236 (source: NCBI BLink).; Dbxref=PMID:9011092, PMID:12492832, PMID:14671022, PMID:18684336, PMID:19031045, PMID:17178727, PMID:20018591, PMID:22518837, PMID:23783410, locus:2196189; locus_type=protein_coding
AT1G14990.1	chr1:005167354	0.0	C/5167354-5167404,5167586-5167702,5167798-5167879,5168033-5168151	AT1G14990.1 CDS AT1G14990 ID=AT1G14990.1; Parent=AT1G14990; Name=AT1G14990.1; Note=transmembrane protein; conf_class=2; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B Has 34 Blast hits to 34 proteins in 12 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 34%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2196194; locus_type=protein_coding
AT1G14990.2	chr1:005167354	0.0	C/5167354-5167404,5167495-5167524,5167586-5167702,5167798-5167879,5168033-5168151	AT1G14990.2 CDS AT1G14990 ID=AT1G14990.2; Parent=AT1G14990; Name=AT1G14990.2; Note=transmembrane protein; conf_class=6; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B Has 34 Blast hits to 34 proteins in 12 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 34%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=**; Dbxref=locus:2196194; locus_type=protein_coding
AT1G15002.1	chr1:005168516	0.0	C/5168516-5170571	AT1G15002.1 antisense_lncRNA AT1G15002 ID=AT1G15002.1; Parent=AT1G15002; curator_summary=Potential natural antisense gene%2C locus overlaps with AT1G15000; Dbxref=locus:6530298138; Name=AT1G15002.1; description=Natural antisense transcript overlaps with AT1G15000; Note=Natural antisense transcript overlaps with AT1G15000; locus_type=antisense_long_noncoding_rna
AT1G15000.1	chr1:005168613	0.0	W/5168613-5169947	AT1G15000.1 CDS AT1G15000 ID=AT1G15000.1; Parent=AT1G15000; Name=AT1G15000.1; Note=serine carboxypeptidase-like 50; conf_class=1; symbol=scpl50; full_name=serine carboxypeptidase-like 50; computational_description=serine carboxypeptidase-like 50 (scpl50)%3B FUNCTIONS IN: serine-type carboxypeptidase activity%3B INVOLVED IN: proteolysis%3B LOCATED IN: vacuole%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase S10%2C serine carboxypeptidase (InterPro:IPR001563)%2C Peptidase S10%2C serine carboxypeptidase%2C active site (InterPro:IPR018202)%3B BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 47 (TAIR:AT5G22980.1)%3B Has 3616 Blast hits to 3489 proteins in 407 species: Archae - 0%3B Bacteria - 288%3B Metazoa - 703%3B Fungi - 860%3B Plants - 1378%3B Viruses - 0%3B Other Eukaryotes - 387 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15546358, PMID:15539469, PMID:15908604, PMID:18571878, PMID:18650403, locus:2196199; locus_type=protein_coding
AT1G05137.1	chr1:005170210	0.0	C/5170210-5170307	AT1G05137.1 snoRNA AT1G05137 ID=AT1G05137.1; Parent=AT1G05137; Name=AT1G05137.1; Alias=AtsnoR92; Dbxref=PMID:12520043, PMID:22820990; locus_type=small_nucleolar_rna
AT1G15010.1	chr1:005171215	0.0	W/5171215-5171643	AT1G15010.1 CDS AT1G15010 ID=AT1G15010.1; Parent=AT1G15010; Name=AT1G15010.1; Note=mediator of RNA polymerase II transcription subunit; conf_class=1; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01300.1)%3B Has 71 Blast hits to 71 proteins in 13 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 0%3B Fungi - 0%3B Plants - 69%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14966217, PMID:16792696, PMID:17189287, PMID:18775970, PMID:19656045, locus:2196204; locus_type=protein_coding
AT1G15015.1	chr1:005172340	0.0	W/5172340-5172822	AT1G15015.1 CDS AT1G15015 ID=AT1G15015.1; Parent=AT1G15015; Name=AT1G15015.1; Note=F-box family protein; conf_class=1; computational_description=F-box family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%3B BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT2G34280.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:4515102535; locus_type=protein_coding
AT1G15020.1	chr1:005173246	0.0	C/5173246-5173267,5173441-5173872,5173945-5174091,5174180-5174220,5174315-5174459,5174545-5174621,5174703-5174771,5174867-5174930,5175100-5175281,5175464-5175556,5175639-5175663,5175894-5176105	AT1G15020.1 CDS AT1G15020 ID=AT1G15020.1; Parent=AT1G15020; Name=AT1G15020.1; Note=quiescin-sulfhydryl oxidase 1; curator_summary=Encodes a protein disulfide isomerase-like (PDIL) protein%2C a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the quiescin-sulfhydryl oxidase (QSOX) family%2C which possess an Erv1-like domain at the COOH terminus in addition to a TRX domain.; conf_class=4; symbol=QSOX1; Alias=ATQSOX1, quiescin-sulfhydryl oxidase 1, QSO2; full_name=quiescin-sulfhydryl oxidase 1; computational_description=quiescin-sulfhydryl oxidase 1 (QSOX1)%3B FUNCTIONS IN: thiol oxidase activity%2C zinc ion binding%3B INVOLVED IN: response to cation stress%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C Erv1/Alr (InterPro:IPR006863)%2C Thioredoxin domain (InterPro:IPR013766)%2C Thioredoxin%2C conserved site (InterPro:IPR017937)%2C ERV/ALR sulphydryl oxidase (InterPro:IPR017905)%2C Thioredoxin-like (InterPro:IPR017936)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B BEST Arabidopsis thaliana protein match is: quiescin-sulfhydryl oxidase 2 (TAIR:AT2G01270.1)%3B Has 2363 Blast hits to 1967 proteins in 298 species: Archae - 18%3B Bacteria - 44%3B Metazoa - 1234%3B Fungi - 321%3B Plants - 442%3B Viruses - 0%3B Other Eukaryotes - 304 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:15684019, PMID:15978049, PMID:17568770, PMID:18775970, PMID:20226671, PMID:22995285, PMID:23068612, locus:2196209; locus_type=protein_coding
AT1G15020.3	chr1:005173246	0.0	C/5173246-5173267,5173441-5173872,5173945-5174091,5174180-5174220,5174315-5174459,5174545-5174621,5174703-5174771,5174867-5174930,5175100-5175281,5175464-5175556,5175639-5175663,5175894-5176105	AT1G15020.3 CDS AT1G15020 ID=AT1G15020.3; Parent=AT1G15020; Name=AT1G15020.3; Note=quiescin-sulfhydryl oxidase 1; symbol=QSOX1; Alias=ATQSOX1, quiescin-sulfhydryl oxidase 1, QSO2; full_name=quiescin-sulfhydryl oxidase 1; Dbxref=PMID:15684019, PMID:15978049, PMID:17568770, PMID:18775970, PMID:20226671, PMID:22995285, PMID:23068612, locus:2196209; curator_summary=Encodes a protein disulfide isomerase-like (PDIL) protein%2C a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the quiescin-sulfhydryl oxidase (QSOX) family%2C which possess an Erv1-like domain at the COOH terminus in addition to a TRX domain.; computational_description=quiescin-sulfhydryl oxidase 1 (QSOX1)%3B FUNCTIONS IN: thiol oxidase activity%2C zinc ion binding%3B INVOLVED IN: response to cation stress%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C Erv1/Alr (InterPro:IPR006863)%2C Thioredoxin domain (InterPro:IPR013766)%2C Thioredoxin%2C conserved site (InterPro:IPR017937)%2C ERV/ALR sulphydryl oxidase (InterPro:IPR017905)%2C Thioredoxin-like (InterPro:IPR017936)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B BEST Arabidopsis thaliana protein match is: quiescin-sulfhydryl oxidase 2 (TAIR:AT2G01270.1)%3B Has 2363 Blast hits to 1967 proteins in 298 species: Archae - 18%3B Bacteria - 44%3B Metazoa - 1234%3B Fungi - 321%3B Plants - 442%3B Viruses - 0%3B Other Eukaryotes - 304 (source: NCBI BLink).; locus_type=protein_coding
AT1G15020.2	chr1:005173341	0.0	C/5173341-5173872,5173945-5174091,5174180-5174220,5174315-5174459,5174545-5174621,5174703-5174771,5174867-5174930,5175100-5175281,5175464-5175556,5175639-5175663,5175894-5176105	AT1G15020.2 CDS AT1G15020 ID=AT1G15020.2; Parent=AT1G15020; Name=AT1G15020.2; Note=quiescin-sulfhydryl oxidase 1; curator_summary=Encodes a protein disulfide isomerase-like (PDIL) protein%2C a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the quiescin-sulfhydryl oxidase (QSOX) family%2C which possess an Erv1-like domain at the COOH terminus in addition to a TRX domain.; conf_class=2; symbol=QSOX1; Alias=ATQSOX1, quiescin-sulfhydryl oxidase 1, QSO2; full_name=quiescin-sulfhydryl oxidase 1; computational_description=quiescin-sulfhydryl oxidase 1 (QSOX1)%3B FUNCTIONS IN: thiol oxidase activity%2C zinc ion binding%3B INVOLVED IN: response to cation stress%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C Erv1/Alr (InterPro:IPR006863)%2C Thioredoxin domain (InterPro:IPR013766)%2C Thioredoxin%2C conserved site (InterPro:IPR017937)%2C ERV/ALR sulphydryl oxidase (InterPro:IPR017905)%2C Thioredoxin-like (InterPro:IPR017936)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B BEST Arabidopsis thaliana protein match is: quiescin-sulfhydryl oxidase 2 (TAIR:AT2G01270.1)%3B Has 2363 Blast hits to 1967 proteins in 298 species: Archae - 18%3B Bacteria - 44%3B Metazoa - 1234%3B Fungi - 321%3B Plants - 442%3B Viruses - 0%3B Other Eukaryotes - 304 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15684019, PMID:15978049, PMID:17568770, PMID:18775970, PMID:20226671, PMID:22995285, PMID:23068612, locus:2196209; locus_type=protein_coding
AT1G15030.1	chr1:005177895	0.0	W/5177895-5178095,5178177-5178400,5178512-5178761,5179208-5179293,5179379-5179470,5179624-5179853	AT1G15030.1 CDS AT1G15030 ID=AT1G15030.1; Parent=AT1G15030; Name=AT1G15030.1; Note=hypothetical protein (DUF789); curator_summary=Encodes a Cysteine-rich peptide (CRP) family protein; conf_class=2; computational_description=Protein of unknown function (DUF789)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF789 (InterPro:IPR008507)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF789) (TAIR:AT2G01260.1)%3B Has 315 Blast hits to 313 proteins in 19 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 2%3B Plants - 311%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17568770, locus:2196214; locus_type=protein_coding
AT1G15030.2	chr1:005177895	0.0	W/5177895-5178095,5178177-5178400,5178512-5178761,5179208-5179293,5179379-5179496	AT1G15030.2 CDS AT1G15030 ID=AT1G15030.2; Parent=AT1G15030; Name=AT1G15030.2; Note=hypothetical protein (DUF789); curator_summary=Encodes a Cysteine-rich peptide (CRP) family protein; computational_description=Protein of unknown function (DUF789)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF789 (InterPro:IPR008507)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF789) (TAIR:AT2G01260.1)%3B Has 315 Blast hits to 313 proteins in 19 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 2%3B Plants - 311%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; Dbxref=PMID:17568770, locus:2196214; locus_type=protein_coding
AT1G05143.1	chr1:005178738	0.0	C/5178738-5179002	AT1G05143.1 antisense_lncRNA AT1G05143 ID=AT1G05143.1; Parent=AT1G05143; Name=AT1G05143.1; description=Natural antisense transcript overlaps with AT1G15030; Note=Natural antisense transcript overlaps with AT1G15030; locus_type=antisense_long_noncoding_rna
AT1G15040.1	chr1:005180038	0.0	C/5180038-5180304,5180395-5181315	AT1G15040.1 CDS AT1G15040 ID=AT1G15040.1; Parent=AT1G15040; Name=AT1G15040.1; Note=Class I glutamine amidotransferase-like superfamily protein; curator_summary=Encodes a nitrogen regulated putative glutamine amidotransferase that represses shoot branching.; conf_class=2; symbol=GAT1_2.1; Alias=GAT, glutamine amidotransferase; full_name=glutamine amidotransferase 1_2.1; computational_description=Class I glutamine amidotransferase-like superfamily protein%3B FUNCTIONS IN: hydrolase activity%3B INVOLVED IN: glutamine metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: hypocotyl%2C root%3B CONTAINS InterPro DOMAIN/s: Peptidase C26 (InterPro:IPR011697)%2C Glutamine amidotransferase type 1 (InterPro:IPR017926)%3B BEST Arabidopsis thaliana protein match is: Class I glutamine amidotransferase-like superfamily protein (TAIR:AT1G66860.1)%3B Has 3704 Blast hits to 3700 proteins in 1207 species: Archae - 28%3B Bacteria - 2948%3B Metazoa - 3%3B Fungi - 7%3B Plants - 53%3B Viruses - 0%3B Other Eukaryotes - 665 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15923328, PMID:17028338, PMID:18305208, PMID:18441224, PMID:18616834, PMID:22253603, PMID:22885937, locus:2196174; locus_type=protein_coding
AT1G15040.2	chr1:005180314	0.0	C/5180314-5181315	AT1G15040.2 CDS AT1G15040 ID=AT1G15040.2; Parent=AT1G15040; Name=AT1G15040.2; Note=Class I glutamine amidotransferase-like superfamily protein; curator_summary=Encodes a nitrogen regulated putative glutamine amidotransferase that represses shoot branching.; conf_class=1; symbol=GAT1_2.1; Alias=GAT, glutamine amidotransferase; full_name=glutamine amidotransferase 1_2.1; computational_description=Class I glutamine amidotransferase-like superfamily protein%3B FUNCTIONS IN: hydrolase activity%3B INVOLVED IN: glutamine metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: hypocotyl%2C root%3B CONTAINS InterPro DOMAIN/s: Peptidase C26 (InterPro:IPR011697)%2C Glutamine amidotransferase type 1 (InterPro:IPR017926)%3B BEST Arabidopsis thaliana protein match is: Class I glutamine amidotransferase-like superfamily protein (TAIR:AT1G66860.1)%3B Has 3704 Blast hits to 3700 proteins in 1207 species: Archae - 28%3B Bacteria - 2948%3B Metazoa - 3%3B Fungi - 7%3B Plants - 53%3B Viruses - 0%3B Other Eukaryotes - 665 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15923328, PMID:17028338, PMID:18305208, PMID:18441224, PMID:18616834, PMID:22253603, PMID:22885937, locus:2196174; locus_type=protein_coding
AT1G05147.1	chr1:005180695	0.0	W/5180695-5181247	AT1G05147.1 antisense_lncRNA AT1G05147 ID=AT1G05147.1; Parent=AT1G05147; Name=AT1G05147.1; description=Natural antisense transcript overlaps with AT1G15040; Note=Natural antisense transcript overlaps with AT1G15040; locus_type=antisense_long_noncoding_rna
AT1G15050.1	chr1:005182256	0.0	C/5182256-5182322,5182396-5182504,5182605-5182745,5182854-5183007,5183157-5183243	AT1G15050.1 CDS AT1G15050 ID=AT1G15050.1; Parent=AT1G15050; Name=AT1G15050.1; Note=indole-3-acetic acid inducible 34; curator_summary=Belongs to auxin inducible gene family.; conf_class=1; symbol=IAA34; full_name=indole-3-acetic acid inducible 34; computational_description=indole-3-acetic acid inducible 34 (IAA34)%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: response to auxin stimulus%3B LOCATED IN: nucleus%3B CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525)%2C AUX/IAA protein (InterPro:IPR003311)%3B BEST Arabidopsis thaliana protein match is: indole-3-acetic acid inducible 32 (TAIR:AT2G01200.2)%3B Has 1472 Blast hits to 1472 proteins in 65 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1472%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11118137, PMID:12036262, PMID:12626746, PMID:15247399, PMID:16489122, PMID:18180456, locus:2196184; locus_type=protein_coding
AT1G15050.2	chr1:005182256	0.0	C/5182256-5182322,5182396-5182504,5182605-5182745,5182854-5182998	AT1G15050.2 CDS AT1G15050 ID=AT1G15050.2; Parent=AT1G15050; Name=AT1G15050.2; Note=indole-3-acetic acid inducible 34; symbol=IAA34; full_name=indole-3-acetic acid inducible 34; curator_summary=Belongs to auxin inducible gene family.; computational_description=indole-3-acetic acid inducible 34 (IAA34)%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: response to auxin stimulus%3B LOCATED IN: nucleus%3B CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525)%2C AUX/IAA protein (InterPro:IPR003311)%3B BEST Arabidopsis thaliana protein match is: indole-3-acetic acid inducible 32 (TAIR:AT2G01200.2)%3B Has 1472 Blast hits to 1472 proteins in 65 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1472%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=PMID:11118137, PMID:12036262, PMID:12626746, PMID:15247399, PMID:16489122, PMID:18180456, locus:2196184; locus_type=protein_coding
AT1G15060.1	chr1:005184053	0.0	C/5184053-5184112,5184229-5184329,5184591-5184761,5184963-5185137,5185241-5185341,5185419-5185521,5185609-5186283,5186415-5186492,5186584-5186856	AT1G15060.1 CDS AT1G15060 ID=AT1G15060.1; Parent=AT1G15060; Name=AT1G15060.1; Note=alpha/beta hydrolase family protein; conf_class=3; computational_description=Uncharacterised conserved protein UCP031088%2C alpha/beta hydrolase%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP031088%2C alpha/beta hydrolase%2C At1g15070 (InterPro:IPR016969)%2C Alpha/beta hydrolase fold-1 (InterPro:IPR000073)%3B BEST Arabidopsis thaliana protein match is: Uncharacterised conserved protein UCP031088%2C alpha/beta hydrolase (TAIR:AT1G73750.1)%3B Has 177 Blast hits to 156 proteins in 44 species: Archae - 2%3B Bacteria - 72%3B Metazoa - 2%3B Fungi - 0%3B Plants - 90%3B Viruses - 0%3B Other Eukaryotes - 11 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, locus:2196179; locus_type=protein_coding
AT1G15060.3	chr1:005184053	0.0	C/5184053-5184112,5184229-5184329,5184591-5184761,5184963-5185137,5185241-5185341,5185419-5185521,5185609-5186283,5186415-5186492,5186584-5186856	AT1G15060.3 CDS AT1G15060 ID=AT1G15060.3; Parent=AT1G15060; Name=AT1G15060.3; Note=alpha/beta hydrolase family protein; Dbxref=PMID:18775970, locus:2196179; computational_description=Uncharacterised conserved protein UCP031088%2C alpha/beta hydrolase%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP031088%2C alpha/beta hydrolase%2C At1g15070 (InterPro:IPR016969)%2C Alpha/beta hydrolase fold-1 (InterPro:IPR000073)%3B BEST Arabidopsis thaliana protein match is: Uncharacterised conserved protein UCP031088%2C alpha/beta hydrolase (TAIR:AT1G73750.1)%3B Has 177 Blast hits to 156 proteins in 44 species: Archae - 2%3B Bacteria - 72%3B Metazoa - 2%3B Fungi - 0%3B Plants - 90%3B Viruses - 0%3B Other Eukaryotes - 11 (source: NCBI BLink).; locus_type=protein_coding
AT1G15060.2	chr1:005184955	0.0	C/5184955-5185137,5185241-5185341,5185419-5185521,5185609-5186283,5186415-5186492,5186584-5186856	AT1G15060.2 CDS AT1G15060 ID=AT1G15060.2; Parent=AT1G15060; Name=AT1G15060.2; Note=alpha/beta hydrolase family protein; computational_description=Uncharacterised conserved protein UCP031088%2C alpha/beta hydrolase%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP031088%2C alpha/beta hydrolase%2C At1g15070 (InterPro:IPR016969)%2C Alpha/beta hydrolase fold-1 (InterPro:IPR000073)%3B BEST Arabidopsis thaliana protein match is: Uncharacterised conserved protein UCP031088%2C alpha/beta hydrolase (TAIR:AT1G73750.1)%3B Has 177 Blast hits to 156 proteins in 44 species: Archae - 2%3B Bacteria - 72%3B Metazoa - 2%3B Fungi - 0%3B Plants - 90%3B Viruses - 0%3B Other Eukaryotes - 11 (source: NCBI BLink).; Dbxref=PMID:18775970, locus:2196179; locus_type=protein_coding
AT1G15080.1	chr1:005188080	0.0	W/5188080-5188295,5188384-5188471,5188560-5188669,5188748-5188841,5188923-5189111,5189205-5189264,5189361-5189476	AT1G15080.1 CDS AT1G15080 ID=AT1G15080.1; Parent=AT1G15080; Name=AT1G15080.1; Note=lipid phosphate phosphatase 2; curator_summary=Encodes phosphatidic acid phosphatase. Involved in ABA signaling. Functions as a negative regulator upstream of ABI4. Expressed during germination and seed development. Expressed overall in young seedlings%2C in roots%2C hypocotyls%2C and vascular cells of cotyledons and leaves of 10 day-old seedlings%2C in flower filaments and stem elongation zones. Not expressed in anthers%2C pollen nor petals.; conf_class=2; symbol=LPP2; Alias=ATLPP2, LIPID PHOSPHATE PHOSPHATASE 2, ATPAP2, PHOSPHATIDIC ACID PHOSPHATASE 2; full_name=lipid phosphate phosphatase 2; computational_description=lipid phosphate phosphatase 2 (LPP2)%3B FUNCTIONS IN: acid phosphatase activity%2C phosphatidate phosphatase activity%3B INVOLVED IN: abscisic acid mediated signaling pathway%3B LOCATED IN: plasma membrane%2C integral to plasma membrane%3B EXPRESSED IN: 14 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase%2C N-terminal (InterPro:IPR016118)%2C Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326)%3B BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.5)%3B Has 2086 Blast hits to 2081 proteins in 377 species: Archae - 13%3B Bacteria - 320%3B Metazoa - 928%3B Fungi - 399%3B Plants - 199%3B Viruses - 3%3B Other Eukaryotes - 224 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11278556, PMID:15466222, PMID:15960620, PMID:16244908, PMID:16720694, PMID:18028281, PMID:20736450, PMID:21277215, PMID:23505340, locus:2037758; locus_type=protein_coding
AT1G15090.1	chr1:005189687	0.0	C/5189687-5189760	AT1G15090.1 tRNA AT1G15090 ID=AT1G15090.1; Parent=AT1G15090; Note=tRNA-Asn; computational_description=tRNA-Asn (anticodon: GTT); Dbxref=PMID:8980477, PMID:23066098, PMID:8980477, locus:3691608; Name=AT1G15090.1; locus_type=pre_trna
AT1G05153.1	chr1:005191674	0.0	W/5191674-5192677	AT1G05153.1 lnc_RNA AT1G05153 ID=AT1G05153.1; Parent=AT1G05153; Name=AT1G05153.1; locus_type=long_noncoding_rna
AT1G15085.1	chr1:005192219	0.0	W/5192219-5192263,5192355-5192411,5192777-5192854	AT1G15085.1 CDS AT1G15085 ID=AT1G15085.1; Parent=AT1G15085; Name=AT1G15085.1; Note=hypothetical protein; locus_type=protein_coding
AT1G15100.1	chr1:005193703	0.0	C/5193703-5194170	AT1G15100.1 CDS AT1G15100 ID=AT1G15100.1; Parent=AT1G15100; Name=AT1G15100.1; Note=RING-H2 finger A2A; curator_summary=Encodes a putative RING-H2 finger protein RHA2a.; conf_class=1; symbol=RHA2A; full_name=RING-H2 finger A2A; computational_description=RING-H2 finger A2A (RHA2A)%3B FUNCTIONS IN: ubiquitin-protein ligase activity%2C zinc ion binding%3B INVOLVED IN: response to salt stress%2C positive regulation of abscisic acid mediated signaling pathway%2C regulation of response to osmotic stress%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: RING-H2 finger protein 2B (TAIR:AT2G01150.1)%3B Has 8620 Blast hits to 8597 proteins in 260 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2194%3B Fungi - 672%3B Plants - 4576%3B Viruses - 12%3B Other Eukaryotes - 1166 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:9781696, PMID:12062802, PMID:11983057, PMID:15144375, PMID:15644464, PMID:16258011, PMID:16367961, PMID:16500995, PMID:17885809, PMID:18650403, PMID:21478367, locus:2037683; locus_type=protein_coding
AT1TE16800	chr1:005194223	0.0	C/5194223-5194711	AT1TE16800 transposable_element AT1TE16800 ID=AT1TE16800; Name=AT1TE16800; Alias=ATREP19
AT1TE16810	chr1:005197905	0.0	W/5197905-5198865	AT1TE16810 transposable_element AT1TE16810 ID=AT1TE16810; Name=AT1TE16810; Alias=HELITRONY1E
AT1G15110.1	chr1:005199594	0.0	W/5199594-5199754,5199841-5199906,5200005-5200064,5200178-5200268,5200382-5200436,5200523-5200602,5200688-5200804,5200908-5200992,5201081-5201172,5201254-5201507,5201593-5201681,5201781-5201908	AT1G15110.1 CDS AT1G15110 ID=AT1G15110.1; Parent=AT1G15110; Name=AT1G15110.1; Note=phosphatidyl serine synthase family protein; curator_summary=PSS1 encodes a base-exchange-type Phosphatidylserine (PS) synthase. Mutant analysis revealed its role in pollen maturation.; conf_class=2; symbol=PSS1; Alias=AtPSS1; full_name=phosphatidylserine synthase 1; computational_description=phosphatidyl serine synthase family protein%3B FUNCTIONS IN: CDP-diacylglycerol-serine O-phosphatidyltransferase activity%3B INVOLVED IN: phosphatidylserine biosynthetic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Phosphatidyl serine synthase (InterPro:IPR004277)%3B Has 329 Blast hits to 325 proteins in 116 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 175%3B Fungi - 10%3B Plants - 65%3B Viruses - 0%3B Other Eukaryotes - 79 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16125897, PMID:17189343, PMID:21554450, PMID:23505340, PMID:23931744, locus:2037788; locus_type=protein_coding
AT1G15110.2	chr1:005199594	0.0	W/5199594-5199754,5199841-5199906,5200005-5200064,5200178-5200268,5200382-5200436,5200523-5200602,5200688-5200804,5200908-5200992,5201081-5201172,5201254-5201507,5201593-5201685,5201781-5201988	AT1G15110.2 CDS AT1G15110 ID=AT1G15110.2; Parent=AT1G15110; Name=AT1G15110.2; Note=phosphatidyl serine synthase family protein; curator_summary=PSS1 encodes a base-exchange-type Phosphatidylserine (PS) synthase. Mutant analysis revealed its role in pollen maturation.; conf_class=3; symbol=PSS1; Alias=AtPSS1; full_name=phosphatidylserine synthase 1; computational_description=phosphatidyl serine synthase family protein%3B FUNCTIONS IN: CDP-diacylglycerol-serine O-phosphatidyltransferase activity%3B INVOLVED IN: phosphatidylserine biosynthetic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Phosphatidyl serine synthase (InterPro:IPR004277)%3B Has 329 Blast hits to 325 proteins in 116 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 175%3B Fungi - 10%3B Plants - 65%3B Viruses - 0%3B Other Eukaryotes - 79 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16125897, PMID:17189343, PMID:21554450, PMID:23505340, PMID:23931744, locus:2037788; locus_type=protein_coding
AT1G15110.3	chr1:005199594	0.0	W/5199594-5199754,5199841-5199906,5200005-5200064,5200178-5200268,5200382-5200436,5200523-5200602,5200688-5200804,5200908-5200992,5201081-5201172,5201254-5201507,5201593-5201681,5201781-5201908	AT1G15110.3 CDS AT1G15110 ID=AT1G15110.3; Parent=AT1G15110; Name=AT1G15110.3; Note=phosphatidyl serine synthase family protein; symbol=PSS1; Alias=AtPSS1; full_name=phosphatidylserine synthase 1; Dbxref=PMID:16125897, PMID:17189343, PMID:21554450, PMID:23505340, PMID:23931744, locus:2037788; curator_summary=PSS1 encodes a base-exchange-type Phosphatidylserine (PS) synthase. Mutant analysis revealed its role in pollen maturation.; computational_description=phosphatidyl serine synthase family protein%3B FUNCTIONS IN: CDP-diacylglycerol-serine O-phosphatidyltransferase activity%3B INVOLVED IN: phosphatidylserine biosynthetic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Phosphatidyl serine synthase (InterPro:IPR004277)%3B Has 329 Blast hits to 325 proteins in 116 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 175%3B Fungi - 10%3B Plants - 65%3B Viruses - 0%3B Other Eukaryotes - 79 (source: NCBI BLink).; locus_type=protein_coding
AT1G15110.4	chr1:005199594	0.0	W/5199594-5199754,5199841-5199906,5200005-5200064,5200178-5200268,5200382-5200436,5200523-5200602,5200688-5200804,5200908-5200992,5201081-5201172,5201254-5201507,5201593-5201681,5201781-5201908	AT1G15110.4 CDS AT1G15110 ID=AT1G15110.4; Parent=AT1G15110; Name=AT1G15110.4; Note=phosphatidyl serine synthase family protein; symbol=PSS1; Alias=AtPSS1; full_name=phosphatidylserine synthase 1; Dbxref=PMID:16125897, PMID:17189343, PMID:21554450, PMID:23505340, PMID:23931744, locus:2037788; curator_summary=PSS1 encodes a base-exchange-type Phosphatidylserine (PS) synthase. Mutant analysis revealed its role in pollen maturation.; computational_description=phosphatidyl serine synthase family protein%3B FUNCTIONS IN: CDP-diacylglycerol-serine O-phosphatidyltransferase activity%3B INVOLVED IN: phosphatidylserine biosynthetic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Phosphatidyl serine synthase (InterPro:IPR004277)%3B Has 329 Blast hits to 325 proteins in 116 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 175%3B Fungi - 10%3B Plants - 65%3B Viruses - 0%3B Other Eukaryotes - 79 (source: NCBI BLink).; locus_type=protein_coding
AT1G15120.2	chr1:005202648	0.0	W/5202648-5202772,5202871-5202920,5203065-5203092,5203484-5203568,5203683-5203772,5203828-5203950	AT1G15120.2 CDS AT1G15120 ID=AT1G15120.2; Parent=AT1G15120; Name=AT1G15120.2; Note=Ubiquinol-cytochrome C reductase hinge protein; conf_class=6; computational_description=Ubiquinol-cytochrome C reductase hinge protein%3B FUNCTIONS IN: ubiquinol-cytochrome-c reductase activity%3B INVOLVED IN: mitochondrial electron transport%2C ubiquinol to cytochrome c%3B LOCATED IN: mitochondrion%2C mitochondrial respiratory chain complex III%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Ubiquinol-cytochrome C reductase hinge (InterPro:IPR003422)%3B BEST Arabidopsis thaliana protein match is: Ubiquinol-cytochrome C reductase hinge protein (TAIR:AT2G01090.2)%3B Has 410 Blast hits to 410 proteins in 137 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 210%3B Fungi - 51%3B Plants - 87%3B Viruses - 0%3B Other Eukaryotes - 62 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:12970493, PMID:15276431, PMID:15295017, PMID:15829605, PMID:16113211, PMID:17470057, PMID:18189341, PMID:18650403, PMID:18775970, locus:2037838; locus_type=protein_coding
AT1G15120.1	chr1:005203091	0.0	W/5203091-5203092,5203484-5203568,5203683-5203772,5203865-5203897	AT1G15120.1 CDS AT1G15120 ID=AT1G15120.1; Parent=AT1G15120; Name=AT1G15120.1; Note=Ubiquinol-cytochrome C reductase hinge protein; conf_class=2; computational_description=Ubiquinol-cytochrome C reductase hinge protein%3B FUNCTIONS IN: ubiquinol-cytochrome-c reductase activity%3B INVOLVED IN: mitochondrial electron transport%2C ubiquinol to cytochrome c%3B LOCATED IN: mitochondrion%2C mitochondrial respiratory chain complex III%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Ubiquinol-cytochrome C reductase hinge (InterPro:IPR003422)%3B BEST Arabidopsis thaliana protein match is: Ubiquinol-cytochrome C reductase hinge protein (TAIR:AT2G01090.2)%3B Has 410 Blast hits to 410 proteins in 137 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 210%3B Fungi - 51%3B Plants - 87%3B Viruses - 0%3B Other Eukaryotes - 62 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12970493, PMID:15276431, PMID:15295017, PMID:15829605, PMID:16113211, PMID:17470057, PMID:18189341, PMID:18650403, PMID:18775970, locus:2037838; locus_type=protein_coding
AT1G15125.1	chr1:005204625	0.0	W/5204625-5204675,5204758-5205049,5205126-5205490,5205565-5205912	AT1G15125.1 CDS AT1G15125 ID=AT1G15125.1; Parent=AT1G15125; Name=AT1G15125.1; Note=S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; conf_class=2; computational_description=S-adenosyl-L-methionine-dependent methyltransferases superfamily protein%3B FUNCTIONS IN: S-adenosylmethionine-dependent methyltransferase activity%2C methyltransferase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: SAM dependent carboxyl methyltransferase (InterPro:IPR005299)%3B BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT1G68040.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14617060, PMID:15371352, PMID:15565108, locus:504956193; locus_type=protein_coding
AT1G15125.2	chr1:005204625	0.0	W/5204625-5204675,5204758-5205049,5205126-5205529	AT1G15125.2 CDS AT1G15125 ID=AT1G15125.2; Parent=AT1G15125; Name=AT1G15125.2; Note=S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; computational_description=S-adenosyl-L-methionine-dependent methyltransferases superfamily protein%3B FUNCTIONS IN: S-adenosylmethionine-dependent methyltransferase activity%2C methyltransferase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: SAM dependent carboxyl methyltransferase (InterPro:IPR005299)%3B BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT1G68040.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=PMID:14617060, PMID:15371352, PMID:15565108, locus:504956193; locus_type=protein_coding
AT1G15130.1	chr1:005206217	0.0	C/5206217-5206687,5206851-5206954,5207144-5207192,5207379-5207519,5207618-5207686,5207781-5207870,5208084-5209034,5209183-5209848	AT1G15130.1 CDS AT1G15130 ID=AT1G15130.1; Parent=AT1G15130; Name=AT1G15130.1; Note=Endosomal targeting BRO1-like domain-containing protein; conf_class=2; computational_description=Endosomal targeting BRO1-like domain-containing protein%3B CONTAINS InterPro DOMAIN/s: BRO1 (InterPro:IPR004328)%3B Has 26948 Blast hits to 15985 proteins in 1003 species: Archae - 32%3B Bacteria - 2662%3B Metazoa - 9770%3B Fungi - 4642%3B Plants - 6039%3B Viruses - 612%3B Other Eukaryotes - 3191 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18650403, PMID:18775970, PMID:20687615, locus:2037693; locus_type=protein_coding
AT1G15140.1	chr1:005210403	0.0	C/5210403-5210465,5210549-5210629,5210714-5210809,5210972-5211071,5211590-5212137	AT1G15140.1 CDS AT1G15140 ID=AT1G15140.1; Parent=AT1G15140; Name=AT1G15140.1; Note=FAD/NAD(P)-binding oxidoreductase; conf_class=2; computational_description=FAD/NAD(P)-binding oxidoreductase%3B FUNCTIONS IN: oxidoreductase activity%2C copper ion binding%3B INVOLVED IN: oxidation reduction%3B LOCATED IN: thylakoid%2C chloroplast%2C chloroplast stroma%2C chloroplast envelope%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433)%2C Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927)%2C Oxidoreductase%2C FAD-binding domain (InterPro:IPR008333)%2C Riboflavin synthase-like beta-barrel (InterPro:IPR017938)%2C Phenol hydroxylase reductase (InterPro:IPR001221)%3B BEST Arabidopsis thaliana protein match is: ferredoxin-NADP(+)-oxidoreductase 2 (TAIR:AT1G20020.3)%3B Has 6042 Blast hits to 6042 proteins in 1578 species: Archae - 81%3B Bacteria - 4817%3B Metazoa - 13%3B Fungi - 213%3B Plants - 309%3B Viruses - 0%3B Other Eukaryotes - 609 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:18650403, PMID:18633119, PMID:18775970, PMID:20018591, PMID:24064926, locus:2037708; locus_type=protein_coding
AT1G15140.2	chr1:005210642	0.0	C/5210642-5210809,5210972-5211071,5211590-5212137	AT1G15140.2 CDS AT1G15140 ID=AT1G15140.2; Parent=AT1G15140; Name=AT1G15140.2; Note=FAD/NAD(P)-binding oxidoreductase; conf_class=2; computational_description=FAD/NAD(P)-binding oxidoreductase%3B FUNCTIONS IN: oxidoreductase activity%2C copper ion binding%3B INVOLVED IN: oxidation reduction%3B LOCATED IN: thylakoid%2C chloroplast%2C chloroplast stroma%2C chloroplast envelope%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433)%2C Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927)%2C Oxidoreductase%2C FAD-binding domain (InterPro:IPR008333)%2C Riboflavin synthase-like beta-barrel (InterPro:IPR017938)%2C Phenol hydroxylase reductase (InterPro:IPR001221)%3B BEST Arabidopsis thaliana protein match is: ferredoxin-NADP(+)-oxidoreductase 2 (TAIR:AT1G20020.3)%3B Has 6042 Blast hits to 6042 proteins in 1578 species: Archae - 81%3B Bacteria - 4817%3B Metazoa - 13%3B Fungi - 213%3B Plants - 309%3B Viruses - 0%3B Other Eukaryotes - 609 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:18650403, PMID:18633119, PMID:18775970, PMID:20018591, PMID:24064926, locus:2037708; locus_type=protein_coding
AT1G15140.3	chr1:005210642	0.0	C/5210642-5210809,5210972-5211071,5211590-5212137	AT1G15140.3 CDS AT1G15140 ID=AT1G15140.3; Parent=AT1G15140; Name=AT1G15140.3; Note=FAD/NAD(P)-binding oxidoreductase; conf_class=2; computational_description=FAD/NAD(P)-binding oxidoreductase%3B FUNCTIONS IN: oxidoreductase activity%2C copper ion binding%3B INVOLVED IN: oxidation reduction%3B LOCATED IN: thylakoid%2C chloroplast%2C chloroplast stroma%2C chloroplast envelope%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433)%2C Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927)%2C Oxidoreductase%2C FAD-binding domain (InterPro:IPR008333)%2C Riboflavin synthase-like beta-barrel (InterPro:IPR017938)%2C Phenol hydroxylase reductase (InterPro:IPR001221)%3B BEST Arabidopsis thaliana protein match is: ferredoxin-NADP(+)-oxidoreductase 2 (TAIR:AT1G20020.3)%3B Has 6042 Blast hits to 6042 proteins in 1578 species: Archae - 81%3B Bacteria - 4817%3B Metazoa - 13%3B Fungi - 213%3B Plants - 309%3B Viruses - 0%3B Other Eukaryotes - 609 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:18650403, PMID:18633119, PMID:18775970, PMID:20018591, PMID:24064926, locus:2037708; locus_type=protein_coding
AT1G15150.1	chr1:005212674	0.0	W/5212674-5212931,5213047-5213591,5213675-5213761,5213841-5213897,5213989-5214227,5214357-5214562,5214652-5214723	AT1G15150.1 CDS AT1G15150 ID=AT1G15150.1; Parent=AT1G15150; Name=AT1G15150.1; Note=MATE efflux family protein; conf_class=1; computational_description=MATE efflux family protein%3B FUNCTIONS IN: antiporter activity%2C drug transmembrane transporter activity%2C transporter activity%3B INVOLVED IN: drug transmembrane transport%2C transmembrane transport%3B LOCATED IN: membrane%3B CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521)%2C Multi antimicrobial extrusion protein MatE (InterPro:IPR002528)%3B BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G15160.1)%3B Has 8066 Blast hits to 8001 proteins in 1866 species: Archae - 126%3B Bacteria - 5341%3B Metazoa - 149%3B Fungi - 332%3B Plants - 1319%3B Viruses - 0%3B Other Eukaryotes - 799 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:17056621, PMID:20736450, locus:2037723; locus_type=protein_coding
AT1G15150.2	chr1:005213137	0.0	W/5213137-5213591,5213675-5213761,5213841-5213897,5213989-5214227,5214357-5214562,5214652-5214723	AT1G15150.2 CDS AT1G15150 ID=AT1G15150.2; Parent=AT1G15150; Name=AT1G15150.2; Note=MATE efflux family protein; computational_description=MATE efflux family protein%3B FUNCTIONS IN: antiporter activity%2C drug transmembrane transporter activity%2C transporter activity%3B INVOLVED IN: drug transmembrane transport%2C transmembrane transport%3B LOCATED IN: membrane%3B CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521)%2C Multi antimicrobial extrusion protein MatE (InterPro:IPR002528)%3B BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G15160.1)%3B Has 8066 Blast hits to 8001 proteins in 1866 species: Archae - 126%3B Bacteria - 5341%3B Metazoa - 149%3B Fungi - 332%3B Plants - 1319%3B Viruses - 0%3B Other Eukaryotes - 799 (source: NCBI BLink).; Dbxref=PMID:17056621, PMID:20736450, locus:2037723; locus_type=protein_coding
AT1G15160.1	chr1:005215475	0.0	W/5215475-5215732,5215848-5216392,5216472-5216558,5216638-5216694,5216798-5217036,5217170-5217375,5217474-5217545	AT1G15160.1 CDS AT1G15160 ID=AT1G15160.1; Parent=AT1G15160; Name=AT1G15160.1; Note=MATE efflux family protein; conf_class=6; computational_description=MATE efflux family protein%3B FUNCTIONS IN: antiporter activity%2C drug transmembrane transporter activity%2C transporter activity%3B INVOLVED IN: drug transmembrane transport%2C transmembrane transport%3B LOCATED IN: membrane%3B CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521)%2C Multi antimicrobial extrusion protein MatE (InterPro:IPR002528)%3B BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G15150.1)%3B Has 7342 Blast hits to 7269 proteins in 1785 species: Archae - 88%3B Bacteria - 4667%3B Metazoa - 149%3B Fungi - 332%3B Plants - 1329%3B Viruses - 0%3B Other Eukaryotes - 777 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:20032078, locus:2037848; locus_type=protein_coding
AT1G15165.1	chr1:005217719	0.0	C/5217719-5217980,5218117-5218259,5218521-5218627,5218743-5218911,5219298-5219328,5219552-5219711,5219950-5220067	AT1G15165.1 CDS AT1G15165 ID=AT1G15165.1; Parent=AT1G15165; Name=AT1G15165.1; Note=RING/FYVE/PHD zinc finger superfamily protein; conf_class=6; computational_description=RING/FYVE/PHD zinc finger superfamily protein%3B FUNCTIONS IN: ubiquitin-protein ligase activity%3B INVOLVED IN: protein ubiquitination%3B LOCATED IN: ubiquitin ligase complex%3B CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613)%3B BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G67530.2)%3B Has 427 Blast hits to 408 proteins in 25 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 1%3B Fungi - 0%3B Plants - 420%3B Viruses - 0%3B Other Eukaryotes - 4 (source: NCBI BLink).; conf_rating=**; Dbxref=locus:504956192; locus_type=protein_coding
AT1G15170.1	chr1:005220690	0.0	W/5220690-5220956,5221043-5221587,5221659-5221745,5221827-5221883,5221996-5222234,5222411-5222616,5222712-5222756	AT1G15170.1 CDS AT1G15170 ID=AT1G15170.1; Parent=AT1G15170; Name=AT1G15170.1; Note=MATE efflux family protein; conf_class=2; computational_description=MATE efflux family protein%3B FUNCTIONS IN: antiporter activity%2C drug transmembrane transporter activity%2C transporter activity%3B INVOLVED IN: drug transmembrane transport%2C transmembrane transport%3B LOCATED IN: chloroplast%2C membrane%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521)%2C Multi antimicrobial extrusion protein MatE (InterPro:IPR002528)%3B BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G15180.1)%3B Has 8903 Blast hits to 8835 proteins in 2013 species: Archae - 124%3B Bacteria - 6072%3B Metazoa - 149%3B Fungi - 330%3B Plants - 1330%3B Viruses - 0%3B Other Eukaryotes - 898 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:20736450, locus:2037858; locus_type=protein_coding
AT1G15170.2	chr1:005221133	0.0	W/5221133-5221587,5221659-5221745,5221827-5221883,5221996-5222234,5222411-5222616,5222712-5222756	AT1G15170.2 CDS AT1G15170 ID=AT1G15170.2; Parent=AT1G15170; Name=AT1G15170.2; Note=MATE efflux family protein; computational_description=MATE efflux family protein%3B FUNCTIONS IN: antiporter activity%2C drug transmembrane transporter activity%2C transporter activity%3B INVOLVED IN: drug transmembrane transport%2C transmembrane transport%3B LOCATED IN: chloroplast%2C membrane%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521)%2C Multi antimicrobial extrusion protein MatE (InterPro:IPR002528)%3B BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G15180.1)%3B Has 8903 Blast hits to 8835 proteins in 2013 species: Archae - 124%3B Bacteria - 6072%3B Metazoa - 149%3B Fungi - 330%3B Plants - 1330%3B Viruses - 0%3B Other Eukaryotes - 898 (source: NCBI BLink).; Dbxref=PMID:20736450, locus:2037858; locus_type=protein_coding
AT1G15175.1	chr1:005222729	0.0	C/5222729-5224055	AT1G15175.1 antisense_lncRNA AT1G15175 ID=AT1G15175.1; Parent=AT1G15175; curator_summary=Potential natural antisense gene%2C locus overlaps with AT1G15170; Dbxref=PMID:20032078, locus:4010713444; Name=AT1G15175.1; description=Natural antisense transcript overlaps with AT1G15170; Note=Natural antisense transcript overlaps with AT1G15170; locus_type=antisense_long_noncoding_rna
AT1G15175.2	chr1:005222729	0.0	C/5222729-5224143	AT1G15175.2 antisense_lncRNA AT1G15175 ID=AT1G15175.2; Parent=AT1G15175; Name=AT1G15175.2; description=Natural antisense transcript overlaps with AT1G15170; curator_summary=Potential natural antisense gene%2C locus overlaps with AT1G15170; Note=Natural antisense transcript overlaps with AT1G15170; Dbxref=PMID:20032078, locus:4010713444; locus_type=antisense_long_noncoding_rna
AT1G15175.3	chr1:005222729	0.0	C/5222729-5224143	AT1G15175.3 antisense_lncRNA AT1G15175 ID=AT1G15175.3; Parent=AT1G15175; Name=AT1G15175.3; description=Natural antisense transcript overlaps with AT1G15170; curator_summary=Potential natural antisense gene%2C locus overlaps with AT1G15170; Note=Natural antisense transcript overlaps with AT1G15170; Dbxref=PMID:20032078, locus:4010713444; locus_type=antisense_long_noncoding_rna
AT1G15180.1	chr1:005224452	0.0	W/5224452-5224721,5224826-5225370,5225448-5225534,5225614-5225670,5225766-5226004,5226186-5226391,5226487-5226531	AT1G15180.1 CDS AT1G15180 ID=AT1G15180.1; Parent=AT1G15180; Name=AT1G15180.1; Note=MATE efflux family protein; conf_class=2; computational_description=MATE efflux family protein%3B FUNCTIONS IN: antiporter activity%2C drug transmembrane transporter activity%2C transporter activity%3B INVOLVED IN: drug transmembrane transport%2C transmembrane transport%3B LOCATED IN: membrane%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521)%2C Multi antimicrobial extrusion protein MatE (InterPro:IPR002528)%3B BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G15170.1)%3B Has 7522 Blast hits to 7471 proteins in 1793 species: Archae - 118%3B Bacteria - 4822%3B Metazoa - 149%3B Fungi - 328%3B Plants - 1330%3B Viruses - 0%3B Other Eukaryotes - 775 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16941219, locus:2037868; locus_type=protein_coding
AT1G15180.2	chr1:005224916	0.0	W/5224916-5225370,5225448-5225534,5225614-5225670,5225766-5226391,5226487-5226494	AT1G15180.2 CDS AT1G15180 ID=AT1G15180.2; Parent=AT1G15180; Name=AT1G15180.2; Note=MATE efflux family protein; conf_class=2; computational_description=MATE efflux family protein%3B FUNCTIONS IN: antiporter activity%2C drug transmembrane transporter activity%2C transporter activity%3B INVOLVED IN: drug transmembrane transport%2C transmembrane transport%3B LOCATED IN: membrane%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521)%2C Multi antimicrobial extrusion protein MatE (InterPro:IPR002528)%3B BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G15170.1)%3B Has 7522 Blast hits to 7471 proteins in 1793 species: Archae - 118%3B Bacteria - 4822%3B Metazoa - 149%3B Fungi - 328%3B Plants - 1330%3B Viruses - 0%3B Other Eukaryotes - 775 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16941219, locus:2037868; locus_type=protein_coding
AT1G15190.1	chr1:005227275	0.0	W/5227275-5228021	AT1G15190.1 CDS AT1G15190 ID=AT1G15190.1; Parent=AT1G15190; Name=AT1G15190.1; Note=Fasciclin-like arabinogalactan family protein; conf_class=1; computational_description=Fasciclin-like arabinogalactan family protein%3B FUNCTIONS IN: molecular_function unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: flower%3B EXPRESSED DURING: petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782)%3B Has 106 Blast hits to 85 proteins in 8 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 106%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12177459, PMID:14645732, PMID:15235117, PMID:16244449, PMID:20202165, locus:2037873; locus_type=protein_coding
AT1G15200.1	chr1:005228477	0.0	C/5228477-5228881,5228967-5229051,5229346-5229446,5229546-5229629,5229979-5230050,5230172-5230288,5230374-5230541,5230623-5230688,5230765-5230860,5230940-5231017	AT1G15200.1 CDS AT1G15200 ID=AT1G15200.1; Parent=AT1G15200; Name=AT1G15200.1; Note=protein-protein interaction regulator family protein; conf_class=4; computational_description=protein-protein interaction regulator family protein%3B CONTAINS InterPro DOMAIN/s: Pinin/SDK/memA protein (InterPro:IPR006786)%3B Has 5330 Blast hits to 4034 proteins in 383 species: Archae - 10%3B Bacteria - 289%3B Metazoa - 2328%3B Fungi - 484%3B Plants - 229%3B Viruses - 50%3B Other Eukaryotes - 1940 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:14973164, PMID:17665211, locus:2037688; locus_type=protein_coding
AT1G15200.2	chr1:005228477	0.0	C/5228477-5228881,5228967-5229051,5229247-5229261,5229346-5229446,5229546-5229629,5229979-5230050,5230172-5230288,5230374-5230541,5230623-5230688,5230765-5230860,5230940-5231017	AT1G15200.2 CDS AT1G15200 ID=AT1G15200.2; Parent=AT1G15200; Name=AT1G15200.2; Note=protein-protein interaction regulator family protein; conf_class=6; computational_description=protein-protein interaction regulator family protein%3B CONTAINS InterPro DOMAIN/s: Pinin/SDK/memA protein (InterPro:IPR006786)%3B Has 5330 Blast hits to 4034 proteins in 383 species: Archae - 10%3B Bacteria - 289%3B Metazoa - 2328%3B Fungi - 484%3B Plants - 229%3B Viruses - 50%3B Other Eukaryotes - 1940 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:14973164, PMID:17665211, locus:2037688; locus_type=protein_coding
AT1G15200.3	chr1:005228477	0.0	C/5228477-5228881,5228967-5229051,5229128-5229268,5229346-5229446,5229546-5229629,5229979-5230050,5230172-5230288,5230374-5230541,5230623-5230688,5230765-5230860,5230940-5231017	AT1G15200.3 CDS AT1G15200 ID=AT1G15200.3; Parent=AT1G15200; Name=AT1G15200.3; Note=protein-protein interaction regulator family protein; conf_class=6; computational_description=protein-protein interaction regulator family protein%3B CONTAINS InterPro DOMAIN/s: Pinin/SDK/memA protein (InterPro:IPR006786)%3B Has 5330 Blast hits to 4034 proteins in 383 species: Archae - 10%3B Bacteria - 289%3B Metazoa - 2328%3B Fungi - 484%3B Plants - 229%3B Viruses - 50%3B Other Eukaryotes - 1940 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:14973164, PMID:17665211, locus:2037688; locus_type=protein_coding
AT1G15200.4	chr1:005228477	0.0	C/5228477-5228566,5228651-5228881,5228967-5229051,5229128-5229268,5229346-5229446,5229546-5229629,5229979-5230050,5230172-5230288,5230374-5230541,5230623-5230688,5230765-5230860,5230940-5231017	AT1G15200.4 CDS AT1G15200 ID=AT1G15200.4; Parent=AT1G15200; Name=AT1G15200.4; Note=protein-protein interaction regulator family protein; conf_class=6; computational_description=protein-protein interaction regulator family protein%3B CONTAINS InterPro DOMAIN/s: Pinin/SDK/memA protein (InterPro:IPR006786)%3B Has 5330 Blast hits to 4034 proteins in 383 species: Archae - 10%3B Bacteria - 289%3B Metazoa - 2328%3B Fungi - 484%3B Plants - 229%3B Viruses - 50%3B Other Eukaryotes - 1940 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:14973164, PMID:17665211, locus:2037688; locus_type=protein_coding
AT1G15210.1	chr1:005231552	0.0	C/5231552-5232479,5232568-5233409,5233493-5233599,5233690-5233761,5233834-5233987,5234080-5234949,5235039-5235431,5235527-5235657,5235742-5236573	AT1G15210.1 CDS AT1G15210 ID=AT1G15210.1; Parent=AT1G15210; Name=AT1G15210.1; Note=pleiotropic drug resistance 7; conf_class=3; symbol=ABCG35; Alias=ATPDR7, PLEIOTROPIC DRUG RESISTANCE 7, PDR7, pleiotropic drug resistance 7; full_name=ATP-binding cassette G35; computational_description=pleiotropic drug resistance 7 (PDR7)%3B FUNCTIONS IN: ATPase activity%2C coupled to transmembrane movement of substances%3B INVOLVED IN: drug transmembrane transport%3B LOCATED IN: plasma membrane%2C chloroplast%2C membrane%3B EXPRESSED IN: 9 plant structures%3B EXPRESSED DURING: 4 anthesis%2C F mature embryo stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C ABC transporter-like (InterPro:IPR003439)%2C Plant PDR ABC transporter associated (InterPro:IPR013581)%2C ABC-2 type transporter (InterPro:IPR013525)%3B BEST Arabidopsis thaliana protein match is: ABC-2 and Plant PDR ABC-type transporter family protein (TAIR:AT1G59870.1)%3B Has 383488 Blast hits to 290790 proteins in 4017 species: Archae - 7218%3B Bacteria - 309544%3B Metazoa - 9443%3B Fungi - 7090%3B Plants - 6323%3B Viruses - 4%3B Other Eukaryotes - 43866 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11346655, PMID:11855639, PMID:12376647, PMID:14576160, PMID:15028209, PMID:16415066, PMID:16506311, PMID:16618929, PMID:16581873, PMID:16720608, PMID:17164256, PMID:17432890, PMID:18065561, PMID:18299247, PMID:20736450, PMID:23383346, locus:2037703; locus_type=protein_coding
AT1G15215.1	chr1:005238096	0.0	W/5238096-5238149,5238229-5238314,5238474-5238519,5238609-5238777,5238855-5238915,5239182-5239257	AT1G15215.1 CDS AT1G15215 ID=AT1G15215.1; Parent=AT1G15215; Name=AT1G15215.1; Note=SAWADEE HOMEODOMAIN protein; curator_summary=Encodes SHH1%2C a homeodomain protein required for DNA methylation. It is an atypical RNA-directed DNA methylation component%2C and functions in transcriptional silencing through both DNA methylation-dependent and -independent pathways.; conf_class=2; symbol=SHH1; Alias=DTF1, DNA-binding transcription factor 1; full_name=SAWADEE homeodomain homolog 1; computational_description=BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors%3Bsequence-specific DNA binding (TAIR:AT3G18380.1)%3B Has 89 Blast hits to 86 proteins in 16 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 89%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:21811420, PMID:22064704, PMID:23637343, PMID:23636332, locus:1005716727; locus_type=protein_coding
AT1G15215.2	chr1:005238096	0.0	W/5238096-5238149,5238229-5238314,5238474-5238519,5238609-5238777,5238855-5238915,5239182-5239233,5239295-5239438,5239531-5239650,5239726-5239770	AT1G15215.2 CDS AT1G15215 ID=AT1G15215.2; Parent=AT1G15215; Name=AT1G15215.2; Note=SAWADEE HOMEODOMAIN protein; curator_summary=Encodes SHH1%2C a homeodomain protein required for DNA methylation. It is an atypical RNA-directed DNA methylation component%2C and functions in transcriptional silencing through both DNA methylation-dependent and -independent pathways.; conf_class=2; symbol=SHH1; Alias=DTF1, DNA-binding transcription factor 1; full_name=SAWADEE homeodomain homolog 1; computational_description=BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors%3Bsequence-specific DNA binding (TAIR:AT3G18380.1)%3B Has 89 Blast hits to 86 proteins in 16 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 89%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:21811420, PMID:22064704, PMID:23637343, PMID:23636332, locus:1005716727; locus_type=protein_coding
AT1G15215.3	chr1:005238096	0.0	W/5238096-5238149,5238229-5238314,5238474-5238519,5238609-5238777,5238855-5238915,5239182-5239233,5239295-5239438,5239531-5239650,5239715-5239741	AT1G15215.3 CDS AT1G15215 ID=AT1G15215.3; Parent=AT1G15215; Name=AT1G15215.3; Note=SAWADEE HOMEODOMAIN protein; curator_summary=Encodes SHH1%2C a homeodomain protein required for DNA methylation. It is an atypical RNA-directed DNA methylation component%2C and functions in transcriptional silencing through both DNA methylation-dependent and -independent pathways.; conf_class=2; symbol=SHH1; Alias=DTF1, DNA-binding transcription factor 1; full_name=SAWADEE homeodomain homolog 1; computational_description=BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors%3Bsequence-specific DNA binding (TAIR:AT3G18380.1)%3B Has 89 Blast hits to 86 proteins in 16 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 89%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:21811420, PMID:22064704, PMID:23637343, PMID:23636332, locus:1005716727; locus_type=protein_coding
AT1G15215.4	chr1:005238096	0.0	W/5238096-5238149,5238229-5238314,5238474-5238519,5238609-5238777,5238855-5238915,5239182-5239233,5239295-5239438,5239531-5239713	AT1G15215.4 CDS AT1G15215 ID=AT1G15215.4; Parent=AT1G15215; Name=AT1G15215.4; Note=SAWADEE HOMEODOMAIN protein; symbol=SHH1; Alias=DTF1, DNA-binding transcription factor 1; full_name=SAWADEE homeodomain homolog 1; curator_summary=Encodes SHH1%2C a homeodomain protein required for DNA methylation. It is an atypical RNA-directed DNA methylation component%2C and functions in transcriptional silencing through both DNA methylation-dependent and -independent pathways.; computational_description=BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors%3Bsequence-specific DNA binding (TAIR:AT3G18380.1)%3B Has 89 Blast hits to 86 proteins in 16 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 89%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=PMID:21811420, PMID:22064704, PMID:23637343, PMID:23636332, locus:1005716727; locus_type=protein_coding
AT1G15220.1	chr1:005240471	0.0	C/5240471-5240674,5240755-5240886,5240974-5241117	AT1G15220.1 CDS AT1G15220 ID=AT1G15220.1; Parent=AT1G15220; Name=AT1G15220.1; Note=cytochrome c biogenesis protein family; curator_summary=Encodes a protein with oxidoreductase activity present in the inner membrane of mitochondria. CCMH is postulated to play a central role in mitochondrial cytochrome c maturation%2C probably as part of a heme lyase complex that also holds activity of reducing apocytochrome c. CCMH interacts with apocytochrome AtCYTc-a and is shown to be present in a 500 kDa-complex along with CcmFN2.; conf_class=1; symbol=CCMH; computational_description=CCMH%3B CONTAINS InterPro DOMAIN/s: Cytochrome C biogenesis protein CcmH (InterPro:IPR005616)%3B Has 3193 Blast hits to 3193 proteins in 721 species: Archae - 0%3B Bacteria - 1884%3B Metazoa - 0%3B Fungi - 0%3B Plants - 31%3B Viruses - 0%3B Other Eukaryotes - 1278 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14671022, PMID:16236729, locus:2037718; locus_type=protein_coding
AT1G15220.2	chr1:005240471	0.0	C/5240471-5240674,5240755-5240886,5240974-5241117	AT1G15220.2 CDS AT1G15220 ID=AT1G15220.2; Parent=AT1G15220; Name=AT1G15220.2; Note=cytochrome c biogenesis protein family; curator_summary=Encodes a protein with oxidoreductase activity present in the inner membrane of mitochondria. CCMH is postulated to play a central role in mitochondrial cytochrome c maturation%2C probably as part of a heme lyase complex that also holds activity of reducing apocytochrome c. CCMH interacts with apocytochrome AtCYTc-a and is shown to be present in a 500 kDa-complex along with CcmFN2.; conf_class=1; symbol=CCMH; computational_description=CCMH%3B CONTAINS InterPro DOMAIN/s: Cytochrome C biogenesis protein CcmH (InterPro:IPR005616)%3B Has 3193 Blast hits to 3193 proteins in 721 species: Archae - 0%3B Bacteria - 1884%3B Metazoa - 0%3B Fungi - 0%3B Plants - 31%3B Viruses - 0%3B Other Eukaryotes - 1278 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14671022, PMID:16236729, locus:2037718; locus_type=protein_coding
AT1G15230.1	chr1:005242729	0.0	C/5242729-5243196	AT1G15230.1 CDS AT1G15230 ID=AT1G15230.1; Parent=AT1G15230; Name=AT1G15230.1; Note=hypothetical protein; conf_class=1; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B Has 26 Blast hits to 26 proteins in 12 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 26%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:17640338, PMID:18650403, PMID:18775970, locus:2037748; locus_type=protein_coding
AT1G15240.1	chr1:005243799	0.0	W/5243799-5243907,5244051-5244447,5244534-5244711,5244813-5244952,5245027-5246050,5246148-5246248,5246324-5246495	AT1G15240.1 CDS AT1G15240 ID=AT1G15240.1; Parent=AT1G15240; Name=AT1G15240.1; Note=phox (PX) domain-containing protein; conf_class=1; computational_description=Phox-associated domain%3BPhox-like%3BSorting nexin%2C C-terminal%3B CONTAINS InterPro DOMAIN/s: Phox-like (InterPro:IPR001683)%2C Phox-associated domain (InterPro:IPR003114)%3B BEST Arabidopsis thaliana protein match is: Phox-associated domain%3BPhox-like%3BSorting nexin%2C C-terminal (TAIR:AT2G15900.1)%3B Has 583 Blast hits to 560 proteins in 162 species: Archae - 0%3B Bacteria - 8%3B Metazoa - 268%3B Fungi - 113%3B Plants - 135%3B Viruses - 0%3B Other Eukaryotes - 59 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15358268, PMID:16951057, PMID:17351049, PMID:18493073, PMID:18545707, locus:2037753; locus_type=protein_coding
AT1G15240.2	chr1:005243799	0.0	W/5243799-5243907,5244051-5244447,5244534-5244711,5244813-5244952,5245027-5246050,5246148-5246248,5246324-5246468,5246929-5246997,5247073-5247118,5247198-5247487,5247584-5247663,5247765-5247900,5248075-5248201,5248302-5248384,5248467-5248604	AT1G15240.2 CDS AT1G15240 ID=AT1G15240.2; Parent=AT1G15240; Name=AT1G15240.2; Note=phox (PX) domain-containing protein; conf_class=2; computational_description=Phox-associated domain%3BPhox-like%3BSorting nexin%2C C-terminal%3B CONTAINS InterPro DOMAIN/s: Phox-like (InterPro:IPR001683)%2C Phox-associated domain (InterPro:IPR003114)%3B BEST Arabidopsis thaliana protein match is: Phox-associated domain%3BPhox-like%3BSorting nexin%2C C-terminal (TAIR:AT2G15900.1)%3B Has 583 Blast hits to 560 proteins in 162 species: Archae - 0%3B Bacteria - 8%3B Metazoa - 268%3B Fungi - 113%3B Plants - 135%3B Viruses - 0%3B Other Eukaryotes - 59 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15358268, PMID:16951057, PMID:17351049, PMID:18493073, PMID:18545707, locus:2037753; locus_type=protein_coding
AT1G15240.3	chr1:005243799	0.0	W/5243799-5243907,5244051-5244447,5244534-5244711,5244813-5244952,5245027-5246050,5246148-5246248,5246324-5246468,5246929-5246997,5247073-5247118,5247198-5247487,5247584-5247663,5247765-5247900,5248075-5248201,5248302-5248498	AT1G15240.3 CDS AT1G15240 ID=AT1G15240.3; Parent=AT1G15240; Name=AT1G15240.3; Note=phox (PX) domain-containing protein; conf_class=2; computational_description=Phox-associated domain%3BPhox-like%3BSorting nexin%2C C-terminal%3B CONTAINS InterPro DOMAIN/s: Phox-like (InterPro:IPR001683)%2C Phox-associated domain (InterPro:IPR003114)%3B BEST Arabidopsis thaliana protein match is: Phox-associated domain%3BPhox-like%3BSorting nexin%2C C-terminal (TAIR:AT2G15900.1)%3B Has 583 Blast hits to 560 proteins in 162 species: Archae - 0%3B Bacteria - 8%3B Metazoa - 268%3B Fungi - 113%3B Plants - 135%3B Viruses - 0%3B Other Eukaryotes - 59 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15358268, PMID:16951057, PMID:17351049, PMID:18493073, PMID:18545707, locus:2037753; locus_type=protein_coding
AT1G15240.4	chr1:005243799	0.0	W/5243799-5243907,5244051-5244447,5244534-5244711,5244813-5244952,5245027-5246050,5246148-5246248,5246324-5246495	AT1G15240.4 CDS AT1G15240 ID=AT1G15240.4; Parent=AT1G15240; Name=AT1G15240.4; Note=phox (PX) domain-containing protein; Dbxref=PMID:15358268, PMID:16951057, PMID:17351049, PMID:18493073, PMID:18545707, locus:2037753; computational_description=Phox-associated domain%3BPhox-like%3BSorting nexin%2C C-terminal%3B CONTAINS InterPro DOMAIN/s: Phox-like (InterPro:IPR001683)%2C Phox-associated domain (InterPro:IPR003114)%3B BEST Arabidopsis thaliana protein match is: Phox-associated domain%3BPhox-like%3BSorting nexin%2C C-terminal (TAIR:AT2G15900.1)%3B Has 583 Blast hits to 560 proteins in 162 species: Archae - 0%3B Bacteria - 8%3B Metazoa - 268%3B Fungi - 113%3B Plants - 135%3B Viruses - 0%3B Other Eukaryotes - 59 (source: NCBI BLink).; locus_type=protein_coding
AT1G15240.5	chr1:005243799	0.0	W/5243799-5243907,5244051-5244447,5244534-5244711,5244813-5244952,5245027-5246050,5246148-5246248,5246324-5246495	AT1G15240.5 CDS AT1G15240 ID=AT1G15240.5; Parent=AT1G15240; Name=AT1G15240.5; Note=phox (PX) domain-containing protein; Dbxref=PMID:15358268, PMID:16951057, PMID:17351049, PMID:18493073, PMID:18545707, locus:2037753; computational_description=Phox-associated domain%3BPhox-like%3BSorting nexin%2C C-terminal%3B CONTAINS InterPro DOMAIN/s: Phox-like (InterPro:IPR001683)%2C Phox-associated domain (InterPro:IPR003114)%3B BEST Arabidopsis thaliana protein match is: Phox-associated domain%3BPhox-like%3BSorting nexin%2C C-terminal (TAIR:AT2G15900.1)%3B Has 583 Blast hits to 560 proteins in 162 species: Archae - 0%3B Bacteria - 8%3B Metazoa - 268%3B Fungi - 113%3B Plants - 135%3B Viruses - 0%3B Other Eukaryotes - 59 (source: NCBI BLink).; locus_type=protein_coding
AT1G15250.1	chr1:005248825	0.0	C/5248825-5248871,5248961-5249062,5249169-5249304,5249379-5249381	AT1G15250.1 CDS AT1G15250 ID=AT1G15250.1; Parent=AT1G15250; Name=AT1G15250.1; Note=Zinc-binding ribosomal protein family protein; conf_class=2; computational_description=Zinc-binding ribosomal protein family protein%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%2C ribosome biogenesis%3B LOCATED IN: ribosome%2C cytosolic large ribosomal subunit%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L37e%2C conserved site (InterPro:IPR018267)%2C Ribosomal protein%2C zinc-binding domain (InterPro:IPR011332)%2C Ribosomal protein L37ae/L37e%2C N-terminal domain (InterPro:IPR011331)%2C Ribosomal protein L37e (InterPro:IPR001569)%3B BEST Arabidopsis thaliana protein match is: Zinc-binding ribosomal protein family protein (TAIR:AT3G16080.1)%3B Has 993 Blast hits to 993 proteins in 346 species: Archae - 293%3B Bacteria - 0%3B Metazoa - 305%3B Fungi - 141%3B Plants - 122%3B Viruses - 0%3B Other Eukaryotes - 132 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11598216, PMID:15695462, PMID:17934214, PMID:18650403, PMID:20736450, locus:2037833; locus_type=protein_coding
AT1G15250.2	chr1:005248825	0.0	C/5248825-5248871,5248961-5249062,5249169-5249304,5249379-5249381	AT1G15250.2 CDS AT1G15250 ID=AT1G15250.2; Parent=AT1G15250; Name=AT1G15250.2; Note=Zinc-binding ribosomal protein family protein; Dbxref=PMID:11598216, PMID:15695462, PMID:17934214, PMID:18650403, PMID:20736450, locus:2037833; computational_description=Zinc-binding ribosomal protein family protein%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%2C ribosome biogenesis%3B LOCATED IN: ribosome%2C cytosolic large ribosomal subunit%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L37e%2C conserved site (InterPro:IPR018267)%2C Ribosomal protein%2C zinc-binding domain (InterPro:IPR011332)%2C Ribosomal protein L37ae/L37e%2C N-terminal domain (InterPro:IPR011331)%2C Ribosomal protein L37e (InterPro:IPR001569)%3B BEST Arabidopsis thaliana protein match is: Zinc-binding ribosomal protein family protein (TAIR:AT3G16080.1)%3B Has 993 Blast hits to 993 proteins in 346 species: Archae - 293%3B Bacteria - 0%3B Metazoa - 305%3B Fungi - 141%3B Plants - 122%3B Viruses - 0%3B Other Eukaryotes - 132 (source: NCBI BLink).; locus_type=protein_coding
AT1G15260.1	chr1:005249834	0.0	W/5249834-5250370	AT1G15260.1 CDS AT1G15260 ID=AT1G15260.1; Parent=AT1G15260; Name=AT1G15260.1; Note=LOW protein: ATP-dependent RNA helicase-like protein; conf_class=1; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G16070.1)%3B Has 28 Blast hits to 28 proteins in 7 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 28%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12509532, PMID:18650403, locus:2037763; locus_type=protein_coding
AT1G15270.1	chr1:005250833	0.0	C/5250833-5250913,5251450-5251491,5251845-5251900,5252005-5252020	AT1G15270.1 CDS AT1G15270 ID=AT1G15270.1; Parent=AT1G15270; Name=AT1G15270.1; Note=Translation machinery associated TMA7; conf_class=2; computational_description=Translation machinery associated TMA7%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Translation machinery associated TMA7 (InterPro:IPR015157)%3B BEST Arabidopsis thaliana protein match is: Translation machinery associated TMA7 (TAIR:AT3G16040.1)%3B Has 377 Blast hits to 377 proteins in 132 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 200%3B Fungi - 86%3B Plants - 64%3B Viruses - 0%3B Other Eukaryotes - 27 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12969430, PMID:15546358, PMID:18650403, PMID:18775970, locus:2037768; locus_type=protein_coding
AT1G15280.1	chr1:005252538	0.0	W/5252538-5252935,5253288-5253387,5253549-5253751,5253831-5254525,5254734-5254836,5255182-5255292,5255470-5255525,5255840-5255900,5256187-5256214	AT1G15280.1 CDS AT1G15280 ID=AT1G15280.1; Parent=AT1G15280; Name=AT1G15280.1; Note=CASC3/Barentsz eIF4AIII binding protein; conf_class=2; computational_description=CASC3/Barentsz eIF4AIII binding%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cytosol%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: CASC3/Barentsz eIF4AIII binding (InterPro:IPR018545)%3B BEST Arabidopsis thaliana protein match is: CASC3/Barentsz eIF4AIII binding (TAIR:AT1G80000.2)%3B Has 4070 Blast hits to 2291 proteins in 306 species: Archae - 2%3B Bacteria - 223%3B Metazoa - 1249%3B Fungi - 308%3B Plants - 219%3B Viruses - 71%3B Other Eukaryotes - 1998 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18433157, locus:2037773; locus_type=protein_coding
AT1G15280.2	chr1:005252538	0.0	W/5252538-5252935,5253288-5253387,5253546-5253751,5253831-5254525,5254734-5254836,5255182-5255292,5255470-5255525,5255840-5255900,5256187-5256214	AT1G15280.2 CDS AT1G15280 ID=AT1G15280.2; Parent=AT1G15280; Name=AT1G15280.2; Note=CASC3/Barentsz eIF4AIII binding protein; conf_class=2; computational_description=CASC3/Barentsz eIF4AIII binding%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cytosol%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: CASC3/Barentsz eIF4AIII binding (InterPro:IPR018545)%3B BEST Arabidopsis thaliana protein match is: CASC3/Barentsz eIF4AIII binding (TAIR:AT1G80000.2)%3B Has 4070 Blast hits to 2291 proteins in 306 species: Archae - 2%3B Bacteria - 223%3B Metazoa - 1249%3B Fungi - 308%3B Plants - 219%3B Viruses - 71%3B Other Eukaryotes - 1998 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18433157, locus:2037773; locus_type=protein_coding
AT1G15290.1	chr1:005257327	0.0	C/5257327-5258784,5259090-5259171,5259253-5259365,5259498-5259629,5259707-5259890,5260077-5260210,5260358-5260462,5260549-5260650,5260786-5260878,5260949-5261266,5261435-5261536,5261623-5261685,5261815-5262301,5262580-5262734,5262945-5263466,5263555-5263596,5263688-5263884,5263968-5264198,5264420-5264492,5264581-5264814	AT1G15290.1 CDS AT1G15290 ID=AT1G15290.1; Parent=AT1G15290; Name=AT1G15290.1; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; conf_class=2; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B FUNCTIONS IN: binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990)%2C Tetratricopeptide repeat-containing (InterPro:IPR013026)%2C Tetratricopeptide repeat (InterPro:IPR019734)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G28080.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18650403, locus:2037783; locus_type=protein_coding
AT1G15290.2	chr1:005258091	0.0	C/5258091-5258137,5258208-5258784,5259090-5259171,5259253-5259365,5259498-5259629,5259707-5259890,5260077-5260210,5260358-5260462,5260549-5260650,5260786-5260878,5260949-5261266,5261435-5261536,5261623-5261685,5261815-5262301,5262580-5262734,5262945-5263466,5263555-5263596,5263688-5263884,5263968-5264198,5264420-5264492,5264581-5264814	AT1G15290.2 CDS AT1G15290 ID=AT1G15290.2; Parent=AT1G15290; Name=AT1G15290.2; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B FUNCTIONS IN: binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990)%2C Tetratricopeptide repeat-containing (InterPro:IPR013026)%2C Tetratricopeptide repeat (InterPro:IPR019734)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G28080.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=PMID:18650403, locus:2037783; locus_type=protein_coding
AT1G15300.1	chr1:005265726	0.0	C/5265726-5268602	AT1G15300.1 CDS AT1G15300 ID=AT1G15300.1; Parent=AT1G15300; Name=AT1G15300.1; index=1; symbol=CYTOSLEEPER; full_name=CYTOSLEEPER; computational_description=hAT-like transposase family (hobo/Ac/Tam3)%2C has a 5.1e-59 P-value blast match to GB:CAA29005 ORFa of Maize Ac (hAT-element) (Zea mays); Dbxref=PMID:18650403, PMID:23067104, locus:2037793; Note=transposable_element_gene; locus_type=transposable_element_gene
AT1TE17030	chr1:005265726	0.0	C/5265726-5268602	AT1TE17030 transposable_element AT1TE17030 ID=AT1TE17030; Name=AT1TE17030; Alias=Unassigned
AT1G15310.1	chr1:005269173	0.0	C/5269173-5269456,5269534-5269648,5269723-5269877,5269993-5270093,5270206-5270354,5270436-5270586,5271282-5271435,5271532-5271631,5271717-5271947	AT1G15310.1 CDS AT1G15310 ID=AT1G15310.1; Parent=AT1G15310; Name=AT1G15310.1; Note=signal recognition particle 54 kDa subunit; curator_summary=54 kDa protein subunit of SRP that interacts with the signal peptide of secreted proteins; conf_class=2; symbol=ATHSRP54A; Alias=SRP54-1, SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT; full_name=signal recognition particle 54 kDa subunit; computational_description=signal recognition particle 54 kDa subunit (ATHSRP54A)%3B FUNCTIONS IN: 7S RNA binding%2C mRNA binding%2C nucleoside-triphosphatase activity%2C GTP binding%2C nucleotide binding%3B INVOLVED IN: SRP-dependent cotranslational protein targeting to membrane%2C signal sequence recognition%2C SRP-dependent cotranslational protein targeting to membrane%3B LOCATED IN: signal recognition particle%2C endoplasmic reticulum targeting%2C cytoplasm%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C Signal recognition particle%2C SRP54 subunit%2C helical bundle (InterPro:IPR013822)%2C Signal recognition particle%2C SRP54 subunit%2C M-domain (InterPro:IPR004125)%2C Signal recognition particle%2C SRP54 subunit%2C GTPase (InterPro:IPR000897)%2C Signal recognition particle%2C SRP54 subunit (InterPro:IPR006325)%3B BEST Arabidopsis thaliana protein match is: Signal recognition particle%2C SRP54 subunit protein (TAIR:AT1G48900.1)%3B Has 17558 Blast hits to 17547 proteins in 2928 species: Archae - 474%3B Bacteria - 10612%3B Metazoa - 362%3B Fungi - 294%3B Plants - 285%3B Viruses - 1%3B Other Eukaryotes - 5530 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9878634, PMID:7824644, PMID:8292790, PMID:12609051, PMID:18775970, locus:2037803; locus_type=protein_coding
AT1G15320.1	chr1:005272468	0.0	C/5272468-5272645,5272807-5273335,5273483-5273699	AT1G15320.1 CDS AT1G15320 ID=AT1G15320.1; Parent=AT1G15320; Name=AT1G15320.1; Note=seed dormancy control protein; conf_class=2; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: flower%3B EXPRESSED DURING: petal differentiation and expansion stage%3B Has 62 Blast hits to 62 proteins in 17 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 62%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2037813; locus_type=protein_coding
AT1G15320.2	chr1:005272468	0.0	C/5272468-5272645,5272807-5273335,5273483-5273619,5274004-5274029	AT1G15320.2 CDS AT1G15320 ID=AT1G15320.2; Parent=AT1G15320; Name=AT1G15320.2; Note=seed dormancy control protein; conf_class=2; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: flower%3B EXPRESSED DURING: petal differentiation and expansion stage%3B Has 62 Blast hits to 62 proteins in 17 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 62%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2037813; locus_type=protein_coding
AT1G15330.1	chr1:005274368	0.0	W/5274368-5275135,5275209-5275499	AT1G15330.1 CDS AT1G15330 ID=AT1G15330.1; Parent=AT1G15330; Name=AT1G15330.1; Note=Cystathionine beta-synthase (CBS) protein; conf_class=2; computational_description=Cystathionine beta-synthase (CBS) protein%3B CONTAINS InterPro DOMAIN/s: Cystathionine beta-synthase%2C core (InterPro:IPR000644)%3B BEST Arabidopsis thaliana protein match is: Cystathionine beta-synthase (CBS) family protein (TAIR:AT1G80090.1)%3B Has 526 Blast hits to 526 proteins in 132 species: Archae - 6%3B Bacteria - 4%3B Metazoa - 257%3B Fungi - 91%3B Plants - 124%3B Viruses - 0%3B Other Eukaryotes - 44 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17028154, PMID:19291320, PMID:21533063, PMID:23882272, locus:2037853; locus_type=protein_coding
AT1G15340.1	chr1:005275895	0.0	C/5275895-5276986,5277412-5277474	AT1G15340.1 CDS AT1G15340 ID=AT1G15340.1; Parent=AT1G15340; Name=AT1G15340.1; Note=methyl-CPG-binding domain 10; curator_summary=Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.; conf_class=2; symbol=MBD10; full_name=methyl-CPG-binding domain 10; computational_description=methyl-CPG-binding domain 10 (MBD10)%3B FUNCTIONS IN: methyl-CpG binding%2C DNA binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: nucleus%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: DNA-binding%2C integrase-type (InterPro:IPR016177)%2C Methyl-CpG DNA binding (InterPro:IPR001739)%3B BEST Arabidopsis thaliana protein match is: methyl-CPG-binding domain 11 (TAIR:AT3G15790.1)%3B Has 137026 Blast hits to 72034 proteins in 3183 species: Archae - 674%3B Bacteria - 27556%3B Metazoa - 48373%3B Fungi - 14456%3B Plants - 6804%3B Viruses - 747%3B Other Eukaryotes - 38416 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12169696, PMID:12787239, PMID:12954765, PMID:15888682, PMID:16679420, PMID:17208509, PMID:18218973, PMID:19061642, locus:2037863; locus_type=protein_coding
AT1G15340.2	chr1:005275895	0.0	C/5275895-5276725,5276882-5276986,5277412-5277474	AT1G15340.2 CDS AT1G15340 ID=AT1G15340.2; Parent=AT1G15340; Name=AT1G15340.2; Note=methyl-CPG-binding domain 10; curator_summary=Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.; conf_class=2; symbol=MBD10; full_name=methyl-CPG-binding domain 10; computational_description=methyl-CPG-binding domain 10 (MBD10)%3B FUNCTIONS IN: methyl-CpG binding%2C DNA binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: nucleus%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: DNA-binding%2C integrase-type (InterPro:IPR016177)%2C Methyl-CpG DNA binding (InterPro:IPR001739)%3B BEST Arabidopsis thaliana protein match is: methyl-CPG-binding domain 11 (TAIR:AT3G15790.1)%3B Has 137026 Blast hits to 72034 proteins in 3183 species: Archae - 674%3B Bacteria - 27556%3B Metazoa - 48373%3B Fungi - 14456%3B Plants - 6804%3B Viruses - 747%3B Other Eukaryotes - 38416 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12169696, PMID:12787239, PMID:12954765, PMID:15888682, PMID:16679420, PMID:17208509, PMID:18218973, PMID:19061642, locus:2037863; locus_type=protein_coding
AT1TE17050	chr1:005275965	0.0	W/5275965-5276773	AT1TE17050 transposable_element AT1TE17050 ID=AT1TE17050; Name=AT1TE17050; Alias=VANDAL17
AT1G15350.1	chr1:005278481	0.0	C/5278481-5278534,5278606-5278675,5278764-5278854,5278945-5279189,5279482-5279486	AT1G15350.1 CDS AT1G15350 ID=AT1G15350.1; Parent=AT1G15350; Name=AT1G15350.1; Note=DUF4050 family protein; conf_class=2; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15770.2)%3B Has 148 Blast hits to 148 proteins in 25 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 141%3B Viruses - 0%3B Other Eukaryotes - 7 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:15319479, PMID:18282305, PMID:18775970, PMID:20736450, locus:2037878; locus_type=protein_coding
AT1G15350.2	chr1:005278481	0.0	C/5278481-5278534,5278606-5278675,5278764-5278854,5278945-5279189,5279482-5279486	AT1G15350.2 CDS AT1G15350 ID=AT1G15350.2; Parent=AT1G15350; Name=AT1G15350.2; Note=DUF4050 family protein; conf_class=2; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15770.2)%3B Has 148 Blast hits to 148 proteins in 25 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 141%3B Viruses - 0%3B Other Eukaryotes - 7 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:15319479, PMID:18282305, PMID:18775970, PMID:20736450, locus:2037878; locus_type=protein_coding
AT1G15350.3	chr1:005278481	0.0	C/5278481-5278534,5278606-5278675,5278764-5278854,5278945-5279056	AT1G15350.3 CDS AT1G15350 ID=AT1G15350.3; Parent=AT1G15350; Name=AT1G15350.3; Note=DUF4050 family protein; conf_class=2; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15770.2)%3B Has 148 Blast hits to 148 proteins in 25 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 141%3B Viruses - 0%3B Other Eukaryotes - 7 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:15319479, PMID:18282305, PMID:18775970, PMID:20736450, locus:2037878; locus_type=protein_coding
AT1G15350.4	chr1:005278481	0.0	C/5278481-5278534,5278606-5278675,5278764-5278854,5278945-5279056	AT1G15350.4 CDS AT1G15350 ID=AT1G15350.4; Parent=AT1G15350; Name=AT1G15350.4; Note=DUF4050 family protein; Dbxref=PMID:14576160, PMID:15319479, PMID:18282305, PMID:18775970, PMID:20736450, locus:2037878; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15770.2)%3B Has 148 Blast hits to 148 proteins in 25 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 141%3B Viruses - 0%3B Other Eukaryotes - 7 (source: NCBI BLink).; locus_type=protein_coding
AT1G15350.5	chr1:005278481	0.0	C/5278481-5278534,5278606-5278675,5278764-5278854,5278945-5279056	AT1G15350.5 CDS AT1G15350 ID=AT1G15350.5; Parent=AT1G15350; Name=AT1G15350.5; Note=DUF4050 family protein; Dbxref=PMID:14576160, PMID:15319479, PMID:18282305, PMID:18775970, PMID:20736450, locus:2037878; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15770.2)%3B Has 148 Blast hits to 148 proteins in 25 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 141%3B Viruses - 0%3B Other Eukaryotes - 7 (source: NCBI BLink).; locus_type=protein_coding
AT1G15350.6	chr1:005278481	0.0	C/5278481-5278534,5278606-5278675,5278764-5278854,5278945-5279056	AT1G15350.6 CDS AT1G15350 ID=AT1G15350.6; Parent=AT1G15350; Name=AT1G15350.6; Note=DUF4050 family protein; Dbxref=PMID:14576160, PMID:15319479, PMID:18282305, PMID:18775970, PMID:20736450, locus:2037878; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15770.2)%3B Has 148 Blast hits to 148 proteins in 25 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 141%3B Viruses - 0%3B Other Eukaryotes - 7 (source: NCBI BLink).; locus_type=protein_coding
AT1G05157.1	chr1:005280264	0.0	W/5280264-5281274	AT1G05157.1 transcript_region AT1G05157 ID=AT1G05157.1; Parent=AT1G05157; computational_description=novel transcribed region%3B detected in carpel%2C root apical meristem%2C leaf%2C dark-grown seedling%2C flower%2C pollen%2C aerial; Name=AT1G05157.1; locus_type=novel_transcribed_region
AT1G15360.1	chr1:005283609	0.0	W/5283609-5283688,5283987-5284506	AT1G15360.1 CDS AT1G15360 ID=AT1G15360.1; Parent=AT1G15360; Name=AT1G15360.1; Note=Integrase-type DNA-binding superfamily protein; curator_summary=Encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11. This gene is involved in wax biosynthesis. Over-expression of the gene results in glossy leaf phenotype and increased drought tolerance. Two closely related genes%2C AT5G25390 and AT5G11190 have similar phenotypes when over-expressed. Strong expression levels in flowers. Binds to the promoter of LACS2.; conf_class=2; symbol=SHN1; Alias=AtSHN1, WIN1, WAX INDUCER 1; full_name=SHINE 1; computational_description=SHINE 1 (SHN1)%3B CONTAINS InterPro DOMAIN/s: DNA-binding%2C integrase-type (InterPro:IPR016177)%2C Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (InterPro:IPR001471)%3B BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G25390.2)%3B Has 5918 Blast hits to 5765 proteins in 265 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 9%3B Fungi - 23%3B Plants - 5843%3B Viruses - 2%3B Other Eukaryotes - 35 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9687012, PMID:11118137, PMID:15010618, PMID:15070782, PMID:15319479, PMID:16415209, PMID:16805732, PMID:16920880, PMID:19892830, PMID:21637781, PMID:22078383, PMID:22013217, PMID:22130861, PMID:22516817, PMID:23505340, PMID:23709630, PMID:23922943, PMID:25350113, PMID:25687296, locus:2037698; locus_type=protein_coding
AT1G15360.2	chr1:005283609	0.0	W/5283609-5283688,5283987-5284506	AT1G15360.2 CDS AT1G15360 ID=AT1G15360.2; Parent=AT1G15360; Name=AT1G15360.2; Note=Integrase-type DNA-binding superfamily protein; symbol=SHN1; Alias=AtSHN1, WIN1, WAX INDUCER 1; full_name=SHINE 1; Dbxref=PMID:9687012, PMID:11118137, PMID:15010618, PMID:15070782, PMID:15319479, PMID:16415209, PMID:16805732, PMID:16920880, PMID:19892830, PMID:21637781, PMID:22078383, PMID:22013217, PMID:22130861, PMID:22516817, PMID:23505340, PMID:23709630, PMID:23922943, PMID:25350113, PMID:25687296, locus:2037698; curator_summary=Encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11. This gene is involved in wax biosynthesis. Over-expression of the gene results in glossy leaf phenotype and increased drought tolerance. Two closely related genes%2C AT5G25390 and AT5G11190 have similar phenotypes when over-expressed. Strong expression levels in flowers. Binds to the promoter of LACS2.; computational_description=SHINE 1 (SHN1)%3B CONTAINS InterPro DOMAIN/s: DNA-binding%2C integrase-type (InterPro:IPR016177)%2C Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (InterPro:IPR001471)%3B BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G25390.2)%3B Has 5918 Blast hits to 5765 proteins in 265 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 9%3B Fungi - 23%3B Plants - 5843%3B Viruses - 2%3B Other Eukaryotes - 35 (source: NCBI BLink).; locus_type=protein_coding
AT1G15370.1	chr1:005287135	0.0	W/5287135-5287187,5287801-5287914,5288013-5288092,5288179-5288375	AT1G15370.1 CDS AT1G15370 ID=AT1G15370.1; Parent=AT1G15370; Name=AT1G15370.1; Note=SNARE-like superfamily protein; conf_class=2; computational_description=SNARE-like superfamily protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: transport%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Longin-like (InterPro:IPR011012)%3B Has 91 Blast hits to 91 proteins in 35 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 12%3B Plants - 67%3B Viruses - 0%3B Other Eukaryotes - 12 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16776300, PMID:18315867, PMID:18775970, locus:2037713; locus_type=protein_coding
AT1TE17090	chr1:005288933	0.0	C/5288933-5289334	AT1TE17090 transposable_element AT1TE17090 ID=AT1TE17090; Name=AT1TE17090; Alias=HELITRONY3
AT1TE17095	chr1:005289335	0.0	C/5289335-5290044	AT1TE17095 transposable_element AT1TE17095 ID=AT1TE17095; Name=AT1TE17095; Alias=ATREP11
AT1G15380.1	chr1:005290955	0.0	W/5290955-5291109,5291215-5291320,5292024-5292287	AT1G15380.1 CDS AT1G15380 ID=AT1G15380.1; Parent=AT1G15380; Name=AT1G15380.1; Note=Lactoylglutathione lyase / glyoxalase I family protein; conf_class=2; symbol=GLYI4; full_name=glyoxylase I 4; computational_description=Lactoylglutathione lyase / glyoxalase I family protein%3B CONTAINS InterPro DOMAIN/s: Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360)%3B BEST Arabidopsis thaliana protein match is: Lactoylglutathione lyase / glyoxalase I family protein (TAIR:AT1G80160.1)%3B Has 780 Blast hits to 780 proteins in 276 species: Archae - 1%3B Bacteria - 484%3B Metazoa - 4%3B Fungi - 2%3B Plants - 222%3B Viruses - 0%3B Other Eukaryotes - 67 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15047898, PMID:15634198, PMID:16258012, PMID:17337630, PMID:18650403, PMID:18775970, PMID:19291320, PMID:21213008, locus:2037728; locus_type=protein_coding
AT1G15380.2	chr1:005290955	0.0	W/5290955-5291109,5291215-5291320,5292024-5292287	AT1G15380.2 CDS AT1G15380 ID=AT1G15380.2; Parent=AT1G15380; Name=AT1G15380.2; Note=Lactoylglutathione lyase / glyoxalase I family protein; conf_class=2; symbol=GLYI4; full_name=glyoxylase I 4; computational_description=Lactoylglutathione lyase / glyoxalase I family protein%3B CONTAINS InterPro DOMAIN/s: Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360)%3B BEST Arabidopsis thaliana protein match is: Lactoylglutathione lyase / glyoxalase I family protein (TAIR:AT1G80160.1)%3B Has 780 Blast hits to 780 proteins in 276 species: Archae - 1%3B Bacteria - 484%3B Metazoa - 4%3B Fungi - 2%3B Plants - 222%3B Viruses - 0%3B Other Eukaryotes - 67 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15047898, PMID:15634198, PMID:16258012, PMID:17337630, PMID:18650403, PMID:18775970, PMID:19291320, PMID:21213008, locus:2037728; locus_type=protein_coding
AT1G15385.1	chr1:005292976	0.0	C/5292976-5293197	AT1G15385.1 CDS AT1G15385 ID=AT1G15385.1; Parent=AT1G15385; Name=AT1G15385.1; Note=cotton fiber protein; conf_class=1; computational_description=unknown protein%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF761%2C plant (InterPro:IPR008480)%3B Has 6 Blast hits to 6 proteins in 3 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 6%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:20032078, locus:1005716726; locus_type=protein_coding
AT1G15390.1	chr1:005294653	0.0	W/5294653-5295063,5295144-5295233,5295317-5295625	AT1G15390.1 CDS AT1G15390 ID=AT1G15390.1; Parent=AT1G15390; Name=AT1G15390.1; Note=peptide deformylase 1A; curator_summary=encodes a peptide deformylase-like protein. Removes N-formyl groups%2C a prerequisite for the action of methionine aminopeptidase during protein synthesis. Targeted to mitochondria. Requires Zn for catalysis.; conf_class=1; symbol=PDF1A; Alias=ATDEF1; full_name=peptide deformylase 1A; computational_description=peptide deformylase 1A (PDF1A)%3B FUNCTIONS IN: peptide deformylase activity%3B INVOLVED IN: translation%2C co-translational protein modification%3B LOCATED IN: mitochondrion%2C chloroplast%2C plant-type cell wall%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Formylmethionine deformylase (InterPro:IPR000181)%3B BEST Arabidopsis thaliana protein match is: peptide deformylase 1B (TAIR:AT5G14660.2)%3B Has 10999 Blast hits to 10999 proteins in 2667 species: Archae - 4%3B Bacteria - 8033%3B Metazoa - 124%3B Fungi - 0%3B Plants - 109%3B Viruses - 2%3B Other Eukaryotes - 2727 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11060042, PMID:11733990, PMID:11553738, PMID:12234499, PMID:12505980, PMID:14576160, PMID:16192279, PMID:16287169, PMID:18210371, PMID:18775970, PMID:17309682, PMID:21333657, PMID:24531459, locus:2037733; locus_type=protein_coding
AT1G15400.3	chr1:005296019	0.0	C/5296019-5296046,5296406-5296824	AT1G15400.3 CDS AT1G15400 ID=AT1G15400.3; Parent=AT1G15400; Name=AT1G15400.3; Note=hypothetical protein; conf_class=2; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80180.1)%3B Has 82 Blast hits to 82 proteins in 16 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 0%3B Fungi - 0%3B Plants - 75%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17360645, PMID:17586839, PMID:18650403, locus:2037738; locus_type=protein_coding
AT1G15400.1	chr1:005296033	0.0	C/5296033-5296051,5296406-5296824	AT1G15400.1 CDS AT1G15400 ID=AT1G15400.1; Parent=AT1G15400; Name=AT1G15400.1; Note=hypothetical protein; conf_class=2; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80180.1)%3B Has 82 Blast hits to 82 proteins in 16 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 0%3B Fungi - 0%3B Plants - 75%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17360645, PMID:17586839, PMID:18650403, locus:2037738; locus_type=protein_coding
AT1G15400.2	chr1:005296402	0.0	C/5296402-5296824	AT1G15400.2 CDS AT1G15400 ID=AT1G15400.2; Parent=AT1G15400; Name=AT1G15400.2; Note=hypothetical protein; conf_class=1; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80180.1)%3B Has 82 Blast hits to 82 proteins in 16 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 0%3B Fungi - 0%3B Plants - 75%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:17360645, PMID:17586839, PMID:18650403, locus:2037738; locus_type=protein_coding
AT1G05163.1	chr1:005297847	0.0	C/5297847-5298571	AT1G05163.1 antisense_lncRNA AT1G05163 ID=AT1G05163.1; Parent=AT1G05163; Name=AT1G05163.1; description=Natural antisense transcript overlaps with AT1G15410; Note=Natural antisense transcript overlaps with AT1G15410; locus_type=antisense_long_noncoding_rna
AT1G15405.1	chr1:005297875	0.0	C/5297875-5298166	AT1G15405.1 ncRNA AT1G15405 ID=AT1G15405.1; Parent=AT1G15405; Name=AT1G15405.1; index=1; curator_summary=Unknown gene; Dbxref=PMID:18613972, locus:4010713445; Note=other_RNA; locus_type=other_rna
AT1G15410.1	chr1:005299577	0.0	W/5299577-5300293,5300406-5300681	AT1G15410.1 CDS AT1G15410 ID=AT1G15410.1; Parent=AT1G15410; Name=AT1G15410.1; Note=aspartate-glutamate racemase family; conf_class=1; computational_description=aspartate-glutamate racemase family%3B FUNCTIONS IN: racemase and epimerase activity%2C acting on amino acids and derivatives%3B INVOLVED IN: metabolic process%2C cellular amino acid metabolic process%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Asp/Glu/hydantoin racemase (InterPro:IPR015942)%2C Aspartate racemase (InterPro:IPR004380)%2C Asp/Glu racemase (InterPro:IPR001920)%3B Has 2436 Blast hits to 2424 proteins in 674 species: Archae - 57%3B Bacteria - 1708%3B Metazoa - 0%3B Fungi - 2%3B Plants - 35%3B Viruses - 0%3B Other Eukaryotes - 634 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14576160, PMID:17360645, locus:2037743; locus_type=protein_coding
AT1G15410.2	chr1:005299577	0.0	W/5299577-5300293,5300406-5300681	AT1G15410.2 CDS AT1G15410 ID=AT1G15410.2; Parent=AT1G15410; Name=AT1G15410.2; Note=aspartate-glutamate racemase family; Dbxref=PMID:14576160, PMID:17360645, locus:2037743; computational_description=aspartate-glutamate racemase family%3B FUNCTIONS IN: racemase and epimerase activity%2C acting on amino acids and derivatives%3B INVOLVED IN: metabolic process%2C cellular amino acid metabolic process%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Asp/Glu/hydantoin racemase (InterPro:IPR015942)%2C Aspartate racemase (InterPro:IPR004380)%2C Asp/Glu racemase (InterPro:IPR001920)%3B Has 2436 Blast hits to 2424 proteins in 674 species: Archae - 57%3B Bacteria - 1708%3B Metazoa - 0%3B Fungi - 2%3B Plants - 35%3B Viruses - 0%3B Other Eukaryotes - 634 (source: NCBI BLink).; locus_type=protein_coding
AT1G15415.1	chr1:005300931	0.0	C/5300931-5301104,5301189-5301242,5301350-5301412	AT1G15415.1 CDS AT1G15415 ID=AT1G15415.1; Parent=AT1G15415; Name=AT1G15415.1; Note=late embryogenesis abundant-like protein; curator_summary=The protein encoded by this gene was identified as a part of pollen proteome by mass spec analysis. It has weak homology to LEA (late embryo abundant) proteins. Encodes protein phosphatase 2A (PP2A) B'gamma subunit. Targeted to nucleus and cytosol.; conf_class=2; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cytosol%2C nucleus%3B EXPRESSED IN: male gametophyte%3B Has 23 Blast hits to 23 proteins in 8 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 23%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16242667, PMID:19672620, PMID:20032078, PMID:21798377, locus:2823550; locus_type=protein_coding
AT1G15420.1	chr1:005301794	0.0	C/5301794-5301979,5302152-5302214,5302334-5302445,5302526-5302608,5302689-5302936,5303059-5303157,5303251-5303296	AT1G15420.1 CDS AT1G15420 ID=AT1G15420.1; Parent=AT1G15420; Name=AT1G15420.1; Note=WD repeat protein; conf_class=2; computational_description=CONTAINS InterPro DOMAIN/s: Small-subunit processome%2C Utp12 (InterPro:IPR007148)%3B Has 764 Blast hits to 656 proteins in 193 species: Archae - 0%3B Bacteria - 42%3B Metazoa - 237%3B Fungi - 154%3B Plants - 85%3B Viruses - 23%3B Other Eukaryotes - 223 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16776300, locus:2196603; locus_type=protein_coding
AT1G15420.2	chr1:005302253	0.0	C/5302253-5302445,5302526-5302608,5302689-5302936,5303059-5303157,5303251-5303296	AT1G15420.2 CDS AT1G15420 ID=AT1G15420.2; Parent=AT1G15420; Name=AT1G15420.2; Note=WD repeat protein; computational_description=CONTAINS InterPro DOMAIN/s: Small-subunit processome%2C Utp12 (InterPro:IPR007148)%3B Has 764 Blast hits to 656 proteins in 193 species: Archae - 0%3B Bacteria - 42%3B Metazoa - 237%3B Fungi - 154%3B Plants - 85%3B Viruses - 23%3B Other Eukaryotes - 223 (source: NCBI BLink).; Dbxref=PMID:16776300, locus:2196603; locus_type=protein_coding
AT1G15430.1	chr1:005305011	0.0	W/5305011-5305790	AT1G15430.1 CDS AT1G15430 ID=AT1G15430.1; Parent=AT1G15430; Name=AT1G15430.1; Note=hypothetical protein (DUF1644); conf_class=2; computational_description=Protein of unknown function (DUF1644)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1644 (InterPro:IPR012866)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1644) (TAIR:AT1G80220.1)%3B Has 273 Blast hits to 249 proteins in 14 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 273%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18650403, PMID:18775970, locus:2037778; locus_type=protein_coding
AT1G15430.2	chr1:005305011	0.0	W/5305011-5305790	AT1G15430.2 CDS AT1G15430 ID=AT1G15430.2; Parent=AT1G15430; Name=AT1G15430.2; Note=hypothetical protein (DUF1644); conf_class=1; computational_description=Protein of unknown function (DUF1644)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1644 (InterPro:IPR012866)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1644) (TAIR:AT1G80220.1)%3B Has 273 Blast hits to 249 proteins in 14 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 273%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:18650403, PMID:18775970, locus:2037778; locus_type=protein_coding
AT1G15440.1	chr1:005306159	0.0	C/5306159-5306329,5306419-5306646,5306730-5307074,5307174-5307545,5307686-5307778,5307867-5308118,5308219-5309460	AT1G15440.1 CDS AT1G15440 ID=AT1G15440.1; Parent=AT1G15440; Name=AT1G15440.1; Note=periodic tryptophan protein 2; curator_summary=Encodes a nucleolar protein that is a ribosome biogenesis co-factor. Mutants display aberrant RNA processing and female gametophyte development.; conf_class=2; symbol=PWP2; Alias=ATPWP2, PERIODIC TRYPTOPHAN PROTEIN 2; full_name=periodic tryptophan protein 2; computational_description=periodic tryptophan protein 2 (PWP2)%3B FUNCTIONS IN: nucleotide binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: CUL4 RING ubiquitin ligase complex%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782)%2C WD40 repeat%2C conserved site (InterPro:IPR019775)%2C WD40 repeat (InterPro:IPR001680)%2C Small-subunit processome%2C Utp12 (InterPro:IPR007148)%2C G-protein beta WD-40 repeat%2C region (InterPro:IPR020472)%2C WD40 repeat-like-containing domain (InterPro:IPR011046)%2C WD40-repeat-containing domain (InterPro:IPR017986)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C WD40 repeat%2C subgroup (InterPro:IPR019781)%3B BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G11160.1)%3B Has 76374 Blast hits to 32281 proteins in 860 species: Archae - 60%3B Bacteria - 9617%3B Metazoa - 31125%3B Fungi - 15572%3B Plants - 10039%3B Viruses - 0%3B Other Eukaryotes - 9961 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15047898, PMID:18223036, PMID:18552200, PMID:19929880, PMID:23185391, PMID:23382868, locus:2037798; locus_type=protein_coding
AT1G15440.2	chr1:005306159	0.0	C/5306159-5306329,5306419-5306646,5306730-5307074,5307174-5307545,5307686-5307778,5307867-5308118,5308219-5308843,5308964-5309460	AT1G15440.2 CDS AT1G15440 ID=AT1G15440.2; Parent=AT1G15440; Name=AT1G15440.2; Note=periodic tryptophan protein 2; curator_summary=Encodes a nucleolar protein that is a ribosome biogenesis co-factor. Mutants display aberrant RNA processing and female gametophyte development.; conf_class=2; symbol=PWP2; Alias=ATPWP2, PERIODIC TRYPTOPHAN PROTEIN 2; full_name=periodic tryptophan protein 2; computational_description=periodic tryptophan protein 2 (PWP2)%3B FUNCTIONS IN: nucleotide binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: CUL4 RING ubiquitin ligase complex%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782)%2C WD40 repeat%2C conserved site (InterPro:IPR019775)%2C WD40 repeat (InterPro:IPR001680)%2C Small-subunit processome%2C Utp12 (InterPro:IPR007148)%2C G-protein beta WD-40 repeat%2C region (InterPro:IPR020472)%2C WD40 repeat-like-containing domain (InterPro:IPR011046)%2C WD40-repeat-containing domain (InterPro:IPR017986)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C WD40 repeat%2C subgroup (InterPro:IPR019781)%3B BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G11160.1)%3B Has 76374 Blast hits to 32281 proteins in 860 species: Archae - 60%3B Bacteria - 9617%3B Metazoa - 31125%3B Fungi - 15572%3B Plants - 10039%3B Viruses - 0%3B Other Eukaryotes - 9961 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15047898, PMID:18223036, PMID:18552200, PMID:19929880, PMID:23185391, PMID:23382868, locus:2037798; locus_type=protein_coding
AT1G15450.1	chr1:005309647	0.0	C/5309647-5309718	AT1G15450.1 tRNA AT1G15450 ID=AT1G15450.1; Parent=AT1G15450; Note=tRNA-Trp; computational_description=tRNA-Trp (anticodon: CCA); Dbxref=PMID:8980477, PMID:23066098, PMID:8980477, locus:3691611; Name=AT1G15450.1; locus_type=pre_trna
AT1G15460.1	chr1:005310196	0.0	C/5310196-5310255,5310341-5310460,5310610-5310889,5310983-5311320,5311412-5311528,5311605-5311700,5311775-5311948,5312035-5312201,5312282-5312586,5312679-5312871,5313089-5313171,5313258-5313376	AT1G15460.1 CDS AT1G15460 ID=AT1G15460.1; Parent=AT1G15460; Name=AT1G15460.1; Note=HCO3- transporter family; curator_summary=Encodes a efflux-type boron transporter. Over-expression improved plant growth under B toxic conditions.; conf_class=1; symbol=BOR4; Alias=ATBOR4, ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4; full_name=REQUIRES HIGH BORON 4; computational_description=REQUIRES HIGH BORON 4 (BOR4)%3B CONTAINS InterPro DOMAIN/s: Bicarbonate transporter%2C eukaryotic (InterPro:IPR003020)%2C Bicarbonate transporter%2C C-terminal (InterPro:IPR011531)%3B BEST Arabidopsis thaliana protein match is: HCO3- transporter family (TAIR:AT1G74810.1)%3B Has 2623 Blast hits to 1400 proteins in 194 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 1965%3B Fungi - 314%3B Plants - 231%3B Viruses - 2%3B Other Eukaryotes - 107 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12447444, PMID:18048682, PMID:18603465, PMID:20451385, PMID:21148314, PMID:22146734, locus:2037808; locus_type=protein_coding
AT1G15460.2	chr1:005310196	0.0	C/5310196-5310255,5310341-5310460,5310610-5310889,5310983-5311320,5311412-5311528,5311605-5311700,5311775-5311948,5312035-5312201,5312282-5312586,5312679-5312871,5313089-5313171,5313258-5313376	AT1G15460.2 CDS AT1G15460 ID=AT1G15460.2; Parent=AT1G15460; Name=AT1G15460.2; Note=HCO3- transporter family; symbol=BOR4; Alias=ATBOR4, ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4; full_name=REQUIRES HIGH BORON 4; Dbxref=PMID:12447444, PMID:18048682, PMID:18603465, PMID:20451385, PMID:21148314, PMID:22146734, locus:2037808; curator_summary=Encodes a efflux-type boron transporter. Over-expression improved plant growth under B toxic conditions.; computational_description=REQUIRES HIGH BORON 4 (BOR4)%3B CONTAINS InterPro DOMAIN/s: Bicarbonate transporter%2C eukaryotic (InterPro:IPR003020)%2C Bicarbonate transporter%2C C-terminal (InterPro:IPR011531)%3B BEST Arabidopsis thaliana protein match is: HCO3- transporter family (TAIR:AT1G74810.1)%3B Has 2623 Blast hits to 1400 proteins in 194 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 1965%3B Fungi - 314%3B Plants - 231%3B Viruses - 2%3B Other Eukaryotes - 107 (source: NCBI BLink).; locus_type=protein_coding
AT1G15460.4	chr1:005310196	0.0	C/5310196-5310255,5310341-5310460,5310610-5310889,5310983-5311320,5311412-5311528,5311605-5311700,5311775-5311948,5312035-5312201,5312282-5312586,5312679-5312755	AT1G15460.4 CDS AT1G15460 ID=AT1G15460.4; Parent=AT1G15460; Name=AT1G15460.4; Note=HCO3- transporter family; symbol=BOR4; Alias=ATBOR4, ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4; full_name=REQUIRES HIGH BORON 4; curator_summary=Encodes a efflux-type boron transporter. Over-expression improved plant growth under B toxic conditions.; computational_description=REQUIRES HIGH BORON 4 (BOR4)%3B CONTAINS InterPro DOMAIN/s: Bicarbonate transporter%2C eukaryotic (InterPro:IPR003020)%2C Bicarbonate transporter%2C C-terminal (InterPro:IPR011531)%3B BEST Arabidopsis thaliana protein match is: HCO3- transporter family (TAIR:AT1G74810.1)%3B Has 2623 Blast hits to 1400 proteins in 194 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 1965%3B Fungi - 314%3B Plants - 231%3B Viruses - 2%3B Other Eukaryotes - 107 (source: NCBI BLink).; Dbxref=PMID:12447444, PMID:18048682, PMID:18603465, PMID:20451385, PMID:21148314, PMID:22146734, locus:2037808; locus_type=protein_coding
AT1G15460.3	chr1:005310514	0.0	C/5310514-5310889,5310983-5311320,5311412-5311528,5311605-5311700,5311775-5311948,5312035-5312201,5312282-5312586,5312679-5312871,5313089-5313171,5313258-5313376	AT1G15460.3 CDS AT1G15460 ID=AT1G15460.3; Parent=AT1G15460; Name=AT1G15460.3; Note=HCO3- transporter family; symbol=BOR4; Alias=ATBOR4, ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4; full_name=REQUIRES HIGH BORON 4; curator_summary=Encodes a efflux-type boron transporter. Over-expression improved plant growth under B toxic conditions.; computational_description=REQUIRES HIGH BORON 4 (BOR4)%3B CONTAINS InterPro DOMAIN/s: Bicarbonate transporter%2C eukaryotic (InterPro:IPR003020)%2C Bicarbonate transporter%2C C-terminal (InterPro:IPR011531)%3B BEST Arabidopsis thaliana protein match is: HCO3- transporter family (TAIR:AT1G74810.1)%3B Has 2623 Blast hits to 1400 proteins in 194 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 1965%3B Fungi - 314%3B Plants - 231%3B Viruses - 2%3B Other Eukaryotes - 107 (source: NCBI BLink).; Dbxref=PMID:12447444, PMID:18048682, PMID:18603465, PMID:20451385, PMID:21148314, PMID:22146734, locus:2037808; locus_type=protein_coding
AT1G15470.1	chr1:005315838	0.0	W/5315838-5315940,5316173-5316308,5316509-5316590,5316766-5316941,5317027-5317164,5317250-5317389,5317470-5317696	AT1G15470.1 CDS AT1G15470 ID=AT1G15470.1; Parent=AT1G15470; Name=AT1G15470.1; Note=Transducin/WD40 repeat-like superfamily protein; conf_class=2; computational_description=Transducin/WD40 repeat-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782)%2C WD40 repeat-like-containing domain (InterPro:IPR011046)%2C WD40 repeat%2C conserved site (InterPro:IPR019775)%2C WD40-repeat-containing domain (InterPro:IPR017986)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C WD40 repeat (InterPro:IPR001680)%2C WD40 repeat%2C subgroup (InterPro:IPR019781)%3B BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G15610.1)%3B Has 41653 Blast hits to 22434 proteins in 735 species: Archae - 64%3B Bacteria - 7048%3B Metazoa - 15440%3B Fungi - 9730%3B Plants - 4355%3B Viruses - 0%3B Other Eukaryotes - 5016 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12753585, PMID:18552200, PMID:18775970, PMID:21477822, locus:2037818; locus_type=protein_coding
AT1G15470.2	chr1:005315838	0.0	W/5315838-5315940,5316173-5316308,5316509-5316590,5316766-5316941,5317027-5317164,5317250-5317463	AT1G15470.2 CDS AT1G15470 ID=AT1G15470.2; Parent=AT1G15470; Name=AT1G15470.2; Note=Transducin/WD40 repeat-like superfamily protein; computational_description=Transducin/WD40 repeat-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782)%2C WD40 repeat-like-containing domain (InterPro:IPR011046)%2C WD40 repeat%2C conserved site (InterPro:IPR019775)%2C WD40-repeat-containing domain (InterPro:IPR017986)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C WD40 repeat (InterPro:IPR001680)%2C WD40 repeat%2C subgroup (InterPro:IPR019781)%3B BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G15610.1)%3B Has 41653 Blast hits to 22434 proteins in 735 species: Archae - 64%3B Bacteria - 7048%3B Metazoa - 15440%3B Fungi - 9730%3B Plants - 4355%3B Viruses - 0%3B Other Eukaryotes - 5016 (source: NCBI BLink).; Dbxref=PMID:12753585, PMID:18552200, PMID:18775970, PMID:21477822, locus:2037818; locus_type=protein_coding
AT1G15480.1	chr1:005318307	0.0	W/5318307-5318335,5318500-5319007,5319175-5320422	AT1G15480.1 CDS AT1G15480 ID=AT1G15480.1; Parent=AT1G15480; Name=AT1G15480.1; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; conf_class=2; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: PENTATRICOPEPTIDE REPEAT 596 (TAIR:AT1G80270.3)%3B Has 10417 Blast hits to 5237 proteins in 200 species: Archae - 3%3B Bacteria - 20%3B Metazoa - 156%3B Fungi - 81%3B Plants - 9958%3B Viruses - 0%3B Other Eukaryotes - 199 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16244144, locus:2037823; locus_type=protein_coding
AT1G15490.1	chr1:005320859	0.0	C/5320859-5320981,5321076-5321276,5321348-5321551,5321634-5321762,5321846-5322562,5322653-5322960,5323158-5323422	AT1G15490.1 CDS AT1G15490 ID=AT1G15490.1; Parent=AT1G15490; Name=AT1G15490.1; Note=alpha/beta-Hydrolases superfamily protein; conf_class=2; computational_description=alpha/beta-Hydrolases superfamily protein%3B CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073)%3B BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G80280.1)%3B Has 5830 Blast hits to 5818 proteins in 1057 species: Archae - 56%3B Bacteria - 4179%3B Metazoa - 223%3B Fungi - 71%3B Plants - 420%3B Viruses - 1%3B Other Eukaryotes - 880 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:18775970, PMID:20736450, locus:2037828; locus_type=protein_coding
AT1G15490.2	chr1:005320859	0.0	C/5320859-5320981,5321076-5321276,5321348-5321551,5321634-5321762,5321846-5322562,5322653-5323012	AT1G15490.2 CDS AT1G15490 ID=AT1G15490.2; Parent=AT1G15490; Name=AT1G15490.2; Note=alpha/beta-Hydrolases superfamily protein; computational_description=alpha/beta-Hydrolases superfamily protein%3B CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073)%3B BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G80280.1)%3B Has 5830 Blast hits to 5818 proteins in 1057 species: Archae - 56%3B Bacteria - 4179%3B Metazoa - 223%3B Fungi - 71%3B Plants - 420%3B Viruses - 1%3B Other Eukaryotes - 880 (source: NCBI BLink).; Dbxref=PMID:14576160, PMID:18775970, PMID:20736450, locus:2037828; locus_type=protein_coding
AT1G15490.4	chr1:005320859	0.0	C/5320859-5320981,5321076-5321276,5321348-5321551,5321634-5321762,5321846-5322562,5322653-5322769	AT1G15490.4 CDS AT1G15490 ID=AT1G15490.4; Parent=AT1G15490; Name=AT1G15490.4; Note=alpha/beta-Hydrolases superfamily protein; computational_description=alpha/beta-Hydrolases superfamily protein%3B CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073)%3B BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G80280.1)%3B Has 5830 Blast hits to 5818 proteins in 1057 species: Archae - 56%3B Bacteria - 4179%3B Metazoa - 223%3B Fungi - 71%3B Plants - 420%3B Viruses - 1%3B Other Eukaryotes - 880 (source: NCBI BLink).; Dbxref=PMID:14576160, PMID:18775970, PMID:20736450, locus:2037828; locus_type=protein_coding
AT1G15490.3	chr1:005321312	0.0	C/5321312-5321551,5321634-5321762,5321846-5322562,5322653-5322960,5323158-5323422	AT1G15490.3 CDS AT1G15490 ID=AT1G15490.3; Parent=AT1G15490; Name=AT1G15490.3; Note=alpha/beta-Hydrolases superfamily protein; computational_description=alpha/beta-Hydrolases superfamily protein%3B CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073)%3B BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G80280.1)%3B Has 5830 Blast hits to 5818 proteins in 1057 species: Archae - 56%3B Bacteria - 4179%3B Metazoa - 223%3B Fungi - 71%3B Plants - 420%3B Viruses - 1%3B Other Eukaryotes - 880 (source: NCBI BLink).; Dbxref=PMID:14576160, PMID:18775970, PMID:20736450, locus:2037828; locus_type=protein_coding
AT1G15500.1	chr1:005326426	0.0	W/5326426-5327205,5327350-5327604,5327691-5327834,5327926-5328273,5328359-5328688	AT1G15500.1 CDS AT1G15500 ID=AT1G15500.1; Parent=AT1G15500; Name=AT1G15500.1; Note=TLC ATP/ADP transporter; conf_class=2; symbol=ATNTT2; computational_description=ATNTT2%3B FUNCTIONS IN: ATP:ADP antiporter activity%3B INVOLVED IN: transport%3B LOCATED IN: chloroplast%2C chloroplast envelope%2C cytoplasm%3B EXPRESSED IN: 7 plant structures%3B EXPRESSED DURING: M germinated pollen stage%2C seedling growth%3B CONTAINS InterPro DOMAIN/s: ADP/ATP carrier protein (InterPro:IPR004667)%3B BEST Arabidopsis thaliana protein match is: nucleotide transporter 1 (TAIR:AT1G80300.1)%3B Has 767 Blast hits to 762 proteins in 173 species: Archae - 0%3B Bacteria - 466%3B Metazoa - 8%3B Fungi - 28%3B Plants - 101%3B Viruses - 0%3B Other Eukaryotes - 164 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:15610358, PMID:15703057, PMID:16618929, PMID:17355434, PMID:17919328, locus:2196588; locus_type=protein_coding
AT1G15510.1	chr1:005329111	0.0	W/5329111-5331711	AT1G15510.1 CDS AT1G15510 ID=AT1G15510.1; Parent=AT1G15510; Name=AT1G15510.1; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; curator_summary=Encodes a pentatricopeptide repeat protein required for chloroplast transcript accD RNA editing and early chloroplast biogenesis.; conf_class=1; symbol=ECB2; Alias=ATECB2, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, VAC1, VANILLA CREAM 1; full_name=EARLY CHLOROPLAST BIOGENESIS2; computational_description=EARLY CHLOROPLAST BIOGENESIS2 (ECB2)%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G18750.1)%3B Has 49765 Blast hits to 13993 proteins in 266 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 64%3B Fungi - 140%3B Plants - 48782%3B Viruses - 0%3B Other Eukaryotes - 773 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11826309, PMID:14576160, PMID:19500301, PMID:19889879, PMID:20143129, PMID:21294841, locus:2196583; locus_type=protein_coding
AT1G15520.1	chr1:005331993	0.0	C/5331993-5332253,5332346-5332600,5332684-5332855,5332949-5333176,5333262-5333395,5333478-5333561,5333645-5333935,5334018-5334350,5334431-5334612,5334707-5334863,5334964-5335067,5335151-5335311,5335407-5335723,5335831-5336112,5336194-5336586,5336673-5336726,5336811-5336887,5336985-5337144,5337244-5337328,5337421-5337509,5337598-5337718,5337844-5338175	AT1G15520.1 CDS AT1G15520 ID=AT1G15520.1; Parent=AT1G15520; Name=AT1G15520.1; Note=pleiotropic drug resistance 12; curator_summary=ABC transporter family involved in ABA transport and resistance to lead. Localizes to plasma membrane. Upregulated by lead. Expressed in leaves%2C flowers%2C stomata and roots.; conf_class=2; symbol=ABCG40; Alias=ATABCG40, Arabidopsis thaliana ATP-binding cassette G40, ATPDR12, PLEIOTROPIC DRUG RESISTANCE 12, PDR12, pleiotropic drug resistance 12; full_name=ATP-binding cassette G40; computational_description=pleiotropic drug resistance 12 (PDR12)%3B CONTAINS InterPro DOMAIN/s: ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C ABC transporter-like (InterPro:IPR003439)%2C Plant PDR ABC transporter associated (InterPro:IPR013581)%2C ABC-2 type transporter (InterPro:IPR013525)%3B BEST Arabidopsis thaliana protein match is: pleiotropic drug resistance 11 (TAIR:AT1G66950.1)%3B Has 377983 Blast hits to 279992 proteins in 3946 species: Archae - 7615%3B Bacteria - 304057%3B Metazoa - 8776%3B Fungi - 6428%3B Plants - 5794%3B Viruses - 2%3B Other Eukaryotes - 45311 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11346655, PMID:11855639, PMID:12430018, PMID:12376647, PMID:14576160, PMID:15381434, PMID:15860015, PMID:15824099, PMID:15923333, PMID:16258017, PMID:16415066, PMID:16506311, PMID:16581873, PMID:17565617, PMID:17665211, PMID:18065561, PMID:18299247, PMID:18252252, PMID:18334669, PMID:19054359, PMID:19153049, PMID:20133880, PMID:20736450, PMID:20935463, PMID:21165647, PMID:22525244, PMID:22685082, PMID:23877877, PMID:24737862, locus:2196593; locus_type=protein_coding
AT1G15520.2	chr1:005332561	0.0	C/5332561-5332855,5332949-5333176,5333262-5333395,5333478-5333561,5333645-5333935,5334018-5334350,5334431-5334612,5334707-5334863,5334964-5335067,5335151-5335311,5335407-5335723,5335831-5336112,5336194-5336586,5336673-5336726,5336811-5336887,5336985-5337144,5337244-5337328,5337421-5337509,5337598-5337718,5337844-5338175	AT1G15520.2 CDS AT1G15520 ID=AT1G15520.2; Parent=AT1G15520; Name=AT1G15520.2; Note=pleiotropic drug resistance 12; symbol=ABCG40; Alias=ATABCG40, Arabidopsis thaliana ATP-binding cassette G40, ATPDR12, PLEIOTROPIC DRUG RESISTANCE 12, PDR12, pleiotropic drug resistance 12; full_name=ATP-binding cassette G40; curator_summary=ABC transporter family involved in ABA transport and resistance to lead. Localizes to plasma membrane. Upregulated by lead. Expressed in leaves%2C flowers%2C stomata and roots.; computational_description=pleiotropic drug resistance 12 (PDR12)%3B CONTAINS InterPro DOMAIN/s: ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C ABC transporter-like (InterPro:IPR003439)%2C Plant PDR ABC transporter associated (InterPro:IPR013581)%2C ABC-2 type transporter (InterPro:IPR013525)%3B BEST Arabidopsis thaliana protein match is: pleiotropic drug resistance 11 (TAIR:AT1G66950.1)%3B Has 377983 Blast hits to 279992 proteins in 3946 species: Archae - 7615%3B Bacteria - 304057%3B Metazoa - 8776%3B Fungi - 6428%3B Plants - 5794%3B Viruses - 2%3B Other Eukaryotes - 45311 (source: NCBI BLink).; Dbxref=PMID:11346655, PMID:11855639, PMID:12430018, PMID:12376647, PMID:14576160, PMID:15381434, PMID:15860015, PMID:15824099, PMID:15923333, PMID:16258017, PMID:16415066, PMID:16506311, PMID:16581873, PMID:17565617, PMID:17665211, PMID:18065561, PMID:18299247, PMID:18252252, PMID:18334669, PMID:19054359, PMID:19153049, PMID:20133880, PMID:20736450, PMID:20935463, PMID:21165647, PMID:22525244, PMID:22685082, PMID:23877877, PMID:24737862, locus:2196593; locus_type=protein_coding
AT1G08915.1	chr1:005339715	0.0	C/5339715-5339922	AT1G08915.1 transcript_region AT1G08915 ID=AT1G08915.1; Parent=AT1G08915; computational_description=novel transcribed region; Name=AT1G08915.1; locus_type=novel_transcribed_region
AT1G15530.1	chr1:005339961	0.0	C/5339961-5341931	AT1G15530.1 CDS AT1G15530 ID=AT1G15530.1; Parent=AT1G15530; Name=AT1G15530.1; Note=Concanavalin A-like lectin protein kinase family protein; conf_class=1; Alias=LecRK-S.1, L-type lectin receptor kinase S.1; computational_description=Concanavalin A-like lectin protein kinase family protein%3B FUNCTIONS IN: carbohydrate binding%2C kinase activity%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: plasma membrane%2C vacuole%3B EXPRESSED IN: synergid%2C cultured cell%3B CONTAINS InterPro DOMAIN/s: Legume lectin%2C beta chain (InterPro:IPR001220)%2C Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Concanavalin A-like lectin/glucanase%2C subgroup (InterPro:IPR013320)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Concanavalin A-like lectin/glucanase (InterPro:IPR008985)%2C Legume lectin%2C beta chain%2C Mn/Ca-binding site (InterPro:IPR019825)%3B BEST Arabidopsis thaliana protein match is: Concanavalin A-like lectin protein kinase family protein (TAIR:AT4G29050.1)%3B Has 122402 Blast hits to 120886 proteins in 4615 species: Archae - 112%3B Bacteria - 13960%3B Metazoa - 45016%3B Fungi - 10521%3B Plants - 34601%3B Viruses - 479%3B Other Eukaryotes - 17713 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:19773388, PMID:20226671, PMID:20736450, locus:2196608; locus_type=protein_coding
AT1G15540.2	chr1:005342425	0.0	W/5342425-5342428,5342582-5342972,5343058-5343382,5343454-5343705	AT1G15540.2 CDS AT1G15540 ID=AT1G15540.2; Parent=AT1G15540; Name=AT1G15540.2; Note=2-oxoglutarate-dependent dioxygenase-like protein; computational_description=2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein%3B FUNCTIONS IN: oxidoreductase activity%3B INVOLVED IN: N-terminal protein myristoylation%3B CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123)%3B BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G80320.1)%3B Has 4520 Blast hits to 4453 proteins in 605 species: Archae - 0%3B Bacteria - 428%3B Metazoa - 27%3B Fungi - 309%3B Plants - 3395%3B Viruses - 0%3B Other Eukaryotes - 361 (source: NCBI BLink).; Dbxref=PMID:12912986, locus:2196618; locus_type=protein_coding
AT1G15540.3	chr1:005342566	0.0	W/5342566-5342972,5343058-5343382,5343454-5343705	AT1G15540.3 CDS AT1G15540 ID=AT1G15540.3; Parent=AT1G15540; Name=AT1G15540.3; Note=2-oxoglutarate-dependent dioxygenase-like protein; computational_description=2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein%3B FUNCTIONS IN: oxidoreductase activity%3B INVOLVED IN: N-terminal protein myristoylation%3B CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123)%3B BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G80320.1)%3B Has 4520 Blast hits to 4453 proteins in 605 species: Archae - 0%3B Bacteria - 428%3B Metazoa - 27%3B Fungi - 309%3B Plants - 3395%3B Viruses - 0%3B Other Eukaryotes - 361 (source: NCBI BLink).; Dbxref=PMID:12912986, locus:2196618; locus_type=protein_coding
AT1G15540.1	chr1:005342587	0.0	W/5342587-5342972,5343058-5343382,5343454-5343705	AT1G15540.1 CDS AT1G15540 ID=AT1G15540.1; Parent=AT1G15540; Name=AT1G15540.1; Note=2-oxoglutarate-dependent dioxygenase-like protein; conf_class=5; computational_description=2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein%3B FUNCTIONS IN: oxidoreductase activity%3B INVOLVED IN: N-terminal protein myristoylation%3B CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123)%3B BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G80320.1)%3B Has 4520 Blast hits to 4453 proteins in 605 species: Archae - 0%3B Bacteria - 428%3B Metazoa - 27%3B Fungi - 309%3B Plants - 3395%3B Viruses - 0%3B Other Eukaryotes - 361 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:12912986, locus:2196618; locus_type=protein_coding
AT1G15540.4	chr1:005342587	0.0	W/5342587-5342972,5343058-5343382,5343454-5343705	AT1G15540.4 CDS AT1G15540 ID=AT1G15540.4; Parent=AT1G15540; Name=AT1G15540.4; Note=2-oxoglutarate-dependent dioxygenase-like protein; Dbxref=PMID:12912986, locus:2196618; computational_description=2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein%3B FUNCTIONS IN: oxidoreductase activity%3B INVOLVED IN: N-terminal protein myristoylation%3B CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123)%3B BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G80320.1)%3B Has 4520 Blast hits to 4453 proteins in 605 species: Archae - 0%3B Bacteria - 428%3B Metazoa - 27%3B Fungi - 309%3B Plants - 3395%3B Viruses - 0%3B Other Eukaryotes - 361 (source: NCBI BLink).; locus_type=protein_coding
AT1G15550.1	chr1:005344569	0.0	C/5344569-5345154,5345588-5346078	AT1G15550.1 CDS AT1G15550 ID=AT1G15550.1; Parent=AT1G15550; Name=AT1G15550.1; Note=gibberellin 3-oxidase 1; curator_summary=Involved in later steps of the gibberellic acid biosynthetic pathway. Activated by AGAMOUS in a cal-1%2C ap1-1 background. Deletion of 208 bp from -1016 to -809 (%26#916%3B-808) resulted in loss of GA-negative feedback (this sequence%2C which contains a 43-bp sequence GNFEI%2C was shown to be sufficient for GA-negative feedback).; conf_class=2; symbol=GA3OX1; Alias=ATGA3OX1, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, GA4, GA REQUIRING 4; full_name=gibberellin 3-oxidase 1; computational_description=gibberellin 3-oxidase 1 (GA3OX1)%3B CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283)%2C Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123)%3B BEST Arabidopsis thaliana protein match is: gibberellin 3-oxidase 2 (TAIR:AT1G80340.1)%3B Has 8504 Blast hits to 8472 proteins in 995 species: Archae - 0%3B Bacteria - 1119%3B Metazoa - 109%3B Fungi - 1012%3B Plants - 4925%3B Viruses - 0%3B Other Eukaryotes - 1339 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10517835, PMID:10330476, PMID:9836749, PMID:9701576, PMID:9625708, PMID:9490740, PMID:9286112, PMID:9276956, PMID:8756507, PMID:8919908, PMID:7756830, PMID:2236013, PMID:11717468, PMID:11449051, PMID:12232414, PMID:12232124, PMID:11737781, PMID:14729916, PMID:15181202, PMID:15634696, PMID:15923331, PMID:15967779, PMID:15927942, PMID:16045477, PMID:16460513, PMID:16543410, PMID:16815952, PMID:16740147, PMID:17010113, PMID:17289793, PMID:17277098, PMID:17449805, PMID:17521606, PMID:17933900, PMID:18310462, PMID:18487351, PMID:18650403, PMID:19074625, PMID:17644628, PMID:19874540, PMID:20008096, PMID:20430474, PMID:20872270, PMID:21056641, PMID:21217124, PMID:22128331, PMID:22282534, PMID:22549837, PMID:23536800, PMID:23590427, PMID:22483719, PMID:23893173, PMID:24192296, PMID:24374505, PMID:24281950, PMID:24528333, PMID:23922762, PMID:25616734, locus:2196623; locus_type=protein_coding
AT1G15560.1	chr1:005352655	0.0	C/5352655-5354314	AT1G15560.1 CDS AT1G15560 ID=AT1G15560.1; Parent=AT1G15560; Name=AT1G15560.1; index=1; computational_description=CACTA-like transposase family (Ptta/En/Spm)%2C has a 3.8e-130 P-value blast match to At1g15560.1/58-302 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana); Dbxref=locus:2196628; Note=transposable_element_gene; locus_type=transposable_element_gene
AT1TE17300	chr1:005353335	0.0	C/5353335-5353756	AT1TE17300 transposable_element AT1TE17300 ID=AT1TE17300; Name=AT1TE17300; Alias=ATENSPM8
AT1TE17305	chr1:005353757	0.0	C/5353757-5353862	AT1TE17305 transposable_element AT1TE17305 ID=AT1TE17305; Name=AT1TE17305; Alias=ATENSPM8
AT1G05167.1	chr1:005355737	0.0	C/5355737-5356794	AT1G05167.1 transcript_region AT1G05167 ID=AT1G05167.1; Parent=AT1G05167; computational_description=novel transcribed region%3B detected in root%2C carpel%2C receptacle%2C dark-grown seedling%2C light-grown seedling%2C flower%2C pollen; Name=AT1G05167.1; locus_type=novel_transcribed_region
AT1G05167.2	chr1:005355848	0.0	C/5355848-5356794	AT1G05167.2 transcript_region AT1G05167 ID=AT1G05167.2; Parent=AT1G05167; computational_description=novel transcribed region%3B detected in root%2C carpel%2C receptacle%2C dark-grown seedling%2C light-grown seedling%2C flower%2C pollen; Name=AT1G05167.2; locus_type=novel_transcribed_region
AT1G05173.1	chr1:005356374	0.0	W/5356374-5356587	AT1G05173.1 lnc_RNA AT1G05173 ID=AT1G05173.1; Parent=AT1G05173; Name=AT1G05173.1; locus_type=long_noncoding_rna
AT1TE17315	chr1:005357354	0.0	W/5357354-5357511	AT1TE17315 transposable_element AT1TE17315 ID=AT1TE17315; Name=AT1TE17315; Alias=ATTIRTA1
AT1TE17320	chr1:005359022	0.0	C/5359022-5359174	AT1TE17320 transposable_element AT1TE17320 ID=AT1TE17320; Name=AT1TE17320; Alias=RathE3_cons
AT1G15570.1	chr1:005363034	0.0	W/5363034-5363249,5363361-5363607,5363704-5363840,5363938-5364030,5364119-5364252,5364337-5364412,5364485-5364595,5364691-5364840,5364935-5365069,5365165-5365218	AT1G15570.1 CDS AT1G15570 ID=AT1G15570.1; Parent=AT1G15570; Name=AT1G15570.1; Note=CYCLIN A2%3B3; curator_summary=A2-type cyclin. Negatively regulates endocycles and acts as a key regulator of ploidy levels in Arabidopsis endoreduplication. Interacts physically with CDKA%3B1. Expressed preferentially in trichomes and young developing tissues.; conf_class=2; symbol=CYCA2%3B3; full_name=CYCLIN A2%3B3; computational_description=CYCLIN A2%3B3 (CYCA2%3B3)%3B CONTAINS InterPro DOMAIN/s: Cyclin%2C C-terminal (InterPro:IPR004367)%2C Cyclin (InterPro:IPR006670)%2C G2/mitotic-specific cyclin A (InterPro:IPR015453)%2C Cyclin-like (InterPro:IPR011028)%2C Cyclin-related (InterPro:IPR013763)%2C Cyclin%2C N-terminal (InterPro:IPR006671)%2C Cyclin%2C A/B/D/E (InterPro:IPR014400)%3B BEST Arabidopsis thaliana protein match is: Cyclin A2%3B4 (TAIR:AT1G80370.1)%3B Has 4146 Blast hits to 4144 proteins in 368 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1906%3B Fungi - 532%3B Plants - 1053%3B Viruses - 34%3B Other Eukaryotes - 621 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11971144, PMID:12777046, PMID:14535885, PMID:14645734, PMID:15610358, PMID:15546358, PMID:15908605, PMID:16415207, PMID:16489130, PMID:19458112, PMID:19626137, PMID:20023161, PMID:20018602, PMID:20706207, PMID:21772250, PMID:21992944, PMID:22167059, PMID:22167058, PMID:24687979, locus:2196563; locus_type=protein_coding
AT1G15580.1	chr1:005365764	0.0	C/5365764-5365824,5365913-5365997,5366115-5366460	AT1G15580.1 CDS AT1G15580 ID=AT1G15580.1; Parent=AT1G15580; Name=AT1G15580.1; Note=indole-3-acetic acid inducible 5; curator_summary=auxin induced protein; conf_class=2; symbol=IAA5; Alias=ATAUX2-27, AUX2-27, AUXIN-INDUCIBLE 2-27; full_name=indole-3-acetic acid inducible 5; computational_description=indole-3-acetic acid inducible 5 (IAA5)%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: response to auxin stimulus%2C response to cyclopentenone%2C response to brassinosteroid stimulus%3B LOCATED IN: nucleus%3B EXPRESSED IN: flower%3B EXPRESSED DURING: petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525)%2C AUX/IAA protein (InterPro:IPR003311)%3B BEST Arabidopsis thaliana protein match is: indole-3-acetic acid inducible 19 (TAIR:AT3G15540.1)%3B Has 1807 Blast hits to 1806 proteins in 79 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1806%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:7658471, PMID:2102379, PMID:11118137, PMID:12036262, PMID:16367964, PMID:16489122, PMID:17942448, PMID:18334669, PMID:18650403, PMID:20649941, PMID:22145973, PMID:23095998, PMID:23792371, locus:2196573; locus_type=protein_coding
AT1G15590.1	chr1:005367374	0.0	W/5367374-5367759,5367838-5367963,5368205-5368232	AT1G15590.1 CDS AT1G15590 ID=AT1G15590.1; Parent=AT1G15590; Name=AT1G15590.1; Note=E3 ubiquitin-protein ligase; conf_class=2; computational_description=BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G80400.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11115874, locus:2196633; locus_type=protein_coding
AT1G15590.2	chr1:005367374	0.0	W/5367374-5367759,5367838-5367963,5368205-5368232	AT1G15590.2 CDS AT1G15590 ID=AT1G15590.2; Parent=AT1G15590; Name=AT1G15590.2; Note=E3 ubiquitin-protein ligase; conf_class=4; computational_description=BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G80400.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:11115874, locus:2196633; locus_type=protein_coding
AT1G15600.1	chr1:005368923	0.0	W/5368923-5369278,5369352-5369480,5369584-5369761	AT1G15600.1 CDS AT1G15600 ID=AT1G15600.1; Parent=AT1G15600; Name=AT1G15600.1; Note=transmembrane protein; conf_class=1; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15620.1)%3B Has 227 Blast hits to 227 proteins in 15 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 227%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:2196598; locus_type=protein_coding
AT1G15610.1	chr1:005370793	0.0	W/5370793-5371184,5371261-5371386,5371466-5371679	AT1G15610.1 CDS AT1G15610 ID=AT1G15610.1; Parent=AT1G15610; Name=AT1G15610.1; Note=transmembrane protein; conf_class=2; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15630.1)%3B Has 129 Blast hits to 129 proteins in 15 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 0%3B Fungi - 0%3B Plants - 127%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2196613; locus_type=protein_coding
AT1G15610.2	chr1:005370793	0.0	W/5370793-5371184,5371261-5371386,5371493-5371679	AT1G15610.2 CDS AT1G15610 ID=AT1G15610.2; Parent=AT1G15610; Name=AT1G15610.2; Note=transmembrane protein; conf_class=5; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15630.1)%3B Has 129 Blast hits to 129 proteins in 15 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 0%3B Fungi - 0%3B Plants - 127%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=***; Dbxref=locus:2196613; locus_type=protein_coding
AT1TE17360	chr1:005372483	0.0	W/5372483-5373191	AT1TE17360 transposable_element AT1TE17360 ID=AT1TE17360; Name=AT1TE17360; Alias=ATREP3
AT1G15620.1	chr1:005373553	0.0	W/5373553-5373935,5374020-5374145,5374248-5374476	AT1G15620.1 CDS AT1G15620 ID=AT1G15620.1; Parent=AT1G15620; Name=AT1G15620.1; Note=transmembrane protein; conf_class=2; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15640.1)%3B Has 125 Blast hits to 124 proteins in 14 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 125%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17064408, locus:2196558; locus_type=protein_coding
AT1G15625.1	chr1:005374935	0.0	W/5374935-5375233,5375323-5375448,5375538-5375655	AT1G15625.1 CDS AT1G15625 ID=AT1G15625.1; Parent=AT1G15625; Name=AT1G15625.1; Note=E3 ubiquitin-protein ligase; locus_type=protein_coding
AT1TE17365	chr1:005375978	0.0	W/5375978-5376341	AT1TE17365 transposable_element AT1TE17365 ID=AT1TE17365; Name=AT1TE17365; Alias=BRODYAGA1A
AT1G15630.1	chr1:005376988	0.0	W/5376988-5377427,5377511-5377633,5377713-5377938	AT1G15630.1 CDS AT1G15630 ID=AT1G15630.1; Parent=AT1G15630; Name=AT1G15630.1; Note=transmembrane protein; conf_class=1; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15610.1)%3B Has 122 Blast hits to 122 proteins in 14 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 122%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:20736450, locus:2196553; locus_type=protein_coding
AT1TE17370	chr1:005378225	0.0	W/5378225-5378613	AT1TE17370 transposable_element AT1TE17370 ID=AT1TE17370; Name=AT1TE17370; Alias=ATHATN5
AT1G15640.1	chr1:005379077	0.0	W/5379077-5379480,5379565-5379690,5379790-5380027	AT1G15640.1 CDS AT1G15640 ID=AT1G15640.1; Parent=AT1G15640; Name=AT1G15640.1; Note=transmembrane protein; conf_class=2; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15620.1)%3B Has 154 Blast hits to 146 proteins in 13 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 154%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17061125, locus:2196568; locus_type=protein_coding
AT1G15640.2	chr1:005379077	0.0	W/5379077-5379480,5379565-5379724	AT1G15640.2 CDS AT1G15640 ID=AT1G15640.2; Parent=AT1G15640; Name=AT1G15640.2; Note=transmembrane protein; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15620.1)%3B Has 154 Blast hits to 146 proteins in 13 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 154%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=PMID:17061125, locus:2196568; locus_type=protein_coding
AT1G15650.1	chr1:005380907	0.0	W/5380907-5380988	AT1G15650.1 tRNA AT1G15650 ID=AT1G15650.1; Parent=AT1G15650; Note=tRNA-Ser; computational_description=tRNA-Ser (anticodon: AGA); Dbxref=PMID:8980477, PMID:23066098, PMID:8980477, locus:3691965; Name=AT1G15650.1; locus_type=pre_trna
AT1G15660.1	chr1:005381230	0.0	W/5381230-5381397,5381980-5382134,5382250-5382335,5382417-5382513,5382622-5382779,5382866-5383611,5383702-5383771,5383940-5384088,5384381-5384630,5384740-5384847,5384927-5385057	AT1G15660.1 CDS AT1G15660 ID=AT1G15660.1; Parent=AT1G15660; Name=AT1G15660.1; Note=centromere protein C; curator_summary=Encodes a homologue of the human centromeric protein C (CENP-C). CENP-C co-localizes with the 180 bp centromeric regions of chromosomes throughout the cell cycle%2C but does not completely cover the 180 bp regions.; conf_class=2; symbol=CENP-C; full_name=centromere protein C; computational_description=centromere protein C (CENP-C)%3B Has 380 Blast hits to 353 proteins in 129 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 108%3B Fungi - 26%3B Plants - 78%3B Viruses - 8%3B Other Eukaryotes - 154 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15329494, PMID:15345035, locus:2196578; locus_type=protein_coding
AT1G15670.1	chr1:005390119	0.0	W/5390119-5391198	AT1G15670.1 CDS AT1G15670 ID=AT1G15670.1; Parent=AT1G15670; Name=AT1G15670.1; Note=Galactose oxidase/kelch repeat superfamily protein; curator_summary=Encodes a member of a family of F-box proteins%2C called the KISS ME DEADLY (KMD) family%2C that targets type-B ARR proteins for degradation and is involved in the negative regulation of the cytokinin response. Also named as KFB1%2C a member of a group of Kelch repeat F-box proteins that negatively regulate phenylpropanoid biosynthesis by targeting the phenypropanoid biosynthesis enzyme phenylalanine ammonia-lyase.; conf_class=1; Alias=KFB01, Kelch repeat F-box 1, KMD2, KISS ME DEADLY 2; computational_description=Galactose oxidase/kelch repeat superfamily protein%3B CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch%2C beta-propeller (InterPro:IPR011043)%2C Kelch repeat type 1 (InterPro:IPR006652)%2C Kelch related (InterPro:IPR013089)%2C Kelch-type beta propeller (InterPro:IPR015915)%3B BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G80440.1)%3B Has 1241 Blast hits to 1194 proteins in 125 species: Archae - 6%3B Bacteria - 99%3B Metazoa - 399%3B Fungi - 6%3B Plants - 685%3B Viruses - 3%3B Other Eukaryotes - 43 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15345049, PMID:16489130, PMID:16766691, PMID:18650403, PMID:18805951, PMID:23720308, PMID:24363316, locus:2036119; locus_type=protein_coding
AT1TE17410	chr1:005391194	0.0	C/5391194-5391425	AT1TE17410 transposable_element AT1TE17410 ID=AT1TE17410; Name=AT1TE17410; Alias=ATREP5
AT1TE17415	chr1:005391427	0.0	W/5391427-5392691	AT1TE17415 transposable_element AT1TE17415 ID=AT1TE17415; Name=AT1TE17415; Alias=BRODYAGA2
AT1G15680.1	chr1:005393407	0.0	W/5393407-5394639	AT1G15680.1 CDS AT1G15680 ID=AT1G15680.1; Parent=AT1G15680; Name=AT1G15680.1; Note=F-box family protein; conf_class=9; computational_description=F-box family protein%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%3B BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G49990.1)%3B Has 875 Blast hits to 870 proteins in 38 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 875%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*; Dbxref=PMID:15266052, locus:2036124; locus_type=protein_coding
AT1G05177.1	chr1:005396178	0.0	C/5396178-5396631	AT1G05177.1 lnc_RNA AT1G05177 ID=AT1G05177.1; Parent=AT1G05177; Name=AT1G05177.1; locus_type=long_noncoding_rna
AT1G15690.1	chr1:005399115	0.0	W/5399115-5399376,5399575-5400149,5400237-5400616,5400717-5400803,5400885-5401215,5401346-5401756,5401838-5401897,5401979-5402185	AT1G15690.1 CDS AT1G15690 ID=AT1G15690.1; Parent=AT1G15690; Name=AT1G15690.1; Note=Inorganic H pyrophosphatase family protein; curator_summary=Encodes a H(+)-translocating (pyrophosphate-energized) inorganic pyrophosphatase (H(+)-PPase%3B EC 3.6.1.1) located in the vacuolar membrane. Expression is found in all tissues examined%2C including meristems and floral organ primordium. Expression is particularly enhanced in pollen%2C and is repressed by light. Over expression and loss of function phenotypes suggest AVP1 is involved in regulation of apoplastic pH and auxin transport. The effect on auxin transport likely involves effects of extracellular pH on subcellular localization of auxin efflux carriers such as PIN1.; conf_class=2; symbol=AVP1; computational_description=AVP1%3B FUNCTIONS IN: hydrogen-translocating pyrophosphatase activity%3B INVOLVED IN: response to water deprivation%2C response to salt stress%2C establishment or maintenance of transmembrane electrochemical gradient%2C leaf development%2C auxin polar transport%3B LOCATED IN: in 10 components%3B EXPRESSED IN: 28 plant structures%3B EXPRESSED DURING: 16 growth stages%3B CONTAINS InterPro DOMAIN/s: Inorganic H+ pyrophosphatase (InterPro:IPR004131)%3B BEST Arabidopsis thaliana protein match is: Inorganic H pyrophosphatase family protein (TAIR:AT1G16780.1)%3B Has 6470 Blast hits to 6448 proteins in 793 species: Archae - 67%3B Bacteria - 1322%3B Metazoa - 5%3B Fungi - 1%3B Plants - 304%3B Viruses - 0%3B Other Eukaryotes - 4771 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10806252, PMID:9990049, PMID:8541508, PMID:1311852, PMID:11442058, PMID:14581622, PMID:14671022, PMID:15295067, PMID:15539469, PMID:15907686, PMID:11572991, PMID:16210544, PMID:16361442, PMID:16618929, PMID:16940040, PMID:17113565, PMID:17103227, PMID:18094929, PMID:18650403, PMID:18775970, PMID:17711412, PMID:19930128, PMID:20040066, PMID:20025609, PMID:20492547, PMID:20460583, PMID:20605924, PMID:20736450, PMID:21205622, PMID:21612578, PMID:21600394, PMID:21849817, PMID:21841179, PMID:22195582, PMID:22301965, PMID:22782701, PMID:22895772, PMID:23055406, PMID:23334891, PMID:23757398, PMID:24002911, PMID:24261956, PMID:24723407, PMID:25681328, locus:2036134; locus_type=protein_coding
AT1G15690.2	chr1:005399115	0.0	W/5399115-5399376,5399575-5400149,5400237-5400616,5400717-5400803,5400885-5401215,5401346-5401608,5402155-5402185	AT1G15690.2 CDS AT1G15690 ID=AT1G15690.2; Parent=AT1G15690; Name=AT1G15690.2; Note=Inorganic H pyrophosphatase family protein; curator_summary=Encodes a H(+)-translocating (pyrophosphate-energized) inorganic pyrophosphatase (H(+)-PPase%3B EC 3.6.1.1) located in the vacuolar membrane. Expression is found in all tissues examined%2C including meristems and floral organ primordium. Expression is particularly enhanced in pollen%2C and is repressed by light. Over expression and loss of function phenotypes suggest AVP1 is involved in regulation of apoplastic pH and auxin transport. The effect on auxin transport likely involves effects of extracellular pH on subcellular localization of auxin efflux carriers such as PIN1.; conf_class=2; symbol=AVP1; computational_description=AVP1%3B FUNCTIONS IN: hydrogen-translocating pyrophosphatase activity%3B INVOLVED IN: response to water deprivation%2C response to salt stress%2C establishment or maintenance of transmembrane electrochemical gradient%2C leaf development%2C auxin polar transport%3B LOCATED IN: in 10 components%3B EXPRESSED IN: 28 plant structures%3B EXPRESSED DURING: 16 growth stages%3B CONTAINS InterPro DOMAIN/s: Inorganic H+ pyrophosphatase (InterPro:IPR004131)%3B BEST Arabidopsis thaliana protein match is: Inorganic H pyrophosphatase family protein (TAIR:AT1G16780.1)%3B Has 6470 Blast hits to 6448 proteins in 793 species: Archae - 67%3B Bacteria - 1322%3B Metazoa - 5%3B Fungi - 1%3B Plants - 304%3B Viruses - 0%3B Other Eukaryotes - 4771 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10806252, PMID:9990049, PMID:8541508, PMID:1311852, PMID:11442058, PMID:14581622, PMID:14671022, PMID:15295067, PMID:15539469, PMID:15907686, PMID:11572991, PMID:16210544, PMID:16361442, PMID:16618929, PMID:16940040, PMID:17113565, PMID:17103227, PMID:18094929, PMID:18650403, PMID:18775970, PMID:17711412, PMID:19930128, PMID:20040066, PMID:20025609, PMID:20492547, PMID:20460583, PMID:20605924, PMID:20736450, PMID:21205622, PMID:21612578, PMID:21600394, PMID:21849817, PMID:21841179, PMID:22195582, PMID:22301965, PMID:22782701, PMID:22895772, PMID:23055406, PMID:23334891, PMID:23757398, PMID:24002911, PMID:24261956, PMID:24723407, PMID:25681328, locus:2036134; locus_type=protein_coding
AT1G05183.1	chr1:005402553	0.0	W/5402553-5403853	AT1G05183.1 antisense_lncRNA AT1G05183 ID=AT1G05183.1; Parent=AT1G05183; Name=AT1G05183.1; description=Natural antisense transcript overlaps with AT1G15700; Note=Natural antisense transcript overlaps with AT1G15700; locus_type=antisense_long_noncoding_rna
AT1G15700.1	chr1:005402629	0.0	C/5402629-5403789	AT1G15700.1 CDS AT1G15700 ID=AT1G15700.1; Parent=AT1G15700; Name=AT1G15700.1; Note=ATPase%2C F1 complex%2C gamma subunit protein; curator_summary=One of two genes that encode the gamma subunit of Arabidopsis chloroplast ATP synthase. It is thought to be involved in the regulation of the ATP synthase activity.; conf_class=1; symbol=ATPC2; computational_description=ATPC2%3B FUNCTIONS IN: enzyme regulator activity%3B INVOLVED IN: ATP synthesis coupled proton transport%3B LOCATED IN: chloroplast ATP synthase complex%2C chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: ATPase%2C F1 complex%2C gamma subunit (InterPro:IPR000131)%3B BEST Arabidopsis thaliana protein match is: ATPase%2C F1 complex%2C gamma subunit protein (TAIR:AT4G04640.1)%3B Has 9547 Blast hits to 9544 proteins in 2715 species: Archae - 5%3B Bacteria - 5540%3B Metazoa - 280%3B Fungi - 148%3B Plants - 177%3B Viruses - 0%3B Other Eukaryotes - 3397 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:1826905, PMID:14576160, PMID:14593120, PMID:15632145, PMID:18566910, PMID:22328157, locus:2036149; locus_type=protein_coding
AT1G15710.1	chr1:005404505	0.0	W/5404505-5405581	AT1G15710.1 CDS AT1G15710 ID=AT1G15710.1; Parent=AT1G15710; Name=AT1G15710.1; Note=prephenate dehydrogenase family protein; conf_class=1; computational_description=prephenate dehydrogenase family protein%3B FUNCTIONS IN: prephenate dehydrogenase (NADP+) activity%3B INVOLVED IN: tyrosine biosynthetic process%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Prephenate dehydrogenase (InterPro:IPR003099)%2C Arogenate/prephenate dehydrogenase (InterPro:IPR012070)%3B BEST Arabidopsis thaliana protein match is: arogenate dehydrogenase (TAIR:AT5G34930.1)%3B Has 919 Blast hits to 907 proteins in 395 species: Archae - 81%3B Bacteria - 505%3B Metazoa - 3%3B Fungi - 100%3B Plants - 115%3B Viruses - 0%3B Other Eukaryotes - 115 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14576160, PMID:18375600, PMID:18775970, locus:2036164; locus_type=protein_coding
AT1G05187.1	chr1:005406134	0.0	C/5406134-5407357	AT1G05187.1 antisense_lncRNA AT1G05187 ID=AT1G05187.1; Parent=AT1G05187; Name=AT1G05187.1; description=Natural antisense transcript overlaps with AT1G15720; Note=Natural antisense transcript overlaps with AT1G15720; locus_type=antisense_long_noncoding_rna
AT1G15720.1	chr1:005406138	0.0	W/5406138-5407310	AT1G15720.1 CDS AT1G15720 ID=AT1G15720.1; Parent=AT1G15720; Name=AT1G15720.1; Note=TRF-like 5; curator_summary=Arabidopsis thaliana myb family transcription factor (At1g15720); conf_class=1; symbol=TRFL5; full_name=TRF-like 5; computational_description=TRF-like 5 (TRFL5)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%2C Homeodomain-related (InterPro:IPR012287)%3B BEST Arabidopsis thaliana protein match is: myb-like HTH transcriptional regulator family protein (TAIR:AT5G58340.2)%3B Has 513 Blast hits to 506 proteins in 61 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 35%3B Fungi - 41%3B Plants - 402%3B Viruses - 0%3B Other Eukaryotes - 35 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15364931, PMID:15923328, PMID:16463103, locus:2036174; locus_type=protein_coding
AT1G15730.1	chr1:005407535	0.0	C/5407535-5407672,5407781-5407885,5408031-5408116,5408203-5408318,5408501-5408592,5408688-5408738,5408903-5409099,5409200-5409380,5409459-5409524,5409623-5409937	AT1G15730.1 CDS AT1G15730 ID=AT1G15730.1; Parent=AT1G15730; Name=AT1G15730.1; Note=Cobalamin biosynthesis CobW-like protein; conf_class=2; computational_description=Cobalamin biosynthesis CobW-like protein%3B CONTAINS InterPro DOMAIN/s: Cobalamin (vitamin B12) biosynthesis CobW-like (InterPro:IPR003495)%2C Cobalamin (vitamin B12) biosynthesis CobW-like%2C C-terminal (InterPro:IPR011629)%3B BEST Arabidopsis thaliana protein match is: plastid transcriptionally active 17 (TAIR:AT1G80480.1)%3B Has 16369 Blast hits to 11834 proteins in 1861 species: Archae - 128%3B Bacteria - 8189%3B Metazoa - 1729%3B Fungi - 553%3B Plants - 409%3B Viruses - 6%3B Other Eukaryotes - 5355 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12383089, PMID:14576160, PMID:15923328, PMID:18650403, PMID:21365755, locus:2036189; locus_type=protein_coding
AT1G05193.1	chr1:005410578	0.0	C/5410578-5410827	AT1G05193.1 lnc_RNA AT1G05193 ID=AT1G05193.1; Parent=AT1G05193; Name=AT1G05193.1; locus_type=long_noncoding_rna
AT1G15740.1	chr1:005411509	0.0	W/5411509-5411724,5411801-5411929,5412013-5412220,5412342-5412488,5412607-5412681,5412757-5412828,5412927-5413001,5413096-5413167,5413264-5413335,5413445-5413516,5413594-5413665,5413752-5413895,5413981-5414052,5414136-5414282,5414360-5414544	AT1G15740.1 CDS AT1G15740 ID=AT1G15740.1; Parent=AT1G15740; Name=AT1G15740.1; Note=Leucine-rich repeat family protein; conf_class=2; computational_description=Leucine-rich repeat family protein%3B BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT4G23840.1)%3B Has 38052 Blast hits to 19856 proteins in 856 species: Archae - 6%3B Bacteria - 8624%3B Metazoa - 11681%3B Fungi - 680%3B Plants - 12072%3B Viruses - 79%3B Other Eukaryotes - 4910 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12586873, PMID:18231654, PMID:18650403, PMID:21477822, locus:2036199; locus_type=protein_coding
AT1G15750.1	chr1:005415086	0.0	C/5415086-5415299,5415428-5415594,5415677-5415865,5415950-5416045,5416143-5416271,5416353-5416532,5416606-5416716,5416808-5416954,5417031-5417126,5417207-5417347,5417439-5417801,5417885-5418076,5418159-5418232,5418308-5418377,5418459-5418568,5418661-5418942,5419042-5419165,5419237-5419414,5419512-5419670,5419782-5419895,5420000-5420179,5420280-5420359	AT1G15750.1 CDS AT1G15750 ID=AT1G15750.1; Parent=AT1G15750; Name=AT1G15750.1; Note=Transducin family protein / WD-40 repeat family protein; curator_summary=Encodes a protein with several WD40 repeats at the C-terminus and predicted protein-protein interaction domains at the N-terminus. Together with the TOPLESS-RELATED PROTEINS (TPRs)%2C it is thought to be involved in transcriptional repression of root-promoting genes in the top half of the embryo during the transition stage of embryogenesis. It can also interact with IAA12 through the EAR domain of IAA12 and the CTLH domain of TPL. The ability of IAA12 to repress transcription is diminished in a tpl-1 mutant background.; conf_class=2; symbol=TPL; Alias=WSIP1, WUS-INTERACTING PROTEIN 1; full_name=TOPLESS; computational_description=TOPLESS (TPL)%3B FUNCTIONS IN: protein binding%2C transcription repressor activity%2C protein homodimerization activity%3B INVOLVED IN: xylem and phloem pattern formation%2C response to auxin stimulus%2C primary shoot apical meristem specification%2C jasmonic acid mediated signaling pathway%3B LOCATED IN: cytosol%2C nucleus%3B EXPRESSED IN: 27 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782)%2C WD40 repeat%2C conserved site (InterPro:IPR019775)%2C WD40 repeat (InterPro:IPR001680)%2C CTLH%2C C-terminal LisH motif (InterPro:IPR006595)%2C WD40 repeat-like-containing domain (InterPro:IPR011046)%2C WD40-repeat-containing domain (InterPro:IPR017986)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C LisH dimerisation motif (InterPro:IPR006594)%2C WD40 repeat%2C subgroup (InterPro:IPR019781)%3B BEST Arabidopsis thaliana protein match is: TOPLESS-related 1 (TAIR:AT1G80490.2)%3B Has 22110 Blast hits to 13392 proteins in 605 species: Archae - 36%3B Bacteria - 4397%3B Metazoa - 7838%3B Fungi - 4804%3B Plants - 2241%3B Viruses - 6%3B Other Eukaryotes - 2788 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16461579, PMID:16763149, PMID:18433157, PMID:18650403, PMID:18775970, PMID:20190735, PMID:20360743, PMID:20493817, PMID:20736450, PMID:20813957, PMID:20935498, PMID:21963667, PMID:22065421, PMID:22136599, PMID:22327740, PMID:22476455, PMID:22995285, PMID:23034631, PMID:23444332, PMID:24416306, PMID:24876252, PMID:25378179, PMID:25527103, locus:2036204; locus_type=protein_coding
AT1G15750.2	chr1:005415086	0.0	C/5415086-5415299,5415428-5415594,5415677-5415865,5415950-5416045,5416143-5416271,5416353-5416532,5416606-5416716,5416808-5416954,5417031-5417126,5417207-5417347,5417439-5417801,5417885-5418076,5418159-5418232,5418308-5418377,5418459-5418568,5418661-5418942,5419042-5419165,5419237-5419414,5419512-5419670,5419782-5419895,5420000-5420179,5420280-5420359	AT1G15750.2 CDS AT1G15750 ID=AT1G15750.2; Parent=AT1G15750; Name=AT1G15750.2; Note=Transducin family protein / WD-40 repeat family protein; curator_summary=Encodes a protein with several WD40 repeats at the C-terminus and predicted protein-protein interaction domains at the N-terminus. Together with the TOPLESS-RELATED PROTEINS (TPRs)%2C it is thought to be involved in transcriptional repression of root-promoting genes in the top half of the embryo during the transition stage of embryogenesis. It can also interact with IAA12 through the EAR domain of IAA12 and the CTLH domain of TPL. The ability of IAA12 to repress transcription is diminished in a tpl-1 mutant background.; conf_class=2; symbol=TPL; Alias=WSIP1, WUS-INTERACTING PROTEIN 1; full_name=TOPLESS; computational_description=TOPLESS (TPL)%3B FUNCTIONS IN: protein binding%2C transcription repressor activity%2C protein homodimerization activity%3B INVOLVED IN: xylem and phloem pattern formation%2C response to auxin stimulus%2C primary shoot apical meristem specification%2C jasmonic acid mediated signaling pathway%3B LOCATED IN: cytosol%2C nucleus%3B EXPRESSED IN: 27 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782)%2C WD40 repeat%2C conserved site (InterPro:IPR019775)%2C WD40 repeat (InterPro:IPR001680)%2C CTLH%2C C-terminal LisH motif (InterPro:IPR006595)%2C WD40 repeat-like-containing domain (InterPro:IPR011046)%2C WD40-repeat-containing domain (InterPro:IPR017986)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C LisH dimerisation motif (InterPro:IPR006594)%2C WD40 repeat%2C subgroup (InterPro:IPR019781)%3B BEST Arabidopsis thaliana protein match is: TOPLESS-related 1 (TAIR:AT1G80490.2)%3B Has 22110 Blast hits to 13392 proteins in 605 species: Archae - 36%3B Bacteria - 4397%3B Metazoa - 7838%3B Fungi - 4804%3B Plants - 2241%3B Viruses - 6%3B Other Eukaryotes - 2788 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16461579, PMID:16763149, PMID:18433157, PMID:18650403, PMID:18775970, PMID:20190735, PMID:20360743, PMID:20493817, PMID:20736450, PMID:20813957, PMID:20935498, PMID:21963667, PMID:22065421, PMID:22136599, PMID:22327740, PMID:22476455, PMID:22995285, PMID:23034631, PMID:23444332, PMID:24416306, PMID:24876252, PMID:25378179, PMID:25527103, locus:2036204; locus_type=protein_coding
AT1G15750.3	chr1:005415086	0.0	C/5415086-5415299,5415428-5415594,5415677-5415865,5415950-5416045,5416143-5416271,5416353-5416532,5416606-5416716,5416808-5416954,5417031-5417126,5417207-5417347,5417439-5417801,5417885-5418076,5418159-5418232,5418308-5418377,5418459-5418568,5418661-5418942,5419042-5419165,5419237-5419414,5419512-5419670,5419782-5419895,5420000-5420179,5420280-5420359	AT1G15750.3 CDS AT1G15750 ID=AT1G15750.3; Parent=AT1G15750; Name=AT1G15750.3; Note=Transducin family protein / WD-40 repeat family protein; curator_summary=Encodes a protein with several WD40 repeats at the C-terminus and predicted protein-protein interaction domains at the N-terminus. Together with the TOPLESS-RELATED PROTEINS (TPRs)%2C it is thought to be involved in transcriptional repression of root-promoting genes in the top half of the embryo during the transition stage of embryogenesis. It can also interact with IAA12 through the EAR domain of IAA12 and the CTLH domain of TPL. The ability of IAA12 to repress transcription is diminished in a tpl-1 mutant background.; conf_class=2; symbol=TPL; Alias=WSIP1, WUS-INTERACTING PROTEIN 1; full_name=TOPLESS; computational_description=TOPLESS (TPL)%3B FUNCTIONS IN: protein binding%2C transcription repressor activity%2C protein homodimerization activity%3B INVOLVED IN: xylem and phloem pattern formation%2C response to auxin stimulus%2C primary shoot apical meristem specification%2C jasmonic acid mediated signaling pathway%3B LOCATED IN: cytosol%2C nucleus%3B EXPRESSED IN: 27 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782)%2C WD40 repeat%2C conserved site (InterPro:IPR019775)%2C WD40 repeat (InterPro:IPR001680)%2C CTLH%2C C-terminal LisH motif (InterPro:IPR006595)%2C WD40 repeat-like-containing domain (InterPro:IPR011046)%2C WD40-repeat-containing domain (InterPro:IPR017986)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C LisH dimerisation motif (InterPro:IPR006594)%2C WD40 repeat%2C subgroup (InterPro:IPR019781)%3B BEST Arabidopsis thaliana protein match is: TOPLESS-related 1 (TAIR:AT1G80490.2)%3B Has 22110 Blast hits to 13392 proteins in 605 species: Archae - 36%3B Bacteria - 4397%3B Metazoa - 7838%3B Fungi - 4804%3B Plants - 2241%3B Viruses - 6%3B Other Eukaryotes - 2788 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16461579, PMID:16763149, PMID:18433157, PMID:18650403, PMID:18775970, PMID:20190735, PMID:20360743, PMID:20493817, PMID:20736450, PMID:20813957, PMID:20935498, PMID:21963667, PMID:22065421, PMID:22136599, PMID:22327740, PMID:22476455, PMID:22995285, PMID:23034631, PMID:23444332, PMID:24416306, PMID:24876252, PMID:25378179, PMID:25527103, locus:2036204; locus_type=protein_coding
AT1G15750.4	chr1:005415086	0.0	C/5415086-5415299,5415428-5415594,5415677-5415865,5415950-5416045,5416143-5416271,5416353-5416532,5416606-5416716,5416808-5416954,5417031-5417126,5417207-5417347,5417439-5417801,5417885-5418076,5418159-5418232,5418308-5418377,5418459-5418568,5418661-5418942,5419042-5419165,5419237-5419414,5419512-5419670,5419782-5419895,5420000-5420179,5420280-5420359	AT1G15750.4 CDS AT1G15750 ID=AT1G15750.4; Parent=AT1G15750; Name=AT1G15750.4; Note=Transducin family protein / WD-40 repeat family protein; curator_summary=Encodes a protein with several WD40 repeats at the C-terminus and predicted protein-protein interaction domains at the N-terminus. Together with the TOPLESS-RELATED PROTEINS (TPRs)%2C it is thought to be involved in transcriptional repression of root-promoting genes in the top half of the embryo during the transition stage of embryogenesis. It can also interact with IAA12 through the EAR domain of IAA12 and the CTLH domain of TPL. The ability of IAA12 to repress transcription is diminished in a tpl-1 mutant background.; conf_class=2; symbol=TPL; Alias=WSIP1, WUS-INTERACTING PROTEIN 1; full_name=TOPLESS; computational_description=TOPLESS (TPL)%3B FUNCTIONS IN: protein binding%2C transcription repressor activity%2C protein homodimerization activity%3B INVOLVED IN: xylem and phloem pattern formation%2C response to auxin stimulus%2C primary shoot apical meristem specification%2C jasmonic acid mediated signaling pathway%3B LOCATED IN: cytosol%2C nucleus%3B EXPRESSED IN: 27 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782)%2C WD40 repeat%2C conserved site (InterPro:IPR019775)%2C WD40 repeat (InterPro:IPR001680)%2C CTLH%2C C-terminal LisH motif (InterPro:IPR006595)%2C WD40 repeat-like-containing domain (InterPro:IPR011046)%2C WD40-repeat-containing domain (InterPro:IPR017986)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C LisH dimerisation motif (InterPro:IPR006594)%2C WD40 repeat%2C subgroup (InterPro:IPR019781)%3B BEST Arabidopsis thaliana protein match is: TOPLESS-related 1 (TAIR:AT1G80490.2)%3B Has 22110 Blast hits to 13392 proteins in 605 species: Archae - 36%3B Bacteria - 4397%3B Metazoa - 7838%3B Fungi - 4804%3B Plants - 2241%3B Viruses - 6%3B Other Eukaryotes - 2788 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16461579, PMID:16763149, PMID:18433157, PMID:18650403, PMID:18775970, PMID:20190735, PMID:20360743, PMID:20493817, PMID:20736450, PMID:20813957, PMID:20935498, PMID:21963667, PMID:22065421, PMID:22136599, PMID:22327740, PMID:22476455, PMID:22995285, PMID:23034631, PMID:23444332, PMID:24416306, PMID:24876252, PMID:25378179, PMID:25527103, locus:2036204; locus_type=protein_coding
AT1G05197.1	chr1:005421188	0.0	W/5421188-5421431	AT1G05197.1 lnc_RNA AT1G05197 ID=AT1G05197.1; Parent=AT1G05197; Name=AT1G05197.1; locus_type=long_noncoding_rna
AT1TE17510	chr1:005422382	0.0	W/5422382-5422455	AT1TE17510 transposable_element AT1TE17510 ID=AT1TE17510; Name=AT1TE17510; Alias=HELITRONY1D
AT1TE17515	chr1:005422456	0.0	W/5422456-5423198	AT1TE17515 transposable_element AT1TE17515 ID=AT1TE17515; Name=AT1TE17515; Alias=ATREP10D
AT1G15757.1	chr1:005424242	0.0	C/5424242-5424396,5424480-5424576	AT1G15757.1 CDS AT1G15757 ID=AT1G15757.1; Parent=AT1G15757; Name=AT1G15757.1; Note=Molecular chaperone Hsp40/DnaJ family protein; curator_summary=Encodes a defensin-like (DEFL) family protein.; conf_class=3; computational_description=Molecular chaperone Hsp40/DnaJ family protein%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: Molecular chaperone%2C heat shock protein%2C Hsp40%2C DnaJ (InterPro:IPR015609)%3B BEST Arabidopsis thaliana protein match is: Molecular chaperone Hsp40/DnaJ family protein (TAIR:AT2G40995.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:1009023084; locus_type=protein_coding
AT1G15760.1	chr1:005425714	0.0	W/5425714-5426322	AT1G15760.1 CDS AT1G15760 ID=AT1G15760.1; Parent=AT1G15760; Name=AT1G15760.1; Note=Sterile alpha motif (SAM) domain-containing protein; conf_class=1; computational_description=Sterile alpha motif (SAM) domain-containing protein%3B CONTAINS InterPro DOMAIN/s: Sterile alpha motif homology (InterPro:IPR010993)%2C Sterile alpha motif%2C type 2 (InterPro:IPR011510)%3B BEST Arabidopsis thaliana protein match is: Sterile alpha motif (SAM) domain-containing protein (TAIR:AT1G80520.1)%3B Has 64 Blast hits to 64 proteins in 13 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 64%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12586873, PMID:20736450, locus:2036129; locus_type=protein_coding
AT1G15770.1	chr1:005426892	0.0	C/5426892-5427176,5427296-5427805,5428129-5428215	AT1G15770.1 CDS AT1G15770 ID=AT1G15770.1; Parent=AT1G15770; Name=AT1G15770.1; Note=mediator of RNA polymerase II transcription subunit; conf_class=4; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=***; Dbxref=locus:2036139; locus_type=protein_coding
AT1G15772.1	chr1:005428701	0.0	C/5428701-5428934,5429018-5429092,5429185-5429232	AT1G15772.1 CDS AT1G15772 ID=AT1G15772.1; Parent=AT1G15772; Name=AT1G15772.1; Note=mediator of RNA polymerase II transcription subunit; conf_class=1; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:4515102536; locus_type=protein_coding
AT1G15772.2	chr1:005428701	0.0	C/5428701-5428934,5429018-5429092,5429185-5429232	AT1G15772.2 CDS AT1G15772 ID=AT1G15772.2; Parent=AT1G15772; Name=AT1G15772.2; Note=mediator of RNA polymerase II transcription subunit; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=locus:4515102536; locus_type=protein_coding
AT1G15772.3	chr1:005428701	0.0	C/5428701-5428934,5429018-5429092,5429185-5429232	AT1G15772.3 CDS AT1G15772 ID=AT1G15772.3; Parent=AT1G15772; Name=AT1G15772.3; Note=mediator of RNA polymerase II transcription subunit; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=locus:4515102536; locus_type=protein_coding
AT1G15772.4	chr1:005428701	0.0	C/5428701-5428934,5429018-5429092,5429185-5429232	AT1G15772.4 CDS AT1G15772 ID=AT1G15772.4; Parent=AT1G15772; Name=AT1G15772.4; Note=mediator of RNA polymerase II transcription subunit; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=locus:4515102536; locus_type=protein_coding
AT1G15780.1	chr1:005430446	0.0	C/5430446-5430653,5430823-5430911,5431006-5431212,5431357-5431701,5431814-5433097,5433426-5433500,5433623-5433693,5433793-5435178,5435279-5435396,5435573-5435684,5435809-5435921	AT1G15780.1 CDS AT1G15780 ID=AT1G15780.1; Parent=AT1G15780; Name=AT1G15780.1; Note=mediator of RNA polymerase II transcription subunit 15a-like protein; conf_class=3; symbol=NRB4; full_name=Non-Recognition-of-BTH 4; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1)%3B Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30%3B Bacteria - 7385%3B Metazoa - 38639%3B Fungi - 11531%3B Plants - 7727%3B Viruses - 307%3B Other Eukaryotes - 38082 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12586873, PMID:17560376, PMID:18775970, PMID:18831797, PMID:22021418, PMID:23064321, locus:2036154; locus_type=protein_coding
AT1G15780.3	chr1:005430446	0.0	C/5430446-5430653,5430823-5430911,5431006-5431212,5431357-5431701,5431814-5433097,5433426-5433500,5433623-5433693,5433793-5435178,5435279-5435396,5435573-5435684,5435809-5435929,5436156-5436213	AT1G15780.3 CDS AT1G15780 ID=AT1G15780.3; Parent=AT1G15780; Name=AT1G15780.3; Note=mediator of RNA polymerase II transcription subunit 15a-like protein; symbol=NRB4; full_name=Non-Recognition-of-BTH 4; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1)%3B Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30%3B Bacteria - 7385%3B Metazoa - 38639%3B Fungi - 11531%3B Plants - 7727%3B Viruses - 307%3B Other Eukaryotes - 38082 (source: NCBI BLink).; Dbxref=PMID:12586873, PMID:17560376, PMID:18775970, PMID:18831797, PMID:22021418, PMID:23064321, locus:2036154; locus_type=protein_coding
AT1G15780.2	chr1:005430522	0.0	C/5430522-5430911,5431006-5431212,5431357-5431701,5431814-5433097,5433426-5433500,5433623-5433693,5433793-5435178,5435279-5435396,5435573-5435684,5435809-5435921	AT1G15780.2 CDS AT1G15780 ID=AT1G15780.2; Parent=AT1G15780; Name=AT1G15780.2; Note=mediator of RNA polymerase II transcription subunit 15a-like protein; symbol=NRB4; full_name=Non-Recognition-of-BTH 4; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1)%3B Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30%3B Bacteria - 7385%3B Metazoa - 38639%3B Fungi - 11531%3B Plants - 7727%3B Viruses - 307%3B Other Eukaryotes - 38082 (source: NCBI BLink).; Dbxref=PMID:12586873, PMID:17560376, PMID:18775970, PMID:18831797, PMID:22021418, PMID:23064321, locus:2036154; locus_type=protein_coding
AT1TE17550	chr1:005436579	0.0	W/5436579-5436720	AT1TE17550 transposable_element AT1TE17550 ID=AT1TE17550; Name=AT1TE17550; Alias=ATREP10D
AT1TE17555	chr1:005436721	0.0	C/5436721-5437872	AT1TE17555 transposable_element AT1TE17555 ID=AT1TE17555; Name=AT1TE17555; Alias=ATREP1
AT1TE17560	chr1:005437873	0.0	C/5437873-5438207	AT1TE17560 transposable_element AT1TE17560 ID=AT1TE17560; Name=AT1TE17560; Alias=HELITRONY1D
AT1G15790.1	chr1:005438477	0.0	C/5438477-5438521,5438755-5438866,5439004-5439097,5439285-5439393,5439540-5439651,5439753-5439820	AT1G15790.1 CDS AT1G15790 ID=AT1G15790.1; Parent=AT1G15790; Name=AT1G15790.1; Note=mediator of RNA polymerase II transcription subunit 15a-like protein; conf_class=2; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1)%3B Has 170 Blast hits to 94 proteins in 14 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 170%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18650403, PMID:18775970, locus:2036169; locus_type=protein_coding
AT1G15790.2	chr1:005438477	0.0	C/5438477-5438521,5438755-5438866,5439004-5439097,5439285-5439393,5439540-5439651,5439753-5439820	AT1G15790.2 CDS AT1G15790 ID=AT1G15790.2; Parent=AT1G15790; Name=AT1G15790.2; Note=mediator of RNA polymerase II transcription subunit 15a-like protein; conf_class=1; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1)%3B Has 170 Blast hits to 94 proteins in 14 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 170%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:18650403, PMID:18775970, locus:2036169; locus_type=protein_coding
AT1G15790.4	chr1:005438477	0.0	C/5438477-5438521,5438755-5438866,5439004-5439097,5439285-5439393,5439540-5439651,5439753-5439820	AT1G15790.4 CDS AT1G15790 ID=AT1G15790.4; Parent=AT1G15790; Name=AT1G15790.4; Note=mediator of RNA polymerase II transcription subunit 15a-like protein; Dbxref=PMID:18650403, PMID:18775970, locus:2036169; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1)%3B Has 170 Blast hits to 94 proteins in 14 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 170%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; locus_type=protein_coding
AT1G15790.5	chr1:005438477	0.0	C/5438477-5438539,5438755-5438866,5439004-5439097,5439285-5439393,5439540-5439651,5439753-5439820	AT1G15790.5 CDS AT1G15790 ID=AT1G15790.5; Parent=AT1G15790; Name=AT1G15790.5; Note=mediator of RNA polymerase II transcription subunit 15a-like protein; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1)%3B Has 170 Blast hits to 94 proteins in 14 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 170%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=PMID:18650403, PMID:18775970, locus:2036169; locus_type=protein_coding
AT1G15790.3	chr1:005438680	0.0	C/5438680-5438866,5439004-5439097,5439285-5439393,5439540-5439651,5439753-5439820	AT1G15790.3 CDS AT1G15790 ID=AT1G15790.3; Parent=AT1G15790; Name=AT1G15790.3; Note=mediator of RNA polymerase II transcription subunit 15a-like protein; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1)%3B Has 170 Blast hits to 94 proteins in 14 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 170%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=PMID:18650403, PMID:18775970, locus:2036169; locus_type=protein_coding
AT1G15800.1	chr1:005441425	0.0	C/5441425-5441526,5441607-5441675,5441753-5441815,5441914-5441967,5443249-5443584	AT1G15800.1 CDS AT1G15800 ID=AT1G15800.1; Parent=AT1G15800; Name=AT1G15800.1; Note=hypothetical protein; conf_class=2; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80610.1)%3B Has 56 Blast hits to 52 proteins in 9 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 56%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, locus:2036179; locus_type=protein_coding
AT1G15810.1	chr1:005444496	0.0	W/5444496-5445363,5445526-5445608,5445759-5445870,5445980-5446032,5446128-5446271	AT1G15810.1 CDS AT1G15810 ID=AT1G15810.1; Parent=AT1G15810; Name=AT1G15810.1; Note=S15/NS1%2C RNA-binding protein; conf_class=2; computational_description=S15/NS1%2C RNA-binding protein%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%3B LOCATED IN: small ribosomal subunit%2C ribosome%2C intracellular%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein S15 (InterPro:IPR000589)%2C Ribosomal protein S15%2C bacterial-type (InterPro:IPR005290)%2C S15/NS1%2C RNA-binding (InterPro:IPR009068)%3B BEST Arabidopsis thaliana protein match is: S15/NS1%2C RNA-binding protein (TAIR:AT1G80620.1)%3B Has 8219 Blast hits to 8219 proteins in 2793 species: Archae - 0%3B Bacteria - 5437%3B Metazoa - 107%3B Fungi - 123%3B Plants - 505%3B Viruses - 0%3B Other Eukaryotes - 2047 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12626114, PMID:16368778, PMID:18775970, locus:2036229; locus_type=protein_coding
AT1G05203.1	chr1:005445341	0.0	C/5445341-5445782	AT1G05203.1 antisense_lncRNA AT1G05203 ID=AT1G05203.1; Parent=AT1G05203; Name=AT1G05203.1; description=Natural antisense transcript overlaps with AT1G15810; Note=Natural antisense transcript overlaps with AT1G15810; locus_type=antisense_long_noncoding_rna
AT1G15820.1	chr1:005446685	0.0	C/5446685-5447234,5447450-5447676	AT1G15820.1 CDS AT1G15820 ID=AT1G15820.1; Parent=AT1G15820; Name=AT1G15820.1; Note=light harvesting complex photosystem II subunit 6; curator_summary=Lhcb6 protein (Lhcb6)%2C light harvesting complex of photosystem II.; conf_class=2; symbol=LHCB6; Alias=CP24; full_name=light harvesting complex photosystem II subunit 6; computational_description=light harvesting complex photosystem II subunit 6 (LHCB6)%3B FUNCTIONS IN: chlorophyll binding%3B INVOLVED IN: photosynthesis%2C nonphotochemical quenching%3B LOCATED IN: in 7 components%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344)%3B BEST Arabidopsis thaliana protein match is: photosystem I light harvesting complex gene 6 (TAIR:AT1G19150.1)%3B Has 2316 Blast hits to 2191 proteins in 220 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2%3B Fungi - 0%3B Plants - 1959%3B Viruses - 0%3B Other Eukaryotes - 355 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11601979, PMID:11340191, PMID:10366881, PMID:15322131, PMID:16461379, PMID:16524980, PMID:17114352, PMID:17229724, PMID:11743731, PMID:18381925, PMID:18513489, PMID:18650403, PMID:16170635, PMID:18486590, PMID:18990705, PMID:19307183, PMID:19903353, PMID:20197046, PMID:19700403, PMID:20584907, PMID:20494647, PMID:21156149, PMID:21668884, PMID:21844190, PMID:21641329, PMID:22143917, PMID:21803939, PMID:23274453, PMID:23534376, PMID:24561227, PMID:25291424, locus:2036209; locus_type=protein_coding
AT1G05207.1	chr1:005447212	0.0	W/5447212-5447569	AT1G05207.1 antisense_lncRNA AT1G05207 ID=AT1G05207.1; Parent=AT1G05207; Name=AT1G05207.1; description=Natural antisense transcript overlaps with AT1G15820; Note=Natural antisense transcript overlaps with AT1G15820; locus_type=antisense_long_noncoding_rna
AT1G15825.1	chr1:005448149	0.0	C/5448149-5448529	AT1G15825.1 CDS AT1G15825 ID=AT1G15825.1; Parent=AT1G15825; Name=AT1G15825.1; Note=hydroxyproline-rich glycoprotein family protein; conf_class=1; computational_description=hydroxyproline-rich glycoprotein family protein%3B Has 11879 Blast hits to 5508 proteins in 628 species: Archae - 56%3B Bacteria - 1752%3B Metazoa - 3397%3B Fungi - 734%3B Plants - 3913%3B Viruses - 567%3B Other Eukaryotes - 1460 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:504956215; locus_type=protein_coding
AT1G15830.1	chr1:005448726	0.0	W/5448726-5450177	AT1G15830.1 CDS AT1G15830 ID=AT1G15830.1; Parent=AT1G15830; Name=AT1G15830.1; Note=hypothetical protein; conf_class=4; computational_description=unknown protein%3B Has 165982 Blast hits to 57214 proteins in 2459 species: Archae - 263%3B Bacteria - 44622%3B Metazoa - 55751%3B Fungi - 10656%3B Plants - 17613%3B Viruses - 2527%3B Other Eukaryotes - 34550 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:18775970, PMID:20736450, locus:2036224; locus_type=protein_coding
AT1G15830.2	chr1:005448726	0.0	W/5448726-5449839,5449930-5450177	AT1G15830.2 CDS AT1G15830 ID=AT1G15830.2; Parent=AT1G15830; Name=AT1G15830.2; Note=hypothetical protein; computational_description=unknown protein%3B Has 165982 Blast hits to 57214 proteins in 2459 species: Archae - 263%3B Bacteria - 44622%3B Metazoa - 55751%3B Fungi - 10656%3B Plants - 17613%3B Viruses - 2527%3B Other Eukaryotes - 34550 (source: NCBI BLink).; Dbxref=PMID:18775970, PMID:20736450, locus:2036224; locus_type=protein_coding
AT1G15830.3	chr1:005448726	0.0	W/5448726-5449155,5449348-5450177	AT1G15830.3 CDS AT1G15830 ID=AT1G15830.3; Parent=AT1G15830; Name=AT1G15830.3; Note=hypothetical protein; computational_description=unknown protein%3B Has 165982 Blast hits to 57214 proteins in 2459 species: Archae - 263%3B Bacteria - 44622%3B Metazoa - 55751%3B Fungi - 10656%3B Plants - 17613%3B Viruses - 2527%3B Other Eukaryotes - 34550 (source: NCBI BLink).; Dbxref=PMID:18775970, PMID:20736450, locus:2036224; locus_type=protein_coding
AT1G15840.1	chr1:005451723	0.0	W/5451723-5451760,5451781-5452123	AT1G15840.1 CDS AT1G15840 ID=AT1G15840.1; Parent=AT1G15840; Name=AT1G15840.1; Note=hypothetical protein; conf_class=8; computational_description=unknown protein%3B Has 111484 Blast hits to 29940 proteins in 1985 species: Archae - 153%3B Bacteria - 40635%3B Metazoa - 31564%3B Fungi - 6444%3B Plants - 10232%3B Viruses - 1710%3B Other Eukaryotes - 20746 (source: NCBI BLink).; conf_rating=*; Dbxref=locus:2036144; locus_type=protein_coding
AT1TE17610	chr1:005451893	0.0	C/5451893-5452078	AT1TE17610 transposable_element AT1TE17610 ID=AT1TE17610; Name=AT1TE17610; Alias=VANDAL1
AT1G15850.1	chr1:005453245	0.0	C/5453245-5453442,5453529-5453606,5453723-5453809,5454029-5454088	AT1G15850.1 CDS AT1G15850 ID=AT1G15850.1; Parent=AT1G15850; Name=AT1G15850.1; Note=Transducin/WD40 repeat-like superfamily protein; conf_class=2; computational_description=Transducin/WD40 repeat-like superfamily protein%3B FUNCTIONS IN: nucleotide binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: flower%3B EXPRESSED DURING: petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782)%2C WD40 repeat-like-containing domain (InterPro:IPR011046)%2C WD40-repeat-containing domain (InterPro:IPR017986)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C WD40 repeat (InterPro:IPR001680)%2C WD40 repeat%2C subgroup (InterPro:IPR019781)%3B BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G80670.1)%3B Has 13036 Blast hits to 6879 proteins in 476 species: Archae - 26%3B Bacteria - 4384%3B Metazoa - 3193%3B Fungi - 2897%3B Plants - 1043%3B Viruses - 0%3B Other Eukaryotes - 1493 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:16831835, locus:2036159; locus_type=protein_coding
AT1G15860.1	chr1:005455055	0.0	W/5455055-5455127,5455429-5455513,5455652-5455726,5455818-5455854,5455964-5456047,5456139-5456199,5456304-5456410,5456504-5456569,5456646-5456741	AT1G15860.1 CDS AT1G15860 ID=AT1G15860.1; Parent=AT1G15860; Name=AT1G15860.1; Note=defective in cullin neddylation protein (DUF298); conf_class=2; computational_description=CONTAINS InterPro DOMAIN/s: Defective-in-cullin neddylation protein (InterPro:IPR014764)%2C Protein of unknown function DUF298 (InterPro:IPR005176)%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G12760.1)%3B Has 784 Blast hits to 784 proteins in 182 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 480%3B Fungi - 124%3B Plants - 115%3B Viruses - 0%3B Other Eukaryotes - 65 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17346352, PMID:18650403, PMID:18775970, locus:2036234; locus_type=protein_coding
AT1G15860.2	chr1:005455055	0.0	W/5455055-5455127,5455429-5455513,5455652-5455726,5455818-5455854,5455964-5456047,5456139-5456199,5456304-5456410,5456504-5456569,5456646-5456741	AT1G15860.2 CDS AT1G15860 ID=AT1G15860.2; Parent=AT1G15860; Name=AT1G15860.2; Note=defective in cullin neddylation protein (DUF298); conf_class=2; computational_description=CONTAINS InterPro DOMAIN/s: Defective-in-cullin neddylation protein (InterPro:IPR014764)%2C Protein of unknown function DUF298 (InterPro:IPR005176)%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G12760.1)%3B Has 784 Blast hits to 784 proteins in 182 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 480%3B Fungi - 124%3B Plants - 115%3B Viruses - 0%3B Other Eukaryotes - 65 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17346352, PMID:18650403, PMID:18775970, locus:2036234; locus_type=protein_coding
AT1G15860.3	chr1:005455055	0.0	W/5455055-5455127,5455429-5455513,5455652-5455726,5455818-5455854,5455964-5456047,5456139-5456199,5456304-5456437,5456504-5456569,5456646-5456741	AT1G15860.3 CDS AT1G15860 ID=AT1G15860.3; Parent=AT1G15860; Name=AT1G15860.3; Note=defective in cullin neddylation protein (DUF298); conf_class=3; computational_description=CONTAINS InterPro DOMAIN/s: Defective-in-cullin neddylation protein (InterPro:IPR014764)%2C Protein of unknown function DUF298 (InterPro:IPR005176)%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G12760.1)%3B Has 784 Blast hits to 784 proteins in 182 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 480%3B Fungi - 124%3B Plants - 115%3B Viruses - 0%3B Other Eukaryotes - 65 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17346352, PMID:18650403, PMID:18775970, locus:2036234; locus_type=protein_coding
AT1G15870.1	chr1:005457153	0.0	W/5457153-5457395,5457666-5457988,5458083-5458245	AT1G15870.1 CDS AT1G15870 ID=AT1G15870.1; Parent=AT1G15870; Name=AT1G15870.1; Note=Mitochondrial glycoprotein family protein; conf_class=1; computational_description=Mitochondrial glycoprotein family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: mitochondrial matrix%3B EXPRESSED IN: 13 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Mitochondrial glycoprotein (InterPro:IPR003428)%3B BEST Arabidopsis thaliana protein match is: Mitochondrial glycoprotein family protein (TAIR:AT1G80720.1)%3B Has 432 Blast hits to 432 proteins in 135 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 4%3B Fungi - 119%3B Plants - 216%3B Viruses - 0%3B Other Eukaryotes - 93 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:20226671, locus:2036184; locus_type=protein_coding
AT1G15880.1	chr1:005458718	0.0	C/5458718-5458831,5458954-5459067,5459198-5459362,5459561-5459800,5460051-5460089	AT1G15880.1 CDS AT1G15880 ID=AT1G15880.1; Parent=AT1G15880; Name=AT1G15880.1; Note=golgi snare 11; curator_summary=Golgi SNARE 11 protein (GOS11); conf_class=1; symbol=GOS11; Alias=atgos11; full_name=golgi snare 11; computational_description=golgi snare 11 (GOS11)%3B BEST Arabidopsis thaliana protein match is: golgi snare 12 (TAIR:AT2G45200.1)%3B Has 412 Blast hits to 412 proteins in 171 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 161%3B Fungi - 123%3B Plants - 99%3B Viruses - 0%3B Other Eukaryotes - 29 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11115874, PMID:10831610, PMID:15342965, PMID:18775970, PMID:22253603, locus:2036194; locus_type=protein_coding
AT1G15885.1	chr1:005460550	0.0	W/5460550-5460690,5460970-5461095	AT1G15885.1 CDS AT1G15885 ID=AT1G15885.1; Parent=AT1G15885; Name=AT1G15885.1; Note=hypothetical protein; conf_class=1; computational_description=unknown protein%3B Has 5 Blast hits to 5 proteins in 1 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 5%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:4010713446; locus_type=protein_coding
AT1G15890.1	chr1:005461406	0.0	W/5461406-5463961	AT1G15890.1 CDS AT1G15890 ID=AT1G15890.1; Parent=AT1G15890; Name=AT1G15890.1; Note=Disease resistance protein (CC-NBS-LRR class) family; conf_class=1; computational_description=Disease resistance protein (CC-NBS-LRR class) family%3B FUNCTIONS IN: ATP binding%3B INVOLVED IN: N-terminal protein myristoylation%2C apoptosis%2C defense response%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 8 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182)%2C Leucine-rich repeat (InterPro:IPR001611)%2C Disease resistance protein (InterPro:IPR000767)%3B BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G43730.1)%3B Has 17730 Blast hits to 16510 proteins in 695 species: Archae - 12%3B Bacteria - 829%3B Metazoa - 2844%3B Fungi - 202%3B Plants - 13567%3B Viruses - 0%3B Other Eukaryotes - 276 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12912986, PMID:17956627, PMID:18417639, PMID:23517122, locus:2036214; locus_type=protein_coding
AT1G15890.2	chr1:005461886	0.0	W/5461886-5463961	AT1G15890.2 CDS AT1G15890 ID=AT1G15890.2; Parent=AT1G15890; Name=AT1G15890.2; Note=Disease resistance protein (CC-NBS-LRR class) family; computational_description=Disease resistance protein (CC-NBS-LRR class) family%3B FUNCTIONS IN: ATP binding%3B INVOLVED IN: N-terminal protein myristoylation%2C apoptosis%2C defense response%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 8 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182)%2C Leucine-rich repeat (InterPro:IPR001611)%2C Disease resistance protein (InterPro:IPR000767)%3B BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G43730.1)%3B Has 17730 Blast hits to 16510 proteins in 695 species: Archae - 12%3B Bacteria - 829%3B Metazoa - 2844%3B Fungi - 202%3B Plants - 13567%3B Viruses - 0%3B Other Eukaryotes - 276 (source: NCBI BLink).; Dbxref=PMID:12912986, PMID:17956627, PMID:18417639, PMID:23517122, locus:2036214; locus_type=protein_coding
AT1G15900.1	chr1:005464356	0.0	W/5464356-5464697	AT1G15900.1 CDS AT1G15900 ID=AT1G15900.1; Parent=AT1G15900; Name=AT1G15900.1; Note=transmembrane protein; conf_class=1; computational_description=unknown protein%3B Has 19 Blast hits to 19 proteins in 10 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 0%3B Fungi - 0%3B Plants - 15%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:23517122, locus:2036219; locus_type=protein_coding
AT1G15910.1	chr1:005465951	0.0	W/5465951-5466851,5466933-5467114,5467228-5467317,5467431-5467718,5468073-5468285,5468493-5468723	AT1G15910.1 CDS AT1G15910 ID=AT1G15910.1; Parent=AT1G15910; Name=AT1G15910.1; Note=XH/XS domain-containing protein; curator_summary=Belongs to a subgroup of SGS3-like proteins that act redundantly in RNA-directed DNA methylation: AT1G15910 (FDM1)%2C AT4G00380 (FDM2)%2C AT3G12550 (FDM3)%2C AT1G13790 (FDM4)%2C AT1G80790 (FDM5).; conf_class=4; symbol=FDM1; Alias=IDNL1, INVOLVED IN DE NOVO 2 (IDN2) - LIKE 1, IDP1, IDN2 PARALOG 1; full_name=factor of DNA methylation 1; computational_description=XH/XS domain-containing protein%3B CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380)%2C Domain of unknown function XH (InterPro:IPR005379)%2C Domain of unknown function%2C putative Zinc finger%2C XS/XH (InterPro:IPR005381)%3B BEST Arabidopsis thaliana protein match is: XH/XS domain-containing protein (TAIR:AT4G00380.1)%3B Has 48628 Blast hits to 29972 proteins in 1836 species: Archae - 567%3B Bacteria - 5701%3B Metazoa - 24120%3B Fungi - 3416%3B Plants - 1878%3B Viruses - 163%3B Other Eukaryotes - 12783 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:22302148, PMID:22592791, PMID:22570638, PMID:22757778, PMID:23313553, PMID:24845501, locus:2200487; locus_type=protein_coding
AT1G15920.1	chr1:005469962	0.0	W/5469962-5470822	AT1G15920.1 CDS AT1G15920 ID=AT1G15920.1; Parent=AT1G15920; Name=AT1G15920.1; Note=Polynucleotidyl transferase%2C ribonuclease H-like superfamily protein; conf_class=1; computational_description=Polynucleotidyl transferase%2C ribonuclease H-like superfamily protein%3B FUNCTIONS IN: ribonuclease activity%2C nucleic acid binding%3B INVOLVED IN: RNA modification%3B LOCATED IN: nucleus%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941)%2C Polynucleotidyl transferase%2C ribonuclease H fold (InterPro:IPR012337)%3B BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase%2C ribonuclease H-like superfamily protein (TAIR:AT2G32070.1)%3B Has 915 Blast hits to 901 proteins in 224 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 254%3B Fungi - 151%3B Plants - 388%3B Viruses - 0%3B Other Eukaryotes - 122 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:18650403, PMID:18775970, PMID:19955262, PMID:20736450, locus:2200532; locus_type=protein_coding
AT1G15920.2	chr1:005469962	0.0	W/5469962-5470822	AT1G15920.2 CDS AT1G15920 ID=AT1G15920.2; Parent=AT1G15920; Name=AT1G15920.2; Note=Polynucleotidyl transferase%2C ribonuclease H-like superfamily protein; conf_class=4; computational_description=Polynucleotidyl transferase%2C ribonuclease H-like superfamily protein%3B FUNCTIONS IN: ribonuclease activity%2C nucleic acid binding%3B INVOLVED IN: RNA modification%3B LOCATED IN: nucleus%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941)%2C Polynucleotidyl transferase%2C ribonuclease H fold (InterPro:IPR012337)%3B BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase%2C ribonuclease H-like superfamily protein (TAIR:AT2G32070.1)%3B Has 915 Blast hits to 901 proteins in 224 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 254%3B Fungi - 151%3B Plants - 388%3B Viruses - 0%3B Other Eukaryotes - 122 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:18650403, PMID:18775970, PMID:19955262, PMID:20736450, locus:2200532; locus_type=protein_coding
AT1G15930.1	chr1:005471702	0.0	W/5471702-5471709,5472098-5472398,5472520-5472585,5472682-5472741	AT1G15930.1 CDS AT1G15930 ID=AT1G15930.1; Parent=AT1G15930; Name=AT1G15930.1; Note=Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; conf_class=2; computational_description=Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: response to cadmium ion%2C response to salt stress%2C translation%3B LOCATED IN: cytosolic small ribosomal subunit%2C cytosolic ribosome%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein S12e (InterPro:IPR000530)%2C Ribosomal protein L7Ae/L30e/S12e/Gadd45 (InterPro:IPR004038)%3B BEST Arabidopsis thaliana protein match is: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (TAIR:AT2G32060.2)%3B Has 1044 Blast hits to 1044 proteins in 336 species: Archae - 248%3B Bacteria - 0%3B Metazoa - 315%3B Fungi - 181%3B Plants - 131%3B Viruses - 0%3B Other Eukaryotes - 169 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11115874, PMID:11598216, PMID:11739776, PMID:15821981, PMID:16502469, PMID:17934214, PMID:18650403, PMID:22195043, locus:2200537; locus_type=protein_coding
AT1G15930.2	chr1:005471702	0.0	W/5471702-5471709,5472098-5472398,5472520-5472585,5472682-5472741	AT1G15930.2 CDS AT1G15930 ID=AT1G15930.2; Parent=AT1G15930; Name=AT1G15930.2; Note=Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; conf_class=2; computational_description=Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: response to cadmium ion%2C response to salt stress%2C translation%3B LOCATED IN: cytosolic small ribosomal subunit%2C cytosolic ribosome%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein S12e (InterPro:IPR000530)%2C Ribosomal protein L7Ae/L30e/S12e/Gadd45 (InterPro:IPR004038)%3B BEST Arabidopsis thaliana protein match is: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (TAIR:AT2G32060.2)%3B Has 1044 Blast hits to 1044 proteins in 336 species: Archae - 248%3B Bacteria - 0%3B Metazoa - 315%3B Fungi - 181%3B Plants - 131%3B Viruses - 0%3B Other Eukaryotes - 169 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11115874, PMID:11598216, PMID:11739776, PMID:15821981, PMID:16502469, PMID:17934214, PMID:18650403, PMID:22195043, locus:2200537; locus_type=protein_coding
AT1G15940.1	chr1:005473672	0.0	W/5473672-5473785,5474095-5474298,5474414-5474595,5474688-5474814,5474899-5475096,5475218-5475268,5475353-5476060,5476147-5476242,5476328-5476401,5476485-5476536,5476626-5476712,5476801-5476844,5476933-5477007,5477090-5478050	AT1G15940.1 CDS AT1G15940 ID=AT1G15940.1; Parent=AT1G15940; Name=AT1G15940.1; Note=Tudor/PWWP/MBT superfamily protein; conf_class=2; computational_description=Tudor/PWWP/MBT superfamily protein%3B FUNCTIONS IN: binding%3B INVOLVED IN: biological_process unknown%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024)%3B BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT1G80810.1)%3B Has 113244 Blast hits to 64070 proteins in 2877 species: Archae - 468%3B Bacteria - 17745%3B Metazoa - 45816%3B Fungi - 13599%3B Plants - 5330%3B Viruses - 622%3B Other Eukaryotes - 29664 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18650403, PMID:18775970, locus:2200557; locus_type=protein_coding
AT1G15950.1	chr1:005478855	0.0	W/5478855-5478987,5479109-5479263,5479792-5479977,5480154-5480506,5481708-5481915	AT1G15950.1 CDS AT1G15950 ID=AT1G15950.1; Parent=AT1G15950; Name=AT1G15950.1; Note=cinnamoyl coa reductase 1; curator_summary=Encodes a cinnamoyl CoA reductase. Involved in lignin biosynthesis.; conf_class=2; symbol=CCR1; Alias=ATCCR1, IRX4, IRREGULAR XYLEM 4; full_name=cinnamoyl coa reductase 1; computational_description=cinnamoyl coa reductase 1 (CCR1)%3B CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509)%2C NAD(P)-binding domain (InterPro:IPR016040)%3B BEST Arabidopsis thaliana protein match is: cinnamoyl coa reductase (TAIR:AT1G80820.1)%3B Has 12077 Blast hits to 12065 proteins in 1900 species: Archae - 220%3B Bacteria - 5385%3B Metazoa - 413%3B Fungi - 986%3B Plants - 2545%3B Viruses - 54%3B Other Eukaryotes - 2474 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11389761, PMID:11430991, PMID:16122934, PMID:16153410, PMID:17092316, PMID:19269997, PMID:19674336, PMID:20829305, PMID:23012438, PMID:22350089, PMID:23698629, PMID:24096341, PMID:23950498, PMID:25506770, locus:2200427; locus_type=protein_coding
AT1G15950.2	chr1:005478855	0.0	W/5478855-5478987,5479109-5479263,5479792-5479977,5480154-5480506,5481708-5481816,5481872-5481949	AT1G15950.2 CDS AT1G15950 ID=AT1G15950.2; Parent=AT1G15950; Name=AT1G15950.2; Note=cinnamoyl coa reductase 1; curator_summary=Encodes a cinnamoyl CoA reductase. Involved in lignin biosynthesis.; conf_class=2; symbol=CCR1; Alias=ATCCR1, IRX4, IRREGULAR XYLEM 4; full_name=cinnamoyl coa reductase 1; computational_description=cinnamoyl coa reductase 1 (CCR1)%3B CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509)%2C NAD(P)-binding domain (InterPro:IPR016040)%3B BEST Arabidopsis thaliana protein match is: cinnamoyl coa reductase (TAIR:AT1G80820.1)%3B Has 12077 Blast hits to 12065 proteins in 1900 species: Archae - 220%3B Bacteria - 5385%3B Metazoa - 413%3B Fungi - 986%3B Plants - 2545%3B Viruses - 54%3B Other Eukaryotes - 2474 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11389761, PMID:11430991, PMID:16122934, PMID:16153410, PMID:17092316, PMID:19269997, PMID:19674336, PMID:20829305, PMID:23012438, PMID:22350089, PMID:23698629, PMID:24096341, PMID:23950498, PMID:25506770, locus:2200427; locus_type=protein_coding
AT1G15950.3	chr1:005478855	0.0	W/5478855-5478987,5479109-5479263,5479792-5479977,5480154-5480506,5481708-5481915	AT1G15950.3 CDS AT1G15950 ID=AT1G15950.3; Parent=AT1G15950; Name=AT1G15950.3; Note=cinnamoyl coa reductase 1; symbol=CCR1; Alias=ATCCR1, IRX4, IRREGULAR XYLEM 4; full_name=cinnamoyl coa reductase 1; Dbxref=PMID:11389761, PMID:11430991, PMID:16122934, PMID:16153410, PMID:17092316, PMID:19269997, PMID:19674336, PMID:20829305, PMID:23012438, PMID:22350089, PMID:23698629, PMID:24096341, PMID:23950498, PMID:25506770, locus:2200427; curator_summary=Encodes a cinnamoyl CoA reductase. Involved in lignin biosynthesis.; computational_description=cinnamoyl coa reductase 1 (CCR1)%3B CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509)%2C NAD(P)-binding domain (InterPro:IPR016040)%3B BEST Arabidopsis thaliana protein match is: cinnamoyl coa reductase (TAIR:AT1G80820.1)%3B Has 12077 Blast hits to 12065 proteins in 1900 species: Archae - 220%3B Bacteria - 5385%3B Metazoa - 413%3B Fungi - 986%3B Plants - 2545%3B Viruses - 54%3B Other Eukaryotes - 2474 (source: NCBI BLink).; locus_type=protein_coding
AT1G15950.4	chr1:005478855	0.0	W/5478855-5478987,5479109-5479263,5479792-5479977,5480154-5480506,5480837-5480894	AT1G15950.4 CDS AT1G15950 ID=AT1G15950.4; Parent=AT1G15950; Name=AT1G15950.4; Note=cinnamoyl coa reductase 1; symbol=CCR1; Alias=ATCCR1, IRX4, IRREGULAR XYLEM 4; full_name=cinnamoyl coa reductase 1; curator_summary=Encodes a cinnamoyl CoA reductase. Involved in lignin biosynthesis.; computational_description=cinnamoyl coa reductase 1 (CCR1)%3B CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509)%2C NAD(P)-binding domain (InterPro:IPR016040)%3B BEST Arabidopsis thaliana protein match is: cinnamoyl coa reductase (TAIR:AT1G80820.1)%3B Has 12077 Blast hits to 12065 proteins in 1900 species: Archae - 220%3B Bacteria - 5385%3B Metazoa - 413%3B Fungi - 986%3B Plants - 2545%3B Viruses - 54%3B Other Eukaryotes - 2474 (source: NCBI BLink).; Dbxref=PMID:11389761, PMID:11430991, PMID:16122934, PMID:16153410, PMID:17092316, PMID:19269997, PMID:19674336, PMID:20829305, PMID:23012438, PMID:22350089, PMID:23698629, PMID:24096341, PMID:23950498, PMID:25506770, locus:2200427; locus_type=protein_coding
AT1G15950.5	chr1:005478855	0.0	W/5478855-5478987,5479109-5479263,5479792-5479977,5480154-5480506,5480865-5480889	AT1G15950.5 CDS AT1G15950 ID=AT1G15950.5; Parent=AT1G15950; Name=AT1G15950.5; Note=cinnamoyl coa reductase 1; symbol=CCR1; Alias=ATCCR1, IRX4, IRREGULAR XYLEM 4; full_name=cinnamoyl coa reductase 1; curator_summary=Encodes a cinnamoyl CoA reductase. Involved in lignin biosynthesis.; computational_description=cinnamoyl coa reductase 1 (CCR1)%3B CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509)%2C NAD(P)-binding domain (InterPro:IPR016040)%3B BEST Arabidopsis thaliana protein match is: cinnamoyl coa reductase (TAIR:AT1G80820.1)%3B Has 12077 Blast hits to 12065 proteins in 1900 species: Archae - 220%3B Bacteria - 5385%3B Metazoa - 413%3B Fungi - 986%3B Plants - 2545%3B Viruses - 54%3B Other Eukaryotes - 2474 (source: NCBI BLink).; Dbxref=PMID:11389761, PMID:11430991, PMID:16122934, PMID:16153410, PMID:17092316, PMID:19269997, PMID:19674336, PMID:20829305, PMID:23012438, PMID:22350089, PMID:23698629, PMID:24096341, PMID:23950498, PMID:25506770, locus:2200427; locus_type=protein_coding
AT1G15950.6	chr1:005478855	0.0	W/5478855-5478987,5479109-5479263,5479792-5479977,5480154-5480510	AT1G15950.6 CDS AT1G15950 ID=AT1G15950.6; Parent=AT1G15950; Name=AT1G15950.6; Note=cinnamoyl coa reductase 1; symbol=CCR1; Alias=ATCCR1, IRX4, IRREGULAR XYLEM 4; full_name=cinnamoyl coa reductase 1; curator_summary=Encodes a cinnamoyl CoA reductase. Involved in lignin biosynthesis.; computational_description=cinnamoyl coa reductase 1 (CCR1)%3B CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509)%2C NAD(P)-binding domain (InterPro:IPR016040)%3B BEST Arabidopsis thaliana protein match is: cinnamoyl coa reductase (TAIR:AT1G80820.1)%3B Has 12077 Blast hits to 12065 proteins in 1900 species: Archae - 220%3B Bacteria - 5385%3B Metazoa - 413%3B Fungi - 986%3B Plants - 2545%3B Viruses - 54%3B Other Eukaryotes - 2474 (source: NCBI BLink).; Dbxref=PMID:11389761, PMID:11430991, PMID:16122934, PMID:16153410, PMID:17092316, PMID:19269997, PMID:19674336, PMID:20829305, PMID:23012438, PMID:22350089, PMID:23698629, PMID:24096341, PMID:23950498, PMID:25506770, locus:2200427; locus_type=protein_coding
AT1G05213.1	chr1:005479274	0.0	C/5479274-5481730	AT1G05213.1 antisense_lncRNA AT1G05213 ID=AT1G05213.1; Parent=AT1G05213; Name=AT1G05213.1; description=Natural antisense transcript overlaps with AT1G15950; Note=Natural antisense transcript overlaps with AT1G15950; locus_type=antisense_long_noncoding_rna
AT1G15950.7	chr1:005479798	0.0	W/5479798-5479977,5480154-5480506,5481708-5481915	AT1G15950.7 CDS AT1G15950 ID=AT1G15950.7; Parent=AT1G15950; Name=AT1G15950.7; Note=cinnamoyl coa reductase 1; symbol=CCR1; Alias=ATCCR1, IRX4, IRREGULAR XYLEM 4; full_name=cinnamoyl coa reductase 1; curator_summary=Encodes a cinnamoyl CoA reductase. Involved in lignin biosynthesis.; computational_description=cinnamoyl coa reductase 1 (CCR1)%3B CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509)%2C NAD(P)-binding domain (InterPro:IPR016040)%3B BEST Arabidopsis thaliana protein match is: cinnamoyl coa reductase (TAIR:AT1G80820.1)%3B Has 12077 Blast hits to 12065 proteins in 1900 species: Archae - 220%3B Bacteria - 5385%3B Metazoa - 413%3B Fungi - 986%3B Plants - 2545%3B Viruses - 54%3B Other Eukaryotes - 2474 (source: NCBI BLink).; Dbxref=PMID:11389761, PMID:11430991, PMID:16122934, PMID:16153410, PMID:17092316, PMID:19269997, PMID:19674336, PMID:20829305, PMID:23012438, PMID:22350089, PMID:23698629, PMID:24096341, PMID:23950498, PMID:25506770, locus:2200427; locus_type=protein_coding
AT1G15960.1	chr1:005482202	0.0	C/5482202-5482519,5482612-5482707,5482790-5482921,5482997-5483101,5483198-5483371,5483447-5483516,5483588-5483769,5483847-5483956,5484076-5484180,5484314-5484392,5484480-5484520,5484607-5484685,5484974-5485066	AT1G15960.1 CDS AT1G15960 ID=AT1G15960.1; Parent=AT1G15960; Name=AT1G15960.1; Note=NRAMP metal ion transporter 6; curator_summary=member of Nramp2 family; conf_class=2; symbol=NRAMP6; Alias=ATNRAMP6; full_name=NRAMP metal ion transporter 6; computational_description=NRAMP metal ion transporter 6 (NRAMP6)%3B FUNCTIONS IN: inorganic anion transmembrane transporter activity%2C metal ion transmembrane transporter activity%3B INVOLVED IN: cellular metal ion homeostasis%2C metal ion transport%3B LOCATED IN: membrane%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: LP.06 six leaves visible%2C LP.04 four leaves visible%2C 4 anthesis%2C petal differentiation and expansion stage%2C LP.08 eight leaves visible%3B CONTAINS InterPro DOMAIN/s: Natural resistance-associated macrophage protein (InterPro:IPR001046)%3B BEST Arabidopsis thaliana protein match is: natural resistance-associated macrophage protein 1 (TAIR:AT1G80830.1)%3B Has 5518 Blast hits to 5467 proteins in 1679 species: Archae - 118%3B Bacteria - 4110%3B Metazoa - 356%3B Fungi - 271%3B Plants - 336%3B Viruses - 0%3B Other Eukaryotes - 327 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11500563, PMID:14730065, PMID:15531708, PMID:17337631, PMID:19545236, locus:2200437; locus_type=protein_coding
AT1G15970.1	chr1:005486544	0.0	C/5486544-5486855,5486959-5487100,5487215-5487298,5487386-5487443,5488032-5488494	AT1G15970.1 CDS AT1G15970 ID=AT1G15970.1; Parent=AT1G15970; Name=AT1G15970.1; Note=DNA glycosylase superfamily protein; conf_class=2; computational_description=DNA glycosylase superfamily protein%3B FUNCTIONS IN: DNA-3-methyladenine glycosylase I activity%2C catalytic activity%3B INVOLVED IN: DNA repair%2C base-excision repair%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257)%2C Methyladenine glycosylase (InterPro:IPR005019)%3B BEST Arabidopsis thaliana protein match is: DNA glycosylase superfamily protein (TAIR:AT1G80850.1)%3B Has 3684 Blast hits to 3684 proteins in 1581 species: Archae - 10%3B Bacteria - 3170%3B Metazoa - 10%3B Fungi - 2%3B Plants - 164%3B Viruses - 0%3B Other Eukaryotes - 328 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:20736450, locus:2200447; locus_type=protein_coding
AT1G15970.2	chr1:005486544	0.0	C/5486544-5486855,5486959-5487100,5487215-5487298,5487386-5487443,5488032-5488494	AT1G15970.2 CDS AT1G15970 ID=AT1G15970.2; Parent=AT1G15970; Name=AT1G15970.2; Note=DNA glycosylase superfamily protein; Dbxref=PMID:20736450, locus:2200447; computational_description=DNA glycosylase superfamily protein%3B FUNCTIONS IN: DNA-3-methyladenine glycosylase I activity%2C catalytic activity%3B INVOLVED IN: DNA repair%2C base-excision repair%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257)%2C Methyladenine glycosylase (InterPro:IPR005019)%3B BEST Arabidopsis thaliana protein match is: DNA glycosylase superfamily protein (TAIR:AT1G80850.1)%3B Has 3684 Blast hits to 3684 proteins in 1581 species: Archae - 10%3B Bacteria - 3170%3B Metazoa - 10%3B Fungi - 2%3B Plants - 164%3B Viruses - 0%3B Other Eukaryotes - 328 (source: NCBI BLink).; locus_type=protein_coding
AT1G15980.1	chr1:005489314	0.0	W/5489314-5489738,5489837-5489987,5490075-5490265,5490338-5490595,5490675-5490780,5490867-5490952,5491031-5491199	AT1G15980.1 CDS AT1G15980 ID=AT1G15980.1; Parent=AT1G15980; Name=AT1G15980.1; Note=NDH-dependent cyclic electron flow 1; curator_summary=encodes a novel subunit of the chloroplast NAD(P)H dehydrogenase complex%2C involved in cyclic electron flow around photosystem I to produce ATP.; conf_class=2; symbol=PnsB1; Alias=NDF1, NDH-dependent cyclic electron flow 1, NDH48, NAD(P)H DEHYDROGENASE SUBUNIT 48; full_name=Photosynthetic NDH subcomplex B 1; computational_description=NDH-dependent cyclic electron flow 1 (NDF1)%3B INVOLVED IN: photosynthetic electron transport in photosystem I%3B LOCATED IN: chloroplast thylakoid membrane%2C chloroplast%2C NAD(P)H dehydrogenase complex (plastoquinone)%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B Has 119 Blast hits to 119 proteins in 57 species: Archae - 0%3B Bacteria - 90%3B Metazoa - 0%3B Fungi - 0%3B Plants - 29%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:18650403, PMID:18785996, PMID:18974055, PMID:21785130, locus:2200452; locus_type=protein_coding
AT1G15990.1	chr1:005491304	0.0	C/5491304-5492023,5492093-5492441,5492527-5492840,5492939-5493151,5493239-5493812,5493890-5493936	AT1G15990.1 CDS AT1G15990 ID=AT1G15990.1; Parent=AT1G15990; Name=AT1G15990.1; Note=cyclic nucleotide gated channel 7; curator_summary=Encodes a plasma membrane localized member of the cyclic nucleotide gated channel (CNGC) family that is essential for male reproductive fertility.; conf_class=5; symbol=CNGC7; Alias=ATCNGC7, cyclic nucleotide gated channel 7; full_name=cyclic nucleotide gated channel 7; computational_description=cyclic nucleotide gated channel 7 (CNGC7)%3B FUNCTIONS IN: ion channel activity%2C cyclic nucleotide binding%2C calmodulin binding%3B INVOLVED IN: response to cadmium ion%3B LOCATED IN: membrane%3B EXPRESSED IN: male gametophyte%2C flower%2C cultured cell%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%3B CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595)%2C Ion transport (InterPro:IPR005821)%2C Cyclic nucleotide-binding-like (InterPro:IPR018490)%2C Potassium channel%2C voltage-dependent%2C EAG/ELK/ERG (InterPro:IPR003938)%2C RmlC-like jelly roll fold (InterPro:IPR014710)%3B BEST Arabidopsis thaliana protein match is: cyclic nucleotide gated channel 8 (TAIR:AT1G19780.1)%3B Has 3586 Blast hits to 3408 proteins in 277 species: Archae - 0%3B Bacteria - 66%3B Metazoa - 1555%3B Fungi - 86%3B Plants - 1001%3B Viruses - 0%3B Other Eukaryotes - 878 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:11782485, PMID:12218065, PMID:12818663, PMID:16502469, PMID:16607029, PMID:18775970, PMID:22645532, PMID:23424627, locus:2200502; locus_type=protein_coding
AT1G16000.1	chr1:005494576	0.0	W/5494576-5494744,5495058-5495149	AT1G16000.1 CDS AT1G16000 ID=AT1G16000.1; Parent=AT1G16000; Name=AT1G16000.1; Note=GAG1At protein; conf_class=1; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80890.1)%3B Has 41 Blast hits to 40 proteins in 10 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 41%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:18650403, locus:2200512; locus_type=protein_coding
AT1G16010.1	chr1:005495462	0.0	C/5495462-5495692,5495785-5495832,5495920-5496378,5496492-5497082	AT1G16010.1 CDS AT1G16010 ID=AT1G16010.1; Parent=AT1G16010; Name=AT1G16010.1; Note=magnesium transporter 2; curator_summary=Transmembrane magnesium transporter. One of nine family members.; conf_class=1; symbol=MGT2; Alias=AtMGT2, AtMRS2-1, MRS2-1; full_name=magnesium transporter 2; computational_description=magnesium transporter 2 (MGT2)%3B FUNCTIONS IN: magnesium ion transmembrane transporter activity%2C metal ion transmembrane transporter activity%3B INVOLVED IN: metal ion transport%2C transmembrane transport%3B LOCATED IN: vacuole%2C membrane%3B EXPRESSED IN: 32 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Mg2+ transporter protein%2C CorA-like (InterPro:IPR002523)%3B BEST Arabidopsis thaliana protein match is: magnesium transporter 1 (TAIR:AT1G80900.1)%3B Has 790 Blast hits to 772 proteins in 170 species: Archae - 2%3B Bacteria - 29%3B Metazoa - 62%3B Fungi - 196%3B Plants - 407%3B Viruses - 0%3B Other Eukaryotes - 94 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16581873, PMID:18650403, PMID:18775970, PMID:19966073, PMID:21261624, PMID:22067997, PMID:23628997, PMID:23732234, locus:2200542; locus_type=protein_coding
AT1G16010.2	chr1:005495462	0.0	C/5495462-5495692,5495785-5495832,5495920-5496378,5496492-5497082	AT1G16010.2 CDS AT1G16010 ID=AT1G16010.2; Parent=AT1G16010; Name=AT1G16010.2; Note=magnesium transporter 2; curator_summary=Transmembrane magnesium transporter. One of nine family members.; conf_class=2; symbol=MGT2; Alias=AtMGT2, AtMRS2-1, MRS2-1; full_name=magnesium transporter 2; computational_description=magnesium transporter 2 (MGT2)%3B FUNCTIONS IN: magnesium ion transmembrane transporter activity%2C metal ion transmembrane transporter activity%3B INVOLVED IN: metal ion transport%2C transmembrane transport%3B LOCATED IN: vacuole%2C membrane%3B EXPRESSED IN: 32 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Mg2+ transporter protein%2C CorA-like (InterPro:IPR002523)%3B BEST Arabidopsis thaliana protein match is: magnesium transporter 1 (TAIR:AT1G80900.1)%3B Has 790 Blast hits to 772 proteins in 170 species: Archae - 2%3B Bacteria - 29%3B Metazoa - 62%3B Fungi - 196%3B Plants - 407%3B Viruses - 0%3B Other Eukaryotes - 94 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16581873, PMID:18650403, PMID:18775970, PMID:19966073, PMID:21261624, PMID:22067997, PMID:23628997, PMID:23732234, locus:2200542; locus_type=protein_coding
AT1G16010.3	chr1:005495462	0.0	C/5495462-5495692,5495785-5495832,5495920-5496378,5496492-5497082	AT1G16010.3 CDS AT1G16010 ID=AT1G16010.3; Parent=AT1G16010; Name=AT1G16010.3; Note=magnesium transporter 2; curator_summary=Transmembrane magnesium transporter. One of nine family members.; conf_class=4; symbol=MGT2; Alias=AtMGT2, AtMRS2-1, MRS2-1; full_name=magnesium transporter 2; computational_description=magnesium transporter 2 (MGT2)%3B FUNCTIONS IN: magnesium ion transmembrane transporter activity%2C metal ion transmembrane transporter activity%3B INVOLVED IN: metal ion transport%2C transmembrane transport%3B LOCATED IN: vacuole%2C membrane%3B EXPRESSED IN: 32 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Mg2+ transporter protein%2C CorA-like (InterPro:IPR002523)%3B BEST Arabidopsis thaliana protein match is: magnesium transporter 1 (TAIR:AT1G80900.1)%3B Has 790 Blast hits to 772 proteins in 170 species: Archae - 2%3B Bacteria - 29%3B Metazoa - 62%3B Fungi - 196%3B Plants - 407%3B Viruses - 0%3B Other Eukaryotes - 94 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:16581873, PMID:18650403, PMID:18775970, PMID:19966073, PMID:21261624, PMID:22067997, PMID:23628997, PMID:23732234, locus:2200542; locus_type=protein_coding
AT1G16020.1	chr1:005498633	0.0	W/5498633-5498808,5498986-5499079,5499192-5499375,5499475-5499513,5499641-5499750,5499828-5500367,5500449-5500604,5500685-5500902,5500988-5501018	AT1G16020.1 CDS AT1G16020 ID=AT1G16020.1; Parent=AT1G16020; Name=AT1G16020.1; Note=vacuolar fusion protein (DUF1712); conf_class=2; Alias=CCZ1a, CALCIUM CAFFEINE ZINC SENSITIVITY 1a; computational_description=Protein of unknown function (DUF1712)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1712%2C fungi (InterPro:IPR013176)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1712) (TAIR:AT1G80910.1)%3B Has 187 Blast hits to 185 proteins in 74 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 125%3B Fungi - 3%3B Plants - 43%3B Viruses - 0%3B Other Eukaryotes - 16 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:24824487, locus:2200547; locus_type=protein_coding
AT1G16020.2	chr1:005498633	0.0	W/5498633-5498808,5498986-5499079,5499192-5499375,5499641-5499750,5499828-5500367,5500449-5500604,5500685-5500902,5500988-5501018	AT1G16020.2 CDS AT1G16020 ID=AT1G16020.2; Parent=AT1G16020; Name=AT1G16020.2; Note=vacuolar fusion protein (DUF1712); conf_class=2; Alias=CCZ1a, CALCIUM CAFFEINE ZINC SENSITIVITY 1a; computational_description=Protein of unknown function (DUF1712)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1712%2C fungi (InterPro:IPR013176)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1712) (TAIR:AT1G80910.1)%3B Has 187 Blast hits to 185 proteins in 74 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 125%3B Fungi - 3%3B Plants - 43%3B Viruses - 0%3B Other Eukaryotes - 16 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:24824487, locus:2200547; locus_type=protein_coding
AT1G16020.3	chr1:005499589	0.0	W/5499589-5499750,5499828-5500367,5500449-5500604,5500685-5500902,5500988-5501018	AT1G16020.3 CDS AT1G16020 ID=AT1G16020.3; Parent=AT1G16020; Name=AT1G16020.3; Note=vacuolar fusion protein (DUF1712); Alias=CCZ1a, CALCIUM CAFFEINE ZINC SENSITIVITY 1a; computational_description=Protein of unknown function (DUF1712)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1712%2C fungi (InterPro:IPR013176)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1712) (TAIR:AT1G80910.1)%3B Has 187 Blast hits to 185 proteins in 74 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 125%3B Fungi - 3%3B Plants - 43%3B Viruses - 0%3B Other Eukaryotes - 16 (source: NCBI BLink).; Dbxref=PMID:24824487, locus:2200547; locus_type=protein_coding
AT1G16020.4	chr1:005499712	0.0	W/5499712-5499750,5499828-5500367,5500449-5500604,5500685-5500902,5500988-5501018	AT1G16020.4 CDS AT1G16020 ID=AT1G16020.4; Parent=AT1G16020; Name=AT1G16020.4; Note=vacuolar fusion protein (DUF1712); Alias=CCZ1a, CALCIUM CAFFEINE ZINC SENSITIVITY 1a; computational_description=Protein of unknown function (DUF1712)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1712%2C fungi (InterPro:IPR013176)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1712) (TAIR:AT1G80910.1)%3B Has 187 Blast hits to 185 proteins in 74 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 125%3B Fungi - 3%3B Plants - 43%3B Viruses - 0%3B Other Eukaryotes - 16 (source: NCBI BLink).; Dbxref=PMID:24824487, locus:2200547; locus_type=protein_coding
AT1G16022.1	chr1:005501396	0.0	C/5501396-5501646,5501736-5501856	AT1G16022.1 CDS AT1G16022 ID=AT1G16022.1; Parent=AT1G16022; Name=AT1G16022.1; Note=transmembrane protein; conf_class=3; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:4515102537; locus_type=protein_coding
AT1G16025.1	chr1:005501505	0.0	W/5501505-5501648,5501762-5501959	AT1G16025.1 CDS AT1G16025 ID=AT1G16025.1; Parent=AT1G16025; Name=AT1G16025.1; Note=hypothetical protein; conf_class=1; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B Has 2 Blast hits to 2 proteins in 1 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 2%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:504956156; locus_type=protein_coding
AT1G16030.1	chr1:005502386	0.0	C/5502386-5504326	AT1G16030.1 CDS AT1G16030 ID=AT1G16030.1; Parent=AT1G16030; Name=AT1G16030.1; Note=heat shock protein 70B; conf_class=1; symbol=Hsp70b; full_name=heat shock protein 70B; computational_description=heat shock protein 70B (Hsp70b)%3B FUNCTIONS IN: ATP binding%3B INVOLVED IN: protein folding%2C response to heat%3B LOCATED IN: cytosol%2C cell wall%2C plasma membrane%2C chloroplast%2C membrane%3B EXPRESSED IN: 19 plant structures%3B EXPRESSED DURING: 10 growth stages%3B CONTAINS InterPro DOMAIN/s: Heat shock protein 70%2C conserved site (InterPro:IPR018181)%2C Heat shock protein Hsp70 (InterPro:IPR001023)%2C Heat shock protein 70 (InterPro:IPR013126)%3B BEST Arabidopsis thaliana protein match is: heat shock protein 70 (TAIR:AT3G12580.1)%3B Has 33913 Blast hits to 33562 proteins in 4835 species: Archae - 164%3B Bacteria - 16454%3B Metazoa - 3784%3B Fungi - 1785%3B Plants - 1262%3B Viruses - 309%3B Other Eukaryotes - 10155 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11782485, PMID:11402207, PMID:14973164, PMID:15908592, PMID:16081496, PMID:16258017, PMID:16679420, PMID:17059409, PMID:17028149, PMID:17085506, PMID:18065690, PMID:18189342, PMID:18633119, PMID:18783601, PMID:18775970, PMID:18831797, PMID:20113313, PMID:21835493, locus:2200462; locus_type=protein_coding
AT1G16040.1	chr1:005504747	0.0	W/5504747-5504929,5505015-5505080,5505312-5505354,5505569-5505623,5505821-5505869,5505979-5506046,5506125-5506233,5506349-5506456	AT1G16040.1 CDS AT1G16040 ID=AT1G16040.1; Parent=AT1G16040; Name=AT1G16040.1; Note=phosphatidylinositol-glycan biosynthesis class F-like protein; conf_class=2; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: GPI anchor biosynthetic process%3B LOCATED IN: integral to membrane%2C endoplasmic reticulum membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: GPI biosynthesis protein Pig-F (InterPro:IPR009580)%3B Has 280 Blast hits to 280 proteins in 133 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 113%3B Fungi - 111%3B Plants - 44%3B Viruses - 0%3B Other Eukaryotes - 12 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, locus:2200467; locus_type=protein_coding
AT1G16040.3	chr1:005504747	0.0	W/5504747-5504929,5505015-5505080,5505312-5505354,5505569-5505623,5505821-5505869,5505979-5506046,5506125-5506233,5506349-5506405,5506519-5506536	AT1G16040.3 CDS AT1G16040 ID=AT1G16040.3; Parent=AT1G16040; Name=AT1G16040.3; Note=phosphatidylinositol-glycan biosynthesis class F-like protein; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: GPI anchor biosynthetic process%3B LOCATED IN: integral to membrane%2C endoplasmic reticulum membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: GPI biosynthesis protein Pig-F (InterPro:IPR009580)%3B Has 280 Blast hits to 280 proteins in 133 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 113%3B Fungi - 111%3B Plants - 44%3B Viruses - 0%3B Other Eukaryotes - 12 (source: NCBI BLink).; Dbxref=PMID:18775970, locus:2200467; locus_type=protein_coding
AT1G16040.4	chr1:005504747	0.0	W/5504747-5504929,5505015-5505080,5505312-5505354,5505989-5506046,5506125-5506233,5506349-5506456	AT1G16040.4 CDS AT1G16040 ID=AT1G16040.4; Parent=AT1G16040; Name=AT1G16040.4; Note=phosphatidylinositol-glycan biosynthesis class F-like protein; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: GPI anchor biosynthetic process%3B LOCATED IN: integral to membrane%2C endoplasmic reticulum membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: GPI biosynthesis protein Pig-F (InterPro:IPR009580)%3B Has 280 Blast hits to 280 proteins in 133 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 113%3B Fungi - 111%3B Plants - 44%3B Viruses - 0%3B Other Eukaryotes - 12 (source: NCBI BLink).; Dbxref=PMID:18775970, locus:2200467; locus_type=protein_coding
AT1G16040.2	chr1:005505074	0.0	W/5505074-5505080,5505569-5505623,5505821-5505869,5505979-5506046,5506125-5506233,5506349-5506456	AT1G16040.2 CDS AT1G16040 ID=AT1G16040.2; Parent=AT1G16040; Name=AT1G16040.2; Note=phosphatidylinositol-glycan biosynthesis class F-like protein; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: GPI anchor biosynthetic process%3B LOCATED IN: integral to membrane%2C endoplasmic reticulum membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: GPI biosynthesis protein Pig-F (InterPro:IPR009580)%3B Has 280 Blast hits to 280 proteins in 133 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 113%3B Fungi - 111%3B Plants - 44%3B Viruses - 0%3B Other Eukaryotes - 12 (source: NCBI BLink).; Dbxref=PMID:18775970, locus:2200467; locus_type=protein_coding
AT1G16060.1	chr1:005508563	0.0	W/5508563-5508753,5508834-5508916,5509147-5509155,5509594-5509682,5509908-5509981,5510095-5510145,5510247-5510323,5511146-5511609	AT1G16060.1 CDS AT1G16060 ID=AT1G16060.1; Parent=AT1G16060; Name=AT1G16060.1; Note=ARIA-interacting double AP2 domain protein; curator_summary=Encodes ADAP%2C an AP2-domain protein that interacts with ARIA. ADAP is a positive regulator of the ABA response and is also involved in regulating seedling growth.; conf_class=3; symbol=ADAP; Alias=WRI3, WRINKLED 3; full_name=ARIA-interacting double AP2 domain protein; computational_description=ARIA-interacting double AP2 domain protein (ADAP)%3B CONTAINS InterPro DOMAIN/s: DNA-binding%2C integrase-type (InterPro:IPR016177)%2C Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (InterPro:IPR001471)%3B BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G79700.2)%3B Has 6422 Blast hits to 4728 proteins in 256 species: Archae - 0%3B Bacteria - 37%3B Metazoa - 0%3B Fungi - 0%3B Plants - 6319%3B Viruses - 2%3B Other Eukaryotes - 64 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10948255, PMID:9636071, PMID:9192694, PMID:8742707, PMID:8742706, PMID:11118137, PMID:14623097, PMID:14605227, PMID:16151182, PMID:16920880, PMID:15988559, PMID:19390821, PMID:20736450, PMID:23243127, locus:2200477; locus_type=protein_coding
AT1G16060.3	chr1:005509083	0.0	W/5509083-5509155,5509594-5509682,5509908-5509981,5510095-5510145,5510247-5510323,5511146-5511609	AT1G16060.3 CDS AT1G16060 ID=AT1G16060.3; Parent=AT1G16060; Name=AT1G16060.3; Note=ARIA-interacting double AP2 domain protein; symbol=ADAP; Alias=WRI3, WRINKLED 3; full_name=ARIA-interacting double AP2 domain protein; Dbxref=PMID:10948255, PMID:9636071, PMID:9192694, PMID:8742707, PMID:8742706, PMID:11118137, PMID:14623097, PMID:14605227, PMID:16151182, PMID:16920880, PMID:15988559, PMID:19390821, PMID:20736450, PMID:23243127, locus:2200477; curator_summary=Encodes ADAP%2C an AP2-domain protein that interacts with ARIA. ADAP is a positive regulator of the ABA response and is also involved in regulating seedling growth.; computational_description=ARIA-interacting double AP2 domain protein (ADAP)%3B CONTAINS InterPro DOMAIN/s: DNA-binding%2C integrase-type (InterPro:IPR016177)%2C Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (InterPro:IPR001471)%3B BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G79700.2)%3B Has 6422 Blast hits to 4728 proteins in 256 species: Archae - 0%3B Bacteria - 37%3B Metazoa - 0%3B Fungi - 0%3B Plants - 6319%3B Viruses - 2%3B Other Eukaryotes - 64 (source: NCBI BLink).; locus_type=protein_coding
AT1G16060.2	chr1:005509938	0.0	W/5509938-5509981,5510095-5510145,5510247-5510323,5511146-5511609	AT1G16060.2 CDS AT1G16060 ID=AT1G16060.2; Parent=AT1G16060; Name=AT1G16060.2; Note=ARIA-interacting double AP2 domain protein; curator_summary=Encodes ADAP%2C an AP2-domain protein that interacts with ARIA. ADAP is a positive regulator of the ABA response and is also involved in regulating seedling growth.; conf_class=2; symbol=ADAP; Alias=WRI3, WRINKLED 3; full_name=ARIA-interacting double AP2 domain protein; computational_description=ARIA-interacting double AP2 domain protein (ADAP)%3B CONTAINS InterPro DOMAIN/s: DNA-binding%2C integrase-type (InterPro:IPR016177)%2C Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (InterPro:IPR001471)%3B BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G79700.2)%3B Has 6422 Blast hits to 4728 proteins in 256 species: Archae - 0%3B Bacteria - 37%3B Metazoa - 0%3B Fungi - 0%3B Plants - 6319%3B Viruses - 2%3B Other Eukaryotes - 64 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10948255, PMID:9636071, PMID:9192694, PMID:8742707, PMID:8742706, PMID:11118137, PMID:14623097, PMID:14605227, PMID:16151182, PMID:16920880, PMID:15988559, PMID:19390821, PMID:20736450, PMID:23243127, locus:2200477; locus_type=protein_coding
AT1G16060.4	chr1:005509938	0.0	W/5509938-5509981,5510095-5510145,5510247-5510323,5511146-5511609	AT1G16060.4 CDS AT1G16060 ID=AT1G16060.4; Parent=AT1G16060; Name=AT1G16060.4; Note=ARIA-interacting double AP2 domain protein; symbol=ADAP; Alias=WRI3, WRINKLED 3; full_name=ARIA-interacting double AP2 domain protein; curator_summary=Encodes ADAP%2C an AP2-domain protein that interacts with ARIA. ADAP is a positive regulator of the ABA response and is also involved in regulating seedling growth.; computational_description=ARIA-interacting double AP2 domain protein (ADAP)%3B CONTAINS InterPro DOMAIN/s: DNA-binding%2C integrase-type (InterPro:IPR016177)%2C Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (InterPro:IPR001471)%3B BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G79700.2)%3B Has 6422 Blast hits to 4728 proteins in 256 species: Archae - 0%3B Bacteria - 37%3B Metazoa - 0%3B Fungi - 0%3B Plants - 6319%3B Viruses - 2%3B Other Eukaryotes - 64 (source: NCBI BLink).; Dbxref=PMID:10948255, PMID:9636071, PMID:9192694, PMID:8742707, PMID:8742706, PMID:11118137, PMID:14623097, PMID:14605227, PMID:16151182, PMID:16920880, PMID:15988559, PMID:19390821, PMID:20736450, PMID:23243127, locus:2200477; locus_type=protein_coding
AT1G16060.5	chr1:005509938	0.0	W/5509938-5509981,5510095-5510145,5510247-5510323,5511146-5511609	AT1G16060.5 CDS AT1G16060 ID=AT1G16060.5; Parent=AT1G16060; Name=AT1G16060.5; Note=ARIA-interacting double AP2 domain protein; symbol=ADAP; Alias=WRI3, WRINKLED 3; full_name=ARIA-interacting double AP2 domain protein; curator_summary=Encodes ADAP%2C an AP2-domain protein that interacts with ARIA. ADAP is a positive regulator of the ABA response and is also involved in regulating seedling growth.; computational_description=ARIA-interacting double AP2 domain protein (ADAP)%3B CONTAINS InterPro DOMAIN/s: DNA-binding%2C integrase-type (InterPro:IPR016177)%2C Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (InterPro:IPR001471)%3B BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G79700.2)%3B Has 6422 Blast hits to 4728 proteins in 256 species: Archae - 0%3B Bacteria - 37%3B Metazoa - 0%3B Fungi - 0%3B Plants - 6319%3B Viruses - 2%3B Other Eukaryotes - 64 (source: NCBI BLink).; Dbxref=PMID:10948255, PMID:9636071, PMID:9192694, PMID:8742707, PMID:8742706, PMID:11118137, PMID:14623097, PMID:14605227, PMID:16151182, PMID:16920880, PMID:15988559, PMID:19390821, PMID:20736450, PMID:23243127, locus:2200477; locus_type=protein_coding
AT1G16060.6	chr1:005509938	0.0	W/5509938-5509981,5510095-5510145,5510247-5510323,5511146-5511609	AT1G16060.6 CDS AT1G16060 ID=AT1G16060.6; Parent=AT1G16060; Name=AT1G16060.6; Note=ARIA-interacting double AP2 domain protein; symbol=ADAP; Alias=WRI3, WRINKLED 3; full_name=ARIA-interacting double AP2 domain protein; curator_summary=Encodes ADAP%2C an AP2-domain protein that interacts with ARIA. ADAP is a positive regulator of the ABA response and is also involved in regulating seedling growth.; computational_description=ARIA-interacting double AP2 domain protein (ADAP)%3B CONTAINS InterPro DOMAIN/s: DNA-binding%2C integrase-type (InterPro:IPR016177)%2C Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (InterPro:IPR001471)%3B BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G79700.2)%3B Has 6422 Blast hits to 4728 proteins in 256 species: Archae - 0%3B Bacteria - 37%3B Metazoa - 0%3B Fungi - 0%3B Plants - 6319%3B Viruses - 2%3B Other Eukaryotes - 64 (source: NCBI BLink).; Dbxref=PMID:10948255, PMID:9636071, PMID:9192694, PMID:8742707, PMID:8742706, PMID:11118137, PMID:14623097, PMID:14605227, PMID:16151182, PMID:16920880, PMID:15988559, PMID:19390821, PMID:20736450, PMID:23243127, locus:2200477; locus_type=protein_coding
AT1G16060.7	chr1:005510218	0.0	W/5510218-5510323,5511146-5511609	AT1G16060.7 CDS AT1G16060 ID=AT1G16060.7; Parent=AT1G16060; Name=AT1G16060.7; Note=ARIA-interacting double AP2 domain protein; symbol=ADAP; Alias=WRI3, WRINKLED 3; full_name=ARIA-interacting double AP2 domain protein; curator_summary=Encodes ADAP%2C an AP2-domain protein that interacts with ARIA. ADAP is a positive regulator of the ABA response and is also involved in regulating seedling growth.; computational_description=ARIA-interacting double AP2 domain protein (ADAP)%3B CONTAINS InterPro DOMAIN/s: DNA-binding%2C integrase-type (InterPro:IPR016177)%2C Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (InterPro:IPR001471)%3B BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G79700.2)%3B Has 6422 Blast hits to 4728 proteins in 256 species: Archae - 0%3B Bacteria - 37%3B Metazoa - 0%3B Fungi - 0%3B Plants - 6319%3B Viruses - 2%3B Other Eukaryotes - 64 (source: NCBI BLink).; Dbxref=PMID:10948255, PMID:9636071, PMID:9192694, PMID:8742707, PMID:8742706, PMID:11118137, PMID:14623097, PMID:14605227, PMID:16151182, PMID:16920880, PMID:15988559, PMID:19390821, PMID:20736450, PMID:23243127, locus:2200477; locus_type=protein_coding
AT1G16070.1	chr1:005511899	0.0	C/5511899-5511974,5512077-5512144,5512224-5512316,5512387-5512476,5512567-5512663,5512756-5512811,5512904-5513080,5513161-5513275,5513358-5513779	AT1G16070.1 CDS AT1G16070 ID=AT1G16070.1; Parent=AT1G16070; Name=AT1G16070.1; Note=tubby like protein 8; curator_summary=Member of TLP family; conf_class=2; symbol=TLP8; Alias=AtTLP8, tubby like protein 8; full_name=tubby like protein 8; computational_description=tubby like protein 8 (TLP8)%3B CONTAINS InterPro DOMAIN/s: Tubby%2C C-terminal (InterPro:IPR000007)%3B BEST Arabidopsis thaliana protein match is: tubby like protein 1 (TAIR:AT1G76900.2)%3B Has 842 Blast hits to 842 proteins in 106 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 340%3B Fungi - 21%3B Plants - 410%3B Viruses - 0%3B Other Eukaryotes - 71 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:14736918, PMID:15064372, PMID:15937229, PMID:22751378, PMID:25168737, locus:2200497; locus_type=protein_coding
AT1G16070.2	chr1:005512170	0.0	C/5512170-5512316,5512387-5512476,5512567-5512663,5512756-5512811,5512904-5513080,5513161-5513275,5513358-5513779	AT1G16070.2 CDS AT1G16070 ID=AT1G16070.2; Parent=AT1G16070; Name=AT1G16070.2; Note=tubby like protein 8; curator_summary=Member of TLP family; conf_class=2; symbol=TLP8; Alias=AtTLP8, tubby like protein 8; full_name=tubby like protein 8; computational_description=tubby like protein 8 (TLP8)%3B CONTAINS InterPro DOMAIN/s: Tubby%2C C-terminal (InterPro:IPR000007)%3B BEST Arabidopsis thaliana protein match is: tubby like protein 1 (TAIR:AT1G76900.2)%3B Has 842 Blast hits to 842 proteins in 106 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 340%3B Fungi - 21%3B Plants - 410%3B Viruses - 0%3B Other Eukaryotes - 71 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:14736918, PMID:15064372, PMID:15937229, PMID:22751378, PMID:25168737, locus:2200497; locus_type=protein_coding
AT1G16070.3	chr1:005512555	0.0	C/5512555-5512663,5512756-5512811,5512904-5513080,5513161-5513275,5513358-5513779	AT1G16070.3 CDS AT1G16070 ID=AT1G16070.3; Parent=AT1G16070; Name=AT1G16070.3; Note=tubby like protein 8; symbol=TLP8; Alias=AtTLP8, tubby like protein 8; full_name=tubby like protein 8; curator_summary=Member of TLP family; computational_description=tubby like protein 8 (TLP8)%3B CONTAINS InterPro DOMAIN/s: Tubby%2C C-terminal (InterPro:IPR000007)%3B BEST Arabidopsis thaliana protein match is: tubby like protein 1 (TAIR:AT1G76900.2)%3B Has 842 Blast hits to 842 proteins in 106 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 340%3B Fungi - 21%3B Plants - 410%3B Viruses - 0%3B Other Eukaryotes - 71 (source: NCBI BLink).; Dbxref=PMID:11118137, PMID:14736918, PMID:15064372, PMID:15937229, PMID:22751378, PMID:25168737, locus:2200497; locus_type=protein_coding
AT1G16080.1	chr1:005514394	0.0	W/5514394-5514742,5514909-5515126,5515216-5515344,5515419-5515550,5515648-5515761	AT1G16080.1 CDS AT1G16080 ID=AT1G16080.1; Parent=AT1G16080; Name=AT1G16080.1; Note=nuclear protein; conf_class=2; computational_description=unknown protein%3B LOCATED IN: apoplast%2C chloroplast stroma%2C chloroplast%2C chloroplast envelope%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 14 growth stages%3B Has 81 Blast hits to 81 proteins in 28 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 0%3B Fungi - 0%3B Plants - 62%3B Viruses - 0%3B Other Eukaryotes - 17 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:16608866, PMID:18650403, PMID:18633119, locus:2200517; locus_type=protein_coding
AT1G16090.1	chr1:005516259	0.0	W/5516259-5516862,5516908-5517068,5517111-5517182,5517264-5517380	AT1G16090.1 CDS AT1G16090 ID=AT1G16090.1; Parent=AT1G16090; Name=AT1G16090.1; Note=wall associated kinase-like 7; curator_summary=WAK-like kinase; conf_class=6; symbol=WAKL7; full_name=wall associated kinase-like 7; computational_description=wall associated kinase-like 7 (WAKL7)%3B FUNCTIONS IN: protein serine/threonine kinase activity%3B LOCATED IN: endomembrane system%2C integral to membrane%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Wall-associated kinase (InterPro:IPR013695)%3B BEST Arabidopsis thaliana protein match is: Wall-associated kinase family protein (TAIR:AT1G79670.1)%3B Has 767 Blast hits to 757 proteins in 14 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 767%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:14576286, PMID:17194768, locus:2200492; locus_type=protein_coding
AT1G16100.1	chr1:005518062	0.0	C/5518062-5518134	AT1G16100.1 tRNA AT1G16100 ID=AT1G16100.1; Parent=AT1G16100; Note=tRNA-Lys; computational_description=tRNA-Lys (anticodon: CTT); Dbxref=PMID:8980477, PMID:23066098, PMID:8980477, locus:3692614; Name=AT1G16100.1; locus_type=pre_trna
AT1TE17830	chr1:005518083	0.0	C/5518083-5518138	AT1TE17830 transposable_element AT1TE17830 ID=AT1TE17830; Name=AT1TE17830; Alias=ATLINEIII
AT1G16110.1	chr1:005518381	0.0	W/5518381-5519344,5519429-5519545,5519623-5520470	AT1G16110.1 CDS AT1G16110 ID=AT1G16110.1; Parent=AT1G16110; Name=AT1G16110.1; Note=wall associated kinase-like 6; curator_summary=WAK-like kinase; conf_class=2; symbol=WAKL6; full_name=wall associated kinase-like 6; computational_description=wall associated kinase-like 6 (WAKL6)%3B FUNCTIONS IN: kinase activity%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: endomembrane system%2C integral to membrane%3B CONTAINS InterPro DOMAIN/s: Wall-associated kinase (InterPro:IPR013695)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: wall associated kinase-like 1 (TAIR:AT1G16120.1)%3B Has 122937 Blast hits to 120828 proteins in 4420 species: Archae - 135%3B Bacteria - 14043%3B Metazoa - 45685%3B Fungi - 10517%3B Plants - 33921%3B Viruses - 506%3B Other Eukaryotes - 18130 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576286, PMID:20736450, PMID:21477822, locus:2200527; locus_type=protein_coding
AT1G05217.1	chr1:005521653	0.0	C/5521653-5521896	AT1G05217.1 lnc_RNA AT1G05217 ID=AT1G05217.1; Parent=AT1G05217; Name=AT1G05217.1; locus_type=long_noncoding_rna
AT1G16120.1	chr1:005522639	0.0	W/5522639-5523581,5523657-5523785,5523863-5524983	AT1G16120.1 CDS AT1G16120 ID=AT1G16120.1; Parent=AT1G16120; Name=AT1G16120.1; Note=wall associated kinase-like 1; curator_summary=wall-associated kinase like; conf_class=8; symbol=WAKL1; full_name=wall associated kinase-like 1; computational_description=wall associated kinase-like 1 (WAKL1)%3B FUNCTIONS IN: kinase activity%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: endomembrane system%2C integral to membrane%2C cell wall%3B CONTAINS InterPro DOMAIN/s: Wall-associated kinase (InterPro:IPR013695)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: wall associated kinase-like 5 (TAIR:AT1G16160.1)%3B Has 123437 Blast hits to 121647 proteins in 4379 species: Archae - 141%3B Bacteria - 14104%3B Metazoa - 45195%3B Fungi - 10752%3B Plants - 34405%3B Viruses - 501%3B Other Eukaryotes - 18339 (source: NCBI BLink).; conf_rating=*; Dbxref=PMID:14576286, PMID:17586839, PMID:20736450, locus:2200552; locus_type=protein_coding
AT1G16130.1	chr1:005525634	0.0	W/5525634-5526543,5526627-5526749,5526834-5528047	AT1G16130.1 CDS AT1G16130 ID=AT1G16130.1; Parent=AT1G16130; Name=AT1G16130.1; Note=wall associated kinase-like 2; curator_summary=wall-associated kinase like; conf_class=1; symbol=WAKL2; full_name=wall associated kinase-like 2; computational_description=wall associated kinase-like 2 (WAKL2)%3B FUNCTIONS IN: kinase activity%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: integral to membrane%3B EXPRESSED IN: stem%2C cotyledon%2C leaf whorl%2C leaf%3B EXPRESSED DURING: LP.06 six leaves visible%2C LP.04 four leaves visible%2C LP.10 ten leaves visible%2C LP.08 eight leaves visible%2C LP.12 twelve leaves visible%3B CONTAINS InterPro DOMAIN/s: Wall-associated kinase (InterPro:IPR013695)%2C EGF-like calcium-binding%2C conserved site (InterPro:IPR018097)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: wall associated kinase-like 4 (TAIR:AT1G16150.1)%3B Has 122559 Blast hits to 120935 proteins in 4599 species: Archae - 125%3B Bacteria - 14250%3B Metazoa - 44921%3B Fungi - 10430%3B Plants - 34238%3B Viruses - 502%3B Other Eukaryotes - 18093 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14576286, PMID:15235117, PMID:20736450, PMID:21477822, locus:2200562; locus_type=protein_coding
AT1G16140.1	chr1:005528873	0.0	W/5528873-5531371	AT1G16140.1 pseudogenic_transcript AT1G16140 ID=AT1G16140.1; Parent=AT1G16140; Name=AT1G16140.1; curator_summary=pseudogene similar to wall-associated kinase protein family; symbol=WAKL3; Note=pseudogene; full_name=wall associated kinase-like 3; Dbxref=PMID:14576286, PMID:14576286, locus:2200432; computational_description=pseudogene of wall associated kinase-like 5; locus_type=pseudogene
AT1TE17870	chr1:005531243	0.0	W/5531243-5531284	AT1TE17870 transposable_element AT1TE17870 ID=AT1TE17870; Name=AT1TE17870; Alias=ATREP1
AT1TE17875	chr1:005531285	0.0	W/5531285-5531953	AT1TE17875 transposable_element AT1TE17875 ID=AT1TE17875; Name=AT1TE17875; Alias=ATREP2A
AT1G16150.1	chr1:005532415	0.0	W/5532415-5533348,5533434-5533556,5533649-5534877	AT1G16150.1 CDS AT1G16150 ID=AT1G16150.1; Parent=AT1G16150; Name=AT1G16150.1; Note=wall associated kinase-like 4; curator_summary=Encodes a cell-wall associated kinase like protein of the receptor-like kinase (RLK) superfamily. Likely involved in Arabidopsis root mineral responses to Zn2+%2C Cu2+%2C K+%2C Na+ and Ni+.; conf_class=6; symbol=WAKL4; full_name=wall associated kinase-like 4; computational_description=wall associated kinase-like 4 (WAKL4)%3B CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Wall-associated kinase (InterPro:IPR013695)%2C EGF-like calcium-binding%2C conserved site (InterPro:IPR018097)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%3B BEST Arabidopsis thaliana protein match is: wall associated kinase-like 2 (TAIR:AT1G16130.1)%3B Has 121654 Blast hits to 119929 proteins in 4418 species: Archae - 143%3B Bacteria - 13875%3B Metazoa - 44623%3B Fungi - 10480%3B Plants - 34034%3B Viruses - 478%3B Other Eukaryotes - 18021 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:14576286, PMID:16286448, PMID:18441213, PMID:20736450, locus:2200442; locus_type=protein_coding
AT1G16160.1	chr1:005535913	0.0	W/5535913-5536864,5536941-5537063,5537149-5538269	AT1G16160.1 CDS AT1G16160 ID=AT1G16160.1; Parent=AT1G16160; Name=AT1G16160.1; Note=wall associated kinase-like 5; curator_summary=WAK-like kinase; conf_class=8; symbol=WAKL5; full_name=wall associated kinase-like 5; computational_description=wall associated kinase-like 5 (WAKL5)%3B FUNCTIONS IN: kinase activity%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: integral to membrane%2C chloroplast%3B EXPRESSED IN: 9 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Wall-associated kinase (InterPro:IPR013695)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C EGF-like calcium-binding%2C conserved site (InterPro:IPR018097)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase-like domain (InterPro:IPR011009)%3B BEST Arabidopsis thaliana protein match is: wall associated kinase-like 1 (TAIR:AT1G16120.1)%3B Has 123134 Blast hits to 120241 proteins in 4306 species: Archae - 131%3B Bacteria - 13824%3B Metazoa - 45906%3B Fungi - 10588%3B Plants - 34048%3B Viruses - 501%3B Other Eukaryotes - 18136 (source: NCBI BLink).; conf_rating=*; Dbxref=PMID:14576286, PMID:14576160, PMID:16510518, PMID:18772308, locus:2200472; locus_type=protein_coding
AT1G16170.1	chr1:005538874	0.0	C/5538874-5539152	AT1G16170.1 CDS AT1G16170 ID=AT1G16170.1; Parent=AT1G16170; Name=AT1G16170.1; Note=ephrin-A3 protein; conf_class=2; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G79660.1)%3B Has 55 Blast hits to 55 proteins in 13 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 55%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, locus:2200482; locus_type=protein_coding
AT1G16180.1	chr1:005540905	0.0	W/5540905-5541088,5541163-5541402,5541484-5541595,5541675-5541849,5541948-5542188,5542384-5542670	AT1G16180.1 CDS AT1G16180 ID=AT1G16180.1; Parent=AT1G16180; Name=AT1G16180.1; Note=Serinc-domain containing serine and sphingolipid biosynthesis protein; conf_class=4; computational_description=Serinc-domain containing serine and sphingolipid biosynthesis protein%3B FUNCTIONS IN: molecular_function unknown%3B LOCATED IN: endomembrane system%2C membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: TMS membrane protein/tumour differentially expressed protein (InterPro:IPR005016)%3B BEST Arabidopsis thaliana protein match is: Serinc-domain containing serine and sphingolipid biosynthesis protein (TAIR:AT3G06170.1)%3B Has 780 Blast hits to 770 proteins in 184 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 445%3B Fungi - 127%3B Plants - 141%3B Viruses - 0%3B Other Eukaryotes - 67 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:18650403, PMID:18775970, locus:2200507; locus_type=protein_coding
AT1G16180.2	chr1:005540905	0.0	W/5540905-5541088,5541163-5541402,5541484-5541595,5541675-5541849,5541948-5542188,5542384-5542670	AT1G16180.2 CDS AT1G16180 ID=AT1G16180.2; Parent=AT1G16180; Name=AT1G16180.2; Note=Serinc-domain containing serine and sphingolipid biosynthesis protein; conf_class=4; computational_description=Serinc-domain containing serine and sphingolipid biosynthesis protein%3B FUNCTIONS IN: molecular_function unknown%3B LOCATED IN: endomembrane system%2C membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: TMS membrane protein/tumour differentially expressed protein (InterPro:IPR005016)%3B BEST Arabidopsis thaliana protein match is: Serinc-domain containing serine and sphingolipid biosynthesis protein (TAIR:AT3G06170.1)%3B Has 780 Blast hits to 770 proteins in 184 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 445%3B Fungi - 127%3B Plants - 141%3B Viruses - 0%3B Other Eukaryotes - 67 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:18650403, PMID:18775970, locus:2200507; locus_type=protein_coding
AT1G16190.1	chr1:005543267	0.0	W/5543267-5543332,5543606-5543767,5544064-5544102,5544192-5544230,5544317-5544390,5544484-5544661,5544739-5544861,5544950-5545015,5545219-5545266,5545344-5545453,5545599-5545683,5545776-5545892	AT1G16190.1 CDS AT1G16190 ID=AT1G16190.1; Parent=AT1G16190; Name=AT1G16190.1; Note=Rad23 UV excision repair protein family; curator_summary=Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A)%2C AT1G79650(RAD23B)%2C AT3G02540(RAD23C)%2C AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle%2C morphology%2C and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome.; conf_class=2; symbol=RAD23A; full_name=RADIATION SENSITIVE23A; computational_description=RADIATION SENSITIVE23A (RAD23A)%3B FUNCTIONS IN: damaged DNA binding%2C ubiquitin binding%2C proteasome binding%3B INVOLVED IN: proteasomal ubiquitin-dependent protein catabolic process%2C base-excision repair%2C nucleotide-excision repair%3B LOCATED IN: nucleus%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636)%2C Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal (InterPro:IPR000449)%2C Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal%2C eukaryote (InterPro:IPR015940)%2C UV excision repair protein Rad23 (InterPro:IPR004806)%2C Ubiquitin (InterPro:IPR000626)%2C XPC-binding domain (InterPro:IPR015360)%2C Ubiquitin supergroup (InterPro:IPR019955)%2C UBA-like (InterPro:IPR009060)%3B BEST Arabidopsis thaliana protein match is: Rad23 UV excision repair protein family (TAIR:AT1G79650.2)%3B Has 9140 Blast hits to 4719 proteins in 640 species: Archae - 2%3B Bacteria - 43%3B Metazoa - 4062%3B Fungi - 1252%3B Plants - 2281%3B Viruses - 138%3B Other Eukaryotes - 1362 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15155891, PMID:15645454, PMID:15546358, PMID:20086187, PMID:22631228, locus:2200522; locus_type=protein_coding
AT1G16190.2	chr1:005543609	0.0	W/5543609-5543767,5544064-5544102,5544192-5544230,5544317-5544390,5544484-5544661,5544739-5544861,5544950-5545015,5545219-5545266,5545344-5545453,5545599-5545683,5545776-5545892	AT1G16190.2 CDS AT1G16190 ID=AT1G16190.2; Parent=AT1G16190; Name=AT1G16190.2; Note=Rad23 UV excision repair protein family; symbol=RAD23A; full_name=RADIATION SENSITIVE23A; curator_summary=Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A)%2C AT1G79650(RAD23B)%2C AT3G02540(RAD23C)%2C AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle%2C morphology%2C and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome.; computational_description=RADIATION SENSITIVE23A (RAD23A)%3B FUNCTIONS IN: damaged DNA binding%2C ubiquitin binding%2C proteasome binding%3B INVOLVED IN: proteasomal ubiquitin-dependent protein catabolic process%2C base-excision repair%2C nucleotide-excision repair%3B LOCATED IN: nucleus%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636)%2C Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal (InterPro:IPR000449)%2C Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal%2C eukaryote (InterPro:IPR015940)%2C UV excision repair protein Rad23 (InterPro:IPR004806)%2C Ubiquitin (InterPro:IPR000626)%2C XPC-binding domain (InterPro:IPR015360)%2C Ubiquitin supergroup (InterPro:IPR019955)%2C UBA-like (InterPro:IPR009060)%3B BEST Arabidopsis thaliana protein match is: Rad23 UV excision repair protein family (TAIR:AT1G79650.2)%3B Has 9140 Blast hits to 4719 proteins in 640 species: Archae - 2%3B Bacteria - 43%3B Metazoa - 4062%3B Fungi - 1252%3B Plants - 2281%3B Viruses - 138%3B Other Eukaryotes - 1362 (source: NCBI BLink).; Dbxref=PMID:15155891, PMID:15645454, PMID:15546358, PMID:20086187, PMID:22631228, locus:2200522; locus_type=protein_coding
AT1G16210.1	chr1:005546352	0.0	C/5546352-5546378,5546497-5546616,5546890-5547447	AT1G16210.1 CDS AT1G16210 ID=AT1G16210.1; Parent=AT1G16210; Name=AT1G16210.1; Note=coiled-coil protein; conf_class=1; computational_description=unknown protein%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1014 (InterPro:IPR010422)%3B Has 16107 Blast hits to 8386 proteins in 1107 species: Archae - 26%3B Bacteria - 3370%3B Metazoa - 4013%3B Fungi - 1516%3B Plants - 526%3B Viruses - 120%3B Other Eukaryotes - 6536 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:18650403, PMID:18775970, locus:2032845; locus_type=protein_coding
AT1G16220.1	chr1:005548653	0.0	W/5548653-5548907,5549098-5549466,5549543-5549660,5549746-5549969,5550044-5550553	AT1G16220.1 CDS AT1G16220 ID=AT1G16220.1; Parent=AT1G16220; Name=AT1G16220.1; Note=Protein phosphatase 2C family protein; conf_class=2; computational_description=Protein phosphatase 2C family protein%3B FUNCTIONS IN: protein serine/threonine phosphatase activity%2C catalytic activity%3B INVOLVED IN: N-terminal protein myristoylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 10 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932)%2C Protein phosphatase 2C (InterPro:IPR015655)%2C Protein phosphatase 2C%2C N-terminal (InterPro:IPR014045)%3B BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT1G79630.1)%3B Has 5547 Blast hits to 5545 proteins in 292 species: Archae - 2%3B Bacteria - 12%3B Metazoa - 1332%3B Fungi - 643%3B Plants - 2421%3B Viruses - 5%3B Other Eukaryotes - 1132 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12912986, PMID:15130549, PMID:15937229, PMID:19021904, locus:2032880; locus_type=protein_coding
AT1G16225.1	chr1:005551041	0.0	C/5551041-5551157,5551261-5551305,5551400-5551500,5551591-5551784,5551886-5552028	AT1G16225.1 CDS AT1G16225 ID=AT1G16225.1; Parent=AT1G16225; Name=AT1G16225.1; Note=Target SNARE coiled-coil domain protein; conf_class=1; computational_description=Target SNARE coiled-coil domain protein%3B CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727)%3B BEST Arabidopsis thaliana protein match is: Target SNARE coiled-coil domain protein (TAIR:AT1G16230.1)%3B Has 135 Blast hits to 135 proteins in 50 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 37%3B Plants - 88%3B Viruses - 0%3B Other Eukaryotes - 10 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:504956222; locus_type=protein_coding
AT1G16225.2	chr1:005551041	0.0	C/5551041-5551157,5551261-5551305,5551400-5551500,5551591-5551784,5551886-5552100	AT1G16225.2 CDS AT1G16225 ID=AT1G16225.2; Parent=AT1G16225; Name=AT1G16225.2; Note=Target SNARE coiled-coil domain protein; computational_description=Target SNARE coiled-coil domain protein%3B CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727)%3B BEST Arabidopsis thaliana protein match is: Target SNARE coiled-coil domain protein (TAIR:AT1G16230.1)%3B Has 135 Blast hits to 135 proteins in 50 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 37%3B Plants - 88%3B Viruses - 0%3B Other Eukaryotes - 10 (source: NCBI BLink).; Dbxref=locus:504956222; locus_type=protein_coding
AT1G16225.3	chr1:005551577	0.0	C/5551577-5551784,5551886-5552100	AT1G16225.3 CDS AT1G16225 ID=AT1G16225.3; Parent=AT1G16225; Name=AT1G16225.3; Note=Target SNARE coiled-coil domain protein; computational_description=Target SNARE coiled-coil domain protein%3B CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727)%3B BEST Arabidopsis thaliana protein match is: Target SNARE coiled-coil domain protein (TAIR:AT1G16230.1)%3B Has 135 Blast hits to 135 proteins in 50 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 37%3B Plants - 88%3B Viruses - 0%3B Other Eukaryotes - 10 (source: NCBI BLink).; Dbxref=locus:504956222; locus_type=protein_coding
AT1G05223.1	chr1:005552868	0.0	W/5552868-5553111	AT1G05223.1 lnc_RNA AT1G05223 ID=AT1G05223.1; Parent=AT1G05223; Name=AT1G05223.1; locus_type=long_noncoding_rna
AT1G16230.1	chr1:005553467	0.0	C/5553467-5553532,5553618-5553718,5553812-5554011,5554110-5554324	AT1G16230.1 CDS AT1G16230 ID=AT1G16230.1; Parent=AT1G16230; Name=AT1G16230.1; Note=Target SNARE coiled-coil domain protein; conf_class=7; computational_description=Target SNARE coiled-coil domain protein%3B CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727)%3B BEST Arabidopsis thaliana protein match is: syntaxin of plants 51 (TAIR:AT1G16240.2)%3B Has 184 Blast hits to 184 proteins in 71 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 11%3B Fungi - 66%3B Plants - 93%3B Viruses - 0%3B Other Eukaryotes - 10 (source: NCBI BLink).; conf_rating=**; Dbxref=locus:2032815; locus_type=protein_coding
AT1G16240.1	chr1:005555183	0.0	C/5555183-5555314,5555509-5555553,5555633-5555733,5555825-5556030,5556126-5556340	AT1G16240.1 CDS AT1G16240 ID=AT1G16240.1; Parent=AT1G16240; Name=AT1G16240.1; Note=syntaxin of plants 51; curator_summary=Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed.; conf_class=2; symbol=SYP51; Alias=ATSYP51; full_name=syntaxin of plants 51; computational_description=syntaxin of plants 51 (SYP51)%3B FUNCTIONS IN: SNAP receptor activity%3B INVOLVED IN: vesicle-mediated transport%3B LOCATED IN: endosome membrane%2C vacuole%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727)%2C Syntaxin/epimorphin%2C conserved site (InterPro:IPR006012)%3B BEST Arabidopsis thaliana protein match is: syntaxin of plants 52 (TAIR:AT1G79590.2)%3B Has 837 Blast hits to 837 proteins in 196 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 265%3B Fungi - 234%3B Plants - 241%3B Viruses - 0%3B Other Eukaryotes - 93 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11115874, PMID:11739776, PMID:12815100, PMID:15342965, PMID:15539469, PMID:15923337, PMID:16581873, PMID:17662028, PMID:18775970, PMID:18984676, PMID:23087325, locus:2032835; locus_type=protein_coding
AT1G16240.2	chr1:005555183	0.0	C/5555183-5555314,5555509-5555553,5555633-5555733,5555825-5556030,5556126-5556340	AT1G16240.2 CDS AT1G16240 ID=AT1G16240.2; Parent=AT1G16240; Name=AT1G16240.2; Note=syntaxin of plants 51; curator_summary=Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed.; conf_class=2; symbol=SYP51; Alias=ATSYP51; full_name=syntaxin of plants 51; computational_description=syntaxin of plants 51 (SYP51)%3B FUNCTIONS IN: SNAP receptor activity%3B INVOLVED IN: vesicle-mediated transport%3B LOCATED IN: endosome membrane%2C vacuole%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727)%2C Syntaxin/epimorphin%2C conserved site (InterPro:IPR006012)%3B BEST Arabidopsis thaliana protein match is: syntaxin of plants 52 (TAIR:AT1G79590.2)%3B Has 837 Blast hits to 837 proteins in 196 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 265%3B Fungi - 234%3B Plants - 241%3B Viruses - 0%3B Other Eukaryotes - 93 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11115874, PMID:11739776, PMID:12815100, PMID:15342965, PMID:15539469, PMID:15923337, PMID:16581873, PMID:17662028, PMID:18775970, PMID:18984676, PMID:23087325, locus:2032835; locus_type=protein_coding
AT1G16240.4	chr1:005555183	0.0	C/5555183-5555314,5555509-5555553,5555633-5555733,5555825-5556030,5556126-5556340	AT1G16240.4 CDS AT1G16240 ID=AT1G16240.4; Parent=AT1G16240; Name=AT1G16240.4; Note=syntaxin of plants 51; symbol=SYP51; Alias=ATSYP51; full_name=syntaxin of plants 51; Dbxref=PMID:11115874, PMID:11739776, PMID:12815100, PMID:15342965, PMID:15539469, PMID:15923337, PMID:16581873, PMID:17662028, PMID:18775970, PMID:18984676, PMID:23087325, locus:2032835; curator_summary=Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed.; computational_description=syntaxin of plants 51 (SYP51)%3B FUNCTIONS IN: SNAP receptor activity%3B INVOLVED IN: vesicle-mediated transport%3B LOCATED IN: endosome membrane%2C vacuole%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727)%2C Syntaxin/epimorphin%2C conserved site (InterPro:IPR006012)%3B BEST Arabidopsis thaliana protein match is: syntaxin of plants 52 (TAIR:AT1G79590.2)%3B Has 837 Blast hits to 837 proteins in 196 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 265%3B Fungi - 234%3B Plants - 241%3B Viruses - 0%3B Other Eukaryotes - 93 (source: NCBI BLink).; locus_type=protein_coding
AT1G16240.3	chr1:005555193	0.0	C/5555193-5555312,5555509-5555553,5555633-5555733,5555825-5556030,5556126-5556340	AT1G16240.3 CDS AT1G16240 ID=AT1G16240.3; Parent=AT1G16240; Name=AT1G16240.3; Note=syntaxin of plants 51; curator_summary=Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed.; conf_class=2; symbol=SYP51; Alias=ATSYP51; full_name=syntaxin of plants 51; computational_description=syntaxin of plants 51 (SYP51)%3B FUNCTIONS IN: SNAP receptor activity%3B INVOLVED IN: vesicle-mediated transport%3B LOCATED IN: endosome membrane%2C vacuole%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727)%2C Syntaxin/epimorphin%2C conserved site (InterPro:IPR006012)%3B BEST Arabidopsis thaliana protein match is: syntaxin of plants 52 (TAIR:AT1G79590.2)%3B Has 837 Blast hits to 837 proteins in 196 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 265%3B Fungi - 234%3B Plants - 241%3B Viruses - 0%3B Other Eukaryotes - 93 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11115874, PMID:11739776, PMID:12815100, PMID:15342965, PMID:15539469, PMID:15923337, PMID:16581873, PMID:17662028, PMID:18775970, PMID:18984676, PMID:23087325, locus:2032835; locus_type=protein_coding
AT1G16250.1	chr1:005557214	0.0	W/5557214-5557215,5557370-5557945,5558124-5558697	AT1G16250.1 CDS AT1G16250 ID=AT1G16250.1; Parent=AT1G16250; Name=AT1G16250.1; Note=Galactose oxidase/kelch repeat superfamily protein; conf_class=2; computational_description=Galactose oxidase/kelch repeat superfamily protein%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C Galactose oxidase/kelch%2C beta-propeller (InterPro:IPR011043)%2C Kelch repeat type 1 (InterPro:IPR006652)%2C Kelch related (InterPro:IPR013089)%2C Kelch-type beta propeller (InterPro:IPR015915)%3B BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT3G63220.2)%3B Has 9062 Blast hits to 5094 proteins in 277 species: Archae - 4%3B Bacteria - 620%3B Metazoa - 6949%3B Fungi - 23%3B Plants - 1110%3B Viruses - 34%3B Other Eukaryotes - 322 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, locus:2032855; locus_type=protein_coding
AT1G16250.2	chr1:005557214	0.0	W/5557214-5557215,5557370-5557945,5558124-5558697	AT1G16250.2 CDS AT1G16250 ID=AT1G16250.2; Parent=AT1G16250; Name=AT1G16250.2; Note=Galactose oxidase/kelch repeat superfamily protein; Dbxref=PMID:14576160, locus:2032855; computational_description=Galactose oxidase/kelch repeat superfamily protein%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C Galactose oxidase/kelch%2C beta-propeller (InterPro:IPR011043)%2C Kelch repeat type 1 (InterPro:IPR006652)%2C Kelch related (InterPro:IPR013089)%2C Kelch-type beta propeller (InterPro:IPR015915)%3B BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT3G63220.2)%3B Has 9062 Blast hits to 5094 proteins in 277 species: Archae - 4%3B Bacteria - 620%3B Metazoa - 6949%3B Fungi - 23%3B Plants - 1110%3B Viruses - 34%3B Other Eukaryotes - 322 (source: NCBI BLink).; locus_type=protein_coding
AT1G16260.1	chr1:005559708	0.0	C/5559708-5560915,5560984-5561088,5561169-5562018	AT1G16260.1 CDS AT1G16260 ID=AT1G16260.1; Parent=AT1G16260; Name=AT1G16260.1; Note=Wall-associated kinase family protein; conf_class=1; computational_description=Wall-associated kinase family protein%3B FUNCTIONS IN: kinase activity%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: endomembrane system%2C integral to membrane%3B EXPRESSED IN: 19 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Wall-associated kinase (InterPro:IPR013695)%2C EGF-like calcium-binding%2C conserved site (InterPro:IPR018097)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C EGF calcium-binding (InterPro:IPR013091)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: Wall-associated kinase family protein (TAIR:AT1G79670.1)%3B Has 123075 Blast hits to 119967 proteins in 4481 species: Archae - 119%3B Bacteria - 13868%3B Metazoa - 46954%3B Fungi - 10147%3B Plants - 33759%3B Viruses - 489%3B Other Eukaryotes - 17739 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16330762, PMID:16920880, PMID:18055587, PMID:18650403, PMID:22253603, locus:2032875; locus_type=protein_coding
AT1G16260.2	chr1:005559708	0.0	C/5559708-5560915,5560984-5561088,5561169-5562018	AT1G16260.2 CDS AT1G16260 ID=AT1G16260.2; Parent=AT1G16260; Name=AT1G16260.2; Note=Wall-associated kinase family protein; conf_class=3; computational_description=Wall-associated kinase family protein%3B FUNCTIONS IN: kinase activity%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: endomembrane system%2C integral to membrane%3B EXPRESSED IN: 19 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Wall-associated kinase (InterPro:IPR013695)%2C EGF-like calcium-binding%2C conserved site (InterPro:IPR018097)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C EGF calcium-binding (InterPro:IPR013091)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: Wall-associated kinase family protein (TAIR:AT1G79670.1)%3B Has 123075 Blast hits to 119967 proteins in 4481 species: Archae - 119%3B Bacteria - 13868%3B Metazoa - 46954%3B Fungi - 10147%3B Plants - 33759%3B Viruses - 489%3B Other Eukaryotes - 17739 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16330762, PMID:16920880, PMID:18055587, PMID:18650403, PMID:22253603, locus:2032875; locus_type=protein_coding
AT1G16260.3	chr1:005559708	0.0	C/5559708-5560915,5561011-5561088,5561169-5562018	AT1G16260.3 CDS AT1G16260 ID=AT1G16260.3; Parent=AT1G16260; Name=AT1G16260.3; Note=Wall-associated kinase family protein; computational_description=Wall-associated kinase family protein%3B FUNCTIONS IN: kinase activity%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: endomembrane system%2C integral to membrane%3B EXPRESSED IN: 19 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Wall-associated kinase (InterPro:IPR013695)%2C EGF-like calcium-binding%2C conserved site (InterPro:IPR018097)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C EGF calcium-binding (InterPro:IPR013091)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: Wall-associated kinase family protein (TAIR:AT1G79670.1)%3B Has 123075 Blast hits to 119967 proteins in 4481 species: Archae - 119%3B Bacteria - 13868%3B Metazoa - 46954%3B Fungi - 10147%3B Plants - 33759%3B Viruses - 489%3B Other Eukaryotes - 17739 (source: NCBI BLink).; Dbxref=PMID:16330762, PMID:16920880, PMID:18055587, PMID:18650403, PMID:22253603, locus:2032875; locus_type=protein_coding
AT1G16270.1	chr1:005563890	0.0	W/5563890-5566376,5566449-5566529,5566710-5566862,5566988-5567151,5567262-5567409,5567482-5567604,5567675-5567762,5567946-5568145	AT1G16270.1 CDS AT1G16270 ID=AT1G16270.1; Parent=AT1G16270; Name=AT1G16270.1; Note=kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein; conf_class=4; computational_description=Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain%3B FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity%2C protein kinase activity%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: cytosol%2C nucleus%3B CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270)%2C Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (TAIR:AT1G79570.1)%3B Has 120346 Blast hits to 118920 proteins in 4807 species: Archae - 116%3B Bacteria - 12493%3B Metazoa - 46290%3B Fungi - 10609%3B Plants - 32462%3B Viruses - 473%3B Other Eukaryotes - 17903 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:12119167, PMID:16429265, PMID:18433157, PMID:21477822, locus:2032895; locus_type=protein_coding
AT1G16270.2	chr1:005563890	0.0	W/5563890-5566376,5566449-5566529,5566710-5566862,5566988-5567151,5567262-5567409,5567482-5567604,5567675-5567762,5567946-5568145	AT1G16270.2 CDS AT1G16270 ID=AT1G16270.2; Parent=AT1G16270; Name=AT1G16270.2; Note=kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein; conf_class=4; computational_description=Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain%3B FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity%2C protein kinase activity%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: cytosol%2C nucleus%3B CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270)%2C Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (TAIR:AT1G79570.1)%3B Has 120346 Blast hits to 118920 proteins in 4807 species: Archae - 116%3B Bacteria - 12493%3B Metazoa - 46290%3B Fungi - 10609%3B Plants - 32462%3B Viruses - 473%3B Other Eukaryotes - 17903 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:12119167, PMID:16429265, PMID:18433157, PMID:21477822, locus:2032895; locus_type=protein_coding
AT1G16270.3	chr1:005563890	0.0	W/5563890-5566376,5566449-5566529,5566710-5566862,5566988-5567151,5567262-5567409,5567482-5567604,5567675-5567762,5567946-5568145	AT1G16270.3 CDS AT1G16270 ID=AT1G16270.3; Parent=AT1G16270; Name=AT1G16270.3; Note=kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein; Dbxref=PMID:12119167, PMID:16429265, PMID:18433157, PMID:21477822, locus:2032895; computational_description=Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain%3B FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity%2C protein kinase activity%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: cytosol%2C nucleus%3B CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270)%2C Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (TAIR:AT1G79570.1)%3B Has 120346 Blast hits to 118920 proteins in 4807 species: Archae - 116%3B Bacteria - 12493%3B Metazoa - 46290%3B Fungi - 10609%3B Plants - 32462%3B Viruses - 473%3B Other Eukaryotes - 17903 (source: NCBI BLink).; locus_type=protein_coding
AT1G16280.1	chr1:005568482	0.0	C/5568482-5568634,5568815-5568913,5569014-5569095,5569180-5569383,5569464-5569786,5569873-5570487	AT1G16280.1 CDS AT1G16280 ID=AT1G16280.1; Parent=AT1G16280; Name=AT1G16280.1; Note=RNA helicase 36; curator_summary=Encodes a putative DEAD-box RNA helicase. Essential for female gametogenesis.; conf_class=2; symbol=RH36; Alias=AtRH36, Arabidopsis thaliana RNA helicase 36, SWA3, SLOW WALKER 3; full_name=RNA helicase 36; computational_description=RNA helicase 36 (RH36)%3B FUNCTIONS IN: helicase activity%2C ATP binding%2C ATP-dependent helicase activity%2C nucleic acid binding%3B INVOLVED IN: post-embryonic development%2C embryo sac development%2C rRNA processing%3B LOCATED IN: nucleus%3B EXPRESSED IN: 30 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA helicase%2C DEAD-box type%2C Q motif (InterPro:IPR014014)%2C DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (InterPro:IPR011545)%2C RNA helicase%2C ATP-dependent%2C DEAD-box%2C conserved site (InterPro:IPR000629)%2C DEAD-like helicase%2C N-terminal (InterPro:IPR014001)%2C DNA/RNA helicase%2C C-terminal (InterPro:IPR001650)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain (InterPro:IPR014021)%3B BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G60990.1)%3B Has 43946 Blast hits to 42938 proteins in 3095 species: Archae - 969%3B Bacteria - 21832%3B Metazoa - 6240%3B Fungi - 4948%3B Plants - 2606%3B Viruses - 36%3B Other Eukaryotes - 7315 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18650403, PMID:20378763, PMID:20607362, PMID:20738726, locus:2032910; locus_type=protein_coding
AT1G16290.1	chr1:005570938	0.0	C/5570938-5570965,5571061-5571186,5571276-5571389,5571483-5571592,5571705-5571758,5571873-5572042,5572248-5572309,5572510-5572629,5572741-5572857,5572951-5573081,5573200-5573250,5573362-5573538	AT1G16290.1 CDS AT1G16290 ID=AT1G16290.1; Parent=AT1G16290; Name=AT1G16290.1; Note=transglycosylase; conf_class=2; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%2C vacuole%3B EXPRESSED IN: 19 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Lytic transglycosylase-like%2C catalytic (InterPro:IPR008258)%3B Has 171 Blast hits to 155 proteins in 40 species: Archae - 0%3B Bacteria - 54%3B Metazoa - 0%3B Fungi - 0%3B Plants - 55%3B Viruses - 0%3B Other Eukaryotes - 62 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14760709, PMID:18775970, PMID:20736450, locus:2032925; locus_type=protein_coding
AT1G16290.2	chr1:005570938	0.0	C/5570938-5570965,5571061-5571186,5571276-5571389,5571483-5571592,5571705-5571758,5571873-5572042,5572248-5572309,5572510-5572629,5572741-5572857,5572951-5573081,5573200-5573250,5573362-5573565	AT1G16290.2 CDS AT1G16290 ID=AT1G16290.2; Parent=AT1G16290; Name=AT1G16290.2; Note=transglycosylase; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%2C vacuole%3B EXPRESSED IN: 19 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Lytic transglycosylase-like%2C catalytic (InterPro:IPR008258)%3B Has 171 Blast hits to 155 proteins in 40 species: Archae - 0%3B Bacteria - 54%3B Metazoa - 0%3B Fungi - 0%3B Plants - 55%3B Viruses - 0%3B Other Eukaryotes - 62 (source: NCBI BLink).; Dbxref=PMID:14760709, PMID:18775970, PMID:20736450, locus:2032925; locus_type=protein_coding
AT1G16300.1	chr1:005574433	0.0	W/5574433-5574525,5574837-5574907,5575013-5575080,5575165-5575203,5575336-5575436,5575661-5575773,5575911-5576010,5576157-5576303,5576406-5576466,5576574-5576671,5576753-5576895,5577005-5577088,5577169-5577258,5577352-5577406	AT1G16300.1 CDS AT1G16300 ID=AT1G16300.1; Parent=AT1G16300; Name=AT1G16300.1; Note=glyceraldehyde-3-phosphate dehydrogenase of plastid 2; curator_summary=Encodes one of the chloroplast/plastid localized GAPDH isoforms (GAPCp1/At1g79530 and GAPCp2/At1g16300). gapcp double mutants display a drastic phenotype of arrested root development%2C dwarfism and sterility. GAPCps are important for the synthesis of serine in roots.; conf_class=2; symbol=GAPCP-2; full_name=glyceraldehyde-3-phosphate dehydrogenase of plastid 2; computational_description=glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (GAPCP-2)%3B CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase subfamily (InterPro:IPR000173)%2C Glyceraldehyde 3-phosphate dehydrogenase%2C catalytic domain (InterPro:IPR020829)%2C Glyceraldehyde-3-phosphate dehydrogenase%2C type I (InterPro:IPR006424)%2C Glyceraldehyde 3-phosphate dehydrogenase%2C catalytic domain%2C subgroup (InterPro:IPR020832)%2C Glyceraldehyde 3-phosphate dehydrogenase%2C active site (InterPro:IPR020830)%2C Glyceraldehyde 3-phosphate dehydrogenase%2C NAD(P) binding domain (InterPro:IPR020828)%3B BEST Arabidopsis thaliana protein match is: glyceraldehyde-3-phosphate dehydrogenase of plastid 1 (TAIR:AT1G79530.1)%3B Has 25238 Blast hits to 25227 proteins in 6343 species: Archae - 51%3B Bacteria - 10898%3B Metazoa - 2382%3B Fungi - 2852%3B Plants - 3834%3B Viruses - 0%3B Other Eukaryotes - 5221 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:14604444, PMID:15533878, PMID:18820081, PMID:18974062, PMID:19675149, locus:2032810; locus_type=protein_coding
AT1G16310.1	chr1:005578435	0.0	W/5578435-5578708,5579235-5579347,5579434-5579679,5579769-5579849,5579925-5580155,5580244-5580585	AT1G16310.1 CDS AT1G16310 ID=AT1G16310.1; Parent=AT1G16310; Name=AT1G16310.1; Note=Cation efflux family protein; conf_class=1; computational_description=Cation efflux family protein%3B FUNCTIONS IN: cation transmembrane transporter activity%3B INVOLVED IN: cation transport%2C transmembrane transport%3B LOCATED IN: membrane%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Cation efflux protein (InterPro:IPR002524)%3B BEST Arabidopsis thaliana protein match is: Cation efflux family protein (TAIR:AT1G79520.1)%3B Has 5067 Blast hits to 5063 proteins in 1838 species: Archae - 163%3B Bacteria - 4116%3B Metazoa - 44%3B Fungi - 281%3B Plants - 207%3B Viruses - 0%3B Other Eukaryotes - 256 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:17559518, PMID:20736450, locus:2032830; locus_type=protein_coding
AT1G16310.2	chr1:005579300	0.0	W/5579300-5579347,5579434-5579679,5579769-5579849,5579925-5580155,5580244-5580585	AT1G16310.2 CDS AT1G16310 ID=AT1G16310.2; Parent=AT1G16310; Name=AT1G16310.2; Note=Cation efflux family protein; computational_description=Cation efflux family protein%3B FUNCTIONS IN: cation transmembrane transporter activity%3B INVOLVED IN: cation transport%2C transmembrane transport%3B LOCATED IN: membrane%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Cation efflux protein (InterPro:IPR002524)%3B BEST Arabidopsis thaliana protein match is: Cation efflux family protein (TAIR:AT1G79520.1)%3B Has 5067 Blast hits to 5063 proteins in 1838 species: Archae - 163%3B Bacteria - 4116%3B Metazoa - 44%3B Fungi - 281%3B Plants - 207%3B Viruses - 0%3B Other Eukaryotes - 256 (source: NCBI BLink).; Dbxref=PMID:17559518, PMID:20736450, locus:2032830; locus_type=protein_coding
AT1G16320.1	chr1:005580951	0.0	W/5580951-5581282,5581443-5581932	AT1G16320.1 CDS AT1G16320 ID=AT1G16320.1; Parent=AT1G16320; Name=AT1G16320.1; Note=plant/protein (DUF2358); conf_class=2; computational_description=Uncharacterized conserved protein (DUF2358)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2358 (InterPro:IPR018790)%3B BEST Arabidopsis thaliana protein match is: Uncharacterized conserved protein (DUF2358) (TAIR:AT1G79510.2)%3B Has 274 Blast hits to 274 proteins in 79 species: Archae - 0%3B Bacteria - 78%3B Metazoa - 80%3B Fungi - 0%3B Plants - 99%3B Viruses - 0%3B Other Eukaryotes - 17 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, locus:2032850; locus_type=protein_coding
AT1G16330.1	chr1:005582387	0.0	C/5582387-5582522,5582614-5582792,5582886-5582984,5583089-5583148,5583228-5583389,5583479-5583568,5583697-5583819,5583898-5584182,5584395-5584449,5584693-5584783,5584884-5584929,5585046-5585100,5585354-5585411,5585503-5585557,5585791-5585845,5586036-5586071,5586227-5586323,5586410-5586461,5586555-5586615,5586758-5586793,5586890-5586950,5587031-5587070,5587377-5587391	AT1G16330.1 CDS AT1G16330 ID=AT1G16330.1; Parent=AT1G16330; Name=AT1G16330.1; Note=cyclin b3%3B1; curator_summary=core cell cycle genes; conf_class=5; symbol=CYCB3%3B1; full_name=cyclin b3%3B1; computational_description=cyclin b3%3B1 (CYCB3%3B1)%3B FUNCTIONS IN: cyclin-dependent protein kinase activity%3B INVOLVED IN: regulation of cell cycle%3B LOCATED IN: nucleus%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 10 growth stages%3B CONTAINS InterPro DOMAIN/s: Cyclin%2C C-terminal (InterPro:IPR004367)%2C Cyclin-like (InterPro:IPR011028)%2C Cyclin-related (InterPro:IPR013763)%2C Cyclin%2C N-terminal (InterPro:IPR006671)%2C Cyclin (InterPro:IPR006670)%3B BEST Arabidopsis thaliana protein match is: Cyclin B2%3B3 (TAIR:AT1G20610.1)%3B Has 4427 Blast hits to 4424 proteins in 376 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2128%3B Fungi - 557%3B Plants - 1053%3B Viruses - 34%3B Other Eukaryotes - 655 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:11971144, PMID:12169696, PMID:14500793, PMID:15908605, PMID:16489130, PMID:17329565, PMID:18650403, PMID:18775970, PMID:18923020, PMID:20706207, PMID:23671425, locus:2032870; locus_type=protein_coding
AT1G16340.1	chr1:005588123	0.0	C/5588123-5588179,5588259-5588306,5588386-5588433,5588522-5588620,5588723-5588767,5588882-5588940,5589064-5589148,5589229-5589303,5589423-5589482,5589565-5589630,5589929-5590025,5590241-5590338,5590431-5590469	AT1G16340.1 CDS AT1G16340 ID=AT1G16340.1; Parent=AT1G16340; Name=AT1G16340.1; Note=Aldolase superfamily protein; curator_summary=Encodes a protein with putative 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase activity. This gene share a very high sequence homology with its homologue AtkdsA1 (AT1G79500).; conf_class=2; symbol=ATKDSA2; computational_description=ATKDSA2%3B FUNCTIONS IN: 3-deoxy-8-phosphooctulonate synthase activity%3B INVOLVED IN: metabolic process%2C rhamnogalacturonan II biosynthetic process%3B LOCATED IN: endomembrane system%2C cytoplasm%3B EXPRESSED IN: 18 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: DAHP synthetase I/KDSA (InterPro:IPR006218)%2C Aldolase-type TIM barrel (InterPro:IPR013785)%2C 3-deoxy-8-phosphooctulonate synthase (InterPro:IPR006269)%3B BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT1G79500.4)%3B Has 7899 Blast hits to 7897 proteins in 2055 species: Archae - 64%3B Bacteria - 4967%3B Metazoa - 4%3B Fungi - 0%3B Plants - 58%3B Viruses - 0%3B Other Eukaryotes - 2806 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12754267, PMID:15070398, PMID:12970500, PMID:17411438, PMID:24993790, locus:2032885; locus_type=protein_coding
AT1G16340.2	chr1:005588123	0.0	C/5588123-5588179,5588259-5588306,5588386-5588433,5588522-5588620,5588723-5588767,5588882-5588940,5589064-5589148,5589229-5589303,5589423-5589482,5589565-5589630,5589929-5590025,5590241-5590338,5590431-5590469	AT1G16340.2 CDS AT1G16340 ID=AT1G16340.2; Parent=AT1G16340; Name=AT1G16340.2; Note=Aldolase superfamily protein; curator_summary=Encodes a protein with putative 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase activity. This gene share a very high sequence homology with its homologue AtkdsA1 (AT1G79500).; conf_class=1; symbol=ATKDSA2; computational_description=ATKDSA2%3B FUNCTIONS IN: 3-deoxy-8-phosphooctulonate synthase activity%3B INVOLVED IN: metabolic process%2C rhamnogalacturonan II biosynthetic process%3B LOCATED IN: endomembrane system%2C cytoplasm%3B EXPRESSED IN: 18 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: DAHP synthetase I/KDSA (InterPro:IPR006218)%2C Aldolase-type TIM barrel (InterPro:IPR013785)%2C 3-deoxy-8-phosphooctulonate synthase (InterPro:IPR006269)%3B BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT1G79500.4)%3B Has 7899 Blast hits to 7897 proteins in 2055 species: Archae - 64%3B Bacteria - 4967%3B Metazoa - 4%3B Fungi - 0%3B Plants - 58%3B Viruses - 0%3B Other Eukaryotes - 2806 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12754267, PMID:15070398, PMID:12970500, PMID:17411438, PMID:24993790, locus:2032885; locus_type=protein_coding
AT1G16340.3	chr1:005588123	0.0	C/5588123-5588179,5588259-5588306,5588386-5588433,5588522-5588620,5588723-5588767,5588882-5588940,5589064-5589148,5589229-5589303,5589423-5589482,5589565-5589630,5589929-5590025,5590241-5590338,5590431-5590469	AT1G16340.3 CDS AT1G16340 ID=AT1G16340.3; Parent=AT1G16340; Name=AT1G16340.3; Note=Aldolase superfamily protein; curator_summary=Encodes a protein with putative 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase activity. This gene share a very high sequence homology with its homologue AtkdsA1 (AT1G79500).; conf_class=2; symbol=ATKDSA2; computational_description=ATKDSA2%3B FUNCTIONS IN: 3-deoxy-8-phosphooctulonate synthase activity%3B INVOLVED IN: metabolic process%2C rhamnogalacturonan II biosynthetic process%3B LOCATED IN: endomembrane system%2C cytoplasm%3B EXPRESSED IN: 18 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: DAHP synthetase I/KDSA (InterPro:IPR006218)%2C Aldolase-type TIM barrel (InterPro:IPR013785)%2C 3-deoxy-8-phosphooctulonate synthase (InterPro:IPR006269)%3B BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT1G79500.4)%3B Has 7899 Blast hits to 7897 proteins in 2055 species: Archae - 64%3B Bacteria - 4967%3B Metazoa - 4%3B Fungi - 0%3B Plants - 58%3B Viruses - 0%3B Other Eukaryotes - 2806 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12754267, PMID:15070398, PMID:12970500, PMID:17411438, PMID:24993790, locus:2032885; locus_type=protein_coding
AT1G16340.4	chr1:005588123	0.0	C/5588123-5588179,5588259-5588306,5588386-5588433,5588522-5588620,5588723-5588767,5588882-5588940,5589064-5589148,5589229-5589303,5589423-5589482,5589565-5589630,5589929-5590025,5590235-5590338,5590431-5590469	AT1G16340.4 CDS AT1G16340 ID=AT1G16340.4; Parent=AT1G16340; Name=AT1G16340.4; Note=Aldolase superfamily protein; curator_summary=Encodes a protein with putative 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase activity. This gene share a very high sequence homology with its homologue AtkdsA1 (AT1G79500).; conf_class=3; symbol=ATKDSA2; computational_description=ATKDSA2%3B FUNCTIONS IN: 3-deoxy-8-phosphooctulonate synthase activity%3B INVOLVED IN: metabolic process%2C rhamnogalacturonan II biosynthetic process%3B LOCATED IN: endomembrane system%2C cytoplasm%3B EXPRESSED IN: 18 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: DAHP synthetase I/KDSA (InterPro:IPR006218)%2C Aldolase-type TIM barrel (InterPro:IPR013785)%2C 3-deoxy-8-phosphooctulonate synthase (InterPro:IPR006269)%3B BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT1G79500.4)%3B Has 7899 Blast hits to 7897 proteins in 2055 species: Archae - 64%3B Bacteria - 4967%3B Metazoa - 4%3B Fungi - 0%3B Plants - 58%3B Viruses - 0%3B Other Eukaryotes - 2806 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12754267, PMID:15070398, PMID:12970500, PMID:17411438, PMID:24993790, locus:2032885; locus_type=protein_coding
AT1G16350.1	chr1:005590951	0.0	W/5590951-5591353,5591469-5592064,5592171-5592350,5592444-5592701,5592801-5592872	AT1G16350.1 CDS AT1G16350 ID=AT1G16350.1; Parent=AT1G16350; Name=AT1G16350.1; Note=Aldolase-type TIM barrel family protein; conf_class=2; computational_description=Aldolase-type TIM barrel family protein%3B FUNCTIONS IN: IMP dehydrogenase activity%2C oxidoreductase activity%2C catalytic activity%3B INVOLVED IN: oxidation reduction%2C GMP biosynthetic process%2C metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: IMP dehydrogenase (InterPro:IPR005990)%2C IMP dehydrogenase related (InterPro:IPR018529)%2C Aldolase-type TIM barrel (InterPro:IPR013785)%2C IMP dehydrogenase/GMP reductase (InterPro:IPR001093)%2C IMP dehydrogenase / GMP reductase%2C conserved site (InterPro:IPR015875)%3B BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT1G79470.1)%3B Has 13531 Blast hits to 12775 proteins in 2707 species: Archae - 178%3B Bacteria - 7353%3B Metazoa - 466%3B Fungi - 180%3B Plants - 86%3B Viruses - 2%3B Other Eukaryotes - 5266 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12777046, PMID:16055689, PMID:24064926, locus:2032775; locus_type=protein_coding
AT1G16360.1	chr1:005593493	0.0	C/5593493-5593550,5593672-5593961,5594097-5594394,5594524-5594594,5594697-5594810,5594902-5594976,5595075-5595179	AT1G16360.1 CDS AT1G16360 ID=AT1G16360.1; Parent=AT1G16360; Name=AT1G16360.1; Note=LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein; conf_class=4; computational_description=LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: membrane%3B EXPRESSED IN: 8 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF284%2C transmembrane eukaryotic (InterPro:IPR005045)%3B BEST Arabidopsis thaliana protein match is: ALA-interacting subunit 5 (TAIR:AT1G79450.1)%3B Has 865 Blast hits to 864 proteins in 218 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 252%3B Fungi - 234%3B Plants - 160%3B Viruses - 0%3B Other Eukaryotes - 219 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:16607029, PMID:18775970, PMID:22253603, locus:2032780; locus_type=protein_coding
AT1G16360.2	chr1:005593493	0.0	C/5593493-5593550,5593672-5593961,5594097-5594394,5594524-5594594,5594697-5594810,5594902-5594976,5595075-5595133,5595706-5595793	AT1G16360.2 CDS AT1G16360 ID=AT1G16360.2; Parent=AT1G16360; Name=AT1G16360.2; Note=LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein; computational_description=LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: membrane%3B EXPRESSED IN: 8 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF284%2C transmembrane eukaryotic (InterPro:IPR005045)%3B BEST Arabidopsis thaliana protein match is: ALA-interacting subunit 5 (TAIR:AT1G79450.1)%3B Has 865 Blast hits to 864 proteins in 218 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 252%3B Fungi - 234%3B Plants - 160%3B Viruses - 0%3B Other Eukaryotes - 219 (source: NCBI BLink).; Dbxref=PMID:16607029, PMID:18775970, PMID:22253603, locus:2032780; locus_type=protein_coding
AT1G16360.4	chr1:005593605	0.0	C/5593605-5593961,5594097-5594394,5594524-5594594,5594697-5594810,5594902-5594976,5595075-5595179	AT1G16360.4 CDS AT1G16360 ID=AT1G16360.4; Parent=AT1G16360; Name=AT1G16360.4; Note=LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein; computational_description=LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: membrane%3B EXPRESSED IN: 8 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF284%2C transmembrane eukaryotic (InterPro:IPR005045)%3B BEST Arabidopsis thaliana protein match is: ALA-interacting subunit 5 (TAIR:AT1G79450.1)%3B Has 865 Blast hits to 864 proteins in 218 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 252%3B Fungi - 234%3B Plants - 160%3B Viruses - 0%3B Other Eukaryotes - 219 (source: NCBI BLink).; Dbxref=PMID:16607029, PMID:18775970, PMID:22253603, locus:2032780; locus_type=protein_coding
AT1G16360.3	chr1:005594043	0.0	C/5594043-5594394,5594524-5594594,5594697-5594810,5594902-5594976,5595075-5595179	AT1G16360.3 CDS AT1G16360 ID=AT1G16360.3; Parent=AT1G16360; Name=AT1G16360.3; Note=LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein; computational_description=LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: membrane%3B EXPRESSED IN: 8 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF284%2C transmembrane eukaryotic (InterPro:IPR005045)%3B BEST Arabidopsis thaliana protein match is: ALA-interacting subunit 5 (TAIR:AT1G79450.1)%3B Has 865 Blast hits to 864 proteins in 218 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 252%3B Fungi - 234%3B Plants - 160%3B Viruses - 0%3B Other Eukaryotes - 219 (source: NCBI BLink).; Dbxref=PMID:16607029, PMID:18775970, PMID:22253603, locus:2032780; locus_type=protein_coding
AT1G16360.5	chr1:005594043	0.0	C/5594043-5594394,5594524-5594594,5594697-5594810,5594902-5594976,5595075-5595179	AT1G16360.5 CDS AT1G16360 ID=AT1G16360.5; Parent=AT1G16360; Name=AT1G16360.5; Note=LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein; computational_description=LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: membrane%3B EXPRESSED IN: 8 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF284%2C transmembrane eukaryotic (InterPro:IPR005045)%3B BEST Arabidopsis thaliana protein match is: ALA-interacting subunit 5 (TAIR:AT1G79450.1)%3B Has 865 Blast hits to 864 proteins in 218 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 252%3B Fungi - 234%3B Plants - 160%3B Viruses - 0%3B Other Eukaryotes - 219 (source: NCBI BLink).; Dbxref=PMID:16607029, PMID:18775970, PMID:22253603, locus:2032780; locus_type=protein_coding
AT1G16370.1	chr1:005596762	0.0	W/5596762-5598327	AT1G16370.1 CDS AT1G16370 ID=AT1G16370.1; Parent=AT1G16370; Name=AT1G16370.1; Note=organic cation/carnitine transporter 6; conf_class=1; symbol=OCT6; Alias=ATOCT6, ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 6; full_name=organic cation/carnitine transporter 6; computational_description=organic cation/carnitine transporter 6 (OCT6)%3B FUNCTIONS IN: carbohydrate transmembrane transporter activity%2C sugar:hydrogen symporter activity%3B INVOLVED IN: transport%2C transmembrane transport%3B LOCATED IN: integral to membrane%2C membrane%3B EXPRESSED IN: 11 plant structures%3B EXPRESSED DURING: LP.06 six leaves visible%2C 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846)%2C General substrate transporter (InterPro:IPR005828)%2C Major facilitator superfamily%2C general substrate transporter (InterPro:IPR016196)%3B BEST Arabidopsis thaliana protein match is: organic cation/carnitine transporter5 (TAIR:AT1G79410.1)%3B Has 15766 Blast hits to 15675 proteins in 1589 species: Archae - 347%3B Bacteria - 7462%3B Metazoa - 3764%3B Fungi - 2418%3B Plants - 1153%3B Viruses - 0%3B Other Eukaryotes - 622 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:17521409, locus:2032790; locus_type=protein_coding
AT1G16380.1	chr1:005598453	0.0	C/5598453-5598732,5598873-5599813,5599903-5600880,5601209-5601367	AT1G16380.1 CDS AT1G16380 ID=AT1G16380.1; Parent=AT1G16380; Name=AT1G16380.1; Note=Cation/hydrogen exchanger family protein; curator_summary=member of Putative Na+/H+ antiporter family; conf_class=1; symbol=ATCHX1; computational_description=ATCHX1%3B FUNCTIONS IN: monovalent cation:hydrogen antiporter activity%2C sodium:hydrogen antiporter activity%3B INVOLVED IN: cation transport%3B LOCATED IN: integral to membrane%3B EXPRESSED IN: male gametophyte%2C flower%3B EXPRESSED DURING: 4 anthesis%3B CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153)%3B BEST Arabidopsis thaliana protein match is: cation/H+ exchanger 2 (TAIR:AT1G79400.1)%3B Has 3057 Blast hits to 3030 proteins in 956 species: Archae - 198%3B Bacteria - 2123%3B Metazoa - 0%3B Fungi - 129%3B Plants - 509%3B Viruses - 0%3B Other Eukaryotes - 98 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11500563, PMID:15347787, PMID:15341627, PMID:16055634, PMID:16361528, PMID:16607029, PMID:20736450, locus:2032805; locus_type=protein_coding
AT1G16390.1	chr1:005602921	0.0	W/5602921-5604477	AT1G16390.1 CDS AT1G16390 ID=AT1G16390.1; Parent=AT1G16390; Name=AT1G16390.1; Note=organic cation/carnitine transporter 3; conf_class=1; symbol=OCT3; Alias=ATOCT3, organic cation/carnitine transporter 3; full_name=organic cation/carnitine transporter 3; computational_description=organic cation/carnitine transporter 3 (3-Oct)%3B FUNCTIONS IN: carbohydrate transmembrane transporter activity%2C sugar:hydrogen symporter activity%3B INVOLVED IN: transport%2C transmembrane transport%3B LOCATED IN: integral to membrane%2C membrane%3B EXPRESSED IN: 9 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846)%2C General substrate transporter (InterPro:IPR005828)%2C Major facilitator superfamily%2C general substrate transporter (InterPro:IPR016196)%3B BEST Arabidopsis thaliana protein match is: organic cation/carnitine transporter 2 (TAIR:AT1G79360.1)%3B Has 22920 Blast hits to 22877 proteins in 2010 species: Archae - 415%3B Bacteria - 11427%3B Metazoa - 4445%3B Fungi - 4126%3B Plants - 1629%3B Viruses - 0%3B Other Eukaryotes - 878 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15273295, PMID:15634198, PMID:17521409, PMID:17660356, PMID:18252252, PMID:18650403, locus:2032825; locus_type=protein_coding
AT1G16400.1	chr1:005605231	0.0	W/5605231-5606199,5606377-5606650,5606911-5607281	AT1G16400.1 CDS AT1G16400 ID=AT1G16400.1; Parent=AT1G16400; Name=AT1G16400.1; Note=cytochrome P450%2C family 79%2C subfamily F%2C polypeptide 2; curator_summary=Encodes cytochrome P450 CYP79F2.; conf_class=2; symbol=CYP79F2; full_name=cytochrome P450%2C family 79%2C subfamily F%2C polypeptide 2; computational_description=cytochrome P450%2C family 79%2C subfamily F%2C polypeptide 2 (CYP79F2)%3B CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128)%2C Cytochrome P450%2C E-class%2C group I (InterPro:IPR002401)%2C Cytochrome P450%2C conserved site (InterPro:IPR017972)%3B BEST Arabidopsis thaliana protein match is: cytochrome p450 79f1 (TAIR:AT1G16410.1)%3B Has 27578 Blast hits to 27450 proteins in 1508 species: Archae - 44%3B Bacteria - 2254%3B Metazoa - 10521%3B Fungi - 5390%3B Plants - 8520%3B Viruses - 3%3B Other Eukaryotes - 846 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11226190, PMID:12529537, PMID:12970475, PMID:15280363, PMID:15579661, PMID:15584955, PMID:16173598, PMID:16406306, PMID:16553894, PMID:17189325, PMID:18400103, PMID:18650403, PMID:23329848, locus:2032865; locus_type=protein_coding
AT1G16410.1	chr1:005608862	0.0	W/5608862-5609833,5609945-5610218,5610748-5611118	AT1G16410.1 CDS AT1G16410 ID=AT1G16410.1; Parent=AT1G16410; Name=AT1G16410.1; Note=cytochrome p450 79f1; curator_summary=member of CYP79F; conf_class=2; symbol=CYP79F1; Alias=BUS1, BUSHY 1, SPS1, SUPERSHOOT 1; full_name=cytochrome p450 79f1; computational_description=cytochrome p450 79f1 (CYP79F1)%3B CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128)%2C Cytochrome P450%2C conserved site (InterPro:IPR017972)%2C Cytochrome P450%2C E-class%2C group I (InterPro:IPR002401)%3B BEST Arabidopsis thaliana protein match is: cytochrome P450%2C family 79%2C subfamily F%2C polypeptide 2 (TAIR:AT1G16400.1)%3B Has 27252 Blast hits to 27093 proteins in 1494 species: Archae - 44%3B Bacteria - 2170%3B Metazoa - 10673%3B Fungi - 5027%3B Plants - 8510%3B Viruses - 0%3B Other Eukaryotes - 828 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11133994, PMID:11226190, PMID:12609033, PMID:15194821, PMID:16258015, PMID:17435248, PMID:18650403, PMID:18593532, PMID:20634083, PMID:23144921, PMID:23329848, locus:2032890; locus_type=protein_coding
AT1G16410.2	chr1:005608862	0.0	W/5608862-5609833,5609945-5610244	AT1G16410.2 CDS AT1G16410 ID=AT1G16410.2; Parent=AT1G16410; Name=AT1G16410.2; Note=cytochrome p450 79f1; curator_summary=member of CYP79F; conf_class=2; symbol=CYP79F1; Alias=BUS1, BUSHY 1, SPS1, SUPERSHOOT 1; full_name=cytochrome p450 79f1; computational_description=cytochrome p450 79f1 (CYP79F1)%3B CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128)%2C Cytochrome P450%2C conserved site (InterPro:IPR017972)%2C Cytochrome P450%2C E-class%2C group I (InterPro:IPR002401)%3B BEST Arabidopsis thaliana protein match is: cytochrome P450%2C family 79%2C subfamily F%2C polypeptide 2 (TAIR:AT1G16400.1)%3B Has 27252 Blast hits to 27093 proteins in 1494 species: Archae - 44%3B Bacteria - 2170%3B Metazoa - 10673%3B Fungi - 5027%3B Plants - 8510%3B Viruses - 0%3B Other Eukaryotes - 828 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11133994, PMID:11226190, PMID:12609033, PMID:15194821, PMID:16258015, PMID:17435248, PMID:18650403, PMID:18593532, PMID:20634083, PMID:23144921, PMID:23329848, locus:2032890; locus_type=protein_coding
AT1G16420.1	chr1:005612304	0.0	C/5612304-5613100,5613481-5613829	AT1G16420.1 CDS AT1G16420 ID=AT1G16420.1; Parent=AT1G16420; Name=AT1G16420.1; Note=metacaspase 8; curator_summary=Encodes a metacaspase (cysteine-type endopeptidase) that is involved in promoting programmed cell death in response to hydrogen peroxide (H2O2)%2C UV light%2C and methyl viologen (MV). Transcript levels rise in response to UV-C%2C H2O2%2C and MV. In vitro assays demonstrate that this enzyme has a preference for cleaving after an arginine residue%2C and it has a pH optimum of 8.0.; conf_class=1; symbol=MC8; Alias=ATMC8, ARABIDOPSIS THALIANA METACASPASE 8, AtMCP2e, metacaspase 2e, MCP2e, metacaspase 2e; full_name=metacaspase 8; computational_description=metacaspase 8 (MC8)%3B CONTAINS InterPro DOMAIN/s: Peptidase C14%2C caspase catalytic (InterPro:IPR011600)%3B BEST Arabidopsis thaliana protein match is: metacaspase 7 (TAIR:AT1G79310.1)%3B Has 1067 Blast hits to 1064 proteins in 261 species: Archae - 3%3B Bacteria - 286%3B Metazoa - 0%3B Fungi - 258%3B Plants - 304%3B Viruses - 0%3B Other Eukaryotes - 216 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15047898, PMID:15326173, PMID:15634198, PMID:17998208, PMID:18467340, PMID:18650403, PMID:20736450, PMID:20565583, PMID:22112449, PMID:23344059, locus:2032905; locus_type=protein_coding
AT1G16430.1	chr1:005614632	0.0	W/5614632-5614787,5614877-5614942,5615167-5615397	AT1G16430.1 CDS AT1G16430 ID=AT1G16430.1; Parent=AT1G16430; Name=AT1G16430.1; Note=Surfeit locus protein 5 subunit 22 of Mediator complex; conf_class=2; computational_description=Surfeit locus protein 5 subunit 22 of Mediator complex%3B FUNCTIONS IN: RNA polymerase II transcription mediator activity%3B INVOLVED IN: regulation of transcription from RNA polymerase II promoter%3B LOCATED IN: mediator complex%3B EXPRESSED IN: male gametophyte%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%3B CONTAINS InterPro DOMAIN/s: Mediator complex%2C subunit Med22 (InterPro:IPR009332)%3B BEST Arabidopsis thaliana protein match is: Surfeit locus protein 5 subunit 22 of Mediator complex (TAIR:AT1G07950.1)%3B Has 238 Blast hits to 238 proteins in 79 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 161%3B Fungi - 12%3B Plants - 53%3B Viruses - 0%3B Other Eukaryotes - 12 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17526732, PMID:17560376, PMID:18775970, locus:2032920; locus_type=protein_coding
AT1G16440.1	chr1:005615841	0.0	W/5615841-5615879,5616100-5616713,5616786-5617632	AT1G16440.1 CDS AT1G16440 ID=AT1G16440.1; Parent=AT1G16440; Name=AT1G16440.1; Note=root hair specific 3; conf_class=2; symbol=RSH3; full_name=root hair specific 3; computational_description=root hair specific 3 (RSH3)%3B FUNCTIONS IN: kinase activity%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: root hair%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: AGC kinase 1.7 (TAIR:AT1G79250.2)%3B Has 101577 Blast hits to 89577 proteins in 2716 species: Archae - 38%3B Bacteria - 12727%3B Metazoa - 39279%3B Fungi - 11275%3B Plants - 19035%3B Viruses - 382%3B Other Eukaryotes - 18841 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:13678909, PMID:19448035, PMID:20736450, PMID:21477822, PMID:22253603, locus:2032785; locus_type=protein_coding
AT1G16445.1	chr1:005617811	0.0	W/5617811-5618012,5618143-5618206,5618436-5618634,5618722-5618795,5618909-5619064,5619174-5619303	AT1G16445.1 CDS AT1G16445 ID=AT1G16445.1; Parent=AT1G16445; Name=AT1G16445.1; Note=S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; conf_class=1; computational_description=S-adenosyl-L-methionine-dependent methyltransferases superfamily protein%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B CONTAINS InterPro DOMAIN/s: Putative rRNA methylase (InterPro:IPR010719)%3B Has 1208 Blast hits to 1208 proteins in 621 species: Archae - 2%3B Bacteria - 1139%3B Metazoa - 0%3B Fungi - 0%3B Plants - 33%3B Viruses - 0%3B Other Eukaryotes - 34 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:504956221; locus_type=protein_coding
AT1G16450.1	chr1:005619471	0.0	C/5619471-5619543	AT1G16450.1 tRNA AT1G16450 ID=AT1G16450.1; Parent=AT1G16450; Note=tRNA-Arg; computational_description=tRNA-Arg (anticodon: CCG); Dbxref=PMID:8980477, PMID:23066098, PMID:8980477, locus:3690651; Name=AT1G16450.1; locus_type=pre_trna
AT1G16460.1	chr1:005619848	0.0	C/5619848-5619949,5620038-5620105,5620167-5620230,5620312-5620393,5620507-5620565,5620637-5620696,5620811-5620973,5621072-5621196,5621492-5621554,5621693-5621752,5621871-5621981	AT1G16460.1 CDS AT1G16460 ID=AT1G16460.1; Parent=AT1G16460; Name=AT1G16460.1; Note=rhodanese homologue 2; curator_summary=encodes a cytoplasmic thiosulfate:cyanide sulfurtransferase%2C activity of which increased the rhodanese activity of transgenic yeast. Can also act as a mercaptopyruvate sulfurtransferase.; conf_class=2; symbol=RDH2; Alias=ATMST2, ARABIDOPSIS THALIANA MERCAPTOPYRUVATE SULFURTRANSFERASE 2, ATRDH2, rhodanese homologue 2, MST2, MERCAPTOPYRUVATE SULFURTRANSFERASE 2, ST2, SULFURTRANSFERASE 2, STR2, SULFURTRANSFERASE 2; full_name=rhodanese homologue 2; computational_description=rhodanese homologue 2 (RDH2)%3B FUNCTIONS IN: 3-mercaptopyruvate sulfurtransferase activity%2C thiosulfate sulfurtransferase activity%3B INVOLVED IN: sulfate transport%2C aging%3B LOCATED IN: cytosol%2C cytoplasm%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763)%2C Thiosulphate sulfurtransferase%2C conserved site (InterPro:IPR001307)%3B BEST Arabidopsis thaliana protein match is: mercaptopyruvate sulfurtransferase 1 (TAIR:AT1G79230.1)%3B Has 6167 Blast hits to 6142 proteins in 1437 species: Archae - 162%3B Bacteria - 3582%3B Metazoa - 248%3B Fungi - 148%3B Plants - 95%3B Viruses - 0%3B Other Eukaryotes - 1932 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10951223, PMID:10951216, PMID:10734224, PMID:12093376, PMID:12492831, PMID:12482606, PMID:15181206, PMID:16307302, PMID:17408957, PMID:20453115, PMID:21189252, locus:2032800; locus_type=protein_coding
AT1G16460.2	chr1:005619848	0.0	C/5619848-5619949,5620038-5620105,5620167-5620230,5620312-5620393,5620507-5620565,5620637-5620696,5620811-5620973,5621072-5621196,5621492-5621554,5621693-5621752,5621871-5622050,5622479-5622481	AT1G16460.2 CDS AT1G16460 ID=AT1G16460.2; Parent=AT1G16460; Name=AT1G16460.2; Note=rhodanese homologue 2; curator_summary=encodes a cytoplasmic thiosulfate:cyanide sulfurtransferase%2C activity of which increased the rhodanese activity of transgenic yeast. Can also act as a mercaptopyruvate sulfurtransferase.; conf_class=2; symbol=RDH2; Alias=ATMST2, ARABIDOPSIS THALIANA MERCAPTOPYRUVATE SULFURTRANSFERASE 2, ATRDH2, rhodanese homologue 2, MST2, MERCAPTOPYRUVATE SULFURTRANSFERASE 2, ST2, SULFURTRANSFERASE 2, STR2, SULFURTRANSFERASE 2; full_name=rhodanese homologue 2; computational_description=rhodanese homologue 2 (RDH2)%3B FUNCTIONS IN: 3-mercaptopyruvate sulfurtransferase activity%2C thiosulfate sulfurtransferase activity%3B INVOLVED IN: sulfate transport%2C aging%3B LOCATED IN: cytosol%2C cytoplasm%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763)%2C Thiosulphate sulfurtransferase%2C conserved site (InterPro:IPR001307)%3B BEST Arabidopsis thaliana protein match is: mercaptopyruvate sulfurtransferase 1 (TAIR:AT1G79230.1)%3B Has 6167 Blast hits to 6142 proteins in 1437 species: Archae - 162%3B Bacteria - 3582%3B Metazoa - 248%3B Fungi - 148%3B Plants - 95%3B Viruses - 0%3B Other Eukaryotes - 1932 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10951223, PMID:10951216, PMID:10734224, PMID:12093376, PMID:12492831, PMID:12482606, PMID:15181206, PMID:16307302, PMID:17408957, PMID:20453115, PMID:21189252, locus:2032800; locus_type=protein_coding
AT1G16460.3	chr1:005619848	0.0	C/5619848-5619949,5620038-5620105,5620167-5620230,5620312-5620393,5620507-5620565,5620637-5620696,5620811-5620973,5621072-5621196,5621492-5621554,5621693-5621752,5621871-5621981	AT1G16460.3 CDS AT1G16460 ID=AT1G16460.3; Parent=AT1G16460; Name=AT1G16460.3; Note=rhodanese homologue 2; curator_summary=encodes a cytoplasmic thiosulfate:cyanide sulfurtransferase%2C activity of which increased the rhodanese activity of transgenic yeast. Can also act as a mercaptopyruvate sulfurtransferase.; conf_class=3; symbol=RDH2; Alias=ATMST2, ARABIDOPSIS THALIANA MERCAPTOPYRUVATE SULFURTRANSFERASE 2, ATRDH2, rhodanese homologue 2, MST2, MERCAPTOPYRUVATE SULFURTRANSFERASE 2, ST2, SULFURTRANSFERASE 2, STR2, SULFURTRANSFERASE 2; full_name=rhodanese homologue 2; computational_description=rhodanese homologue 2 (RDH2)%3B FUNCTIONS IN: 3-mercaptopyruvate sulfurtransferase activity%2C thiosulfate sulfurtransferase activity%3B INVOLVED IN: sulfate transport%2C aging%3B LOCATED IN: cytosol%2C cytoplasm%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763)%2C Thiosulphate sulfurtransferase%2C conserved site (InterPro:IPR001307)%3B BEST Arabidopsis thaliana protein match is: mercaptopyruvate sulfurtransferase 1 (TAIR:AT1G79230.1)%3B Has 6167 Blast hits to 6142 proteins in 1437 species: Archae - 162%3B Bacteria - 3582%3B Metazoa - 248%3B Fungi - 148%3B Plants - 95%3B Viruses - 0%3B Other Eukaryotes - 1932 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10951223, PMID:10951216, PMID:10734224, PMID:12093376, PMID:12492831, PMID:12482606, PMID:15181206, PMID:16307302, PMID:17408957, PMID:20453115, PMID:21189252, locus:2032800; locus_type=protein_coding
AT1G16460.4	chr1:005619848	0.0	C/5619848-5619949,5620038-5620105,5620167-5620230,5620312-5620393,5620507-5620565,5620637-5620696,5620811-5620973,5621072-5621196,5621492-5621554,5621693-5621752,5621871-5621981	AT1G16460.4 CDS AT1G16460 ID=AT1G16460.4; Parent=AT1G16460; Name=AT1G16460.4; Note=rhodanese homologue 2; curator_summary=encodes a cytoplasmic thiosulfate:cyanide sulfurtransferase%2C activity of which increased the rhodanese activity of transgenic yeast. Can also act as a mercaptopyruvate sulfurtransferase.; conf_class=6; symbol=RDH2; Alias=ATMST2, ARABIDOPSIS THALIANA MERCAPTOPYRUVATE SULFURTRANSFERASE 2, ATRDH2, rhodanese homologue 2, MST2, MERCAPTOPYRUVATE SULFURTRANSFERASE 2, ST2, SULFURTRANSFERASE 2, STR2, SULFURTRANSFERASE 2; full_name=rhodanese homologue 2; computational_description=rhodanese homologue 2 (RDH2)%3B FUNCTIONS IN: 3-mercaptopyruvate sulfurtransferase activity%2C thiosulfate sulfurtransferase activity%3B INVOLVED IN: sulfate transport%2C aging%3B LOCATED IN: cytosol%2C cytoplasm%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763)%2C Thiosulphate sulfurtransferase%2C conserved site (InterPro:IPR001307)%3B BEST Arabidopsis thaliana protein match is: mercaptopyruvate sulfurtransferase 1 (TAIR:AT1G79230.1)%3B Has 6167 Blast hits to 6142 proteins in 1437 species: Archae - 162%3B Bacteria - 3582%3B Metazoa - 248%3B Fungi - 148%3B Plants - 95%3B Viruses - 0%3B Other Eukaryotes - 1932 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:10951223, PMID:10951216, PMID:10734224, PMID:12093376, PMID:12492831, PMID:12482606, PMID:15181206, PMID:16307302, PMID:17408957, PMID:20453115, PMID:21189252, locus:2032800; locus_type=protein_coding
AT1G16460.5	chr1:005620153	0.0	C/5620153-5620230,5620312-5620393,5620507-5620565,5620637-5620696,5620811-5620973,5621072-5621196,5621492-5621554,5621693-5621752,5621871-5622050,5622479-5622481	AT1G16460.5 CDS AT1G16460 ID=AT1G16460.5; Parent=AT1G16460; Name=AT1G16460.5; Note=rhodanese homologue 2; symbol=RDH2; Alias=ATMST2, ARABIDOPSIS THALIANA MERCAPTOPYRUVATE SULFURTRANSFERASE 2, ATRDH2, rhodanese homologue 2, MST2, MERCAPTOPYRUVATE SULFURTRANSFERASE 2, ST2, SULFURTRANSFERASE 2, STR2, SULFURTRANSFERASE 2; full_name=rhodanese homologue 2; curator_summary=encodes a cytoplasmic thiosulfate:cyanide sulfurtransferase%2C activity of which increased the rhodanese activity of transgenic yeast. Can also act as a mercaptopyruvate sulfurtransferase.; computational_description=rhodanese homologue 2 (RDH2)%3B FUNCTIONS IN: 3-mercaptopyruvate sulfurtransferase activity%2C thiosulfate sulfurtransferase activity%3B INVOLVED IN: sulfate transport%2C aging%3B LOCATED IN: cytosol%2C cytoplasm%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763)%2C Thiosulphate sulfurtransferase%2C conserved site (InterPro:IPR001307)%3B BEST Arabidopsis thaliana protein match is: mercaptopyruvate sulfurtransferase 1 (TAIR:AT1G79230.1)%3B Has 6167 Blast hits to 6142 proteins in 1437 species: Archae - 162%3B Bacteria - 3582%3B Metazoa - 248%3B Fungi - 148%3B Plants - 95%3B Viruses - 0%3B Other Eukaryotes - 1932 (source: NCBI BLink).; Dbxref=PMID:10951223, PMID:10951216, PMID:10734224, PMID:12093376, PMID:12492831, PMID:12482606, PMID:15181206, PMID:16307302, PMID:17408957, PMID:20453115, PMID:21189252, locus:2032800; locus_type=protein_coding
AT1G16460.6	chr1:005620153	0.0	C/5620153-5620230,5620312-5620393,5620507-5620565,5620637-5620696,5620811-5620973,5621072-5621196,5621492-5621554,5621693-5621752,5621871-5621981	AT1G16460.6 CDS AT1G16460 ID=AT1G16460.6; Parent=AT1G16460; Name=AT1G16460.6; Note=rhodanese homologue 2; symbol=RDH2; Alias=ATMST2, ARABIDOPSIS THALIANA MERCAPTOPYRUVATE SULFURTRANSFERASE 2, ATRDH2, rhodanese homologue 2, MST2, MERCAPTOPYRUVATE SULFURTRANSFERASE 2, ST2, SULFURTRANSFERASE 2, STR2, SULFURTRANSFERASE 2; full_name=rhodanese homologue 2; curator_summary=encodes a cytoplasmic thiosulfate:cyanide sulfurtransferase%2C activity of which increased the rhodanese activity of transgenic yeast. Can also act as a mercaptopyruvate sulfurtransferase.; computational_description=rhodanese homologue 2 (RDH2)%3B FUNCTIONS IN: 3-mercaptopyruvate sulfurtransferase activity%2C thiosulfate sulfurtransferase activity%3B INVOLVED IN: sulfate transport%2C aging%3B LOCATED IN: cytosol%2C cytoplasm%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763)%2C Thiosulphate sulfurtransferase%2C conserved site (InterPro:IPR001307)%3B BEST Arabidopsis thaliana protein match is: mercaptopyruvate sulfurtransferase 1 (TAIR:AT1G79230.1)%3B Has 6167 Blast hits to 6142 proteins in 1437 species: Archae - 162%3B Bacteria - 3582%3B Metazoa - 248%3B Fungi - 148%3B Plants - 95%3B Viruses - 0%3B Other Eukaryotes - 1932 (source: NCBI BLink).; Dbxref=PMID:10951223, PMID:10951216, PMID:10734224, PMID:12093376, PMID:12492831, PMID:12482606, PMID:15181206, PMID:16307302, PMID:17408957, PMID:20453115, PMID:21189252, locus:2032800; locus_type=protein_coding
AT1G16470.1	chr1:005623122	0.0	W/5623122-5623162,5623241-5623317,5623401-5623465,5623589-5623635,5623728-5623803,5623891-5623958,5624266-5624335,5624619-5624704,5624871-5624933,5625228-5625293,5625391-5625439	AT1G16470.1 CDS AT1G16470 ID=AT1G16470.1; Parent=AT1G16470; Name=AT1G16470.1; Note=proteasome subunit PAB1; curator_summary=Encodes 20S proteasome subunit PAB1 (PAB1).; conf_class=2; symbol=PAB1; full_name=proteasome subunit PAB1; computational_description=proteasome subunit PAB1 (PAB1)%3B FUNCTIONS IN: peptidase activity%2C endopeptidase activity%2C threonine-type endopeptidase activity%3B INVOLVED IN: response to zinc ion%2C ubiquitin-dependent protein catabolic process%3B LOCATED IN: proteasome core complex%2C proteasome complex%2C cytosolic ribosome%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Proteasome%2C alpha-subunit%2C conserved site (InterPro:IPR000426)%2C Proteasome%2C subunit alpha/beta (InterPro:IPR001353)%3B BEST Arabidopsis thaliana protein match is: N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (TAIR:AT1G79210.3)%3B Has 6828 Blast hits to 6827 proteins in 505 species: Archae - 887%3B Bacteria - 62%3B Metazoa - 2417%3B Fungi - 1560%3B Plants - 881%3B Viruses - 0%3B Other Eukaryotes - 1021 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10363660, PMID:9611183, PMID:9373170, PMID:12952558, PMID:15734919, PMID:15821981, PMID:15769804, PMID:16055689, PMID:16679420, PMID:17828791, PMID:18650403, PMID:19880396, PMID:20516081, locus:2032820; locus_type=protein_coding
AT1G16470.2	chr1:005623122	0.0	W/5623122-5623162,5623241-5623317,5623401-5623465,5623589-5623635,5623728-5623803,5623891-5623958,5624266-5624335,5624619-5624704,5624871-5624933,5625228-5625293,5625391-5625439	AT1G16470.2 CDS AT1G16470 ID=AT1G16470.2; Parent=AT1G16470; Name=AT1G16470.2; Note=proteasome subunit PAB1; curator_summary=Encodes 20S proteasome subunit PAB1 (PAB1).; conf_class=2; symbol=PAB1; full_name=proteasome subunit PAB1; computational_description=proteasome subunit PAB1 (PAB1)%3B FUNCTIONS IN: peptidase activity%2C endopeptidase activity%2C threonine-type endopeptidase activity%3B INVOLVED IN: response to zinc ion%2C ubiquitin-dependent protein catabolic process%3B LOCATED IN: proteasome core complex%2C proteasome complex%2C cytosolic ribosome%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Proteasome%2C alpha-subunit%2C conserved site (InterPro:IPR000426)%2C Proteasome%2C subunit alpha/beta (InterPro:IPR001353)%3B BEST Arabidopsis thaliana protein match is: N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (TAIR:AT1G79210.3)%3B Has 6828 Blast hits to 6827 proteins in 505 species: Archae - 887%3B Bacteria - 62%3B Metazoa - 2417%3B Fungi - 1560%3B Plants - 881%3B Viruses - 0%3B Other Eukaryotes - 1021 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10363660, PMID:9611183, PMID:9373170, PMID:12952558, PMID:15734919, PMID:15821981, PMID:15769804, PMID:16055689, PMID:16679420, PMID:17828791, PMID:18650403, PMID:19880396, PMID:20516081, locus:2032820; locus_type=protein_coding
AT1G16480.2	chr1:005625742	0.0	C/5625742-5625794,5625872-5628605	AT1G16480.2 CDS AT1G16480 ID=AT1G16480.2; Parent=AT1G16480; Name=AT1G16480.2; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; conf_class=6; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G13650.1)%3B Has 59612 Blast hits to 13645 proteins in 226 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 112%3B Fungi - 34%3B Plants - 58832%3B Viruses - 0%3B Other Eukaryotes - 630 (source: NCBI BLink).; conf_rating=**; Dbxref=locus:2032840; locus_type=protein_coding
AT1G16480.1	chr1:005625843	0.0	C/5625843-5628656	AT1G16480.1 CDS AT1G16480 ID=AT1G16480.1; Parent=AT1G16480; Name=AT1G16480.1; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; conf_class=4; computational_description=Tetratricopeptide repeat (TPR)-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G13650.1)%3B Has 59612 Blast hits to 13645 proteins in 226 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 112%3B Fungi - 34%3B Plants - 58832%3B Viruses - 0%3B Other Eukaryotes - 630 (source: NCBI BLink).; conf_rating=***; Dbxref=locus:2032840; locus_type=protein_coding
AT1G05227.1	chr1:005628923	0.0	W/5628923-5629213	AT1G05227.1 lnc_RNA AT1G05227 ID=AT1G05227.1; Parent=AT1G05227; Name=AT1G05227.1; locus_type=long_noncoding_rna
AT1G16489.1	chr1:005629183	0.0	W/5629183-5631029	AT1G16489.1 antisense_lncRNA AT1G16489 ID=AT1G16489.1; Parent=AT1G16489; curator_summary=Potential natural antisense gene%2C locus overlaps with AT1G16490; Dbxref=locus:4515102538; Name=AT1G16489.1; description=Natural antisense transcript overlaps with AT1G16490; Note=Natural antisense transcript overlaps with AT1G16490; locus_type=antisense_long_noncoding_rna
AT1G16489.2	chr1:005629194	0.0	W/5629194-5631131	AT1G16489.2 antisense_lncRNA AT1G16489 ID=AT1G16489.2; Parent=AT1G16489; Name=AT1G16489.2; description=Natural antisense transcript overlaps with AT1G16490; curator_summary=Potential natural antisense gene%2C locus overlaps with AT1G16490; Note=Natural antisense transcript overlaps with AT1G16490; Dbxref=locus:4515102538; locus_type=antisense_long_noncoding_rna
AT1G16489.3	chr1:005629264	0.0	W/5629264-5630905	AT1G16489.3 antisense_lncRNA AT1G16489 ID=AT1G16489.3; Parent=AT1G16489; Name=AT1G16489.3; description=Natural antisense transcript overlaps with AT1G16490; curator_summary=Potential natural antisense gene%2C locus overlaps with AT1G16490; Note=Natural antisense transcript overlaps with AT1G16490; Dbxref=locus:4515102538; locus_type=antisense_long_noncoding_rna
AT1G16489.4	chr1:005629640	0.0	W/5629640-5631088	AT1G16489.4 antisense_lncRNA AT1G16489 ID=AT1G16489.4; Parent=AT1G16489; Name=AT1G16489.4; description=Natural antisense transcript overlaps with AT1G16490; curator_summary=Potential natural antisense gene%2C locus overlaps with AT1G16490; Note=Natural antisense transcript overlaps with AT1G16490; Dbxref=locus:4515102538; locus_type=antisense_long_noncoding_rna
AT1G16490.1	chr1:005629859	0.0	C/5629859-5630414,5630495-5630624,5630706-5630844	AT1G16490.1 CDS AT1G16490 ID=AT1G16490.1; Parent=AT1G16490; Name=AT1G16490.1; Note=myb domain protein 58; curator_summary=Member of the R2R3 factor gene family.; conf_class=2; symbol=MYB58; Alias=ATMYB58, MYB DOMAIN PROTEIN 58; full_name=myb domain protein 58; computational_description=myb domain protein 58 (MYB58)%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%2C Homeodomain-related (InterPro:IPR012287)%2C Myb transcription factor (InterPro:IPR015495)%3B BEST Arabidopsis thaliana protein match is: myb domain protein 63 (TAIR:AT1G79180.1)%3B Has 8863 Blast hits to 8152 proteins in 473 species: Archae - 0%3B Bacteria - 3%3B Metazoa - 752%3B Fungi - 456%3B Plants - 5848%3B Viruses - 6%3B Other Eukaryotes - 1798 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:11597504, PMID:19122102, PMID:19838072, PMID:22197883, PMID:25506770, locus:2032860; locus_type=protein_coding
AT1G16490.2	chr1:005629859	0.0	C/5629859-5630476	AT1G16490.2 CDS AT1G16490 ID=AT1G16490.2; Parent=AT1G16490; Name=AT1G16490.2; Note=myb domain protein 58; symbol=MYB58; Alias=ATMYB58, MYB DOMAIN PROTEIN 58; full_name=myb domain protein 58; curator_summary=Member of the R2R3 factor gene family.; computational_description=myb domain protein 58 (MYB58)%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%2C Homeodomain-related (InterPro:IPR012287)%2C Myb transcription factor (InterPro:IPR015495)%3B BEST Arabidopsis thaliana protein match is: myb domain protein 63 (TAIR:AT1G79180.1)%3B Has 8863 Blast hits to 8152 proteins in 473 species: Archae - 0%3B Bacteria - 3%3B Metazoa - 752%3B Fungi - 456%3B Plants - 5848%3B Viruses - 6%3B Other Eukaryotes - 1798 (source: NCBI BLink).; Dbxref=PMID:11118137, PMID:11597504, PMID:19122102, PMID:19838072, PMID:22197883, PMID:25506770, locus:2032860; locus_type=protein_coding
AT1TE18210	chr1:005634545	0.0	C/5634545-5635101	AT1TE18210 transposable_element AT1TE18210 ID=AT1TE18210; Name=AT1TE18210; Alias=BRODYAGA2
AT1TE18215	chr1:005635102	0.0	C/5635102-5635464	AT1TE18215 transposable_element AT1TE18215 ID=AT1TE18215; Name=AT1TE18215; Alias=ATREP9
AT1TE18220	chr1:005636842	0.0	C/5636842-5638117	AT1TE18220 transposable_element AT1TE18220 ID=AT1TE18220; Name=AT1TE18220; Alias=HELITRONY1E
AT1G16500.1	chr1:005639079	0.0	W/5639079-5639306,5639444-5639995	AT1G16500.1 CDS AT1G16500 ID=AT1G16500.1; Parent=AT1G16500; Name=AT1G16500.1; Note=filamentous hemagglutinin transporter; conf_class=1; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G79160.1)%3B Has 136 Blast hits to 134 proteins in 17 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 4%3B Plants - 131%3B Viruses - 1%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:2032900; locus_type=protein_coding
AT1G05233.1	chr1:005642764	0.0	W/5642764-5642985	AT1G05233.1 lnc_RNA AT1G05233 ID=AT1G05233.1; Parent=AT1G05233; Name=AT1G05233.1; locus_type=long_noncoding_rna
AT1G16510.1	chr1:005644784	0.0	C/5644784-5645227	AT1G16510.1 CDS AT1G16510 ID=AT1G16510.1; Parent=AT1G16510; Name=AT1G16510.1; Note=SAUR-like auxin-responsive protein family; curator_summary=Encodes a clade III SAUR gene with a distinctive expression pattern in root meristems. It is normally expressed in the quiescent center and cortex/endodermis initials and upon auxin stimulation%2C the expression is found in the endodermal layer. Overexpression studies suggest roles in cell expansion and auxin transport.; conf_class=1; Alias=SAUR41, SMALL AUXIN UPREGULATED 41; computational_description=SAUR-like auxin-responsive protein family %3B CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676)%3B BEST Arabidopsis thaliana protein match is: SAUR-like auxin-responsive protein family (TAIR:AT3G12830.1)%3B Has 1122 Blast hits to 1120 proteins in 25 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1121%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15489280, PMID:16461388, PMID:17497164, PMID:23396598, PMID:23517122, PMID:23759547, locus:2032915; locus_type=protein_coding
AT1G05237.1	chr1:005646666	0.0	W/5646666-5646969	AT1G05237.1 lnc_RNA AT1G05237 ID=AT1G05237.1; Parent=AT1G05237; Name=AT1G05237.1; locus_type=long_noncoding_rna
AT1G16515.1	chr1:005647605	0.0	C/5647605-5647709	AT1G16515.1 CDS AT1G16515 ID=AT1G16515.1; Parent=AT1G16515; Name=AT1G16515.1; Note=transmembrane protein; conf_class=1; computational_description=unknown protein%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:1006230703; locus_type=protein_coding
AT1G16515.2	chr1:005647605	0.0	C/5647605-5647868	AT1G16515.2 CDS AT1G16515 ID=AT1G16515.2; Parent=AT1G16515; Name=AT1G16515.2; Note=transmembrane protein; computational_description=unknown protein%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).; Dbxref=locus:1006230703; locus_type=protein_coding
AT1G16520.1	chr1:005648904	0.0	W/5648904-5649173,5649613-5649681,5649784-5649837,5649983-5650040,5650125-5650199,5650280-5650513,5650596-5650641,5650744-5650822,5650906-5650998	AT1G16520.1 CDS AT1G16520 ID=AT1G16520.1; Parent=AT1G16520; Name=AT1G16520.1; Note=interactor of constitutive active ROPs protein; conf_class=2; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56080.1)%3B Has 243 Blast hits to 234 proteins in 69 species: Archae - 2%3B Bacteria - 2%3B Metazoa - 61%3B Fungi - 9%3B Plants - 125%3B Viruses - 0%3B Other Eukaryotes - 44 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2017933; locus_type=protein_coding
AT1G16530.1	chr1:005651470	0.0	C/5651470-5651784,5652657-5652839	AT1G16530.1 CDS AT1G16530 ID=AT1G16530.1; Parent=AT1G16530; Name=AT1G16530.1; Note=ASYMMETRIC LEAVES 2-like 9; conf_class=4; symbol=ASL9; Alias=LBD3, LOB DOMAIN-CONTAINING PROTEIN 3; full_name=ASYMMETRIC LEAVES 2-like 9; computational_description=ASYMMETRIC LEAVES 2-like 9 (ASL9)%3B CONTAINS InterPro DOMAIN/s: Lateral organ boundaries%2C LOB (InterPro:IPR004883)%3B BEST Arabidopsis thaliana protein match is: Lateral organ boundaries (LOB) domain family protein (TAIR:AT2G30130.1)%3B Has 986 Blast hits to 981 proteins in 24 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 986%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:12068116, PMID:12040093, PMID:15695462, PMID:16673935, PMID:17061125, PMID:17485849, PMID:19154202, PMID:22589469, locus:2032931; locus_type=protein_coding
AT1TE18270	chr1:005653689	0.0	W/5653689-5653775	AT1TE18270 transposable_element AT1TE18270 ID=AT1TE18270; Name=AT1TE18270; Alias=ATCOPIA28
AT1TE18275	chr1:005655868	0.0	C/5655868-5656061	AT1TE18275 transposable_element AT1TE18275 ID=AT1TE18275; Name=AT1TE18275; Alias=HARBINGER
AT1TE18280	chr1:005657195	0.0	W/5657195-5657320	AT1TE18280 transposable_element AT1TE18280 ID=AT1TE18280; Name=AT1TE18280; Alias=HELITRONY3
AT1TE18285	chr1:005657321	0.0	C/5657321-5657736	AT1TE18285 transposable_element AT1TE18285 ID=AT1TE18285; Name=AT1TE18285; Alias=ATREP13
AT1TE18290	chr1:005657737	0.0	C/5657737-5657944	AT1TE18290 transposable_element AT1TE18290 ID=AT1TE18290; Name=AT1TE18290; Alias=ATREP10B
AT1TE18295	chr1:005657945	0.0	C/5657945-5659382	AT1TE18295 transposable_element AT1TE18295 ID=AT1TE18295; Name=AT1TE18295; Alias=ATREP10B
AT1TE18300	chr1:005659383	0.0	C/5659383-5659406	AT1TE18300 transposable_element AT1TE18300 ID=AT1TE18300; Name=AT1TE18300; Alias=ATREP10B
AT1G16540.1	chr1:005659465	0.0	W/5659465-5659567,5659991-5660089,5660290-5660348,5660449-5660767,5660917-5661043,5661335-5661440,5661523-5661568,5661828-5661866,5661936-5662092,5662299-5662401,5662641-5662757,5662937-5663014,5663119-5663220,5663339-5663438,5663779-5663889,5664005-5664069,5664137-5664288,5664358-5664590,5664661-5664794,5664897-5665007,5665103-5665201	AT1G16540.1 CDS AT1G16540 ID=AT1G16540.1; Parent=AT1G16540; Name=AT1G16540.1; Note=molybdenum cofactor sulfurase (LOS5) (ABA3); curator_summary=Encodes molybdenum cofactor sulfurase. Involved in Moco biosynthesis. Involved in the conversion of ABA-aldehyde to ABA%2C the last step of abscisic acid (ABA) biosynthesis. %3Ci%3Esir%3C/i%3E loss-of-function mutants are resistant to sirtinol%2C a modulator of auxin signaling.N terminal domain is similar to bacterial NifS suggesting a common mechanism for sulphur mobilization and transfer. Also involved in protein import into chloroplasts.; conf_class=2; symbol=ABA3; Alias=ACI2, ALTERED CHLOROPLAST IMPORT 2, ATABA3, AtLOS5, LOS5, LOW OSMOTIC STRESS 5, SIR3, SIRTINOL RESISTANT 3; full_name=ABA DEFICIENT 3; computational_description=ABA DEFICIENT 3 (ABA3)%3B CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase%2C major domain (InterPro:IPR015424)%2C MOSC%2C N-terminal beta barrel (InterPro:IPR005303)%2C Aminotransferase%2C class V/Cysteine desulfurase (InterPro:IPR000192)%2C Molybdenum cofactor sulfurase%2C C-terminal (InterPro:IPR005302)%2C Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (InterPro:IPR015421)%3B BEST Arabidopsis thaliana protein match is: Molybdenum cofactor sulfurase family protein (TAIR:AT1G30910.1)%3B Has 7940 Blast hits to 7904 proteins in 1914 species: Archae - 94%3B Bacteria - 5396%3B Metazoa - 390%3B Fungi - 394%3B Plants - 292%3B Viruses - 1%3B Other Eukaryotes - 1373 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:8893542, PMID:12663220, PMID:15710899, PMID:15862093, PMID:16959575, PMID:19622176, PMID:20374530, PMID:21633512, PMID:21829351, PMID:21889046, PMID:22004669, PMID:22412184, PMID:23178483, PMID:23326325, PMID:23581509, PMID:23754812, PMID:24330104, locus:2017943; locus_type=protein_coding
AT1G16540.2	chr1:005659465	0.0	W/5659465-5659567,5659991-5660089,5660290-5660348,5660449-5660767,5660917-5661043,5661335-5661440,5661523-5661568,5661828-5661866,5661936-5662092,5662299-5662401,5662641-5662757,5662937-5663014,5663119-5663220,5663339-5663438,5663779-5663889,5664005-5664069,5664137-5664288,5664358-5664649	AT1G16540.2 CDS AT1G16540 ID=AT1G16540.2; Parent=AT1G16540; Name=AT1G16540.2; Note=molybdenum cofactor sulfurase (LOS5) (ABA3); symbol=ABA3; Alias=ACI2, ALTERED CHLOROPLAST IMPORT 2, ATABA3, AtLOS5, LOS5, LOW OSMOTIC STRESS 5, SIR3, SIRTINOL RESISTANT 3; full_name=ABA DEFICIENT 3; curator_summary=Encodes molybdenum cofactor sulfurase. Involved in Moco biosynthesis. Involved in the conversion of ABA-aldehyde to ABA%2C the last step of abscisic acid (ABA) biosynthesis. %3Ci%3Esir%3C/i%3E loss-of-function mutants are resistant to sirtinol%2C a modulator of auxin signaling.N terminal domain is similar to bacterial NifS suggesting a common mechanism for sulphur mobilization and transfer. Also involved in protein import into chloroplasts.; computational_description=ABA DEFICIENT 3 (ABA3)%3B CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase%2C major domain (InterPro:IPR015424)%2C MOSC%2C N-terminal beta barrel (InterPro:IPR005303)%2C Aminotransferase%2C class V/Cysteine desulfurase (InterPro:IPR000192)%2C Molybdenum cofactor sulfurase%2C C-terminal (InterPro:IPR005302)%2C Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (InterPro:IPR015421)%3B BEST Arabidopsis thaliana protein match is: Molybdenum cofactor sulfurase family protein (TAIR:AT1G30910.1)%3B Has 7940 Blast hits to 7904 proteins in 1914 species: Archae - 94%3B Bacteria - 5396%3B Metazoa - 390%3B Fungi - 394%3B Plants - 292%3B Viruses - 1%3B Other Eukaryotes - 1373 (source: NCBI BLink).; Dbxref=PMID:8893542, PMID:12663220, PMID:15710899, PMID:15862093, PMID:16959575, PMID:19622176, PMID:20374530, PMID:21633512, PMID:21829351, PMID:21889046, PMID:22004669, PMID:22412184, PMID:23178483, PMID:23326325, PMID:23581509, PMID:23754812, PMID:24330104, locus:2017943; locus_type=protein_coding
AT1G16540.3	chr1:005659465	0.0	W/5659465-5659567,5659991-5660089,5660290-5660348,5660449-5660767,5660917-5661043,5661335-5661440,5661523-5661568,5661828-5661866,5661936-5662092,5662299-5662401,5662641-5662757,5662937-5663014,5663119-5663220,5663339-5663438,5663779-5663889,5664005-5664069,5664137-5664590,5664661-5664794,5664897-5665007,5665103-5665201	AT1G16540.3 CDS AT1G16540 ID=AT1G16540.3; Parent=AT1G16540; Name=AT1G16540.3; Note=molybdenum cofactor sulfurase (LOS5) (ABA3); symbol=ABA3; Alias=ACI2, ALTERED CHLOROPLAST IMPORT 2, ATABA3, AtLOS5, LOS5, LOW OSMOTIC STRESS 5, SIR3, SIRTINOL RESISTANT 3; full_name=ABA DEFICIENT 3; curator_summary=Encodes molybdenum cofactor sulfurase. Involved in Moco biosynthesis. Involved in the conversion of ABA-aldehyde to ABA%2C the last step of abscisic acid (ABA) biosynthesis. %3Ci%3Esir%3C/i%3E loss-of-function mutants are resistant to sirtinol%2C a modulator of auxin signaling.N terminal domain is similar to bacterial NifS suggesting a common mechanism for sulphur mobilization and transfer. Also involved in protein import into chloroplasts.; computational_description=ABA DEFICIENT 3 (ABA3)%3B CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase%2C major domain (InterPro:IPR015424)%2C MOSC%2C N-terminal beta barrel (InterPro:IPR005303)%2C Aminotransferase%2C class V/Cysteine desulfurase (InterPro:IPR000192)%2C Molybdenum cofactor sulfurase%2C C-terminal (InterPro:IPR005302)%2C Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (InterPro:IPR015421)%3B BEST Arabidopsis thaliana protein match is: Molybdenum cofactor sulfurase family protein (TAIR:AT1G30910.1)%3B Has 7940 Blast hits to 7904 proteins in 1914 species: Archae - 94%3B Bacteria - 5396%3B Metazoa - 390%3B Fungi - 394%3B Plants - 292%3B Viruses - 1%3B Other Eukaryotes - 1373 (source: NCBI BLink).; Dbxref=PMID:8893542, PMID:12663220, PMID:15710899, PMID:15862093, PMID:16959575, PMID:19622176, PMID:20374530, PMID:21633512, PMID:21829351, PMID:21889046, PMID:22004669, PMID:22412184, PMID:23178483, PMID:23326325, PMID:23581509, PMID:23754812, PMID:24330104, locus:2017943; locus_type=protein_coding
AT1G16550.1	chr1:005665658	0.0	W/5665658-5668200	AT1G16550.1 pseudogenic_transcript AT1G16550 ID=AT1G16550.1; Parent=AT1G16550; Name=AT1G16550.1; Note=pseudogene; computational_description=pseudogene%2C putative cell division cycle protein%2C blastp match of 53%25 identity and 2.4e-136 P-value to GP|6069665|dbj|BAA85441.1||AP000616 EST D15969(C1695) corresponds to a region of the predicted gene.~similar to valosin-containing protein (U20213) %7BOryza sativa (japonica cultivar-group)%7D; Dbxref=PMID:20032078, PMID:20032078, locus:2824890; locus_type=pseudogene
AT1G05243.1	chr1:005668441	0.0	C/5668441-5668939	AT1G05243.1 antisense_lncRNA AT1G05243 ID=AT1G05243.1; Parent=AT1G05243; Name=AT1G05243.1; description=Natural antisense transcript overlaps with AT1G16560; Note=Natural antisense transcript overlaps with AT1G16560; locus_type=antisense_long_noncoding_rna
AT1G16560.1	chr1:005668945	0.0	W/5668945-5669039,5669160-5669409,5669493-5669689,5669779-5669966,5670045-5670343	AT1G16560.1 CDS AT1G16560 ID=AT1G16560.1; Parent=AT1G16560; Name=AT1G16560.1; Note=Per1-like family protein; conf_class=2; computational_description=Per1-like family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Per1-like (InterPro:IPR007217)%3B BEST Arabidopsis thaliana protein match is: Per1-like family protein (TAIR:AT5G62130.1)%3B Has 343 Blast hits to 337 proteins in 140 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 103%3B Fungi - 158%3B Plants - 79%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17064408, locus:2017968; locus_type=protein_coding
AT1G16560.2	chr1:005668945	0.0	W/5668945-5669039,5669160-5669409,5669493-5669689,5669779-5669966,5670045-5670343	AT1G16560.2 CDS AT1G16560 ID=AT1G16560.2; Parent=AT1G16560; Name=AT1G16560.2; Note=Per1-like family protein; conf_class=2; computational_description=Per1-like family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Per1-like (InterPro:IPR007217)%3B BEST Arabidopsis thaliana protein match is: Per1-like family protein (TAIR:AT5G62130.1)%3B Has 343 Blast hits to 337 proteins in 140 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 103%3B Fungi - 158%3B Plants - 79%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17064408, locus:2017968; locus_type=protein_coding
AT1G16560.3	chr1:005668945	0.0	W/5668945-5669039,5669160-5669409,5669493-5669689,5669779-5669966,5670045-5670343	AT1G16560.3 CDS AT1G16560 ID=AT1G16560.3; Parent=AT1G16560; Name=AT1G16560.3; Note=Per1-like family protein; conf_class=2; computational_description=Per1-like family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Per1-like (InterPro:IPR007217)%3B BEST Arabidopsis thaliana protein match is: Per1-like family protein (TAIR:AT5G62130.1)%3B Has 343 Blast hits to 337 proteins in 140 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 103%3B Fungi - 158%3B Plants - 79%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17064408, locus:2017968; locus_type=protein_coding
AT1G16560.5	chr1:005668945	0.0	W/5668945-5669039,5669160-5669409,5669493-5669689,5669779-5669966,5670045-5670343	AT1G16560.5 CDS AT1G16560 ID=AT1G16560.5; Parent=AT1G16560; Name=AT1G16560.5; Note=Per1-like family protein; Dbxref=PMID:17064408, locus:2017968; computational_description=Per1-like family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Per1-like (InterPro:IPR007217)%3B BEST Arabidopsis thaliana protein match is: Per1-like family protein (TAIR:AT5G62130.1)%3B Has 343 Blast hits to 337 proteins in 140 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 103%3B Fungi - 158%3B Plants - 79%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).; locus_type=protein_coding
AT1G16560.6	chr1:005668945	0.0	W/5668945-5669039,5669160-5669409,5669493-5669689,5669779-5669966,5670045-5670343	AT1G16560.6 CDS AT1G16560 ID=AT1G16560.6; Parent=AT1G16560; Name=AT1G16560.6; Note=Per1-like family protein; Dbxref=PMID:17064408, locus:2017968; computational_description=Per1-like family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Per1-like (InterPro:IPR007217)%3B BEST Arabidopsis thaliana protein match is: Per1-like family protein (TAIR:AT5G62130.1)%3B Has 343 Blast hits to 337 proteins in 140 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 103%3B Fungi - 158%3B Plants - 79%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).; locus_type=protein_coding
AT1G16560.7	chr1:005668945	0.0	W/5668945-5669039,5669160-5669409,5669493-5669689,5669779-5669966,5670045-5670343	AT1G16560.7 CDS AT1G16560 ID=AT1G16560.7; Parent=AT1G16560; Name=AT1G16560.7; Note=Per1-like family protein; Dbxref=PMID:17064408, locus:2017968; computational_description=Per1-like family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Per1-like (InterPro:IPR007217)%3B BEST Arabidopsis thaliana protein match is: Per1-like family protein (TAIR:AT5G62130.1)%3B Has 343 Blast hits to 337 proteins in 140 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 103%3B Fungi - 158%3B Plants - 79%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).; locus_type=protein_coding
AT1G16560.8	chr1:005668945	0.0	W/5668945-5669039,5669160-5669409,5669493-5669689,5669779-5669966,5670045-5670343	AT1G16560.8 CDS AT1G16560 ID=AT1G16560.8; Parent=AT1G16560; Name=AT1G16560.8; Note=Per1-like family protein; Dbxref=PMID:17064408, locus:2017968; computational_description=Per1-like family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Per1-like (InterPro:IPR007217)%3B BEST Arabidopsis thaliana protein match is: Per1-like family protein (TAIR:AT5G62130.1)%3B Has 343 Blast hits to 337 proteins in 140 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 103%3B Fungi - 158%3B Plants - 79%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).; locus_type=protein_coding
AT1G16560.9	chr1:005668945	0.0	W/5668945-5669039,5669160-5669409,5669493-5669689,5669779-5669966,5670045-5670343	AT1G16560.9 CDS AT1G16560 ID=AT1G16560.9; Parent=AT1G16560; Name=AT1G16560.9; Note=Per1-like family protein; Dbxref=PMID:17064408, locus:2017968; computational_description=Per1-like family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Per1-like (InterPro:IPR007217)%3B BEST Arabidopsis thaliana protein match is: Per1-like family protein (TAIR:AT5G62130.1)%3B Has 343 Blast hits to 337 proteins in 140 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 103%3B Fungi - 158%3B Plants - 79%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).; locus_type=protein_coding
AT1G16560.4	chr1:005669234	0.0	W/5669234-5669413,5669493-5669689,5669779-5669966,5670045-5670343	AT1G16560.4 CDS AT1G16560 ID=AT1G16560.4; Parent=AT1G16560; Name=AT1G16560.4; Note=Per1-like family protein; conf_class=2; computational_description=Per1-like family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Per1-like (InterPro:IPR007217)%3B BEST Arabidopsis thaliana protein match is: Per1-like family protein (TAIR:AT5G62130.1)%3B Has 343 Blast hits to 337 proteins in 140 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 103%3B Fungi - 158%3B Plants - 79%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17064408, locus:2017968; locus_type=protein_coding
AT1G16570.1	chr1:005670763	0.0	C/5670763-5670789,5670880-5671008,5671102-5671177,5671250-5671302,5671421-5671593,5671658-5671800,5671889-5671994,5672085-5672148,5672256-5672322,5672433-5672522,5672617-5672765,5672862-5672999,5673091-5673146,5673223-5673256,5673331-5673423	AT1G16570.1 CDS AT1G16570 ID=AT1G16570.1; Parent=AT1G16570; Name=AT1G16570.1; Note=UDP-Glycosyltransferase superfamily protein; conf_class=2; computational_description=UDP-Glycosyltransferase superfamily protein%3B FUNCTIONS IN: transferase activity%2C transferring glycosyl groups%3B INVOLVED IN: biosynthetic process%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Glycosyl transferase%2C group 1 (InterPro:IPR001296)%3B Has 834 Blast hits to 816 proteins in 377 species: Archae - 30%3B Bacteria - 354%3B Metazoa - 141%3B Fungi - 141%3B Plants - 50%3B Viruses - 0%3B Other Eukaryotes - 118 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18710526, locus:2017963; locus_type=protein_coding
AT1G16570.2	chr1:005670763	0.0	C/5670763-5670789,5670880-5671177,5671250-5671302,5671421-5671593,5671658-5671800,5671889-5671994,5672085-5672148,5672256-5672322,5672433-5672522,5672617-5672765,5672862-5672999,5673091-5673146,5673223-5673256,5673331-5673423	AT1G16570.2 CDS AT1G16570 ID=AT1G16570.2; Parent=AT1G16570; Name=AT1G16570.2; Note=UDP-Glycosyltransferase superfamily protein; conf_class=4; computational_description=UDP-Glycosyltransferase superfamily protein%3B FUNCTIONS IN: transferase activity%2C transferring glycosyl groups%3B INVOLVED IN: biosynthetic process%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Glycosyl transferase%2C group 1 (InterPro:IPR001296)%3B Has 834 Blast hits to 816 proteins in 377 species: Archae - 30%3B Bacteria - 354%3B Metazoa - 141%3B Fungi - 141%3B Plants - 50%3B Viruses - 0%3B Other Eukaryotes - 118 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:18710526, locus:2017963; locus_type=protein_coding
AT1G16590.1	chr1:005673886	0.0	W/5673886-5673913,5674005-5674085,5674160-5674272,5674362-5674551,5674655-5674890	AT1G16590.1 CDS AT1G16590 ID=AT1G16590.1; Parent=AT1G16590; Name=AT1G16590.1; Note=DNA-binding HORMA family protein; curator_summary=putative translesion synthesis polymerase zeta subunit%2C homologous to Y-family DNA polymerases%2C contains BRCT domain. Mutants are sensitive to UV-B radiation. Gene is involved in damage-tolerance mechanisms through translesion synthesis(TLS).; conf_class=2; symbol=REV7; computational_description=REV7%3B CONTAINS InterPro DOMAIN/s: DNA-binding HORMA (InterPro:IPR003511)%3B Has 307 Blast hits to 307 proteins in 122 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 157%3B Fungi - 86%3B Plants - 49%3B Viruses - 0%3B Other Eukaryotes - 15 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15645454, PMID:15908599, PMID:21549648, locus:2017958; locus_type=protein_coding
AT1G16590.2	chr1:005674034	0.0	W/5674034-5674085,5674160-5674272,5674362-5674551,5674655-5674890	AT1G16590.2 CDS AT1G16590 ID=AT1G16590.2; Parent=AT1G16590; Name=AT1G16590.2; Note=DNA-binding HORMA family protein; symbol=REV7; curator_summary=putative translesion synthesis polymerase zeta subunit%2C homologous to Y-family DNA polymerases%2C contains BRCT domain. Mutants are sensitive to UV-B radiation. Gene is involved in damage-tolerance mechanisms through translesion synthesis(TLS).; computational_description=REV7%3B CONTAINS InterPro DOMAIN/s: DNA-binding HORMA (InterPro:IPR003511)%3B Has 307 Blast hits to 307 proteins in 122 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 157%3B Fungi - 86%3B Plants - 49%3B Viruses - 0%3B Other Eukaryotes - 15 (source: NCBI BLink).; Dbxref=PMID:15645454, PMID:15908599, PMID:21549648, locus:2017958; locus_type=protein_coding
AT1G16600.1	chr1:005675169	0.0	W/5675169-5675433	AT1G16600.1 pseudogenic_transcript AT1G16600 ID=AT1G16600.1; Parent=AT1G16600; Name=AT1G16600.1; index=1; Note=pseudogene; computational_description=pseudogene%2C putative cycloartenol synthase; Dbxref=locus:2824895, locus:2824895; locus_type=pseudogene
AT1G16610.1	chr1:005675925	0.0	C/5675925-5676006,5676282-5676319,5676429-5676495,5676761-5676877,5677017-5677082,5677154-5677376,5677466-5677634,5677725-5677805,5677892-5677938,5678127-5678209,5678293-5678364,5678487-5678686	AT1G16610.1 CDS AT1G16610 ID=AT1G16610.1; Parent=AT1G16610; Name=AT1G16610.1; Note=arginine/serine-rich 45; curator_summary=Encodes SR45%2C a member of the highly conserved family of serine/arginine-rich (SR) proteins%2C which play key roles in pre-mRNA splicing and other aspects of RNA metabolism. SR45 is a spliceosome protein%2C interacts with SR33 and the U1-70K protein of the U1 snRNP. Also involved in plant sugar response. sr45-1 mutation confers hypersensitivity to glucose during early seedling growth.; conf_class=2; symbol=SR45; Alias=AtSR45, RNPS1; full_name=arginine/serine-rich 45; computational_description=arginine/serine-rich 45 (SR45)%3B FUNCTIONS IN: protein binding%2C RNA binding%3B INVOLVED IN: sugar mediated signaling pathway%2C nuclear mRNA splicing%2C via spliceosome%2C RNA splicing%3B LOCATED IN: nucleoplasm%2C nuclear speck%2C nucleolus%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: arginine/serine-rich protein-related (TAIR:AT1G79100.1)%3B Has 62425 Blast hits to 38843 proteins in 1486 species: Archae - 39%3B Bacteria - 6019%3B Metazoa - 27409%3B Fungi - 8585%3B Plants - 6560%3B Viruses - 1329%3B Other Eukaryotes - 12484 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10740297, PMID:10593939, PMID:14576160, PMID:14675452, PMID:15270675, PMID:15496452, PMID:16520337, PMID:16807317, PMID:17435084, PMID:17556373, PMID:18402682, PMID:19403727, PMID:19435936, PMID:16895966, PMID:18414657, PMID:20699397, PMID:21935421, PMID:22274613, PMID:22617873, PMID:24832081, PMID:22563826, PMID:25268622, PMID:25366180, locus:2017948; locus_type=protein_coding
AT1G16610.2	chr1:005675925	0.0	C/5675925-5676006,5676282-5676319,5676429-5676495,5676761-5676877,5677017-5677082,5677154-5677355,5677466-5677634,5677725-5677805,5677892-5677938,5678127-5678209,5678293-5678364,5678487-5678686	AT1G16610.2 CDS AT1G16610 ID=AT1G16610.2; Parent=AT1G16610; Name=AT1G16610.2; Note=arginine/serine-rich 45; curator_summary=Encodes SR45%2C a member of the highly conserved family of serine/arginine-rich (SR) proteins%2C which play key roles in pre-mRNA splicing and other aspects of RNA metabolism. SR45 is a spliceosome protein%2C interacts with SR33 and the U1-70K protein of the U1 snRNP. Also involved in plant sugar response. sr45-1 mutation confers hypersensitivity to glucose during early seedling growth.; conf_class=2; symbol=SR45; Alias=AtSR45, RNPS1; full_name=arginine/serine-rich 45; computational_description=arginine/serine-rich 45 (SR45)%3B FUNCTIONS IN: protein binding%2C RNA binding%3B INVOLVED IN: sugar mediated signaling pathway%2C nuclear mRNA splicing%2C via spliceosome%2C RNA splicing%3B LOCATED IN: nucleoplasm%2C nuclear speck%2C nucleolus%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: arginine/serine-rich protein-related (TAIR:AT1G79100.1)%3B Has 62425 Blast hits to 38843 proteins in 1486 species: Archae - 39%3B Bacteria - 6019%3B Metazoa - 27409%3B Fungi - 8585%3B Plants - 6560%3B Viruses - 1329%3B Other Eukaryotes - 12484 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10740297, PMID:10593939, PMID:14576160, PMID:14675452, PMID:15270675, PMID:15496452, PMID:16520337, PMID:16807317, PMID:17435084, PMID:17556373, PMID:18402682, PMID:19403727, PMID:19435936, PMID:16895966, PMID:18414657, PMID:20699397, PMID:21935421, PMID:22274613, PMID:22617873, PMID:24832081, PMID:22563826, PMID:25268622, PMID:25366180, locus:2017948; locus_type=protein_coding
AT1G16610.3	chr1:005675925	0.0	C/5675925-5676006,5676282-5676319,5676429-5676495,5676728-5676877,5677017-5677082,5677154-5677376,5677466-5677634,5677725-5677805,5677892-5677938,5678127-5678209,5678293-5678364,5678487-5678686	AT1G16610.3 CDS AT1G16610 ID=AT1G16610.3; Parent=AT1G16610; Name=AT1G16610.3; Note=arginine/serine-rich 45; curator_summary=Encodes SR45%2C a member of the highly conserved family of serine/arginine-rich (SR) proteins%2C which play key roles in pre-mRNA splicing and other aspects of RNA metabolism. SR45 is a spliceosome protein%2C interacts with SR33 and the U1-70K protein of the U1 snRNP. Also involved in plant sugar response. sr45-1 mutation confers hypersensitivity to glucose during early seedling growth.; conf_class=6; symbol=SR45; Alias=AtSR45, RNPS1; full_name=arginine/serine-rich 45; computational_description=arginine/serine-rich 45 (SR45)%3B FUNCTIONS IN: protein binding%2C RNA binding%3B INVOLVED IN: sugar mediated signaling pathway%2C nuclear mRNA splicing%2C via spliceosome%2C RNA splicing%3B LOCATED IN: nucleoplasm%2C nuclear speck%2C nucleolus%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: arginine/serine-rich protein-related (TAIR:AT1G79100.1)%3B Has 62425 Blast hits to 38843 proteins in 1486 species: Archae - 39%3B Bacteria - 6019%3B Metazoa - 27409%3B Fungi - 8585%3B Plants - 6560%3B Viruses - 1329%3B Other Eukaryotes - 12484 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:10740297, PMID:10593939, PMID:14576160, PMID:14675452, PMID:15270675, PMID:15496452, PMID:16520337, PMID:16807317, PMID:17435084, PMID:17556373, PMID:18402682, PMID:19403727, PMID:19435936, PMID:16895966, PMID:18414657, PMID:20699397, PMID:21935421, PMID:22274613, PMID:22617873, PMID:24832081, PMID:22563826, PMID:25268622, PMID:25366180, locus:2017948; locus_type=protein_coding
AT1G16610.5	chr1:005676177	0.0	C/5676177-5676186,5676282-5676319,5676429-5676495,5676761-5676877,5677017-5677082,5677154-5677355,5677466-5677634,5677725-5677805,5677892-5677938,5678127-5678209,5678293-5678364,5678487-5678686	AT1G16610.5 CDS AT1G16610 ID=AT1G16610.5; Parent=AT1G16610; Name=AT1G16610.5; Note=arginine/serine-rich 45; symbol=SR45; Alias=AtSR45, RNPS1; full_name=arginine/serine-rich 45; curator_summary=Encodes SR45%2C a member of the highly conserved family of serine/arginine-rich (SR) proteins%2C which play key roles in pre-mRNA splicing and other aspects of RNA metabolism. SR45 is a spliceosome protein%2C interacts with SR33 and the U1-70K protein of the U1 snRNP. Also involved in plant sugar response. sr45-1 mutation confers hypersensitivity to glucose during early seedling growth.; computational_description=arginine/serine-rich 45 (SR45)%3B FUNCTIONS IN: protein binding%2C RNA binding%3B INVOLVED IN: sugar mediated signaling pathway%2C nuclear mRNA splicing%2C via spliceosome%2C RNA splicing%3B LOCATED IN: nucleoplasm%2C nuclear speck%2C nucleolus%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: arginine/serine-rich protein-related (TAIR:AT1G79100.1)%3B Has 62425 Blast hits to 38843 proteins in 1486 species: Archae - 39%3B Bacteria - 6019%3B Metazoa - 27409%3B Fungi - 8585%3B Plants - 6560%3B Viruses - 1329%3B Other Eukaryotes - 12484 (source: NCBI BLink).; Dbxref=PMID:10740297, PMID:10593939, PMID:14576160, PMID:14675452, PMID:15270675, PMID:15496452, PMID:16520337, PMID:16807317, PMID:17435084, PMID:17556373, PMID:18402682, PMID:19403727, PMID:19435936, PMID:16895966, PMID:18414657, PMID:20699397, PMID:21935421, PMID:22274613, PMID:22617873, PMID:24832081, PMID:22563826, PMID:25268622, PMID:25366180, locus:2017948; locus_type=protein_coding
AT1G16610.4	chr1:005676278	0.0	C/5676278-5676319,5676429-5676495,5676761-5676877,5677017-5677082,5677154-5677355,5677466-5677634,5677725-5677805,5677892-5677938,5678127-5678209,5678293-5678364,5678487-5678686	AT1G16610.4 CDS AT1G16610 ID=AT1G16610.4; Parent=AT1G16610; Name=AT1G16610.4; Note=arginine/serine-rich 45; symbol=SR45; Alias=AtSR45, RNPS1; full_name=arginine/serine-rich 45; curator_summary=Encodes SR45%2C a member of the highly conserved family of serine/arginine-rich (SR) proteins%2C which play key roles in pre-mRNA splicing and other aspects of RNA metabolism. SR45 is a spliceosome protein%2C interacts with SR33 and the U1-70K protein of the U1 snRNP. Also involved in plant sugar response. sr45-1 mutation confers hypersensitivity to glucose during early seedling growth.; computational_description=arginine/serine-rich 45 (SR45)%3B FUNCTIONS IN: protein binding%2C RNA binding%3B INVOLVED IN: sugar mediated signaling pathway%2C nuclear mRNA splicing%2C via spliceosome%2C RNA splicing%3B LOCATED IN: nucleoplasm%2C nuclear speck%2C nucleolus%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: arginine/serine-rich protein-related (TAIR:AT1G79100.1)%3B Has 62425 Blast hits to 38843 proteins in 1486 species: Archae - 39%3B Bacteria - 6019%3B Metazoa - 27409%3B Fungi - 8585%3B Plants - 6560%3B Viruses - 1329%3B Other Eukaryotes - 12484 (source: NCBI BLink).; Dbxref=PMID:10740297, PMID:10593939, PMID:14576160, PMID:14675452, PMID:15270675, PMID:15496452, PMID:16520337, PMID:16807317, PMID:17435084, PMID:17556373, PMID:18402682, PMID:19403727, PMID:19435936, PMID:16895966, PMID:18414657, PMID:20699397, PMID:21935421, PMID:22274613, PMID:22617873, PMID:24832081, PMID:22563826, PMID:25268622, PMID:25366180, locus:2017948; locus_type=protein_coding
AT1G16610.6	chr1:005676278	0.0	C/5676278-5676319,5676429-5676495,5676761-5676877,5677017-5677082,5677154-5677376,5677466-5677634,5677725-5677805,5677892-5677938,5678127-5678209,5678293-5678364,5678487-5678686	AT1G16610.6 CDS AT1G16610 ID=AT1G16610.6; Parent=AT1G16610; Name=AT1G16610.6; Note=arginine/serine-rich 45; symbol=SR45; Alias=AtSR45, RNPS1; full_name=arginine/serine-rich 45; curator_summary=Encodes SR45%2C a member of the highly conserved family of serine/arginine-rich (SR) proteins%2C which play key roles in pre-mRNA splicing and other aspects of RNA metabolism. SR45 is a spliceosome protein%2C interacts with SR33 and the U1-70K protein of the U1 snRNP. Also involved in plant sugar response. sr45-1 mutation confers hypersensitivity to glucose during early seedling growth.; computational_description=arginine/serine-rich 45 (SR45)%3B FUNCTIONS IN: protein binding%2C RNA binding%3B INVOLVED IN: sugar mediated signaling pathway%2C nuclear mRNA splicing%2C via spliceosome%2C RNA splicing%3B LOCATED IN: nucleoplasm%2C nuclear speck%2C nucleolus%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: arginine/serine-rich protein-related (TAIR:AT1G79100.1)%3B Has 62425 Blast hits to 38843 proteins in 1486 species: Archae - 39%3B Bacteria - 6019%3B Metazoa - 27409%3B Fungi - 8585%3B Plants - 6560%3B Viruses - 1329%3B Other Eukaryotes - 12484 (source: NCBI BLink).; Dbxref=PMID:10740297, PMID:10593939, PMID:14576160, PMID:14675452, PMID:15270675, PMID:15496452, PMID:16520337, PMID:16807317, PMID:17435084, PMID:17556373, PMID:18402682, PMID:19403727, PMID:19435936, PMID:16895966, PMID:18414657, PMID:20699397, PMID:21935421, PMID:22274613, PMID:22617873, PMID:24832081, PMID:22563826, PMID:25268622, PMID:25366180, locus:2017948; locus_type=protein_coding
AT1G16610.7	chr1:005676278	0.0	C/5676278-5676319,5676429-5676495,5676761-5676877,5677017-5677082,5677154-5677376,5677466-5677634,5677725-5677805,5677892-5677938,5678127-5678209,5678293-5678364,5678487-5678686	AT1G16610.7 CDS AT1G16610 ID=AT1G16610.7; Parent=AT1G16610; Name=AT1G16610.7; Note=arginine/serine-rich 45; symbol=SR45; Alias=AtSR45, RNPS1; full_name=arginine/serine-rich 45; curator_summary=Encodes SR45%2C a member of the highly conserved family of serine/arginine-rich (SR) proteins%2C which play key roles in pre-mRNA splicing and other aspects of RNA metabolism. SR45 is a spliceosome protein%2C interacts with SR33 and the U1-70K protein of the U1 snRNP. Also involved in plant sugar response. sr45-1 mutation confers hypersensitivity to glucose during early seedling growth.; computational_description=arginine/serine-rich 45 (SR45)%3B FUNCTIONS IN: protein binding%2C RNA binding%3B INVOLVED IN: sugar mediated signaling pathway%2C nuclear mRNA splicing%2C via spliceosome%2C RNA splicing%3B LOCATED IN: nucleoplasm%2C nuclear speck%2C nucleolus%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: arginine/serine-rich protein-related (TAIR:AT1G79100.1)%3B Has 62425 Blast hits to 38843 proteins in 1486 species: Archae - 39%3B Bacteria - 6019%3B Metazoa - 27409%3B Fungi - 8585%3B Plants - 6560%3B Viruses - 1329%3B Other Eukaryotes - 12484 (source: NCBI BLink).; Dbxref=PMID:10740297, PMID:10593939, PMID:14576160, PMID:14675452, PMID:15270675, PMID:15496452, PMID:16520337, PMID:16807317, PMID:17435084, PMID:17556373, PMID:18402682, PMID:19403727, PMID:19435936, PMID:16895966, PMID:18414657, PMID:20699397, PMID:21935421, PMID:22274613, PMID:22617873, PMID:24832081, PMID:22563826, PMID:25268622, PMID:25366180, locus:2017948; locus_type=protein_coding
AT1TE18370	chr1:005679268	0.0	W/5679268-5679591,5680035-5680685,5680674-5681342,5681343-5681449	AT1TE18370 transposable_element AT1TE18370 ID=AT1TE18370; Name=AT1TE18370; Alias=TAG2
AT1G16620.1	chr1:005679819	0.0	W/5679819-5681188	AT1G16620.1 CDS AT1G16620 ID=AT1G16620.1; Parent=AT1G16620; Name=AT1G16620.1; index=1; computational_description=hAT-like transposase family (hobo/Ac/Tam3)%2C has a 5.7e-158 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana); Dbxref=locus:2824885; Note=transposable_element_gene; locus_type=transposable_element_gene
AT1TE18375	chr1:005681490	0.0	W/5681490-5681628	AT1TE18375 transposable_element AT1TE18375 ID=AT1TE18375; Name=AT1TE18375; Alias=TAG2
AT1TE18380	chr1:005681629	0.0	W/5681629-5681695	AT1TE18380 transposable_element AT1TE18380 ID=AT1TE18380; Name=AT1TE18380; Alias=TAG2
AT1TE18385	chr1:005681696	0.0	W/5681696-5681873	AT1TE18385 transposable_element AT1TE18385 ID=AT1TE18385; Name=AT1TE18385; Alias=TAG2
AT1G16630.1	chr1:005682212	0.0	C/5682212-5684749	AT1G16630.1 CDS AT1G16630 ID=AT1G16630.1; Parent=AT1G16630; Name=AT1G16630.1; Note=transmembrane protein; conf_class=1; computational_description=unknown protein%3B LOCATED IN: chloroplast%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G16270.1)%3B Has 10587 Blast hits to 5736 proteins in 617 species: Archae - 88%3B Bacteria - 963%3B Metazoa - 3686%3B Fungi - 820%3B Plants - 541%3B Viruses - 438%3B Other Eukaryotes - 4051 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14576160, PMID:17435084, PMID:20736450, locus:2017938; locus_type=protein_coding
AT1G16635.1	chr1:005685503	0.0	C/5685503-5686368	AT1G16635.1 ncRNA AT1G16635 ID=AT1G16635.1; Parent=AT1G16635; Name=AT1G16635.1; index=1; Dbxref=locus:6530298139; Note=other_RNA; locus_type=other_rna
AT1G05247.1	chr1:005686093	0.0	C/5686093-5686179	AT1G05247.1 snoRNA AT1G05247 ID=AT1G05247.1; Parent=AT1G05247; Name=AT1G05247.1; Alias=AtsnoR34; Dbxref=PMID:12520043, PMID:22820990; locus_type=small_nucleolar_rna
AT1G16640.1	chr1:005686763	0.0	W/5686763-5686828,5687195-5687533	AT1G16640.1 CDS AT1G16640 ID=AT1G16640.1; Parent=AT1G16640; Name=AT1G16640.1; Note=AP2/B3-like transcriptional factor family protein; conf_class=1; computational_description=AP2/B3-like transcriptional factor family protein%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 16 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340)%3B BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT3G06220.1)%3B Has 242 Blast hits to 231 proteins in 12 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 242%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15546358, PMID:16977453, PMID:25002525, locus:2017953; locus_type=protein_coding
AT1G16650.1	chr1:005687994	0.0	W/5687994-5688116,5688195-5688290,5688395-5688478,5688573-5688647,5689021-5689101,5689311-5689450,5689612-5689848,5689973-5690147,5690258-5690341,5690455-5690584,5690661-5690818,5690919-5691101	AT1G16650.1 CDS AT1G16650 ID=AT1G16650.1; Parent=AT1G16650; Name=AT1G16650.1; Note=S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; conf_class=1; computational_description=S-adenosyl-L-methionine-dependent methyltransferases superfamily protein%3B Has 486 Blast hits to 429 proteins in 154 species: Archae - 0%3B Bacteria - 55%3B Metazoa - 267%3B Fungi - 96%3B Plants - 28%3B Viruses - 0%3B Other Eukaryotes - 40 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:2017928; locus_type=protein_coding
AT1G16650.2	chr1:005687994	0.0	W/5687994-5688116,5688195-5688290,5688395-5688478,5688573-5688647,5689021-5689101,5689311-5689450,5689612-5689848,5689973-5690147,5690258-5690395	AT1G16650.2 CDS AT1G16650 ID=AT1G16650.2; Parent=AT1G16650; Name=AT1G16650.2; Note=S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; computational_description=S-adenosyl-L-methionine-dependent methyltransferases superfamily protein%3B Has 486 Blast hits to 429 proteins in 154 species: Archae - 0%3B Bacteria - 55%3B Metazoa - 267%3B Fungi - 96%3B Plants - 28%3B Viruses - 0%3B Other Eukaryotes - 40 (source: NCBI BLink).; Dbxref=locus:2017928; locus_type=protein_coding
AT1G16650.3	chr1:005687994	0.0	W/5687994-5688116,5688195-5688290,5688395-5688478,5688573-5688647,5688997-5689101,5689311-5689450,5689612-5689848,5689973-5690147,5690258-5690341,5690455-5690584,5690661-5690818,5690919-5691101	AT1G16650.3 CDS AT1G16650 ID=AT1G16650.3; Parent=AT1G16650; Name=AT1G16650.3; Note=S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; computational_description=S-adenosyl-L-methionine-dependent methyltransferases superfamily protein%3B Has 486 Blast hits to 429 proteins in 154 species: Archae - 0%3B Bacteria - 55%3B Metazoa - 267%3B Fungi - 96%3B Plants - 28%3B Viruses - 0%3B Other Eukaryotes - 40 (source: NCBI BLink).; Dbxref=locus:2017928; locus_type=protein_coding
AT1TE18410	chr1:005691740	0.0	W/5691740-5696671	AT1TE18410 transposable_element AT1TE18410 ID=AT1TE18410; Name=AT1TE18410; Alias=ATCOPIA89
AT1G16660.1	chr1:005692024	0.0	W/5692024-5696458	AT1G16660.1 CDS AT1G16660 ID=AT1G16660.1; Parent=AT1G16660; Name=AT1G16660.1; index=1; computational_description=copia-like retrotransposon family%2C has a 2.0e-268 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea); Dbxref=locus:2824900; Note=transposable_element_gene; locus_type=transposable_element_gene
AT1TE18415	chr1:005696672	0.0	W/5696672-5696699	AT1TE18415 transposable_element AT1TE18415 ID=AT1TE18415; Name=AT1TE18415; Alias=ATCOPIA89
AT1G16670.1	chr1:005697846	0.0	W/5697846-5697900,5698023-5698138,5698227-5698437,5698526-5698769,5698860-5699010,5699097-5699492	AT1G16670.1 CDS AT1G16670 ID=AT1G16670.1; Parent=AT1G16670; Name=AT1G16670.1; Note=Protein kinase superfamily protein; conf_class=2; computational_description=Protein kinase superfamily protein%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G09010.1)%3B Has 119178 Blast hits to 117668 proteins in 4361 species: Archae - 113%3B Bacteria - 13232%3B Metazoa - 43958%3B Fungi - 10262%3B Plants - 33662%3B Viruses - 406%3B Other Eukaryotes - 17545 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12972053, PMID:17142483, PMID:18650403, PMID:21477822, locus:2017923; locus_type=protein_coding
AT1G16680.1	chr1:005702930	0.0	W/5702930-5703250,5703405-5703534,5703672-5704168,5704251-5704331,5704433-5704537,5704633-5704746,5704848-5704931,5705010-5705081,5705277-5705537	AT1G16680.1 CDS AT1G16680 ID=AT1G16680.1; Parent=AT1G16680; Name=AT1G16680.1; Note=Chaperone DnaJ-domain superfamily protein; conf_class=2; computational_description=Chaperone DnaJ-domain superfamily protein%3B FUNCTIONS IN: unfolded protein binding%2C heat shock protein binding%3B INVOLVED IN: protein folding%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Molecular chaperone%2C heat shock protein%2C Hsp40%2C DnaJ (InterPro:IPR015609)%2C Heat shock protein DnaJ%2C N-terminal (InterPro:IPR001623)%2C Heat shock protein DnaJ (InterPro:IPR003095)%2C Heat shock protein DnaJ%2C conserved site (InterPro:IPR018253)%3B BEST Arabidopsis thaliana protein match is: Chaperone DnaJ-domain superfamily protein (TAIR:AT1G79030.1)%3B Has 18225 Blast hits to 18222 proteins in 3146 species: Archae - 124%3B Bacteria - 7724%3B Metazoa - 3097%3B Fungi - 1583%3B Plants - 1765%3B Viruses - 36%3B Other Eukaryotes - 3896 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2017973; locus_type=protein_coding
AT1G16690.1	chr1:005706458	0.0	W/5706458-5706616,5706706-5706838,5706915-5707017,5707379-5707502,5707820-5707885,5708010-5708048,5708150-5708230,5708333-5708380,5708475-5708525,5708640-5708708,5708811-5709047,5709162-5709371	AT1G16690.1 CDS AT1G16690 ID=AT1G16690.1; Parent=AT1G16690; Name=AT1G16690.1; Note=Enhancer of polycomb-like transcription factor protein; conf_class=2; computational_description=Enhancer of polycomb-like transcription factor protein%3B CONTAINS InterPro DOMAIN/s: Enhancer of polycomb-like (InterPro:IPR019542)%3B BEST Arabidopsis thaliana protein match is: Enhancer of polycomb-like transcription factor protein (TAIR:AT1G79020.1)%3B Has 400 Blast hits to 400 proteins in 158 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 185%3B Fungi - 95%3B Plants - 75%3B Viruses - 0%3B Other Eukaryotes - 45 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, locus:2017978; locus_type=protein_coding
AT1G16700.1	chr1:005710012	0.0	W/5710012-5710065,5710481-5710559,5710660-5710713,5710824-5710915,5710996-5711109,5711208-5711275,5711387-5711498,5711599-5711694	AT1G16700.1 CDS AT1G16700 ID=AT1G16700.1; Parent=AT1G16700; Name=AT1G16700.1; Note=Alpha-helical ferredoxin; conf_class=2; computational_description=Alpha-helical ferredoxin%3B FUNCTIONS IN: NADH dehydrogenase (ubiquinone) activity%2C metal ion binding%3B INVOLVED IN: oxidation reduction%3B LOCATED IN: mitochondrion%2C respiratory chain complex I%3B CONTAINS InterPro DOMAIN/s: 4Fe-4S binding domain (InterPro:IPR001450)%2C NADH-quinone oxidoreductase%2C chain I (InterPro:IPR010226)%2C 4Fe-4S ferredoxin%2C iron-sulphur binding%2C conserved site (InterPro:IPR017900)%2C 4Fe-4S ferredoxin%2C iron-sulpur binding domain (InterPro:IPR017896)%2C Alpha-helical ferredoxin (InterPro:IPR009051)%3B BEST Arabidopsis thaliana protein match is: Alpha-helical ferredoxin (TAIR:AT1G79010.1)%3B Has 11610 Blast hits to 10987 proteins in 2441 species: Archae - 1438%3B Bacteria - 7070%3B Metazoa - 154%3B Fungi - 106%3B Plants - 790%3B Viruses - 1%3B Other Eukaryotes - 2051 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11743115, PMID:12606038, PMID:12837548, PMID:14558660, PMID:14671022, PMID:16525893, PMID:18189341, PMID:21167537, locus:2015636; locus_type=protein_coding
AT1G16705.1	chr1:005712469	0.0	W/5712469-5712515,5712877-5712991,5713181-5713333,5713451-5713522	AT1G16705.1 CDS AT1G16705 ID=AT1G16705.1; Parent=AT1G16705; Name=AT1G16705.1; Note=p300/CBP acetyltransferase-related protein-like protein; conf_class=1; computational_description=p300/CBP acetyltransferase-related protein-related%3B BEST Arabidopsis thaliana protein match is: histone acetyltransferase of the CBP family 12 (TAIR:AT1G16710.2)%3B Has 37 Blast hits to 37 proteins in 7 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 37%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:505006124; locus_type=protein_coding
AT1G16705.2	chr1:005712469	0.0	W/5712469-5712515,5712877-5712991,5713181-5713333,5713448-5713522	AT1G16705.2 CDS AT1G16705 ID=AT1G16705.2; Parent=AT1G16705; Name=AT1G16705.2; Note=p300/CBP acetyltransferase-related protein-like protein; conf_class=2; computational_description=p300/CBP acetyltransferase-related protein-related%3B BEST Arabidopsis thaliana protein match is: histone acetyltransferase of the CBP family 12 (TAIR:AT1G16710.2)%3B Has 37 Blast hits to 37 proteins in 7 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 37%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:505006124; locus_type=protein_coding
AT1G16705.3	chr1:005712469	0.0	W/5712469-5712515,5712877-5712991,5713181-5713333,5713451-5713522	AT1G16705.3 CDS AT1G16705 ID=AT1G16705.3; Parent=AT1G16705; Name=AT1G16705.3; Note=p300/CBP acetyltransferase-related protein-like protein; Dbxref=locus:505006124; computational_description=p300/CBP acetyltransferase-related protein-related%3B BEST Arabidopsis thaliana protein match is: histone acetyltransferase of the CBP family 12 (TAIR:AT1G16710.2)%3B Has 37 Blast hits to 37 proteins in 7 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 37%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; locus_type=protein_coding
AT1G16710.10	chr1:005714692	0.0	W/5714692-5714933,5715174-5715288,5715376-5715637,5715724-5716110,5716189-5716316,5716422-5718023,5718146-5718442,5718537-5718815,5718976-5719104,5719217-5719417,5719505-5719647,5719736-5720048,5720163-5720302,5720461-5720539,5720653-5721045,5721229-5721446,5721668-5721782	AT1G16710.10 CDS AT1G16710 ID=AT1G16710.10; Parent=AT1G16710; Name=AT1G16710.10; Note=histone acetyltransferase of the CBP family 12; symbol=HAC12; full_name=histone acetyltransferase of the CBP family 12; curator_summary=Encodes an enzyme with histone acetyltransferase activity that can use both H3 and H4 histones as substrates. No single prior lysine acetylation is sufficient to block HAC12 acetylation of the H3 or H4 peptides%2C suggesting that HAC12 can acetylate any of several lysines present in the peptides.; computational_description=histone acetyltransferase of the CBP family 12 (HAC12)%3B FUNCTIONS IN: histone acetyltransferase activity%2C transcription cofactor activity%3B INVOLVED IN: flower development%2C regulation of transcription%2C DNA-dependent%2C protein amino acid acetylation%3B LOCATED IN: nucleus%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Histone H3-K56 acetyltransferase%2C RTT109 (InterPro:IPR013178)%2C Zinc finger%2C PHD-type%2C conserved site (InterPro:IPR019786)%2C Zinc finger%2C TAZ-type (InterPro:IPR000197)%2C Zinc finger%2C PHD-type (InterPro:IPR001965)%2C Zinc finger%2C ZZ-type (InterPro:IPR000433)%3B BEST Arabidopsis thaliana protein match is: histone acetyltransferase of the CBP family 1 (TAIR:AT1G79000.1)%3B Has 5603 Blast hits to 4159 proteins in 302 species: Archae - 0%3B Bacteria - 235%3B Metazoa - 1739%3B Fungi - 482%3B Plants - 447%3B Viruses - 18%3B Other Eukaryotes - 2682 (source: NCBI BLink).; Dbxref=PMID:12466527, PMID:16489130, PMID:17144897, PMID:17877703, PMID:24614176, locus:2015676; locus_type=protein_coding
AT1G16710.1	chr1:005714692	0.0	W/5714692-5714933,5715174-5715288,5715376-5715637,5715724-5716316,5716422-5718023,5718146-5718442,5718537-5718815,5718976-5719104,5719217-5719417,5719505-5719647,5719736-5720048,5720163-5720302,5720461-5720539,5720653-5721045,5721229-5721446,5721668-5721782	AT1G16710.1 CDS AT1G16710 ID=AT1G16710.1; Parent=AT1G16710; Name=AT1G16710.1; Note=histone acetyltransferase of the CBP family 12; curator_summary=Encodes an enzyme with histone acetyltransferase activity that can use both H3 and H4 histones as substrates. No single prior lysine acetylation is sufficient to block HAC12 acetylation of the H3 or H4 peptides%2C suggesting that HAC12 can acetylate any of several lysines present in the peptides.; conf_class=4; symbol=HAC12; full_name=histone acetyltransferase of the CBP family 12; computational_description=histone acetyltransferase of the CBP family 12 (HAC12)%3B FUNCTIONS IN: histone acetyltransferase activity%2C transcription cofactor activity%3B INVOLVED IN: flower development%2C regulation of transcription%2C DNA-dependent%2C protein amino acid acetylation%3B LOCATED IN: nucleus%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Histone H3-K56 acetyltransferase%2C RTT109 (InterPro:IPR013178)%2C Zinc finger%2C PHD-type%2C conserved site (InterPro:IPR019786)%2C Zinc finger%2C TAZ-type (InterPro:IPR000197)%2C Zinc finger%2C PHD-type (InterPro:IPR001965)%2C Zinc finger%2C ZZ-type (InterPro:IPR000433)%3B BEST Arabidopsis thaliana protein match is: histone acetyltransferase of the CBP family 1 (TAIR:AT1G79000.1)%3B Has 5603 Blast hits to 4159 proteins in 302 species: Archae - 0%3B Bacteria - 235%3B Metazoa - 1739%3B Fungi - 482%3B Plants - 447%3B Viruses - 18%3B Other Eukaryotes - 2682 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:12466527, PMID:16489130, PMID:17144897, PMID:17877703, PMID:24614176, locus:2015676; locus_type=protein_coding
AT1G16710.2	chr1:005714692	0.0	W/5714692-5714933,5715174-5715288,5715376-5715651,5715747-5716110,5716189-5716316,5716422-5718023,5718146-5718442,5718537-5718815,5718976-5719104,5719217-5719417,5719505-5719647,5719736-5720048,5720163-5720302,5720461-5720539,5720653-5721045,5721229-5721446,5721668-5721782	AT1G16710.2 CDS AT1G16710 ID=AT1G16710.2; Parent=AT1G16710; Name=AT1G16710.2; Note=histone acetyltransferase of the CBP family 12; curator_summary=Encodes an enzyme with histone acetyltransferase activity that can use both H3 and H4 histones as substrates. No single prior lysine acetylation is sufficient to block HAC12 acetylation of the H3 or H4 peptides%2C suggesting that HAC12 can acetylate any of several lysines present in the peptides.; conf_class=6; symbol=HAC12; full_name=histone acetyltransferase of the CBP family 12; computational_description=histone acetyltransferase of the CBP family 12 (HAC12)%3B FUNCTIONS IN: histone acetyltransferase activity%2C transcription cofactor activity%3B INVOLVED IN: flower development%2C regulation of transcription%2C DNA-dependent%2C protein amino acid acetylation%3B LOCATED IN: nucleus%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Histone H3-K56 acetyltransferase%2C RTT109 (InterPro:IPR013178)%2C Zinc finger%2C PHD-type%2C conserved site (InterPro:IPR019786)%2C Zinc finger%2C TAZ-type (InterPro:IPR000197)%2C Zinc finger%2C PHD-type (InterPro:IPR001965)%2C Zinc finger%2C ZZ-type (InterPro:IPR000433)%3B BEST Arabidopsis thaliana protein match is: histone acetyltransferase of the CBP family 1 (TAIR:AT1G79000.1)%3B Has 5603 Blast hits to 4159 proteins in 302 species: Archae - 0%3B Bacteria - 235%3B Metazoa - 1739%3B Fungi - 482%3B Plants - 447%3B Viruses - 18%3B Other Eukaryotes - 2682 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:12466527, PMID:16489130, PMID:17144897, PMID:17877703, PMID:24614176, locus:2015676; locus_type=protein_coding
AT1G16710.3	chr1:005714692	0.0	W/5714692-5714933,5715174-5715288,5715376-5715637,5715724-5716110,5716189-5716316,5716422-5718023,5718146-5718442,5718537-5718815,5718976-5719104,5719217-5719417,5719505-5719647,5719736-5720048,5720163-5720302,5720461-5720539,5720653-5721045,5721229-5721446,5721668-5721782	AT1G16710.3 CDS AT1G16710 ID=AT1G16710.3; Parent=AT1G16710; Name=AT1G16710.3; Note=histone acetyltransferase of the CBP family 12; symbol=HAC12; full_name=histone acetyltransferase of the CBP family 12; curator_summary=Encodes an enzyme with histone acetyltransferase activity that can use both H3 and H4 histones as substrates. No single prior lysine acetylation is sufficient to block HAC12 acetylation of the H3 or H4 peptides%2C suggesting that HAC12 can acetylate any of several lysines present in the peptides.; computational_description=histone acetyltransferase of the CBP family 12 (HAC12)%3B FUNCTIONS IN: histone acetyltransferase activity%2C transcription cofactor activity%3B INVOLVED IN: flower development%2C regulation of transcription%2C DNA-dependent%2C protein amino acid acetylation%3B LOCATED IN: nucleus%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Histone H3-K56 acetyltransferase%2C RTT109 (InterPro:IPR013178)%2C Zinc finger%2C PHD-type%2C conserved site (InterPro:IPR019786)%2C Zinc finger%2C TAZ-type (InterPro:IPR000197)%2C Zinc finger%2C PHD-type (InterPro:IPR001965)%2C Zinc finger%2C ZZ-type (InterPro:IPR000433)%3B BEST Arabidopsis thaliana protein match is: histone acetyltransferase of the CBP family 1 (TAIR:AT1G79000.1)%3B Has 5603 Blast hits to 4159 proteins in 302 species: Archae - 0%3B Bacteria - 235%3B Metazoa - 1739%3B Fungi - 482%3B Plants - 447%3B Viruses - 18%3B Other Eukaryotes - 2682 (source: NCBI BLink).; Dbxref=PMID:12466527, PMID:16489130, PMID:17144897, PMID:17877703, PMID:24614176, locus:2015676; locus_type=protein_coding
AT1G16710.4	chr1:005714692	0.0	W/5714692-5714933,5715174-5715288,5715376-5715520,5715724-5716110,5716189-5716316,5716422-5718023,5718146-5718442,5718537-5718815,5718976-5719104,5719217-5719417,5719505-5719647,5719736-5720048,5720163-5720302,5720461-5720539,5720653-5721045,5721229-5721446,5721668-5721782	AT1G16710.4 CDS AT1G16710 ID=AT1G16710.4; Parent=AT1G16710; Name=AT1G16710.4; Note=histone acetyltransferase of the CBP family 12; symbol=HAC12; full_name=histone acetyltransferase of the CBP family 12; curator_summary=Encodes an enzyme with histone acetyltransferase activity that can use both H3 and H4 histones as substrates. No single prior lysine acetylation is sufficient to block HAC12 acetylation of the H3 or H4 peptides%2C suggesting that HAC12 can acetylate any of several lysines present in the peptides.; computational_description=histone acetyltransferase of the CBP family 12 (HAC12)%3B FUNCTIONS IN: histone acetyltransferase activity%2C transcription cofactor activity%3B INVOLVED IN: flower development%2C regulation of transcription%2C DNA-dependent%2C protein amino acid acetylation%3B LOCATED IN: nucleus%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Histone H3-K56 acetyltransferase%2C RTT109 (InterPro:IPR013178)%2C Zinc finger%2C PHD-type%2C conserved site (InterPro:IPR019786)%2C Zinc finger%2C TAZ-type (InterPro:IPR000197)%2C Zinc finger%2C PHD-type (InterPro:IPR001965)%2C Zinc finger%2C ZZ-type (InterPro:IPR000433)%3B BEST Arabidopsis thaliana protein match is: histone acetyltransferase of the CBP family 1 (TAIR:AT1G79000.1)%3B Has 5603 Blast hits to 4159 proteins in 302 species: Archae - 0%3B Bacteria - 235%3B Metazoa - 1739%3B Fungi - 482%3B Plants - 447%3B Viruses - 18%3B Other Eukaryotes - 2682 (source: NCBI BLink).; Dbxref=PMID:12466527, PMID:16489130, PMID:17144897, PMID:17877703, PMID:24614176, locus:2015676; locus_type=protein_coding
AT1G16710.5	chr1:005714692	0.0	W/5714692-5714933,5715174-5715288,5715376-5715520,5715724-5716110,5716189-5716316,5716422-5718023,5718146-5718442,5718537-5718815,5718976-5719104,5719217-5719417,5719505-5719647,5719736-5720048,5720163-5720302,5720461-5720539,5720653-5721045,5721229-5721446,5721668-5721782	AT1G16710.5 CDS AT1G16710 ID=AT1G16710.5; Parent=AT1G16710; Name=AT1G16710.5; Note=histone acetyltransferase of the CBP family 12; symbol=HAC12; full_name=histone acetyltransferase of the CBP family 12; curator_summary=Encodes an enzyme with histone acetyltransferase activity that can use both H3 and H4 histones as substrates. No single prior lysine acetylation is sufficient to block HAC12 acetylation of the H3 or H4 peptides%2C suggesting that HAC12 can acetylate any of several lysines present in the peptides.; computational_description=histone acetyltransferase of the CBP family 12 (HAC12)%3B FUNCTIONS IN: histone acetyltransferase activity%2C transcription cofactor activity%3B INVOLVED IN: flower development%2C regulation of transcription%2C DNA-dependent%2C protein amino acid acetylation%3B LOCATED IN: nucleus%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Histone H3-K56 acetyltransferase%2C RTT109 (InterPro:IPR013178)%2C Zinc finger%2C PHD-type%2C conserved site (InterPro:IPR019786)%2C Zinc finger%2C TAZ-type (InterPro:IPR000197)%2C Zinc finger%2C PHD-type (InterPro:IPR001965)%2C Zinc finger%2C ZZ-type (InterPro:IPR000433)%3B BEST Arabidopsis thaliana protein match is: histone acetyltransferase of the CBP family 1 (TAIR:AT1G79000.1)%3B Has 5603 Blast hits to 4159 proteins in 302 species: Archae - 0%3B Bacteria - 235%3B Metazoa - 1739%3B Fungi - 482%3B Plants - 447%3B Viruses - 18%3B Other Eukaryotes - 2682 (source: NCBI BLink).; Dbxref=PMID:12466527, PMID:16489130, PMID:17144897, PMID:17877703, PMID:24614176, locus:2015676; locus_type=protein_coding
AT1G16710.6	chr1:005714692	0.0	W/5714692-5714933,5715174-5715288,5715376-5715520,5715724-5716110,5716189-5716316,5716422-5718023,5718146-5718442,5718537-5718815,5718976-5719104,5719217-5719417,5719505-5719647,5719736-5720048,5720163-5720302,5720461-5720539,5720653-5721045,5721229-5721446,5721668-5721782	AT1G16710.6 CDS AT1G16710 ID=AT1G16710.6; Parent=AT1G16710; Name=AT1G16710.6; Note=histone acetyltransferase of the CBP family 12; symbol=HAC12; full_name=histone acetyltransferase of the CBP family 12; curator_summary=Encodes an enzyme with histone acetyltransferase activity that can use both H3 and H4 histones as substrates. No single prior lysine acetylation is sufficient to block HAC12 acetylation of the H3 or H4 peptides%2C suggesting that HAC12 can acetylate any of several lysines present in the peptides.; computational_description=histone acetyltransferase of the CBP family 12 (HAC12)%3B FUNCTIONS IN: histone acetyltransferase activity%2C transcription cofactor activity%3B INVOLVED IN: flower development%2C regulation of transcription%2C DNA-dependent%2C protein amino acid acetylation%3B LOCATED IN: nucleus%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Histone H3-K56 acetyltransferase%2C RTT109 (InterPro:IPR013178)%2C Zinc finger%2C PHD-type%2C conserved site (InterPro:IPR019786)%2C Zinc finger%2C TAZ-type (InterPro:IPR000197)%2C Zinc finger%2C PHD-type (InterPro:IPR001965)%2C Zinc finger%2C ZZ-type (InterPro:IPR000433)%3B BEST Arabidopsis thaliana protein match is: histone acetyltransferase of the CBP family 1 (TAIR:AT1G79000.1)%3B Has 5603 Blast hits to 4159 proteins in 302 species: Archae - 0%3B Bacteria - 235%3B Metazoa - 1739%3B Fungi - 482%3B Plants - 447%3B Viruses - 18%3B Other Eukaryotes - 2682 (source: NCBI BLink).; Dbxref=PMID:12466527, PMID:16489130, PMID:17144897, PMID:17877703, PMID:24614176, locus:2015676; locus_type=protein_coding
AT1G16710.7	chr1:005714692	0.0	W/5714692-5714933,5715174-5715288,5715376-5715637,5715724-5716110,5716189-5716316,5716422-5718023,5718146-5718442,5718537-5718815,5718976-5719104,5719217-5719417,5719505-5719647,5719736-5720048,5720163-5720302,5720461-5720539,5720653-5721045,5721229-5721446,5721668-5721782	AT1G16710.7 CDS AT1G16710 ID=AT1G16710.7; Parent=AT1G16710; Name=AT1G16710.7; Note=histone acetyltransferase of the CBP family 12; symbol=HAC12; full_name=histone acetyltransferase of the CBP family 12; curator_summary=Encodes an enzyme with histone acetyltransferase activity that can use both H3 and H4 histones as substrates. No single prior lysine acetylation is sufficient to block HAC12 acetylation of the H3 or H4 peptides%2C suggesting that HAC12 can acetylate any of several lysines present in the peptides.; computational_description=histone acetyltransferase of the CBP family 12 (HAC12)%3B FUNCTIONS IN: histone acetyltransferase activity%2C transcription cofactor activity%3B INVOLVED IN: flower development%2C regulation of transcription%2C DNA-dependent%2C protein amino acid acetylation%3B LOCATED IN: nucleus%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Histone H3-K56 acetyltransferase%2C RTT109 (InterPro:IPR013178)%2C Zinc finger%2C PHD-type%2C conserved site (InterPro:IPR019786)%2C Zinc finger%2C TAZ-type (InterPro:IPR000197)%2C Zinc finger%2C PHD-type (InterPro:IPR001965)%2C Zinc finger%2C ZZ-type (InterPro:IPR000433)%3B BEST Arabidopsis thaliana protein match is: histone acetyltransferase of the CBP family 1 (TAIR:AT1G79000.1)%3B Has 5603 Blast hits to 4159 proteins in 302 species: Archae - 0%3B Bacteria - 235%3B Metazoa - 1739%3B Fungi - 482%3B Plants - 447%3B Viruses - 18%3B Other Eukaryotes - 2682 (source: NCBI BLink).; Dbxref=PMID:12466527, PMID:16489130, PMID:17144897, PMID:17877703, PMID:24614176, locus:2015676; locus_type=protein_coding
AT1G16710.8	chr1:005714692	0.0	W/5714692-5714933,5715174-5715288,5715376-5715637,5715724-5716110,5716189-5716316,5716422-5718023,5718146-5718442,5718537-5718815,5718976-5719104,5719217-5719417,5719505-5719647,5719736-5720048,5720163-5720302,5720461-5720539,5720653-5721045,5721229-5721446,5721668-5721782	AT1G16710.8 CDS AT1G16710 ID=AT1G16710.8; Parent=AT1G16710; Name=AT1G16710.8; Note=histone acetyltransferase of the CBP family 12; symbol=HAC12; full_name=histone acetyltransferase of the CBP family 12; curator_summary=Encodes an enzyme with histone acetyltransferase activity that can use both H3 and H4 histones as substrates. No single prior lysine acetylation is sufficient to block HAC12 acetylation of the H3 or H4 peptides%2C suggesting that HAC12 can acetylate any of several lysines present in the peptides.; computational_description=histone acetyltransferase of the CBP family 12 (HAC12)%3B FUNCTIONS IN: histone acetyltransferase activity%2C transcription cofactor activity%3B INVOLVED IN: flower development%2C regulation of transcription%2C DNA-dependent%2C protein amino acid acetylation%3B LOCATED IN: nucleus%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Histone H3-K56 acetyltransferase%2C RTT109 (InterPro:IPR013178)%2C Zinc finger%2C PHD-type%2C conserved site (InterPro:IPR019786)%2C Zinc finger%2C TAZ-type (InterPro:IPR000197)%2C Zinc finger%2C PHD-type (InterPro:IPR001965)%2C Zinc finger%2C ZZ-type (InterPro:IPR000433)%3B BEST Arabidopsis thaliana protein match is: histone acetyltransferase of the CBP family 1 (TAIR:AT1G79000.1)%3B Has 5603 Blast hits to 4159 proteins in 302 species: Archae - 0%3B Bacteria - 235%3B Metazoa - 1739%3B Fungi - 482%3B Plants - 447%3B Viruses - 18%3B Other Eukaryotes - 2682 (source: NCBI BLink).; Dbxref=PMID:12466527, PMID:16489130, PMID:17144897, PMID:17877703, PMID:24614176, locus:2015676; locus_type=protein_coding
AT1G16710.9	chr1:005714692	0.0	W/5714692-5714933,5715174-5715288,5715376-5715637,5715724-5716110,5716189-5716316,5716422-5718023,5718146-5718442,5718537-5718815,5718976-5719104,5719217-5719417,5719505-5719647,5719736-5720048,5720163-5720302,5720461-5720635	AT1G16710.9 CDS AT1G16710 ID=AT1G16710.9; Parent=AT1G16710; Name=AT1G16710.9; Note=histone acetyltransferase of the CBP family 12; symbol=HAC12; full_name=histone acetyltransferase of the CBP family 12; curator_summary=Encodes an enzyme with histone acetyltransferase activity that can use both H3 and H4 histones as substrates. No single prior lysine acetylation is sufficient to block HAC12 acetylation of the H3 or H4 peptides%2C suggesting that HAC12 can acetylate any of several lysines present in the peptides.; computational_description=histone acetyltransferase of the CBP family 12 (HAC12)%3B FUNCTIONS IN: histone acetyltransferase activity%2C transcription cofactor activity%3B INVOLVED IN: flower development%2C regulation of transcription%2C DNA-dependent%2C protein amino acid acetylation%3B LOCATED IN: nucleus%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Histone H3-K56 acetyltransferase%2C RTT109 (InterPro:IPR013178)%2C Zinc finger%2C PHD-type%2C conserved site (InterPro:IPR019786)%2C Zinc finger%2C TAZ-type (InterPro:IPR000197)%2C Zinc finger%2C PHD-type (InterPro:IPR001965)%2C Zinc finger%2C ZZ-type (InterPro:IPR000433)%3B BEST Arabidopsis thaliana protein match is: histone acetyltransferase of the CBP family 1 (TAIR:AT1G79000.1)%3B Has 5603 Blast hits to 4159 proteins in 302 species: Archae - 0%3B Bacteria - 235%3B Metazoa - 1739%3B Fungi - 482%3B Plants - 447%3B Viruses - 18%3B Other Eukaryotes - 2682 (source: NCBI BLink).; Dbxref=PMID:12466527, PMID:16489130, PMID:17144897, PMID:17877703, PMID:24614176, locus:2015676; locus_type=protein_coding
AT1G05253.1	chr1:005723094	0.0	C/5723094-5723466	AT1G05253.1 antisense_lncRNA AT1G05253 ID=AT1G05253.1; Parent=AT1G05253; Name=AT1G05253.1; description=Natural antisense transcript overlaps with AT1G16720; Note=Natural antisense transcript overlaps with AT1G16720; locus_type=antisense_long_noncoding_rna
AT1G16720.1	chr1:005723161	0.0	W/5723161-5723730,5723824-5724036,5724139-5724343,5724441-5724516,5724677-5724812,5724897-5725001,5725126-5725206,5725309-5725398,5725537-5725602,5725669-5725725,5725825-5725902,5726051-5726098,5726177-5726248	AT1G16720.1 CDS AT1G16720 ID=AT1G16720.1; Parent=AT1G16720; Name=AT1G16720.1; Note=high chlorophyll fluorescence phenotype 173; curator_summary=Encodes HCF173%2C a protein with weak similarities to the superfamily of the short-chain dehydrogenases/reductases. HCF173 is involved in the initiation of translation of the psbA mRNA. Mutants shows a high chlorophyll fluorescence phenotype (hcf) and are severely affected in the accumulation of PSII subunits. The protein HCF173 is localized in the chloroplast%2C where it is mainly associated with the membrane system and is part of a higher molecular weight complex with psbA mRNA as a component of this complex.; conf_class=2; symbol=HCF173; full_name=high chlorophyll fluorescence phenotype 173; computational_description=high chlorophyll fluorescence phenotype 173 (HCF173)%3B FUNCTIONS IN: binding%2C catalytic activity%3B INVOLVED IN: photosystem II assembly%2C translational initiation%3B LOCATED IN: chloroplast%2C chloroplast envelope%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040)%2C NADH:ubiquinone oxidoreductase intermediate-associated protein 30 (InterPro:IPR013857)%2C NmrA-like (InterPro:IPR008030)%3B BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT4G18810.2)%3B Has 1950 Blast hits to 1792 proteins in 453 species: Archae - 27%3B Bacteria - 1263%3B Metazoa - 9%3B Fungi - 6%3B Plants - 464%3B Viruses - 0%3B Other Eukaryotes - 181 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:17435084, PMID:23027666, PMID:23148892, locus:2015651; locus_type=protein_coding
AT1G16720.2	chr1:005723161	0.0	W/5723161-5723730,5723824-5724036,5724139-5724343,5724441-5724516,5724677-5724812,5724897-5725001,5725126-5725206,5725309-5725398,5725537-5725602,5725669-5725902,5726051-5726098,5726177-5726248	AT1G16720.2 CDS AT1G16720 ID=AT1G16720.2; Parent=AT1G16720; Name=AT1G16720.2; Note=high chlorophyll fluorescence phenotype 173; symbol=HCF173; full_name=high chlorophyll fluorescence phenotype 173; curator_summary=Encodes HCF173%2C a protein with weak similarities to the superfamily of the short-chain dehydrogenases/reductases. HCF173 is involved in the initiation of translation of the psbA mRNA. Mutants shows a high chlorophyll fluorescence phenotype (hcf) and are severely affected in the accumulation of PSII subunits. The protein HCF173 is localized in the chloroplast%2C where it is mainly associated with the membrane system and is part of a higher molecular weight complex with psbA mRNA as a component of this complex.; computational_description=high chlorophyll fluorescence phenotype 173 (HCF173)%3B FUNCTIONS IN: binding%2C catalytic activity%3B INVOLVED IN: photosystem II assembly%2C translational initiation%3B LOCATED IN: chloroplast%2C chloroplast envelope%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040)%2C NADH:ubiquinone oxidoreductase intermediate-associated protein 30 (InterPro:IPR013857)%2C NmrA-like (InterPro:IPR008030)%3B BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT4G18810.2)%3B Has 1950 Blast hits to 1792 proteins in 453 species: Archae - 27%3B Bacteria - 1263%3B Metazoa - 9%3B Fungi - 6%3B Plants - 464%3B Viruses - 0%3B Other Eukaryotes - 181 (source: NCBI BLink).; Dbxref=PMID:14576160, PMID:17435084, PMID:23027666, PMID:23148892, locus:2015651; locus_type=protein_coding
AT1G16720.3	chr1:005723161	0.0	W/5723161-5723730,5723824-5724036,5724139-5724343,5724441-5724516,5724677-5724812,5724897-5725001,5725126-5725206,5725309-5725398,5725537-5725602,5725669-5725725,5725825-5725920	AT1G16720.3 CDS AT1G16720 ID=AT1G16720.3; Parent=AT1G16720; Name=AT1G16720.3; Note=high chlorophyll fluorescence phenotype 173; symbol=HCF173; full_name=high chlorophyll fluorescence phenotype 173; curator_summary=Encodes HCF173%2C a protein with weak similarities to the superfamily of the short-chain dehydrogenases/reductases. HCF173 is involved in the initiation of translation of the psbA mRNA. Mutants shows a high chlorophyll fluorescence phenotype (hcf) and are severely affected in the accumulation of PSII subunits. The protein HCF173 is localized in the chloroplast%2C where it is mainly associated with the membrane system and is part of a higher molecular weight complex with psbA mRNA as a component of this complex.; computational_description=high chlorophyll fluorescence phenotype 173 (HCF173)%3B FUNCTIONS IN: binding%2C catalytic activity%3B INVOLVED IN: photosystem II assembly%2C translational initiation%3B LOCATED IN: chloroplast%2C chloroplast envelope%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040)%2C NADH:ubiquinone oxidoreductase intermediate-associated protein 30 (InterPro:IPR013857)%2C NmrA-like (InterPro:IPR008030)%3B BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT4G18810.2)%3B Has 1950 Blast hits to 1792 proteins in 453 species: Archae - 27%3B Bacteria - 1263%3B Metazoa - 9%3B Fungi - 6%3B Plants - 464%3B Viruses - 0%3B Other Eukaryotes - 181 (source: NCBI BLink).; Dbxref=PMID:14576160, PMID:17435084, PMID:23027666, PMID:23148892, locus:2015651; locus_type=protein_coding
AT1G05257.1	chr1:005726556	0.0	W/5726556-5726671	AT1G05257.1 antisense_RNA AT1G05257 ID=AT1G05257.1; Parent=AT1G05257; Name=AT1G05257.1; description=Natural antisense transcript overlaps with AT1G16730; Note=Natural antisense transcript overlaps with AT1G16730; locus_type=antisense_rna
AT1G16730.1	chr1:005726617	0.0	C/5726617-5726760,5726848-5727312	AT1G16730.1 CDS AT1G16730 ID=AT1G16730.1; Parent=AT1G16730; Name=AT1G16730.1; Note=hypothetical protein; conf_class=2; symbol=UP6; full_name=unknown protein 6; computational_description=unknown protein 6 (UP6)%3B Has 17 Blast hits to 17 proteins in 7 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 15%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:19329564, PMID:20009535, PMID:21838868, PMID:25253886, locus:2015621; locus_type=protein_coding
AT1G16740.1	chr1:005727773	0.0	W/5727773-5727958,5728756-5728950	AT1G16740.1 CDS AT1G16740 ID=AT1G16740.1; Parent=AT1G16740; Name=AT1G16740.1; Note=Ribosomal protein L20; conf_class=1; computational_description=Ribosomal protein L20%3B FUNCTIONS IN: structural constituent of ribosome%2C rRNA binding%3B INVOLVED IN: translation%2C ribosome biogenesis%3B LOCATED IN: ribosome%2C intracellular%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L20 (InterPro:IPR005813)%3B BEST Arabidopsis thaliana protein match is: ribosomal protein L20 (TAIR:ATCG00660.1)%3B Has 8162 Blast hits to 8162 proteins in 2777 species: Archae - 0%3B Bacteria - 5193%3B Metazoa - 126%3B Fungi - 0%3B Plants - 621%3B Viruses - 0%3B Other Eukaryotes - 2222 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16368778, PMID:18315867, locus:2015661; locus_type=protein_coding
AT1G16750.1	chr1:005729221	0.0	C/5729221-5729532,5729613-5729732,5729812-5729904,5729996-5730055,5730136-5730235,5730317-5730804,5730884-5731033,5731131-5731247,5731338-5731424,5731528-5731558,5731658-5731689	AT1G16750.1 CDS AT1G16750 ID=AT1G16750.1; Parent=AT1G16750; Name=AT1G16750.1; Note=GPI-anchored adhesin-like protein%2C putative (Protein of unknown function%2C DUF547); conf_class=2; computational_description=Protein of unknown function%2C DUF547%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function%2C DUF547 (TAIR:AT3G13000.2)%3B Has 699 Blast hits to 674 proteins in 105 species: Archae - 2%3B Bacteria - 80%3B Metazoa - 34%3B Fungi - 2%3B Plants - 533%3B Viruses - 0%3B Other Eukaryotes - 48 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2015666; locus_type=protein_coding
AT1G16750.2	chr1:005729758	0.0	C/5729758-5729904,5729996-5730055,5730136-5730235,5730317-5730804,5730884-5731033,5731131-5731247,5731338-5731424,5731528-5731558,5731658-5731689	AT1G16750.2 CDS AT1G16750 ID=AT1G16750.2; Parent=AT1G16750; Name=AT1G16750.2; Note=GPI-anchored adhesin-like protein%2C putative (Protein of unknown function%2C DUF547); computational_description=Protein of unknown function%2C DUF547%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function%2C DUF547 (TAIR:AT3G13000.2)%3B Has 699 Blast hits to 674 proteins in 105 species: Archae - 2%3B Bacteria - 80%3B Metazoa - 34%3B Fungi - 2%3B Plants - 533%3B Viruses - 0%3B Other Eukaryotes - 48 (source: NCBI BLink).; Dbxref=locus:2015666; locus_type=protein_coding
AT1G05263.1	chr1:005733333	0.0	C/5733333-5733554	AT1G05263.1 lnc_RNA AT1G05263 ID=AT1G05263.1; Parent=AT1G05263; Name=AT1G05263.1; locus_type=long_noncoding_rna
AT1G16760.1	chr1:005734234	0.0	W/5734234-5734411,5734542-5734633,5734728-5734849,5734949-5735136,5735231-5735285,5735364-5735694,5735791-5735892,5735975-5736385,5736510-5737307	AT1G16760.1 CDS AT1G16760 ID=AT1G16760.1; Parent=AT1G16760; Name=AT1G16760.1; Note=kinase with adenine nucleotide alpha hydrolases-like domain-containing protein; conf_class=6; computational_description=Protein kinase protein with adenine nucleotide alpha hydrolases-like domain%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%2C response to stress%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: male gametophyte%2C flower%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%3B CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%3B BEST Arabidopsis thaliana protein match is: Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (TAIR:AT1G78940.2)%3B Has 113227 Blast hits to 112001 proteins in 4378 species: Archae - 122%3B Bacteria - 13420%3B Metazoa - 41738%3B Fungi - 9261%3B Plants - 32650%3B Viruses - 282%3B Other Eukaryotes - 15754 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:12644671, PMID:18775970, locus:2015656; locus_type=protein_coding
AT1G16760.2	chr1:005734234	0.0	W/5734234-5734411,5734542-5734633,5734728-5734849,5734949-5735136,5735231-5735285,5735364-5735694,5735791-5735892,5735975-5736385,5736510-5737262,5737345-5737401	AT1G16760.2 CDS AT1G16760 ID=AT1G16760.2; Parent=AT1G16760; Name=AT1G16760.2; Note=kinase with adenine nucleotide alpha hydrolases-like domain-containing protein; computational_description=Protein kinase protein with adenine nucleotide alpha hydrolases-like domain%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%2C response to stress%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: male gametophyte%2C flower%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%3B CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%3B BEST Arabidopsis thaliana protein match is: Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (TAIR:AT1G78940.2)%3B Has 113227 Blast hits to 112001 proteins in 4378 species: Archae - 122%3B Bacteria - 13420%3B Metazoa - 41738%3B Fungi - 9261%3B Plants - 32650%3B Viruses - 282%3B Other Eukaryotes - 15754 (source: NCBI BLink).; Dbxref=PMID:12644671, PMID:18775970, locus:2015656; locus_type=protein_coding
AT1G16770.1	chr1:005737900	0.0	W/5737900-5737953,5738045-5738284,5738364-5738514,5738581-5739110	AT1G16770.1 CDS AT1G16770 ID=AT1G16770.1; Parent=AT1G16770; Name=AT1G16770.1; Note=hypothetical protein; conf_class=1; computational_description=unknown protein%3B Has 109 Blast hits to 109 proteins in 52 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 0%3B Fungi - 71%3B Plants - 32%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:2015641; locus_type=protein_coding
AT1G16770.2	chr1:005738135	0.0	W/5738135-5738284,5738364-5738514,5738581-5739110	AT1G16770.2 CDS AT1G16770 ID=AT1G16770.2; Parent=AT1G16770; Name=AT1G16770.2; Note=hypothetical protein; conf_class=1; computational_description=unknown protein%3B Has 109 Blast hits to 109 proteins in 52 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 0%3B Fungi - 71%3B Plants - 32%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:2015641; locus_type=protein_coding
AT1G16770.3	chr1:005738406	0.0	W/5738406-5738514,5738581-5739110	AT1G16770.3 CDS AT1G16770 ID=AT1G16770.3; Parent=AT1G16770; Name=AT1G16770.3; Note=hypothetical protein; computational_description=unknown protein%3B Has 109 Blast hits to 109 proteins in 52 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 0%3B Fungi - 71%3B Plants - 32%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; Dbxref=locus:2015641; locus_type=protein_coding
AT1G16780.1	chr1:005739468	0.0	C/5739468-5739567,5739697-5739916,5740003-5740114,5740195-5740350,5740441-5740605,5740689-5741126,5741310-5741497,5741672-5741792,5741888-5742060,5742435-5742567,5742637-5742784,5742870-5743021,5743126-5743329,5743471-5743569	AT1G16780.1 CDS AT1G16780 ID=AT1G16780.1; Parent=AT1G16780; Name=AT1G16780.1; Note=Inorganic H pyrophosphatase family protein; curator_summary=Encodes a type II H+-PPases that localizes to and function as a proton pump of the Golgi apparatus in most tissues except for mature leaves.; conf_class=6; symbol=VHP2%3B2; computational_description=VHP2%3B2%3B FUNCTIONS IN: inorganic diphosphatase activity%2C hydrogen-translocating pyrophosphatase activity%3B INVOLVED IN: proton transport%3B LOCATED IN: Golgi apparatus%2C vacuole%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Inorganic H+ pyrophosphatase (InterPro:IPR004131)%3B BEST Arabidopsis thaliana protein match is: vacuolar H+-pyrophosphatase 2 (TAIR:AT1G78920.2)%3B Has 6490 Blast hits to 6472 proteins in 788 species: Archae - 67%3B Bacteria - 1308%3B Metazoa - 5%3B Fungi - 1%3B Plants - 281%3B Viruses - 0%3B Other Eukaryotes - 4828 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:15215502, PMID:17660356, PMID:18650403, PMID:20605924, locus:2015626; locus_type=protein_coding
AT1G16780.2	chr1:005739468	0.0	C/5739468-5739567,5739697-5739916,5740003-5740114,5740195-5740350,5740441-5740605,5740689-5741126,5741310-5741497,5741672-5741792,5741888-5742060,5742435-5742567,5742637-5742784,5742870-5743021,5743126-5743329,5743471-5743569	AT1G16780.2 CDS AT1G16780 ID=AT1G16780.2; Parent=AT1G16780; Name=AT1G16780.2; Note=Inorganic H pyrophosphatase family protein; symbol=VHP2%3B2; Dbxref=PMID:15215502, PMID:17660356, PMID:18650403, PMID:20605924, locus:2015626; curator_summary=Encodes a type II H+-PPases that localizes to and function as a proton pump of the Golgi apparatus in most tissues except for mature leaves.; computational_description=VHP2%3B2%3B FUNCTIONS IN: inorganic diphosphatase activity%2C hydrogen-translocating pyrophosphatase activity%3B INVOLVED IN: proton transport%3B LOCATED IN: Golgi apparatus%2C vacuole%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Inorganic H+ pyrophosphatase (InterPro:IPR004131)%3B BEST Arabidopsis thaliana protein match is: vacuolar H+-pyrophosphatase 2 (TAIR:AT1G78920.2)%3B Has 6490 Blast hits to 6472 proteins in 788 species: Archae - 67%3B Bacteria - 1308%3B Metazoa - 5%3B Fungi - 1%3B Plants - 281%3B Viruses - 0%3B Other Eukaryotes - 4828 (source: NCBI BLink).; locus_type=protein_coding
AT1G16780.3	chr1:005739468	0.0	C/5739468-5739567,5739697-5739916,5740003-5740114,5740195-5740350,5740441-5740605,5740689-5741126,5741310-5741497,5741672-5741792,5741888-5742060,5742435-5742567,5742637-5742784,5742870-5743021,5743126-5743329,5743471-5743569	AT1G16780.3 CDS AT1G16780 ID=AT1G16780.3; Parent=AT1G16780; Name=AT1G16780.3; Note=Inorganic H pyrophosphatase family protein; symbol=VHP2%3B2; Dbxref=PMID:15215502, PMID:17660356, PMID:18650403, PMID:20605924, locus:2015626; curator_summary=Encodes a type II H+-PPases that localizes to and function as a proton pump of the Golgi apparatus in most tissues except for mature leaves.; computational_description=VHP2%3B2%3B FUNCTIONS IN: inorganic diphosphatase activity%2C hydrogen-translocating pyrophosphatase activity%3B INVOLVED IN: proton transport%3B LOCATED IN: Golgi apparatus%2C vacuole%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Inorganic H+ pyrophosphatase (InterPro:IPR004131)%3B BEST Arabidopsis thaliana protein match is: vacuolar H+-pyrophosphatase 2 (TAIR:AT1G78920.2)%3B Has 6490 Blast hits to 6472 proteins in 788 species: Archae - 67%3B Bacteria - 1308%3B Metazoa - 5%3B Fungi - 1%3B Plants - 281%3B Viruses - 0%3B Other Eukaryotes - 4828 (source: NCBI BLink).; locus_type=protein_coding
AT1G16790.1	chr1:005744638	0.0	W/5744638-5745072	AT1G16790.1 CDS AT1G16790 ID=AT1G16790.1; Parent=AT1G16790; Name=AT1G16790.1; Note=ribosomal protein-like protein; conf_class=1; computational_description=ribosomal protein-related%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast thylakoid membrane%2C chloroplast%2C chloroplast envelope%3B EXPRESSED IN: 19 plant structures%3B EXPRESSED DURING: 11 growth stages%3B Has 10 Blast hits to 10 proteins in 6 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 10%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15322131, locus:2015611; locus_type=protein_coding
AT1G16800.1	chr1:005745523	0.0	C/5745523-5745545,5745659-5746707,5746798-5747036,5747201-5747326,5747405-5747470,5747551-5748467,5748604-5749006,5749275-5750407,5750507-5750777,5750933-5751226,5751518-5751655,5751783-5751891,5751991-5752180,5752391-5752569,5752983-5753056,5753165-5753287,5753606-5753759,5753865-5754011,5754122-5754201,5754291-5754407,5754611-5754995,5755136-5755263	AT1G16800.1 CDS AT1G16800 ID=AT1G16800.1; Parent=AT1G16800; Name=AT1G16800.1; Note=P-loop containing nucleoside triphosphate hydrolases superfamily protein; conf_class=6; computational_description=P-loop containing nucleoside triphosphate hydrolases superfamily protein%3B BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G30100.1)%3B Has 9771 Blast hits to 8579 proteins in 1344 species: Archae - 197%3B Bacteria - 2032%3B Metazoa - 2727%3B Fungi - 1277%3B Plants - 815%3B Viruses - 364%3B Other Eukaryotes - 2359 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:15955926, PMID:17511964, PMID:17551672, PMID:18772186, locus:2015596; locus_type=protein_coding
AT1G16800.2	chr1:005745523	0.0	C/5745523-5745545,5745659-5746707,5746798-5747036,5747201-5747326,5747405-5747470,5747551-5748467,5748604-5749006,5749275-5750407,5750507-5750777,5750933-5751226,5751518-5751655,5751783-5751891,5751991-5752569,5752983-5753056,5753165-5753287,5753394-5753524,5753611-5753759,5753865-5754011,5754122-5754201,5754291-5754407,5754611-5754995,5755136-5755263	AT1G16800.2 CDS AT1G16800 ID=AT1G16800.2; Parent=AT1G16800; Name=AT1G16800.2; Note=P-loop containing nucleoside triphosphate hydrolases superfamily protein; computational_description=P-loop containing nucleoside triphosphate hydrolases superfamily protein%3B BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G30100.1)%3B Has 9771 Blast hits to 8579 proteins in 1344 species: Archae - 197%3B Bacteria - 2032%3B Metazoa - 2727%3B Fungi - 1277%3B Plants - 815%3B Viruses - 364%3B Other Eukaryotes - 2359 (source: NCBI BLink).; Dbxref=PMID:15955926, PMID:17511964, PMID:17551672, PMID:18772186, locus:2015596; locus_type=protein_coding
AT1G16800.3	chr1:005745523	0.0	C/5745523-5745545,5745659-5746707,5746798-5747036,5747201-5747326,5747405-5747470,5747551-5748467,5748604-5749006,5749275-5750407,5750507-5750777,5750933-5751226,5751518-5751655,5751783-5751891,5751991-5752180,5752391-5752569,5752983-5753056,5753165-5753287,5753394-5753524,5753611-5753759,5753865-5754011,5754122-5754201,5754291-5754407,5754611-5754995,5755136-5755263	AT1G16800.3 CDS AT1G16800 ID=AT1G16800.3; Parent=AT1G16800; Name=AT1G16800.3; Note=P-loop containing nucleoside triphosphate hydrolases superfamily protein; computational_description=P-loop containing nucleoside triphosphate hydrolases superfamily protein%3B BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G30100.1)%3B Has 9771 Blast hits to 8579 proteins in 1344 species: Archae - 197%3B Bacteria - 2032%3B Metazoa - 2727%3B Fungi - 1277%3B Plants - 815%3B Viruses - 364%3B Other Eukaryotes - 2359 (source: NCBI BLink).; Dbxref=PMID:15955926, PMID:17511964, PMID:17551672, PMID:18772186, locus:2015596; locus_type=protein_coding
AT1G16810.1	chr1:005756150	0.0	W/5756150-5756297,5756408-5756694	AT1G16810.1 CDS AT1G16810 ID=AT1G16810.1; Parent=AT1G16810; Name=AT1G16810.1; Note=7-dehydrocholesterol reductase-like protein; conf_class=2; computational_description=unknown protein%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1754%2C eukaryotic (InterPro:IPR013865)%3B Has 395 Blast hits to 394 proteins in 162 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 181%3B Fungi - 91%3B Plants - 65%3B Viruses - 0%3B Other Eukaryotes - 58 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18650403, locus:2015586; locus_type=protein_coding
AT1G16810.2	chr1:005756150	0.0	W/5756150-5756297,5756408-5756694	AT1G16810.2 CDS AT1G16810 ID=AT1G16810.2; Parent=AT1G16810; Name=AT1G16810.2; Note=7-dehydrocholesterol reductase-like protein; conf_class=2; computational_description=unknown protein%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1754%2C eukaryotic (InterPro:IPR013865)%3B Has 395 Blast hits to 394 proteins in 162 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 181%3B Fungi - 91%3B Plants - 65%3B Viruses - 0%3B Other Eukaryotes - 58 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18650403, locus:2015586; locus_type=protein_coding
AT1G16810.3	chr1:005756150	0.0	W/5756150-5756297,5756408-5756694	AT1G16810.3 CDS AT1G16810 ID=AT1G16810.3; Parent=AT1G16810; Name=AT1G16810.3; Note=7-dehydrocholesterol reductase-like protein; Dbxref=PMID:18650403, locus:2015586; computational_description=unknown protein%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1754%2C eukaryotic (InterPro:IPR013865)%3B Has 395 Blast hits to 394 proteins in 162 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 181%3B Fungi - 91%3B Plants - 65%3B Viruses - 0%3B Other Eukaryotes - 58 (source: NCBI BLink).; locus_type=protein_coding
AT1G16820.1	chr1:005757199	0.0	C/5757199-5757213,5757308-5757397,5757481-5757559,5758367-5758464	AT1G16820.1 CDS AT1G16820 ID=AT1G16820.1; Parent=AT1G16820; Name=AT1G16820.1; Note=vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-like protein; conf_class=6; computational_description=vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-related%3B LOCATED IN: plasma membrane%2C vacuole%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 8 growth stages%3B BEST Arabidopsis thaliana protein match is: vacuolar ATP synthase subunit A (TAIR:AT1G78900.2)%3B Has 151 Blast hits to 150 proteins in 46 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 137%3B Viruses - 0%3B Other Eukaryotes - 14 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:15215502, locus:2015606; locus_type=protein_coding
AT1G16820.2	chr1:005757199	0.0	C/5757199-5757213,5757308-5757397,5757481-5757559,5758186-5758202	AT1G16820.2 CDS AT1G16820 ID=AT1G16820.2; Parent=AT1G16820; Name=AT1G16820.2; Note=vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-like protein; conf_class=3; computational_description=vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-related%3B LOCATED IN: plasma membrane%2C vacuole%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 8 growth stages%3B BEST Arabidopsis thaliana protein match is: vacuolar ATP synthase subunit A (TAIR:AT1G78900.2)%3B Has 151 Blast hits to 150 proteins in 46 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 137%3B Viruses - 0%3B Other Eukaryotes - 14 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15215502, locus:2015606; locus_type=protein_coding
AT1G16820.3	chr1:005757199	0.0	C/5757199-5757213,5757308-5757397,5757481-5757522	AT1G16820.3 CDS AT1G16820 ID=AT1G16820.3; Parent=AT1G16820; Name=AT1G16820.3; Note=vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-like protein; computational_description=vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-related%3B LOCATED IN: plasma membrane%2C vacuole%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 8 growth stages%3B BEST Arabidopsis thaliana protein match is: vacuolar ATP synthase subunit A (TAIR:AT1G78900.2)%3B Has 151 Blast hits to 150 proteins in 46 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 137%3B Viruses - 0%3B Other Eukaryotes - 14 (source: NCBI BLink).; Dbxref=PMID:15215502, locus:2015606; locus_type=protein_coding
AT1G16820.4	chr1:005757199	0.0	C/5757199-5757213,5757308-5757397,5757481-5757522	AT1G16820.4 CDS AT1G16820 ID=AT1G16820.4; Parent=AT1G16820; Name=AT1G16820.4; Note=vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-like protein; computational_description=vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-related%3B LOCATED IN: plasma membrane%2C vacuole%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 8 growth stages%3B BEST Arabidopsis thaliana protein match is: vacuolar ATP synthase subunit A (TAIR:AT1G78900.2)%3B Has 151 Blast hits to 150 proteins in 46 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 137%3B Viruses - 0%3B Other Eukaryotes - 14 (source: NCBI BLink).; Dbxref=PMID:15215502, locus:2015606; locus_type=protein_coding
AT1G05267.1	chr1:005757508	0.0	W/5757508-5758384	AT1G05267.1 antisense_lncRNA AT1G05267 ID=AT1G05267.1; Parent=AT1G05267; Name=AT1G05267.1; description=Natural antisense transcript overlaps with AT1G16820; Note=Natural antisense transcript overlaps with AT1G16820; locus_type=antisense_long_noncoding_rna
AT1G05273.1	chr1:005758382	0.0	W/5758382-5758575	AT1G05273.1 snRNA AT1G05273 ID=AT1G05273.1; Parent=AT1G05273; Name=AT1G05273.1; Note=U2; symbol=U2-1; Dbxref=PMID:15575968; Alias=U2.1; locus_type=small_nuclear_rna
AT1G16825.1	chr1:005758877	0.0	W/5758877-5759043,5759650-5759791,5760071-5760140,5760252-5760340	AT1G16825.1 CDS AT1G16825 ID=AT1G16825.1; Parent=AT1G16825; Name=AT1G16825.1; Note=Reticulon family protein; conf_class=2; computational_description=Reticulon family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endoplasmic reticulum%3B CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388)%3B BEST Arabidopsis thaliana protein match is: Reticulon family protein (TAIR:AT1G78895.1)%3B Has 155 Blast hits to 155 proteins in 17 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 155%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:5019474612; locus_type=protein_coding
AT1G16825.2	chr1:005758877	0.0	W/5758877-5759043,5759650-5759836	AT1G16825.2 CDS AT1G16825 ID=AT1G16825.2; Parent=AT1G16825; Name=AT1G16825.2; Note=Reticulon family protein; computational_description=Reticulon family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endoplasmic reticulum%3B CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388)%3B BEST Arabidopsis thaliana protein match is: Reticulon family protein (TAIR:AT1G78895.1)%3B Has 155 Blast hits to 155 proteins in 17 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 155%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=locus:5019474612; locus_type=protein_coding
AT1G16830.1	chr1:005760793	0.0	W/5760793-5762619	AT1G16830.1 CDS AT1G16830 ID=AT1G16830.1; Parent=AT1G16830; Name=AT1G16830.1; Note=Pentatricopeptide repeat (PPR) superfamily protein; conf_class=4; computational_description=Pentatricopeptide repeat (PPR) superfamily protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: mitochondrion%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G53700.1)%3B Has 39592 Blast hits to 12738 proteins in 255 species: Archae - 3%3B Bacteria - 24%3B Metazoa - 191%3B Fungi - 211%3B Plants - 38370%3B Viruses - 0%3B Other Eukaryotes - 793 (source: NCBI BLink).; conf_rating=***; Dbxref=locus:2015671; locus_type=protein_coding
AT1G16840.1	chr1:005763111	0.0	C/5763111-5763190,5763579-5763984	AT1G16840.1 CDS AT1G16840 ID=AT1G16840.1; Parent=AT1G16840; Name=AT1G16840.1; Note=hypothetical protein; conf_class=2; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78890.1)%3B Has 71 Blast hits to 71 proteins in 12 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 71%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, locus:2035510; locus_type=protein_coding
AT1G16840.3	chr1:005763111	0.0	C/5763111-5763190,5763579-5763984	AT1G16840.3 CDS AT1G16840 ID=AT1G16840.3; Parent=AT1G16840; Name=AT1G16840.3; Note=hypothetical protein; conf_class=2; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78890.1)%3B Has 71 Blast hits to 71 proteins in 12 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 71%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, locus:2035510; locus_type=protein_coding
AT1G16840.4	chr1:005763111	0.0	C/5763111-5763190,5763579-5763984	AT1G16840.4 CDS AT1G16840 ID=AT1G16840.4; Parent=AT1G16840; Name=AT1G16840.4; Note=hypothetical protein; conf_class=2; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78890.1)%3B Has 71 Blast hits to 71 proteins in 12 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 71%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, locus:2035510; locus_type=protein_coding
AT1G16840.2	chr1:005763499	0.0	C/5763499-5763984	AT1G16840.2 CDS AT1G16840 ID=AT1G16840.2; Parent=AT1G16840; Name=AT1G16840.2; Note=hypothetical protein; conf_class=2; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78890.1)%3B Has 71 Blast hits to 71 proteins in 12 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 71%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, locus:2035510; locus_type=protein_coding
AT1G16840.5	chr1:005763499	0.0	C/5763499-5763984	AT1G16840.5 CDS AT1G16840 ID=AT1G16840.5; Parent=AT1G16840; Name=AT1G16840.5; Note=hypothetical protein; Dbxref=PMID:18775970, locus:2035510; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78890.1)%3B Has 71 Blast hits to 71 proteins in 12 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 71%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; locus_type=protein_coding
AT1G16850.1	chr1:005765062	0.0	C/5765062-5765275,5765374-5765618	AT1G16850.1 CDS AT1G16850 ID=AT1G16850.1; Parent=AT1G16850; Name=AT1G16850.1; Note=transmembrane protein; conf_class=2; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: response to salt stress%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: leaf apex%2C leaf whorl%2C male gametophyte%2C flower%2C leaf%3B EXPRESSED DURING: LP.06 six leaves visible%2C LP.04 four leaves visible%2C LP.10 ten leaves visible%2C petal differentiation and expansion stage%2C LP.08 eight leaves visible%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64820.1)%3B Has 24 Blast hits to 24 proteins in 6 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 24%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12535340, PMID:12609047, PMID:15165189, PMID:15247402, PMID:15356330, PMID:16121258, PMID:16463051, PMID:16673935, PMID:17316173, PMID:17337630, PMID:17478635, PMID:18643985, locus:2035502; locus_type=protein_coding
AT1G16860.uORF1	chr1:005767516	0.0	W/5767516-5767593	AT1G16860.uORF1 uORF AT1G16860 ID=AT1G16860.uORF1; Derives_from=AT1G16860; Name=AT1G16860.uORF1; Note=Ubiquitin-specific protease family C19-related protein; computational_description=Ubiquitin-specific protease family C19-related protein%3B LOCATED IN: plasma membrane%3B BEST Arabidopsis thaliana protein match is: Ubiquitin-specific protease family C19-related protein (TAIR:AT1G78880.1)%3B Has 605 Blast hits to 295 proteins in 85 species: Archae - 0%3B Bacteria - 22%3B Metazoa - 26%3B Fungi - 28%3B Plants - 169%3B Viruses - 0%3B Other Eukaryotes - 360 (source: NCBI BLink).; Dbxref=PMID:15295017, PMID:16120808, PMID:17663791, PMID:22645532, locus:2015646; locus_type=protein_coding
AT1G16860.1	chr1:005768280	0.0	W/5768280-5769143,5769431-5769586,5769686-5769897,5769991-5770183	AT1G16860.1 CDS AT1G16860 ID=AT1G16860.1; Parent=AT1G16860; Name=AT1G16860.1; Note=Ubiquitin-specific protease family C19-related protein; conf_class=2; computational_description=Ubiquitin-specific protease family C19-related protein%3B LOCATED IN: plasma membrane%3B BEST Arabidopsis thaliana protein match is: Ubiquitin-specific protease family C19-related protein (TAIR:AT1G78880.1)%3B Has 605 Blast hits to 295 proteins in 85 species: Archae - 0%3B Bacteria - 22%3B Metazoa - 26%3B Fungi - 28%3B Plants - 169%3B Viruses - 0%3B Other Eukaryotes - 360 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15295017, PMID:16120808, PMID:17663791, PMID:22645532, locus:2015646; locus_type=protein_coding
AT1G16870.1	chr1:005770964	0.0	C/5770964-5771075,5771245-5771417,5771489-5771575,5771692-5771946,5772027-5772238,5772446-5772612,5772721-5773157	AT1G16870.1 CDS AT1G16870 ID=AT1G16870.1; Parent=AT1G16870; Name=AT1G16870.1; Note=mitochondrial 28S ribosomal protein S29-like protein; conf_class=2; computational_description=mitochondrial 28S ribosomal protein S29-related%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein S23/S29%2C mitochondrial (InterPro:IPR019368)%3B Has 239 Blast hits to 239 proteins in 116 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 106%3B Fungi - 38%3B Plants - 38%3B Viruses - 0%3B Other Eukaryotes - 57 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2015631; locus_type=protein_coding
AT1G16880.1	chr1:005773796	0.0	W/5773796-5773950,5774332-5774377,5774464-5774601,5774733-5774827,5774969-5775053,5775150-5775209,5775540-5775595,5775704-5775809,5775913-5775981,5776063-5776125	AT1G16880.1 CDS AT1G16880 ID=AT1G16880.1; Parent=AT1G16880; Name=AT1G16880.1; Note=uridylyltransferase-like protein; curator_summary=Encodes a ACT domain-containing protein. The ACT domain%2C named after bacterial aspartate kinase%2C chorismate mutase and TyrA (prephenate dehydrogenase)%2C is a regulatory domain that serves as an amino acid-binding site in feedback-regulated amino acid metabolic enzymes.; conf_class=2; symbol=ACR11; full_name=ACT domain repeats 11; computational_description=uridylyltransferase-related%3B INVOLVED IN: response to cold%3B LOCATED IN: chloroplast thylakoid membrane%2C stromule%2C chloroplast stroma%2C chloroplast%2C chloroplast envelope%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B BEST Arabidopsis thaliana protein match is: ACT domain-containing protein (TAIR:AT5G04740.1)%3B Has 499 Blast hits to 450 proteins in 72 species: Archae - 0%3B Bacteria - 103%3B Metazoa - 0%3B Fungi - 0%3B Plants - 340%3B Viruses - 0%3B Other Eukaryotes - 56 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:15322131, PMID:16548064, PMID:16923014, PMID:17828791, PMID:18650403, PMID:21861936, PMID:24064926, locus:2015616; locus_type=protein_coding
AT1G16880.2	chr1:005773796	0.0	W/5773796-5773950,5774332-5774377,5774464-5774601,5774733-5774827,5774969-5775053,5775150-5775272	AT1G16880.2 CDS AT1G16880 ID=AT1G16880.2; Parent=AT1G16880; Name=AT1G16880.2; Note=uridylyltransferase-like protein; curator_summary=Encodes a ACT domain-containing protein. The ACT domain%2C named after bacterial aspartate kinase%2C chorismate mutase and TyrA (prephenate dehydrogenase)%2C is a regulatory domain that serves as an amino acid-binding site in feedback-regulated amino acid metabolic enzymes.; conf_class=2; symbol=ACR11; full_name=ACT domain repeats 11; computational_description=uridylyltransferase-related%3B INVOLVED IN: response to cold%3B LOCATED IN: chloroplast thylakoid membrane%2C stromule%2C chloroplast stroma%2C chloroplast%2C chloroplast envelope%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B BEST Arabidopsis thaliana protein match is: ACT domain-containing protein (TAIR:AT5G04740.1)%3B Has 499 Blast hits to 450 proteins in 72 species: Archae - 0%3B Bacteria - 103%3B Metazoa - 0%3B Fungi - 0%3B Plants - 340%3B Viruses - 0%3B Other Eukaryotes - 56 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:15322131, PMID:16548064, PMID:16923014, PMID:17828791, PMID:18650403, PMID:21861936, PMID:24064926, locus:2015616; locus_type=protein_coding
AT1G16890.1	chr1:005776550	0.0	C/5776550-5776587,5776687-5776784,5776893-5776966,5777079-5777120,5777414-5777472,5777852-5777903	AT1G16890.1 CDS AT1G16890 ID=AT1G16890.1; Parent=AT1G16890; Name=AT1G16890.1; Note=ubiquitin-conjugating enzyme 36; curator_summary=UBC36/UBC13B encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair. It can bind to the MMZ/UEV1 proteins in vitro.; conf_class=2; symbol=UBC36; Alias=AtUBC36, UBC13B, UBIQUITIN CONJUGATING ENZYME 13B; full_name=ubiquitin-conjugating enzyme 36; computational_description=ubiquitin-conjugating enzyme 36 (UBC36)%3B FUNCTIONS IN: ubiquitin-protein ligase activity%2C protein binding%3B INVOLVED IN: root epidermal cell differentiation%2C response to iron ion%2C ubiquitin-dependent protein catabolic process%3B LOCATED IN: UBC13-MMS2 complex%2C plasma membrane%3B EXPRESSED IN: cultured cell%3B CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135)%2C Ubiquitin-conjugating enzyme%2C E2 (InterPro:IPR000608)%3B BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 35 (TAIR:AT1G78870.2)%3B Has 10019 Blast hits to 10015 proteins in 393 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 4493%3B Fungi - 2117%3B Plants - 1786%3B Viruses - 23%3B Other Eukaryotes - 1596 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11590065, PMID:12383089, PMID:16339806, PMID:16786304, PMID:17586653, PMID:18178771, PMID:18650403, PMID:20113438, PMID:20736450, PMID:22513011, locus:2015581; locus_type=protein_coding
AT1G16890.2	chr1:005776550	0.0	C/5776550-5776587,5776687-5776784,5776893-5776966,5777079-5777120,5777414-5777472,5777852-5777938,5778062-5778089,5778292-5778327	AT1G16890.2 CDS AT1G16890 ID=AT1G16890.2; Parent=AT1G16890; Name=AT1G16890.2; Note=ubiquitin-conjugating enzyme 36; curator_summary=UBC36/UBC13B encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair. It can bind to the MMZ/UEV1 proteins in vitro.; conf_class=2; symbol=UBC36; Alias=AtUBC36, UBC13B, UBIQUITIN CONJUGATING ENZYME 13B; full_name=ubiquitin-conjugating enzyme 36; computational_description=ubiquitin-conjugating enzyme 36 (UBC36)%3B FUNCTIONS IN: ubiquitin-protein ligase activity%2C protein binding%3B INVOLVED IN: root epidermal cell differentiation%2C response to iron ion%2C ubiquitin-dependent protein catabolic process%3B LOCATED IN: UBC13-MMS2 complex%2C plasma membrane%3B EXPRESSED IN: cultured cell%3B CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135)%2C Ubiquitin-conjugating enzyme%2C E2 (InterPro:IPR000608)%3B BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 35 (TAIR:AT1G78870.2)%3B Has 10019 Blast hits to 10015 proteins in 393 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 4493%3B Fungi - 2117%3B Plants - 1786%3B Viruses - 23%3B Other Eukaryotes - 1596 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11590065, PMID:12383089, PMID:16339806, PMID:16786304, PMID:17586653, PMID:18178771, PMID:18650403, PMID:20113438, PMID:20736450, PMID:22513011, locus:2015581; locus_type=protein_coding
AT1G16890.3	chr1:005776550	0.0	C/5776550-5776587,5776687-5776784,5776893-5776966,5777079-5777120,5777414-5777472,5777852-5777938,5778035-5778089,5778292-5778327	AT1G16890.3 CDS AT1G16890 ID=AT1G16890.3; Parent=AT1G16890; Name=AT1G16890.3; Note=ubiquitin-conjugating enzyme 36; curator_summary=UBC36/UBC13B encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair. It can bind to the MMZ/UEV1 proteins in vitro.; conf_class=3; symbol=UBC36; Alias=AtUBC36, UBC13B, UBIQUITIN CONJUGATING ENZYME 13B; full_name=ubiquitin-conjugating enzyme 36; computational_description=ubiquitin-conjugating enzyme 36 (UBC36)%3B FUNCTIONS IN: ubiquitin-protein ligase activity%2C protein binding%3B INVOLVED IN: root epidermal cell differentiation%2C response to iron ion%2C ubiquitin-dependent protein catabolic process%3B LOCATED IN: UBC13-MMS2 complex%2C plasma membrane%3B EXPRESSED IN: cultured cell%3B CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135)%2C Ubiquitin-conjugating enzyme%2C E2 (InterPro:IPR000608)%3B BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 35 (TAIR:AT1G78870.2)%3B Has 10019 Blast hits to 10015 proteins in 393 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 4493%3B Fungi - 2117%3B Plants - 1786%3B Viruses - 23%3B Other Eukaryotes - 1596 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11590065, PMID:12383089, PMID:16339806, PMID:16786304, PMID:17586653, PMID:18178771, PMID:18650403, PMID:20113438, PMID:20736450, PMID:22513011, locus:2015581; locus_type=protein_coding
AT1G05277.1	chr1:005777100	0.0	W/5777100-5777828	AT1G05277.1 antisense_lncRNA AT1G05277 ID=AT1G05277.1; Parent=AT1G05277; Name=AT1G05277.1; description=Natural antisense transcript overlaps with AT1G16890; Note=Natural antisense transcript overlaps with AT1G16890; locus_type=antisense_long_noncoding_rna
AT1G16900.1	chr1:005779262	0.0	C/5779262-5779393,5779482-5779571,5779665-5779861,5780034-5780172,5780273-5780384,5780532-5780827,5780961-5781178,5781392-5781551,5781642-5781729,5782023-5782303	AT1G16900.1 CDS AT1G16900 ID=AT1G16900.1; Parent=AT1G16900; Name=AT1G16900.1; Note=Alg9-like mannosyltransferase family; curator_summary=Encodes the Arabidopsis ortholog of the yeast/human ALG9 catalyzing the luminal addition of two alpha-1%2C2 Man residues in assembling Glc3Man9GlcNAc2.; conf_class=2; symbol=EBS3; full_name=EMS-mutagenized bri1 suppressor 3; computational_description=Alg9-like mannosyltransferase family%3B FUNCTIONS IN: sugar binding%2C transferase activity%2C transferring glycosyl groups%3B INVOLVED IN: GPI anchor biosynthetic process%3B LOCATED IN: intrinsic to endoplasmic reticulum membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Alg9-like mannosyltransferase (InterPro:IPR005599)%3B BEST Arabidopsis thaliana protein match is: Alg9-like mannosyltransferase family (TAIR:AT5G14850.2)%3B Has 817 Blast hits to 803 proteins in 193 species: Archae - 0%3B Bacteria - 22%3B Metazoa - 302%3B Fungi - 301%3B Plants - 91%3B Viruses - 0%3B Other Eukaryotes - 101 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18315867, PMID:18793471, PMID:22733738, locus:2015601; locus_type=protein_coding
AT1G16905.1	chr1:005782546	0.0	C/5782546-5783817	AT1G16905.1 CDS AT1G16905 ID=AT1G16905.1; Parent=AT1G16905; Name=AT1G16905.1; Note=Curculin-like (mannose-binding) lectin family protein; conf_class=1; computational_description=Curculin-like (mannose-binding) lectin family protein%3B FUNCTIONS IN: sugar binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480)%3B BEST Arabidopsis thaliana protein match is: D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (TAIR:AT1G78860.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:4010713447; locus_type=protein_coding
AT1TE18700	chr1:005784963	0.0	W/5784963-5785335	AT1TE18700 transposable_element AT1TE18700 ID=AT1TE18700; Name=AT1TE18700; Alias=ATCOPIA9
AT1G16910.1	chr1:005785373	0.0	W/5785373-5785867	AT1G16910.1 CDS AT1G16910 ID=AT1G16910.1; Parent=AT1G16910; Name=AT1G16910.1; Note=LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); conf_class=1; symbol=LSH8; full_name=LIGHT SENSITIVE HYPOCOTYLS 8; computational_description=LIGHT SENSITIVE HYPOCOTYLS 8 (LSH8)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 (InterPro:IPR006936)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF640) (TAIR:AT1G78815.1)%3B Has 310 Blast hits to 310 proteins in 18 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 14%3B Fungi - 0%3B Plants - 296%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14871309, PMID:17028338, locus:2015591; locus_type=protein_coding
AT1G16916.1	chr1:005786762	0.0	C/5786762-5786895,5786984-5787047	AT1G16916.1 CDS AT1G16916 ID=AT1G16916.1; Parent=AT1G16916; Name=AT1G16916.1; Note=transmembrane protein; conf_class=1; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:4515102540; locus_type=protein_coding
AT1G16916.2	chr1:005786762	0.0	C/5786762-5786895,5786984-5787158	AT1G16916.2 CDS AT1G16916 ID=AT1G16916.2; Parent=AT1G16916; Name=AT1G16916.2; Note=transmembrane protein; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=locus:4515102540; locus_type=protein_coding
AT1G16920.1	chr1:005787489	0.0	C/5787489-5787918,5788927-5789147	AT1G16920.1 CDS AT1G16920 ID=AT1G16920.1; Parent=AT1G16920; Name=AT1G16920.1; Note=RAB GTPase homolog A1B; curator_summary=small GTP-binding protein (Rab11)similar to YPT3/RAB11 proteins in yeast and mammals%2C respectively. YPT3/RAB11 is involved in intracellular protein trafficking.; conf_class=2; symbol=RABA1b; Alias=ATRABA1B, RAB GTPase homolog A1B, BEX5, BFA-visualized exocytic trafficking defective 5, RAB11; full_name=RAB GTPase homolog A1B; computational_description=RAB GTPase homolog A1B (RABA1b)%3B FUNCTIONS IN: GTP binding%3B INVOLVED IN: intracellular protein transport%3B LOCATED IN: trans-Golgi network%2C plasma membrane%2C vacuole%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ran GTPase (InterPro:IPR002041)%2C Ras (InterPro:IPR013753)%2C Ras small GTPase%2C Ras type (InterPro:IPR003577)%2C Rab11-related (InterPro:IPR015595)%2C Small GTPase%2C Rho type (InterPro:IPR003578)%2C Small GTP-binding protein (InterPro:IPR005225)%2C Ras GTPase (InterPro:IPR001806)%2C Small GTPase (InterPro:IPR020851)%2C Ras small GTPase%2C Rab type (InterPro:IPR003579)%3B BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A1D (TAIR:AT4G18800.1)%3B Has 28198 Blast hits to 28143 proteins in 766 species: Archae - 30%3B Bacteria - 158%3B Metazoa - 14550%3B Fungi - 4232%3B Plants - 3316%3B Viruses - 20%3B Other Eukaryotes - 5892 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12644670, PMID:14760709, PMID:15060130, PMID:15449379, PMID:18650403, PMID:20718953, PMID:22773752, PMID:22974509, PMID:23602899, PMID:23803751, locus:2015576; locus_type=protein_coding
AT1G16930.1	chr1:005789987	0.0	W/5789987-5790907,5791013-5791153,5791247-5791534	AT1G16930.1 CDS AT1G16930 ID=AT1G16930.1; Parent=AT1G16930; Name=AT1G16930.1; Note=F-box/RNI-like/FBD-like domains-containing protein; conf_class=2; computational_description=F-box/RNI-like/FBD-like domains-containing protein%3B CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596)%2C F-box domain%2C cyclin-like (InterPro:IPR001810)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%2C FBD-like (InterPro:IPR006566)%2C Leucine-rich repeat 2 (InterPro:IPR013101)%3B BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT1G80470.1)%3B Has 2349 Blast hits to 2299 proteins in 27 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 2347%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2015681; locus_type=protein_coding
AT1G16930.2	chr1:005789987	0.0	W/5789987-5790907,5791013-5791153,5791247-5791534	AT1G16930.2 CDS AT1G16930 ID=AT1G16930.2; Parent=AT1G16930; Name=AT1G16930.2; Note=F-box/RNI-like/FBD-like domains-containing protein; Dbxref=locus:2015681; computational_description=F-box/RNI-like/FBD-like domains-containing protein%3B CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596)%2C F-box domain%2C cyclin-like (InterPro:IPR001810)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%2C FBD-like (InterPro:IPR006566)%2C Leucine-rich repeat 2 (InterPro:IPR013101)%3B BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT1G80470.1)%3B Has 2349 Blast hits to 2299 proteins in 27 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 2347%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; locus_type=protein_coding
AT1G16930.3	chr1:005789987	0.0	W/5789987-5790907,5791013-5791153,5791247-5791534	AT1G16930.3 CDS AT1G16930 ID=AT1G16930.3; Parent=AT1G16930; Name=AT1G16930.3; Note=F-box/RNI-like/FBD-like domains-containing protein; Dbxref=locus:2015681; computational_description=F-box/RNI-like/FBD-like domains-containing protein%3B CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596)%2C F-box domain%2C cyclin-like (InterPro:IPR001810)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%2C FBD-like (InterPro:IPR006566)%2C Leucine-rich repeat 2 (InterPro:IPR013101)%3B BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT1G80470.1)%3B Has 2349 Blast hits to 2299 proteins in 27 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 2347%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; locus_type=protein_coding
AT1G16940.1	chr1:005791983	0.0	W/5791983-5792825,5792925-5793068,5793174-5793491	AT1G16940.1 CDS AT1G16940 ID=AT1G16940.1; Parent=AT1G16940; Name=AT1G16940.1; Note=F-box/RNI-like/FBD-like domains-containing protein; conf_class=7; computational_description=F-box/RNI-like/FBD-like domains-containing protein%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C FBD (InterPro:IPR013596)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%2C FBD-like (InterPro:IPR006566)%3B BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT1G78750.1)%3B Has 1457 Blast hits to 1436 proteins in 34 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 27%3B Fungi - 0%3B Plants - 1429%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; conf_rating=**; Dbxref=locus:2015571; locus_type=protein_coding
AT1G16945.1	chr1:005793905	0.0	W/5793905-5793955,5794051-5794197	AT1G16945.1 CDS AT1G16945 ID=AT1G16945.1; Parent=AT1G16945; Name=AT1G16945.1; Note=F-box/FBD/LRR protein; locus_type=protein_coding
AT1G16950.1	chr1:005796083	0.0	W/5796083-5796364	AT1G16950.1 CDS AT1G16950 ID=AT1G16950.1; Parent=AT1G16950; Name=AT1G16950.1; Note=transmembrane protein; conf_class=1; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: stamen%3B EXPRESSED DURING: 4 anthesis%3B Has 17 Blast hits to 17 proteins in 5 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 17%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:2035515; locus_type=protein_coding
AT1TE18740	chr1:005797260	0.0	C/5797260-5797340	AT1TE18740 transposable_element AT1TE18740 ID=AT1TE18740; Name=AT1TE18740; Alias=ATENSPM5
AT1TE18745	chr1:005797671	0.0	C/5797671-5797691	AT1TE18745 transposable_element AT1TE18745 ID=AT1TE18745; Name=AT1TE18745; Alias=ATCOPIA92
AT1TE18750	chr1:005797692	0.0	C/5797692-5797910	AT1TE18750 transposable_element AT1TE18750 ID=AT1TE18750; Name=AT1TE18750; Alias=ATCOPIA92
AT1G16960.1	chr1:005799998	0.0	W/5799998-5800031,5800162-5800284,5800360-5800482,5800560-5800624	AT1G16960.1 CDS AT1G16960 ID=AT1G16960.1; Parent=AT1G16960; Name=AT1G16960.1; Note=Ubiquitin domain-containing protein; conf_class=2; computational_description=Ubiquitin domain-containing protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: N-terminal protein myristoylation%3B LOCATED IN: cellular_component unknown%3B BEST Arabidopsis thaliana protein match is: Ubiquitin domain-containing protein (TAIR:AT1G53400.1)%3B Has 325 Blast hits to 324 proteins in 115 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 145%3B Fungi - 67%3B Plants - 89%3B Viruses - 0%3B Other Eukaryotes - 24 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12912986, locus:2015566; locus_type=protein_coding
AT1G16970.1	chr1:005801159	0.0	C/5801159-5801272,5801396-5801558,5801670-5801772,5801858-5801978,5802066-5802158,5802288-5802348,5802457-5802518,5802931-5803078,5803348-5803424,5803656-5803833,5804056-5804114,5804224-5804307,5804434-5804551,5804667-5804772,5805035-5805149,5805242-5805361,5805482-5805559,5805659-5805724	AT1G16970.1 CDS AT1G16970 ID=AT1G16970.1; Parent=AT1G16970; Name=AT1G16970.1; Note=ATP-dependent DNA helicase 2 subunit Ku70-like protein; curator_summary=Ku80 and ku70 form the heterodimer complex Ku%2C required for proper maintenance of the telomeric C strand. Ku regulates the extension of the telomeric G strand. Interacts with WEX%2C and this interaction stimulates the WEX exonuclease activity.; conf_class=2; symbol=KU70; Alias=ATKU70, ARABIDOPSIS THALIANA KU70 HOMOLOG; full_name=KU70 homolog; computational_description=KU70 homolog (KU70)%3B FUNCTIONS IN: double-stranded DNA binding%2C protein binding%3B INVOLVED IN: DNA repair%2C response to heat%2C telomere maintenance%3B LOCATED IN: nucleus%2C DNA-dependent protein kinase-DNA ligase 4 complex%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Ku70/Ku80%2C N-terminal alpha/beta (InterPro:IPR005161)%2C DNA-binding SAP (InterPro:IPR003034)%2C DNA helicase%2C ATP-dependent%2C Ku type (InterPro:IPR006164)%2C Spen Paralogue and Orthologue SPOC%2C C-terminal-like (InterPro:IPR016194)%2C Ku70/Ku80 C-terminal arm (InterPro:IPR005160)%2C DNA helicase%2C ATP-dependent%2C Ku70 subunit (InterPro:IPR006165)%3B Has 475 Blast hits to 466 proteins in 181 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 182%3B Fungi - 177%3B Plants - 52%3B Viruses - 0%3B Other Eukaryotes - 58 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12032094, PMID:15589838, PMID:16396834, PMID:18515112, PMID:19244142, PMID:19188710, PMID:19923234, PMID:20385609, PMID:20817752, PMID:20853009, PMID:20844935, PMID:21653196, PMID:21889425, PMID:23282329, PMID:22810623, PMID:25641249, locus:2035495; locus_type=protein_coding
AT1TE18770	chr1:005805366	0.0	C/5805366-5805709	AT1TE18770 transposable_element AT1TE18770 ID=AT1TE18770; Name=AT1TE18770; Alias=VANDAL5A
AT1G16980.1	chr1:005807308	0.0	W/5807308-5807449,5807526-5807626,5807974-5808359,5808455-5808569,5808659-5808760,5808846-5808996,5809079-5809167,5809268-5809316,5809417-5809517,5809615-5809802,5809888-5810005,5810113-5810271,5810346-5810468,5810553-5810640,5810721-5810851,5810967-5811065,5811162-5811488	AT1G16980.1 CDS AT1G16980 ID=AT1G16980.1; Parent=AT1G16980; Name=AT1G16980.1; Note=trehalose-6-phosphate synthase; curator_summary=Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active but no trehalose phosphatase (TPP)-like domain.; conf_class=6; symbol=TPS2; Alias=ATTPS2, trehalose-phosphatase/synthase 2; full_name=trehalose-phosphatase/synthase 2; computational_description=trehalose-phosphatase/synthase 2 (TPS2)%3B CONTAINS InterPro DOMAIN/s: Alpha%2Calpha-trehalose-phosphate synthase (InterPro:IPR012766)%2C Glycosyl transferase%2C family 20 (InterPro:IPR001830)%2C Trehalose-phosphatase (InterPro:IPR003337)%3B BEST Arabidopsis thaliana protein match is: trehalose-phosphatase/synthase 3 (TAIR:AT1G17000.1)%3B Has 3329 Blast hits to 3259 proteins in 973 species: Archae - 45%3B Bacteria - 1730%3B Metazoa - 120%3B Fungi - 651%3B Plants - 352%3B Viruses - 0%3B Other Eukaryotes - 431 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:11701378, PMID:12508064, PMID:17453154, PMID:17981987, PMID:22905132, PMID:25495218, locus:2020357; locus_type=protein_coding
AT1G16980.2	chr1:005807308	0.0	W/5807308-5807449,5807526-5807626,5807974-5808359,5808455-5808569,5808659-5808760,5808846-5808996,5809079-5809167,5809268-5809316,5809417-5809517,5809615-5809802,5809888-5810005,5810113-5810271,5810346-5810468,5810721-5810851,5810967-5811000	AT1G16980.2 CDS AT1G16980 ID=AT1G16980.2; Parent=AT1G16980; Name=AT1G16980.2; Note=trehalose-6-phosphate synthase; symbol=TPS2; Alias=ATTPS2, trehalose-phosphatase/synthase 2; full_name=trehalose-phosphatase/synthase 2; curator_summary=Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active but no trehalose phosphatase (TPP)-like domain.; computational_description=trehalose-phosphatase/synthase 2 (TPS2)%3B CONTAINS InterPro DOMAIN/s: Alpha%2Calpha-trehalose-phosphate synthase (InterPro:IPR012766)%2C Glycosyl transferase%2C family 20 (InterPro:IPR001830)%2C Trehalose-phosphatase (InterPro:IPR003337)%3B BEST Arabidopsis thaliana protein match is: trehalose-phosphatase/synthase 3 (TAIR:AT1G17000.1)%3B Has 3329 Blast hits to 3259 proteins in 973 species: Archae - 45%3B Bacteria - 1730%3B Metazoa - 120%3B Fungi - 651%3B Plants - 352%3B Viruses - 0%3B Other Eukaryotes - 431 (source: NCBI BLink).; Dbxref=PMID:11701378, PMID:12508064, PMID:17453154, PMID:17981987, PMID:22905132, PMID:25495218, locus:2020357; locus_type=protein_coding
AT1TE18775	chr1:005807742	0.0	C/5807742-5807891	AT1TE18775 transposable_element AT1TE18775 ID=AT1TE18775; Name=AT1TE18775; Alias=ATDNAI27T9B
AT1TE18785	chr1:005811510	0.0	W/5811510-5811551	AT1TE18785 transposable_element AT1TE18785 ID=AT1TE18785; Name=AT1TE18785; Alias=ATREP15
AT1TE18790	chr1:005811552	0.0	W/5811552-5812560	AT1TE18790 transposable_element AT1TE18790 ID=AT1TE18790; Name=AT1TE18790; Alias=ATREP10D
AT1TE18795	chr1:005812561	0.0	W/5812561-5812700	AT1TE18795 transposable_element AT1TE18795 ID=AT1TE18795; Name=AT1TE18795; Alias=ATREP15
AT1G17000.1	chr1:005812728	0.0	W/5812728-5812863,5813008-5813045,5813142-5813527,5813626-5813740,5813834-5813935,5814024-5814174,5814262-5814350,5814436-5814484,5814582-5814682,5814781-5814968,5815070-5815187,5815268-5815425,5815545-5815667,5815755-5815842,5815928-5816058,5816205-5816303,5816384-5816662	AT1G17000.1 CDS AT1G17000 ID=AT1G17000.1; Parent=AT1G17000; Name=AT1G17000.1; Note=trehalose-phosphatase/synthase 3; curator_summary=Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active but no trehalose phosphatase (TPP)-like domain.; conf_class=6; symbol=TPS3; Alias=ATTPS3, trehalose-phosphatase/synthase 3; full_name=trehalose-phosphatase/synthase 3; computational_description=trehalose-phosphatase/synthase 3 (TPS3)%3B CONTAINS InterPro DOMAIN/s: Glycosyl transferase%2C family 20 (InterPro:IPR001830)%2C Trehalose-phosphatase (InterPro:IPR003337)%3B BEST Arabidopsis thaliana protein match is: trehalose-phosphatase/synthase 2 (TAIR:AT1G16980.1)%3B Has 3260 Blast hits to 3210 proteins in 969 species: Archae - 43%3B Bacteria - 1736%3B Metazoa - 120%3B Fungi - 628%3B Plants - 337%3B Viruses - 0%3B Other Eukaryotes - 396 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:11701378, PMID:12508064, PMID:18201973, locus:2020327; locus_type=protein_coding
AT1G17010.1	chr1:005817667	0.0	W/5817667-5817924,5818149-5818396,5818482-5818809,5818932-5819183	AT1G17010.1 CDS AT1G17010 ID=AT1G17010.1; Parent=AT1G17010; Name=AT1G17010.1; Note=2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; conf_class=2; computational_description=2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein%3B FUNCTIONS IN: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors%2C oxidoreductase activity%2C iron ion binding%3B INVOLVED IN: oxidation reduction%2C flavonoid biosynthetic process%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283)%2C Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123)%3B BEST Arabidopsis thaliana protein match is: senescence-related gene 1 (TAIR:AT1G17020.1)%3B Has 8317 Blast hits to 8272 proteins in 989 species: Archae - 0%3B Bacteria - 1073%3B Metazoa - 106%3B Fungi - 910%3B Plants - 4938%3B Viruses - 0%3B Other Eukaryotes - 1290 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2020422; locus_type=protein_coding
AT1TE18810	chr1:005819555	0.0	C/5819555-5820091	AT1TE18810 transposable_element AT1TE18810 ID=AT1TE18810; Name=AT1TE18810; Alias=HELITRONY1E
AT1G17020.1	chr1:005820258	0.0	W/5820258-5820512,5820767-5821014,5821094-5821424,5821499-5821741	AT1G17020.1 CDS AT1G17020 ID=AT1G17020.1; Parent=AT1G17020; Name=AT1G17020.1; Note=senescence-related gene 1; curator_summary=Encodes a novel member of the Fe(II)/ascorbate oxidase gene family%3B senescence-related gene.; conf_class=2; symbol=SRG1; Alias=ATSRG1, SENESCENCE-RELATED GENE 1; full_name=senescence-related gene 1; computational_description=senescence-related gene 1 (SRG1)%3B CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123)%3B BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G17010.1)%3B Has 8560 Blast hits to 8517 proteins in 996 species: Archae - 0%3B Bacteria - 1133%3B Metazoa - 115%3B Fungi - 988%3B Plants - 4970%3B Viruses - 0%3B Other Eukaryotes - 1354 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:8883383, PMID:12535341, PMID:12805589, PMID:14535885, PMID:15047901, PMID:15235117, PMID:16514542, PMID:18650403, PMID:18783601, locus:2020407; locus_type=protein_coding
AT1G17030.1	chr1:005822487	0.0	W/5822487-5822757,5822958-5823544,5823680-5824195,5824290-5824424	AT1G17030.1 CDS AT1G17030 ID=AT1G17030.1; Parent=AT1G17030; Name=AT1G17030.1; Note=hypothetical protein; conf_class=2; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G47010.2)%3B Has 70 Blast hits to 70 proteins in 13 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 69%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:20032078, locus:2020397; locus_type=protein_coding
AT1G17040.1	chr1:005825109	0.0	W/5825109-5825267,5825483-5825674,5825761-5825970,5826056-5826208,5826297-5826461,5826571-5826750,5826845-5827113,5827183-5827345,5827442-5827779,5827852-5827929,5828038-5828056	AT1G17040.1 CDS AT1G17040 ID=AT1G17040.1; Parent=AT1G17040; Name=AT1G17040.1; Note=SH2 domain protein A; curator_summary=Encodes a protein that contains an SH2 domain. It can pull down a 120-kD tyrosine-phosphorylated protein in vitro. It is predicted to act as a transcription factor.; conf_class=2; symbol=SHA; Alias=ATSHA, ARABIDOPSIS THALIANA SH2 DOMAIN PROTEIN A, STATLA, STAT-TYPE LINKER-SH2 DOMAIN FACTOR A; full_name=SH2 domain protein A; computational_description=SH2 domain protein A (SHA)%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%2C signal transducer activity%3B INVOLVED IN: signal transduction%2C regulation of transcription%2C DNA-dependent%3B LOCATED IN: nucleus%3B EXPRESSED IN: 11 plant structures%3B EXPRESSED DURING: 4 anthesis%2C C globular stage%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: SH2 motif (InterPro:IPR000980)%2C STAT transcription factor%2C core (InterPro:IPR001217)%2C Concanavalin A-like lectin/glucanase (InterPro:IPR008985)%3B BEST Arabidopsis thaliana protein match is: SH2 domain protein B (TAIR:AT1G78540.1)%3B Has 341 Blast hits to 335 proteins in 60 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 258%3B Fungi - 0%3B Plants - 45%3B Viruses - 0%3B Other Eukaryotes - 38 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15010618, PMID:15073273, PMID:15063865, PMID:20736450, locus:2020377; locus_type=protein_coding
AT1G17040.2	chr1:005825109	0.0	W/5825109-5825267,5825339-5825368,5825483-5825674,5825761-5825970,5826056-5826208,5826297-5826461,5826571-5826750,5826845-5827113,5827183-5827345,5827442-5827779,5827852-5827929,5828038-5828056	AT1G17040.2 CDS AT1G17040 ID=AT1G17040.2; Parent=AT1G17040; Name=AT1G17040.2; Note=SH2 domain protein A; curator_summary=Encodes a protein that contains an SH2 domain. It can pull down a 120-kD tyrosine-phosphorylated protein in vitro. It is predicted to act as a transcription factor.; conf_class=6; symbol=SHA; Alias=ATSHA, ARABIDOPSIS THALIANA SH2 DOMAIN PROTEIN A, STATLA, STAT-TYPE LINKER-SH2 DOMAIN FACTOR A; full_name=SH2 domain protein A; computational_description=SH2 domain protein A (SHA)%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%2C signal transducer activity%3B INVOLVED IN: signal transduction%2C regulation of transcription%2C DNA-dependent%3B LOCATED IN: nucleus%3B EXPRESSED IN: 11 plant structures%3B EXPRESSED DURING: 4 anthesis%2C C globular stage%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: SH2 motif (InterPro:IPR000980)%2C STAT transcription factor%2C core (InterPro:IPR001217)%2C Concanavalin A-like lectin/glucanase (InterPro:IPR008985)%3B BEST Arabidopsis thaliana protein match is: SH2 domain protein B (TAIR:AT1G78540.1)%3B Has 341 Blast hits to 335 proteins in 60 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 258%3B Fungi - 0%3B Plants - 45%3B Viruses - 0%3B Other Eukaryotes - 38 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:15010618, PMID:15073273, PMID:15063865, PMID:20736450, locus:2020377; locus_type=protein_coding
AT1G17040.3	chr1:005825109	0.0	W/5825109-5825267,5825483-5825674,5825761-5825970,5826056-5826208,5826297-5826461,5826571-5826750,5826845-5827113,5827183-5827345,5827442-5827783	AT1G17040.3 CDS AT1G17040 ID=AT1G17040.3; Parent=AT1G17040; Name=AT1G17040.3; Note=SH2 domain protein A; symbol=SHA; Alias=ATSHA, ARABIDOPSIS THALIANA SH2 DOMAIN PROTEIN A, STATLA, STAT-TYPE LINKER-SH2 DOMAIN FACTOR A; full_name=SH2 domain protein A; curator_summary=Encodes a protein that contains an SH2 domain. It can pull down a 120-kD tyrosine-phosphorylated protein in vitro. It is predicted to act as a transcription factor.; computational_description=SH2 domain protein A (SHA)%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%2C signal transducer activity%3B INVOLVED IN: signal transduction%2C regulation of transcription%2C DNA-dependent%3B LOCATED IN: nucleus%3B EXPRESSED IN: 11 plant structures%3B EXPRESSED DURING: 4 anthesis%2C C globular stage%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: SH2 motif (InterPro:IPR000980)%2C STAT transcription factor%2C core (InterPro:IPR001217)%2C Concanavalin A-like lectin/glucanase (InterPro:IPR008985)%3B BEST Arabidopsis thaliana protein match is: SH2 domain protein B (TAIR:AT1G78540.1)%3B Has 341 Blast hits to 335 proteins in 60 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 258%3B Fungi - 0%3B Plants - 45%3B Viruses - 0%3B Other Eukaryotes - 38 (source: NCBI BLink).; Dbxref=PMID:15010618, PMID:15073273, PMID:15063865, PMID:20736450, locus:2020377; locus_type=protein_coding
AT1G05283.1	chr1:005828817	0.0	C/5828817-5829035	AT1G05283.1 lnc_RNA AT1G05283 ID=AT1G05283.1; Parent=AT1G05283; Name=AT1G05283.1; locus_type=long_noncoding_rna
AT1G17050.1	chr1:005829289	0.0	W/5829289-5829508,5829847-5829971,5830051-5830178,5830274-5830377,5830459-5830586,5830667-5831215	AT1G17050.1 CDS AT1G17050 ID=AT1G17050.1; Parent=AT1G17050; Name=AT1G17050.1; Note=solanesyl diphosphate synthase 2; curator_summary=Encodes one of the two paralogous solanesyl diphosphate synthases - SPS1 (At1g78510) and SPS2 (At1g17050) - that assemble the side-chain of plastoquinone-9 in plastids.; conf_class=2; symbol=SPS2; Alias=AtSPS2; full_name=solanesyl diphosphate synthase 2; computational_description=solanesyl diphosphate synthase 2 (SPS2)%3B FUNCTIONS IN: trans-octaprenyltranstransferase activity%3B INVOLVED IN: ubiquinone biosynthetic process%3B LOCATED IN: chloroplast%2C plastid%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Solanesyl diphosphate synthase (InterPro:IPR014120)%2C Polyprenyl synthetase-related (InterPro:IPR017446)%2C Terpenoid synthase (InterPro:IPR008949)%2C Polyprenyl synthetase (InterPro:IPR000092)%3B BEST Arabidopsis thaliana protein match is: solanesyl diphosphate synthase 1 (TAIR:AT1G78510.1)%3B Has 16766 Blast hits to 16738 proteins in 2950 species: Archae - 341%3B Bacteria - 9538%3B Metazoa - 427%3B Fungi - 613%3B Plants - 416%3B Viruses - 0%3B Other Eukaryotes - 5431 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12777052, PMID:16460663, PMID:18831797, PMID:23913686, locus:2020362; locus_type=protein_coding
AT1G17065.1	chr1:005832303	0.0	W/5832303-5832607,5832661-5832728,5832807-5833003,5833037-5833070,5833285-5833388,5833816-5833858,5834020-5834030	AT1G17065.1 CDS AT1G17065 ID=AT1G17065.1; Parent=AT1G17065; Name=AT1G17065.1; Note=hypothetical protein; locus_type=protein_coding
AT1G17060.1	chr1:005832989	0.0	C/5832989-5833184,5833267-5833511,5834295-5834512,5834973-5835255	AT1G17060.1 CDS AT1G17060 ID=AT1G17060.1; Parent=AT1G17060; Name=AT1G17060.1; Note=cytochrome p450 72c1; curator_summary=Encodes a protein with similarity to other cytochrome P450's and is a homolog of BAS1. Over expression causes a dwarf phenotype resembling brassinolide resistant mutants. Double mutant analysis of sob7/bas1 loss of function mutants suggests these genes have redundant functions in light responsiveness. SOB7 may function in metabolizing brassinolides. Expressed in leaf%2C root%2C stem and silique but expression highest in flower and cauline leaves. Dominant overexpressing plants have dwarf phenotype%2C short siliques/seeds%2C rounded dark green leaves and short hypocotyls in light and dark. Loss of function alleles result in plants with long hypocotyls.; conf_class=6; symbol=CYP72C1; Alias=CHI2, CHIBI 2, SHK1, SHRINK 1, SOB7, SUPPRESSOR OF PHYB-4 7; full_name=cytochrome p450 72c1; computational_description=cytochrome p450 72c1 (CYP72C1)%3B FUNCTIONS IN: electron carrier activity%2C monooxygenase activity%2C iron ion binding%2C oxygen binding%2C heme binding%3B INVOLVED IN: response to light stimulus%2C brassinosteroid metabolic process%2C unidimensional cell growth%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 10 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128)%2C Cytochrome P450%2C E-class%2C group IV (InterPro:IPR002403)%2C Cytochrome P450%2C conserved site (InterPro:IPR017972)%3B BEST Arabidopsis thaliana protein match is: cytochrome P450%2C family 72%2C subfamily A%2C polypeptide 15 (TAIR:AT3G14690.1)%3B Has 27908 Blast hits to 27397 proteins in 1448 species: Archae - 65%3B Bacteria - 2698%3B Metazoa - 11276%3B Fungi - 5119%3B Plants - 7743%3B Viruses - 3%3B Other Eukaryotes - 1004 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:15086809, PMID:15689343, PMID:15773851, PMID:15773850, PMID:17521414, PMID:20396969, PMID:20669042, PMID:21418356, PMID:22995285, PMID:23275881, PMID:23893742, locus:2020347; locus_type=protein_coding
AT1G05287.1	chr1:005837499	0.0	C/5837499-5837891	AT1G05287.1 antisense_lncRNA AT1G05287 ID=AT1G05287.1; Parent=AT1G05287; Name=AT1G05287.1; description=Natural antisense transcript overlaps with AT1G17070; Note=Natural antisense transcript overlaps with AT1G17070; locus_type=antisense_long_noncoding_rna
AT1G17070.1	chr1:005837653	0.0	W/5837653-5840202	AT1G17070.1 CDS AT1G17070 ID=AT1G17070.1; Parent=AT1G17070; Name=AT1G17070.1; Note=GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain-containing protein; conf_class=1; symbol=STIPL1; Alias=AtNTR1; full_name=SPLICEOSOMAL TIMEKEEPER LOCUS1; computational_description=GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain%3B FUNCTIONS IN: nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: intracellular%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Tuftelin interacting protein N-terminal (InterPro:IPR022159)%2C D111/G-patch (InterPro:IPR000467)%3B BEST Arabidopsis thaliana protein match is: GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (TAIR:AT2G42330.2)%3B Has 1264 Blast hits to 1232 proteins in 250 species: Archae - 2%3B Bacteria - 6%3B Metazoa - 735%3B Fungi - 146%3B Plants - 190%3B Viruses - 1%3B Other Eukaryotes - 184 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15689343, PMID:15773850, PMID:18775970, PMID:20687615, PMID:23110899, PMID:25568310, locus:2020332; locus_type=protein_coding
AT1G17080.1	chr1:005840458	0.0	C/5840458-5840517,5840623-5840740,5840833-5840911,5841329-5841536	AT1G17080.1 CDS AT1G17080 ID=AT1G17080.1; Parent=AT1G17080; Name=AT1G17080.1; Note=Ribosomal protein L18ae family; conf_class=3; computational_description=Ribosomal protein L18ae family%3B BEST Arabidopsis thaliana protein match is: Ribosomal protein L18ae family (TAIR:AT1G53560.1)%3B Has 119 Blast hits to 119 proteins in 14 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 119%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18650403, PMID:18775970, locus:2020317; locus_type=protein_coding
AT1G17090.1	chr1:005842464	0.0	C/5842464-5842745	AT1G17090.1 CDS AT1G17090 ID=AT1G17090.1; Parent=AT1G17090; Name=AT1G17090.1; Note=transmembrane protein; conf_class=1; computational_description=unknown protein%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 7 growth stages%3B Has 5 Blast hits to 5 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 5%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12372144, PMID:15923337, PMID:16258011, locus:2035479; locus_type=protein_coding
AT1G17090.2	chr1:005842464	0.0	C/5842464-5842745	AT1G17090.2 CDS AT1G17090 ID=AT1G17090.2; Parent=AT1G17090; Name=AT1G17090.2; Note=transmembrane protein; conf_class=1; computational_description=unknown protein%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 7 growth stages%3B Has 5 Blast hits to 5 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 5%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12372144, PMID:15923337, PMID:16258011, locus:2035479; locus_type=protein_coding
AT1G17090.3	chr1:005842464	0.0	C/5842464-5842745	AT1G17090.3 CDS AT1G17090 ID=AT1G17090.3; Parent=AT1G17090; Name=AT1G17090.3; Note=transmembrane protein; Dbxref=PMID:12372144, PMID:15923337, PMID:16258011, locus:2035479; computational_description=unknown protein%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 7 growth stages%3B Has 5 Blast hits to 5 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 5%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; locus_type=protein_coding
AT1G17090.4	chr1:005842464	0.0	C/5842464-5842745	AT1G17090.4 CDS AT1G17090 ID=AT1G17090.4; Parent=AT1G17090; Name=AT1G17090.4; Note=transmembrane protein; Dbxref=PMID:12372144, PMID:15923337, PMID:16258011, locus:2035479; computational_description=unknown protein%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 7 growth stages%3B Has 5 Blast hits to 5 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 5%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; locus_type=protein_coding
AT1G17090.5	chr1:005842464	0.0	C/5842464-5842745	AT1G17090.5 CDS AT1G17090 ID=AT1G17090.5; Parent=AT1G17090; Name=AT1G17090.5; Note=transmembrane protein; Dbxref=PMID:12372144, PMID:15923337, PMID:16258011, locus:2035479; computational_description=unknown protein%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 7 growth stages%3B Has 5 Blast hits to 5 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 5%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; locus_type=protein_coding
AT1G17100.1	chr1:005844766	0.0	W/5844766-5845034,5845110-5845539	AT1G17100.1 CDS AT1G17100 ID=AT1G17100.1; Parent=AT1G17100; Name=AT1G17100.1; Note=SOUL heme-binding family protein; conf_class=2; symbol=HBP1; Alias=AtHBP1; full_name=haem-binding protein 1; computational_description=SOUL heme-binding family protein%3B FUNCTIONS IN: binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%2C vacuole%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: SOUL haem-binding protein (InterPro:IPR006917)%3B BEST Arabidopsis thaliana protein match is: SOUL heme-binding family protein (TAIR:AT1G78450.1)%3B Has 1318 Blast hits to 1294 proteins in 131 species: Archae - 15%3B Bacteria - 114%3B Metazoa - 250%3B Fungi - 0%3B Plants - 206%3B Viruses - 0%3B Other Eukaryotes - 733 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16297073, PMID:16500996, PMID:16621846, PMID:17337630, PMID:18650403, PMID:20118269, PMID:22991161, locus:2020307; locus_type=protein_coding
AT1G17110.1	chr1:005845816	0.0	C/5845816-5846362,5846449-5846510,5846592-5846804,5846905-5846989,5847070-5847227,5847317-5847440,5847557-5847719,5847810-5847895,5848031-5848119,5848212-5848339,5848414-5848512,5848603-5848780,5848906-5849299,5849441-5849889	AT1G17110.1 CDS AT1G17110 ID=AT1G17110.1; Parent=AT1G17110; Name=AT1G17110.1; Note=ubiquitin-specific protease 15; curator_summary=Encodes a ubiquitin-specific protease%2C and its activity has been confirmed in an in vitro assay. ubp15 mutants have defects in cell proliferation%2C and the associated processes of leaf%2C root%2C stem%2C flower%2C and silique development. UBP15 can be found in the nucleus and cytoplasm in transient assays. Though UBP15 is expressed in many tissues%2C UBP15 transcript levels are higher in rosette leaves and inflorescences than in other parts of the plant.; conf_class=2; symbol=UBP15; full_name=ubiquitin-specific protease 15; computational_description=ubiquitin-specific protease 15 (UBP15)%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C MYND-type (InterPro:IPR002893)%2C Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2%2C conserved site (InterPro:IPR018200)%2C Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394)%3B BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 18 (TAIR:AT4G31670.1)%3B Has 7942 Blast hits to 7177 proteins in 265 species: Archae - 0%3B Bacteria - 54%3B Metazoa - 4137%3B Fungi - 1242%3B Plants - 1075%3B Viruses - 7%3B Other Eukaryotes - 1427 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11115897, PMID:18485060, PMID:20736450, PMID:24585836, locus:2020412; locus_type=protein_coding
AT1G17110.2	chr1:005845816	0.0	C/5845816-5846362,5846449-5846510,5846592-5846804,5846905-5846989,5847070-5847227,5847317-5847440,5847557-5847719,5847810-5847895,5848031-5848119,5848200-5848339,5848414-5848512,5848603-5848780,5848906-5849299,5849441-5849889	AT1G17110.2 CDS AT1G17110 ID=AT1G17110.2; Parent=AT1G17110; Name=AT1G17110.2; Note=ubiquitin-specific protease 15; curator_summary=Encodes a ubiquitin-specific protease%2C and its activity has been confirmed in an in vitro assay. ubp15 mutants have defects in cell proliferation%2C and the associated processes of leaf%2C root%2C stem%2C flower%2C and silique development. UBP15 can be found in the nucleus and cytoplasm in transient assays. Though UBP15 is expressed in many tissues%2C UBP15 transcript levels are higher in rosette leaves and inflorescences than in other parts of the plant.; conf_class=4; symbol=UBP15; full_name=ubiquitin-specific protease 15; computational_description=ubiquitin-specific protease 15 (UBP15)%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C MYND-type (InterPro:IPR002893)%2C Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2%2C conserved site (InterPro:IPR018200)%2C Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394)%3B BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 18 (TAIR:AT4G31670.1)%3B Has 7942 Blast hits to 7177 proteins in 265 species: Archae - 0%3B Bacteria - 54%3B Metazoa - 4137%3B Fungi - 1242%3B Plants - 1075%3B Viruses - 7%3B Other Eukaryotes - 1427 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:11115897, PMID:18485060, PMID:20736450, PMID:24585836, locus:2020412; locus_type=protein_coding
AT1G17110.3	chr1:005845816	0.0	C/5845816-5846362,5846449-5846510,5846592-5846804,5846905-5846989,5847070-5847227,5847317-5847440,5847557-5847719,5847810-5847895,5848031-5848119,5848212-5848339,5848414-5848512,5848603-5848780,5848906-5849299,5849441-5849889	AT1G17110.3 CDS AT1G17110 ID=AT1G17110.3; Parent=AT1G17110; Name=AT1G17110.3; Note=ubiquitin-specific protease 15; symbol=UBP15; full_name=ubiquitin-specific protease 15; Dbxref=PMID:11115897, PMID:18485060, PMID:20736450, PMID:24585836, locus:2020412; curator_summary=Encodes a ubiquitin-specific protease%2C and its activity has been confirmed in an in vitro assay. ubp15 mutants have defects in cell proliferation%2C and the associated processes of leaf%2C root%2C stem%2C flower%2C and silique development. UBP15 can be found in the nucleus and cytoplasm in transient assays. Though UBP15 is expressed in many tissues%2C UBP15 transcript levels are higher in rosette leaves and inflorescences than in other parts of the plant.; computational_description=ubiquitin-specific protease 15 (UBP15)%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C MYND-type (InterPro:IPR002893)%2C Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2%2C conserved site (InterPro:IPR018200)%2C Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394)%3B BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 18 (TAIR:AT4G31670.1)%3B Has 7942 Blast hits to 7177 proteins in 265 species: Archae - 0%3B Bacteria - 54%3B Metazoa - 4137%3B Fungi - 1242%3B Plants - 1075%3B Viruses - 7%3B Other Eukaryotes - 1427 (source: NCBI BLink).; locus_type=protein_coding
AT1G17120.1	chr1:005851964	0.0	W/5851964-5853736	AT1G17120.1 CDS AT1G17120 ID=AT1G17120.1; Parent=AT1G17120; Name=AT1G17120.1; Note=cationic amino acid transporter 8; curator_summary=Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Does not mediate efficient uptake of basic amino acids in yeast or Xenopus systems but can transport neutral and acidic amino acid analogs.; conf_class=1; symbol=CAT8; full_name=cationic amino acid transporter 8; computational_description=cationic amino acid transporter 8 (CAT8)%3B FUNCTIONS IN: cationic amino acid transmembrane transporter activity%3B INVOLVED IN: transport%2C amino acid transport%2C transmembrane transport%3B LOCATED IN: intracellular membrane-bounded organelle%2C plasma membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Cationic amino acid transporter (InterPro:IPR015606)%2C Amino acid/polyamine transporter I (InterPro:IPR002293)%2C Amino acid permease domain (InterPro:IPR004841)%3B BEST Arabidopsis thaliana protein match is: cationic amino acid transporter 5 (TAIR:AT2G34960.1)%3B Has 31846 Blast hits to 31753 proteins in 2313 species: Archae - 496%3B Bacteria - 26086%3B Metazoa - 1876%3B Fungi - 1926%3B Plants - 406%3B Viruses - 0%3B Other Eukaryotes - 1056 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15377779, PMID:15890746, PMID:20111724, PMID:20736450, locus:2020387; locus_type=protein_coding
AT1G17130.1	chr1:005854264	0.0	W/5854264-5854461,5854886-5855035,5855138-5855272,5855415-5855480,5855731-5855781,5855878-5856003,5856110-5856173,5856267-5856472	AT1G17130.1 CDS AT1G17130 ID=AT1G17130.1; Parent=AT1G17130; Name=AT1G17130.1; Note=coiled-coil protein (DUF572); conf_class=2; computational_description=Family of unknown function (DUF572) %3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF572 (InterPro:IPR007590)%3B BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF572) (TAIR:AT2G32050.1)%3B Has 1377 Blast hits to 1314 proteins in 254 species: Archae - 0%3B Bacteria - 51%3B Metazoa - 442%3B Fungi - 351%3B Plants - 150%3B Viruses - 5%3B Other Eukaryotes - 378 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15923328, PMID:18650403, PMID:18775970, PMID:18923020, locus:2020367; locus_type=protein_coding
AT1G17130.2	chr1:005854264	0.0	W/5854264-5854461,5854865-5855035,5855138-5855272,5855415-5855480,5855731-5855781,5855878-5856003,5856110-5856173,5856267-5856472	AT1G17130.2 CDS AT1G17130 ID=AT1G17130.2; Parent=AT1G17130; Name=AT1G17130.2; Note=coiled-coil protein (DUF572); conf_class=2; computational_description=Family of unknown function (DUF572) %3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF572 (InterPro:IPR007590)%3B BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF572) (TAIR:AT2G32050.1)%3B Has 1377 Blast hits to 1314 proteins in 254 species: Archae - 0%3B Bacteria - 51%3B Metazoa - 442%3B Fungi - 351%3B Plants - 150%3B Viruses - 5%3B Other Eukaryotes - 378 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15923328, PMID:18650403, PMID:18775970, PMID:18923020, locus:2020367; locus_type=protein_coding
AT1G05293.1	chr1:005855473	0.0	C/5855473-5855751	AT1G05293.1 antisense_lncRNA AT1G05293 ID=AT1G05293.1; Parent=AT1G05293; Name=AT1G05293.1; description=Natural antisense transcript overlaps with AT1G17130; Note=Natural antisense transcript overlaps with AT1G17130; locus_type=antisense_long_noncoding_rna
AT1G17140.1	chr1:005856740	0.0	C/5856740-5857760,5857848-5857861	AT1G17140.1 CDS AT1G17140 ID=AT1G17140.1; Parent=AT1G17140; Name=AT1G17140.1; Note=interactor of constitutive active rops 1; curator_summary=Encodes a ROP/RAC effector%2C designated interactor of constitutive active ROPs 1 (ICR1)%2C that interacts with GTP-bound ROPs. ICR1 is a scaffold mediating formation of protein complexes that are required for cell polarity. ICR1 is comprised of coiled-coil domains and forms complexes with itself and the exocyst vesicle-tethering complex subunit SEC3.; conf_class=2; symbol=ICR1; Alias=RIP1, ROP INTERACTIVE PARTNER 1; full_name=interactor of constitutive active rops 1; computational_description=interactor of constitutive active rops 1 (ICR1)%3B BEST Arabidopsis thaliana protein match is: ROP interactive partner 2 (TAIR:AT1G78430.1)%3B Has 53861 Blast hits to 29615 proteins in 2229 species: Archae - 901%3B Bacteria - 7093%3B Metazoa - 25838%3B Fungi - 5211%3B Plants - 3173%3B Viruses - 136%3B Other Eukaryotes - 11509 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17493810, PMID:19825600, PMID:20736450, PMID:20098722, PMID:20832900, locus:2020342; locus_type=protein_coding
AT1G17140.2	chr1:005856740	0.0	C/5856740-5857760,5857848-5857861	AT1G17140.2 CDS AT1G17140 ID=AT1G17140.2; Parent=AT1G17140; Name=AT1G17140.2; Note=interactor of constitutive active rops 1; curator_summary=Encodes a ROP/RAC effector%2C designated interactor of constitutive active ROPs 1 (ICR1)%2C that interacts with GTP-bound ROPs. ICR1 is a scaffold mediating formation of protein complexes that are required for cell polarity. ICR1 is comprised of coiled-coil domains and forms complexes with itself and the exocyst vesicle-tethering complex subunit SEC3.; conf_class=2; symbol=ICR1; Alias=RIP1, ROP INTERACTIVE PARTNER 1; full_name=interactor of constitutive active rops 1; computational_description=interactor of constitutive active rops 1 (ICR1)%3B BEST Arabidopsis thaliana protein match is: ROP interactive partner 2 (TAIR:AT1G78430.1)%3B Has 53861 Blast hits to 29615 proteins in 2229 species: Archae - 901%3B Bacteria - 7093%3B Metazoa - 25838%3B Fungi - 5211%3B Plants - 3173%3B Viruses - 136%3B Other Eukaryotes - 11509 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17493810, PMID:19825600, PMID:20736450, PMID:20098722, PMID:20832900, locus:2020342; locus_type=protein_coding
AT1G05297.1	chr1:005857935	0.0	W/5857935-5858271	AT1G05297.1 antisense_lncRNA AT1G05297 ID=AT1G05297.1; Parent=AT1G05297; Name=AT1G05297.1; description=Natural antisense transcript overlaps with AT1G17140; Note=Natural antisense transcript overlaps with AT1G17140; locus_type=antisense_long_noncoding_rna
AT1G17145.1	chr1:005860351	0.0	C/5860351-5860689,5860772-5860838,5861173-5861239,5861336-5861486,5861585-5861666,5861756-5861801,5861890-5861941,5862038-5862241	AT1G17145.1 CDS AT1G17145 ID=AT1G17145.1; Parent=AT1G17145; Name=AT1G17145.1; Note=RING/U-box superfamily protein; conf_class=2; computational_description=RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G78420.2)%3B Has 249 Blast hits to 247 proteins in 115 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 7%3B Fungi - 148%3B Plants - 77%3B Viruses - 0%3B Other Eukaryotes - 17 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, locus:505006125; locus_type=protein_coding
AT1G17145.2	chr1:005860351	0.0	C/5860351-5860490,5860596-5860689,5860772-5860838,5861173-5861239,5861336-5861486,5861585-5861666,5861756-5861801,5861890-5861941,5862038-5862241	AT1G17145.2 CDS AT1G17145 ID=AT1G17145.2; Parent=AT1G17145; Name=AT1G17145.2; Note=RING/U-box superfamily protein; computational_description=RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G78420.2)%3B Has 249 Blast hits to 247 proteins in 115 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 7%3B Fungi - 148%3B Plants - 77%3B Viruses - 0%3B Other Eukaryotes - 17 (source: NCBI BLink).; Dbxref=PMID:18775970, locus:505006125; locus_type=protein_coding
AT1TE18950	chr1:005862802	0.0	C/5862802-5862941	AT1TE18950 transposable_element AT1TE18950 ID=AT1TE18950; Name=AT1TE18950; Alias=VANDAL8
AT1TE18955	chr1:005862942	0.0	W/5862942-5863537	AT1TE18955 transposable_element AT1TE18955 ID=AT1TE18955; Name=AT1TE18955; Alias=ATREP2
AT1TE18960	chr1:005863538	0.0	W/5863538-5863602	AT1TE18960 transposable_element AT1TE18960 ID=AT1TE18960; Name=AT1TE18960; Alias=ATREP3
AT1G17147.1	chr1:005863654	0.0	C/5863654-5863950	AT1G17147.1 CDS AT1G17147 ID=AT1G17147.1; Parent=AT1G17147; Name=AT1G17147.1; Note=VQ motif-containing protein; conf_class=1; computational_description=VQ motif-containing protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889)%3B BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT1G78410.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:4515102541; locus_type=protein_coding
AT1G17150.1	chr1:005865707	0.0	W/5865707-5865856,5866190-5866498,5866658-5867176,5867265-5867495	AT1G17150.1 CDS AT1G17150 ID=AT1G17150.1; Parent=AT1G17150; Name=AT1G17150.1; Note=Pectin lyase-like superfamily protein; conf_class=4; computational_description=Pectin lyase-like superfamily protein%3B FUNCTIONS IN: polygalacturonase activity%3B INVOLVED IN: carbohydrate metabolic process%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050)%2C Pectin lyase fold (InterPro:IPR012334)%2C Glycoside hydrolase%2C family 28 (InterPro:IPR000743)%3B BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G43080.1)%3B Has 3925 Blast hits to 3904 proteins in 469 species: Archae - 4%3B Bacteria - 1051%3B Metazoa - 14%3B Fungi - 1254%3B Plants - 1494%3B Viruses - 0%3B Other Eukaryotes - 108 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:12972053, PMID:17010199, PMID:20687615, PMID:23056537, locus:2020352; locus_type=protein_coding
AT1G17160.1	chr1:005867678	0.0	W/5867678-5868340,5868534-5868719,5868845-5869040,5869121-5869215	AT1G17160.1 CDS AT1G17160 ID=AT1G17160.1; Parent=AT1G17160; Name=AT1G17160.1; Note=pfkB-like carbohydrate kinase family protein; conf_class=2; computational_description=pfkB-like carbohydrate kinase family protein%3B FUNCTIONS IN: kinase activity%2C ribokinase activity%3B INVOLVED IN: D-ribose metabolic process%2C D-ribose catabolic process%3B LOCATED IN: chloroplast%2C chloroplast stroma%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611)%2C Ribokinase (InterPro:IPR002139)%2C Carbohydrate/puine kinase%2C PfkB%2C conserved site (InterPro:IPR002173)%3B BEST Arabidopsis thaliana protein match is: pfkB-like carbohydrate kinase family protein (TAIR:AT1G06030.1)%3B Has 24314 Blast hits to 24305 proteins in 2661 species: Archae - 422%3B Bacteria - 18834%3B Metazoa - 425%3B Fungi - 293%3B Plants - 520%3B Viruses - 0%3B Other Eukaryotes - 3820 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:21477822, locus:2020337; locus_type=protein_coding
AT1G17160.2	chr1:005867678	0.0	W/5867678-5868340,5868534-5868719,5868845-5869040,5869153-5869175	AT1G17160.2 CDS AT1G17160 ID=AT1G17160.2; Parent=AT1G17160; Name=AT1G17160.2; Note=pfkB-like carbohydrate kinase family protein; conf_class=3; computational_description=pfkB-like carbohydrate kinase family protein%3B FUNCTIONS IN: kinase activity%2C ribokinase activity%3B INVOLVED IN: D-ribose metabolic process%2C D-ribose catabolic process%3B LOCATED IN: chloroplast%2C chloroplast stroma%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611)%2C Ribokinase (InterPro:IPR002139)%2C Carbohydrate/puine kinase%2C PfkB%2C conserved site (InterPro:IPR002173)%3B BEST Arabidopsis thaliana protein match is: pfkB-like carbohydrate kinase family protein (TAIR:AT1G06030.1)%3B Has 24314 Blast hits to 24305 proteins in 2661 species: Archae - 422%3B Bacteria - 18834%3B Metazoa - 425%3B Fungi - 293%3B Plants - 520%3B Viruses - 0%3B Other Eukaryotes - 3820 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:21477822, locus:2020337; locus_type=protein_coding
AT1G17170.1	chr1:005869895	0.0	W/5869895-5870209,5870350-5870691	AT1G17170.1 CDS AT1G17170 ID=AT1G17170.1; Parent=AT1G17170; Name=AT1G17170.1; Note=glutathione S-transferase TAU 24; curator_summary=Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).; conf_class=2; symbol=GSTU24; Alias=ATGSTU24, glutathione S-transferase TAU 24, GST, Arabidopsis thaliana Glutathione S-transferase (class tau) 24; full_name=glutathione S-transferase TAU 24; computational_description=glutathione S-transferase TAU 24 (GSTU24)%3B FUNCTIONS IN: glutathione transferase activity%2C glutathione binding%3B INVOLVED IN: response to cyclopentenone%2C toxin catabolic process%3B LOCATED IN: cytoplasm%3B EXPRESSED IN: 15 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335)%2C Glutathione S-transferase%2C C-terminal (InterPro:IPR004046)%2C Glutathione S-transferase%2C C-terminal-like (InterPro:IPR010987)%2C Glutathione S-transferase/chloride channel%2C C-terminal (InterPro:IPR017933)%2C Glutathione S-transferase%2C N-terminal (InterPro:IPR004045)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B BEST Arabidopsis thaliana protein match is: glutathione S-transferase TAU 25 (TAIR:AT1G17180.1)%3B Has 6259 Blast hits to 6243 proteins in 1151 species: Archae - 0%3B Bacteria - 2699%3B Metazoa - 624%3B Fungi - 140%3B Plants - 2013%3B Viruses - 0%3B Other Eukaryotes - 783 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12090627, PMID:15923336, PMID:17368510, PMID:18334669, PMID:18650403, PMID:19174456, PMID:19324677, PMID:20031254, PMID:20180920, PMID:22639590, PMID:24733884, locus:2020322; locus_type=protein_coding
AT1G17180.1	chr1:005872208	0.0	W/5872208-5872522,5872608-5872958	AT1G17180.1 CDS AT1G17180 ID=AT1G17180.1; Parent=AT1G17180; Name=AT1G17180.1; Note=glutathione S-transferase TAU 25; curator_summary=Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).; conf_class=2; symbol=GSTU25; Alias=ATGSTU25, glutathione S-transferase TAU 25; full_name=glutathione S-transferase TAU 25; computational_description=glutathione S-transferase TAU 25 (GSTU25)%3B CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335)%2C Glutathione S-transferase%2C C-terminal (InterPro:IPR004046)%2C Glutathione S-transferase%2C C-terminal-like (InterPro:IPR010987)%2C Glutathione S-transferase/chloride channel%2C C-terminal (InterPro:IPR017933)%2C Glutathione S-transferase%2C N-terminal (InterPro:IPR004045)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B BEST Arabidopsis thaliana protein match is: glutathione S-transferase TAU 24 (TAIR:AT1G17170.1)%3B Has 6324 Blast hits to 6297 proteins in 1135 species: Archae - 0%3B Bacteria - 2853%3B Metazoa - 581%3B Fungi - 157%3B Plants - 1982%3B Viruses - 0%3B Other Eukaryotes - 751 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12090627, PMID:12969430, PMID:15824099, PMID:16081496, PMID:16941219, PMID:18055587, PMID:18334669, PMID:18702669, PMID:18682547, PMID:19174456, PMID:20736450, PMID:24733884, locus:2020312; locus_type=protein_coding
AT1G17190.1	chr1:005875452	0.0	W/5875452-5875769,5876031-5876375	AT1G17190.1 CDS AT1G17190 ID=AT1G17190.1; Parent=AT1G17190; Name=AT1G17190.1; Note=glutathione S-transferase tau 26; curator_summary=Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).; conf_class=2; symbol=GSTU26; Alias=ATGSTU26, glutathione S-transferase tau 26; full_name=glutathione S-transferase tau 26; computational_description=glutathione S-transferase tau 26 (GSTU26)%3B CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335)%2C Glutathione S-transferase%2C C-terminal (InterPro:IPR004046)%2C Glutathione S-transferase%2C C-terminal-like (InterPro:IPR010987)%2C Glutathione S-transferase/chloride channel%2C C-terminal (InterPro:IPR017933)%2C Glutathione S-transferase%2C N-terminal (InterPro:IPR004045)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B BEST Arabidopsis thaliana protein match is: glutathione S-transferase TAU 25 (TAIR:AT1G17180.1)%3B Has 5496 Blast hits to 5481 proteins in 1084 species: Archae - 0%3B Bacteria - 2439%3B Metazoa - 409%3B Fungi - 139%3B Plants - 1934%3B Viruses - 0%3B Other Eukaryotes - 575 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12090627, PMID:15086809, PMID:15356332, PMID:15695462, PMID:16297073, PMID:16284313, PMID:16538523, PMID:16920880, PMID:17061125, PMID:17473866, PMID:17637675, PMID:19174456, PMID:20736450, locus:2020302; locus_type=protein_coding
AT1G17200.1	chr1:005878493	0.0	W/5878493-5878710,5879397-5879517,5879596-5879871	AT1G17200.1 CDS AT1G17200 ID=AT1G17200.1; Parent=AT1G17200; Name=AT1G17200.1; Note=Uncharacterized protein family (UPF0497); conf_class=2; Alias=CASPL2A1, CASP-like protein 2A1; computational_description=Uncharacterised protein family (UPF0497)%3B CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497%2C trans-membrane plant (InterPro:IPR006702)%2C Uncharacterised protein family UPF0497%2C trans-membrane plant subgroup (InterPro:IPR006459)%3B BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT3G14380.1)%3B Has 681 Blast hits to 681 proteins in 21 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 681%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15010618, PMID:18650403, PMID:19617588, PMID:20351290, PMID:24920445, locus:2020297; locus_type=protein_coding
AT1G17200.2	chr1:005879461	0.0	W/5879461-5879517,5879596-5879871	AT1G17200.2 CDS AT1G17200 ID=AT1G17200.2; Parent=AT1G17200; Name=AT1G17200.2; Note=Uncharacterized protein family (UPF0497); conf_class=3; Alias=CASPL2A1, CASP-like protein 2A1; computational_description=Uncharacterised protein family (UPF0497)%3B CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497%2C trans-membrane plant (InterPro:IPR006702)%2C Uncharacterised protein family UPF0497%2C trans-membrane plant subgroup (InterPro:IPR006459)%3B BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT3G14380.1)%3B Has 681 Blast hits to 681 proteins in 21 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 681%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15010618, PMID:18650403, PMID:19617588, PMID:20351290, PMID:24920445, locus:2020297; locus_type=protein_coding
AT1G17210.1	chr1:005880502	0.0	C/5880502-5880573,5880666-5880916,5881007-5882780,5882861-5883195,5883510-5883636,5884129-5884294,5884506-5884657	AT1G17210.1 CDS AT1G17210 ID=AT1G17210.1; Parent=AT1G17210; Name=AT1G17210.1; Note=IAP-like protein 1; conf_class=2; symbol=ILP1; Alias=ATILP1, ARABIDOPSIS IAP-LIKE PROTEIN; full_name=IAP-like protein 1; computational_description=IAP-like protein 1 (ILP1)%3B FUNCTIONS IN: zinc ion binding%3B LOCATED IN: cytosol%2C nucleus%2C phragmoplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C C3HC-like (InterPro:IPR012935)%2C Proteinase inhibitor I32%2C inhibitor of apoptosis (InterPro:IPR001370)%3B BEST Arabidopsis thaliana protein match is: C3HC zinc finger-like (TAIR:AT1G48950.1)%3B Has 488 Blast hits to 287 proteins in 104 species: Archae - 2%3B Bacteria - 11%3B Metazoa - 108%3B Fungi - 61%3B Plants - 97%3B Viruses - 0%3B Other Eukaryotes - 209 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11826309, PMID:14576160, PMID:15469496, PMID:15909109, PMID:18433157, locus:2020437; locus_type=protein_coding
AT1G17220.1	chr1:005885383	0.0	W/5885383-5886924,5887046-5887078,5887261-5887374,5887544-5887693,5887764-5887862,5887952-5888014,5888297-5888452,5888553-5888618,5888792-5889028,5889131-5889406,5889669-5889857,5890010-5890165	AT1G17220.1 CDS AT1G17220 ID=AT1G17220.1; Parent=AT1G17220; Name=AT1G17220.1; Note=Translation initiation factor 2%2C small GTP-binding protein; curator_summary=Encodes a chloroplast localized protein with similarity to translation initiation factor 2. Can complement loss of INFB in E.coli suggesting FUG1 does function as a translation initiation factor in vivo. Identified as a suppressor of the leaf variegation mutant var2-6. Suppression is only seen in hypomorphs as complete loss of function alleles are embryo lethal.; conf_class=2; symbol=FUG1; full_name=fu-gaeri1; computational_description=fu-gaeri1 (FUG1)%3B FUNCTIONS IN: translation initiation factor activity%3B INVOLVED IN: translational initiation%3B LOCATED IN: chloroplast%2C chloroplast envelope%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Translation initiation factor IF-2%2C N-terminal (InterPro:IPR006847)%2C Small GTP-binding protein (InterPro:IPR005225)%2C Translation elongation factor EFTu/EF1A%2C domain 2 (InterPro:IPR004161)%2C Translation initiation factor 2 related (InterPro:IPR015760)%2C Initiation factor 2 (InterPro:IPR000178)%2C Protein synthesis factor%2C GTP-binding (InterPro:IPR000795)%2C Translation elongation/initiation factor/Ribosomal%2C beta-barrel (InterPro:IPR009000)%3B BEST Arabidopsis thaliana protein match is: Translation initiation factor 2%2C small GTP-binding protein (TAIR:AT4G11160.1)%3B Has 64472 Blast hits to 64325 proteins in 4737 species: Archae - 1215%3B Bacteria - 42273%3B Metazoa - 2198%3B Fungi - 2344%3B Plants - 1110%3B Viruses - 4%3B Other Eukaryotes - 15328 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12368493, PMID:14576160, PMID:15272873, PMID:17416734, PMID:18433503, PMID:18650403, PMID:19767385, locus:2020427; locus_type=protein_coding
AT1TE19050	chr1:005890525	0.0	W/5890525-5890604	AT1TE19050 transposable_element AT1TE19050 ID=AT1TE19050; Name=AT1TE19050; Alias=ATTIRX1A
AT1G17232.1	chr1:005890616	0.0	C/5890616-5895132	AT1G17232.1 antisense_lncRNA AT1G17232 ID=AT1G17232.1; Parent=AT1G17232; curator_summary=Potential natural antisense gene%2C locus overlaps with AT1G17230; Dbxref=locus:6530298140; Name=AT1G17232.1; description=Natural antisense transcript overlaps with AT1G17230; Note=Natural antisense transcript overlaps with AT1G17230; locus_type=antisense_long_noncoding_rna
AT1G17232.2	chr1:005891324	0.0	C/5891324-5894334	AT1G17232.2 antisense_lncRNA AT1G17232 ID=AT1G17232.2; Parent=AT1G17232; Name=AT1G17232.2; description=Natural antisense transcript overlaps with AT1G17230; curator_summary=Potential natural antisense gene%2C locus overlaps with AT1G17230; Note=Natural antisense transcript overlaps with AT1G17230; Dbxref=locus:6530298140; locus_type=antisense_long_noncoding_rna
AT1G17230.1	chr1:005891375	0.0	W/5891375-5894288,5894368-5894751,5894848-5894855	AT1G17230.1 CDS AT1G17230 ID=AT1G17230.1; Parent=AT1G17230; Name=AT1G17230.1; Note=Leucine-rich receptor-like protein kinase family protein; conf_class=2; computational_description=Leucine-rich receptor-like protein kinase family protein%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 11 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Leucine-rich repeat-containing N-terminal domain%2C type 2 (InterPro:IPR013210)%2C Leucine-rich repeat (InterPro:IPR001611)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Leucine-rich repeat%2C typical subtype (InterPro:IPR003591)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%3B BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G63930.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12671079, PMID:12972053, PMID:15310832, PMID:16367950, PMID:17470057, PMID:20179141, PMID:21477822, locus:2020417; locus_type=protein_coding
AT1G17230.2	chr1:005891375	0.0	W/5891375-5894288,5894368-5894855	AT1G17230.2 CDS AT1G17230 ID=AT1G17230.2; Parent=AT1G17230; Name=AT1G17230.2; Note=Leucine-rich receptor-like protein kinase family protein; computational_description=Leucine-rich receptor-like protein kinase family protein%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 11 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Leucine-rich repeat-containing N-terminal domain%2C type 2 (InterPro:IPR013210)%2C Leucine-rich repeat (InterPro:IPR001611)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Leucine-rich repeat%2C typical subtype (InterPro:IPR003591)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%3B BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G63930.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=PMID:12671079, PMID:12972053, PMID:15310832, PMID:16367950, PMID:17470057, PMID:20179141, PMID:21477822, locus:2020417; locus_type=protein_coding
AT1G17230.3	chr1:005891375	0.0	W/5891375-5894296	AT1G17230.3 CDS AT1G17230 ID=AT1G17230.3; Parent=AT1G17230; Name=AT1G17230.3; Note=Leucine-rich receptor-like protein kinase family protein; computational_description=Leucine-rich receptor-like protein kinase family protein%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 11 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Leucine-rich repeat-containing N-terminal domain%2C type 2 (InterPro:IPR013210)%2C Leucine-rich repeat (InterPro:IPR001611)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Leucine-rich repeat%2C typical subtype (InterPro:IPR003591)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%3B BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G63930.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=PMID:12671079, PMID:12972053, PMID:15310832, PMID:16367950, PMID:17470057, PMID:20179141, PMID:21477822, locus:2020417; locus_type=protein_coding
AT1G17235.1	chr1:005895351	0.0	W/5895351-5895710	AT1G17235.1 CDS AT1G17235 ID=AT1G17235.1; Parent=AT1G17235; Name=AT1G17235.1; Note=ROTUNDIFOLIA like 11; curator_summary=This gene is predicted to encode a small protein with a DVL domain found in the DVL / RTFL protein family. Over-expression analyses using truncated versions of a related family member%2C ROT4%2C suggest that the DVL / RTF domain is involved in regulating cell proliferation.; conf_class=8; symbol=RTFL11; full_name=ROTUNDIFOLIA like 11; computational_description=ROTUNDIFOLIA like 11 (RTFL11)%3B Has 17 Blast hits to 17 proteins in 5 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 17%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*; Dbxref=PMID:15125775, locus:4010713448; locus_type=protein_coding
AT1G17240.1	chr1:005896528	0.0	C/5896528-5898717	AT1G17240.1 CDS AT1G17240 ID=AT1G17240.1; Parent=AT1G17240; Name=AT1G17240.1; Note=receptor like protein 2; curator_summary=Encodes a CLAVATA2 (CLV2)-related gene. Complements the clv2 mutant when expressed under the control of the CLV2 promoter.; conf_class=1; symbol=RLP2; Alias=AtRLP2, receptor like protein 2; full_name=receptor like protein 2; computational_description=receptor like protein 2 (RLP2)%3B CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain%2C type 2 (InterPro:IPR013210)%2C Leucine-rich repeat (InterPro:IPR001611)%3B BEST Arabidopsis thaliana protein match is: Leucine-rich receptor-like protein kinase family protein (TAIR:AT1G72300.1)%3B Has 90767 Blast hits to 27052 proteins in 1087 species: Archae - 40%3B Bacteria - 7835%3B Metazoa - 18686%3B Fungi - 1120%3B Plants - 55519%3B Viruses - 2%3B Other Eukaryotes - 7565 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11751054, PMID:18434605, PMID:19897604, PMID:20139740, PMID:23717215, locus:2020402; locus_type=protein_coding
AT1G17240.2	chr1:005896528	0.0	C/5896528-5898732	AT1G17240.2 CDS AT1G17240 ID=AT1G17240.2; Parent=AT1G17240; Name=AT1G17240.2; Note=receptor like protein 2; symbol=RLP2; Alias=AtRLP2, receptor like protein 2; full_name=receptor like protein 2; curator_summary=Encodes a CLAVATA2 (CLV2)-related gene. Complements the clv2 mutant when expressed under the control of the CLV2 promoter.; computational_description=receptor like protein 2 (RLP2)%3B CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain%2C type 2 (InterPro:IPR013210)%2C Leucine-rich repeat (InterPro:IPR001611)%3B BEST Arabidopsis thaliana protein match is: Leucine-rich receptor-like protein kinase family protein (TAIR:AT1G72300.1)%3B Has 90767 Blast hits to 27052 proteins in 1087 species: Archae - 40%3B Bacteria - 7835%3B Metazoa - 18686%3B Fungi - 1120%3B Plants - 55519%3B Viruses - 2%3B Other Eukaryotes - 7565 (source: NCBI BLink).; Dbxref=PMID:11751054, PMID:18434605, PMID:19897604, PMID:20139740, PMID:23717215, locus:2020402; locus_type=protein_coding
AT1TE19080	chr1:005898868	0.0	C/5898868-5898933	AT1TE19080 transposable_element AT1TE19080 ID=AT1TE19080; Name=AT1TE19080; Alias=ATREP3
AT1TE19085	chr1:005898934	0.0	W/5898934-5899206	AT1TE19085 transposable_element AT1TE19085 ID=AT1TE19085; Name=AT1TE19085; Alias=ATTIRX1C
AT1TE19090	chr1:005899208	0.0	C/5899208-5899868	AT1TE19090 transposable_element AT1TE19090 ID=AT1TE19090; Name=AT1TE19090; Alias=ATREP2
AT1TE19095	chr1:005899869	0.0	W/5899869-5899901	AT1TE19095 transposable_element AT1TE19095 ID=AT1TE19095; Name=AT1TE19095; Alias=ATTIRX1C
AT1G17255.1	chr1:005899972	0.0	W/5899972-5903641	AT1G17255.1 antisense_lncRNA AT1G17255 ID=AT1G17255.1; Parent=AT1G17255; curator_summary=Potential natural antisense gene%2C locus overlaps with AT1G17250; Dbxref=locus:4515102542; Name=AT1G17255.1; description=Natural antisense transcript overlaps with AT1G17250; Note=Natural antisense transcript overlaps with AT1G17250; locus_type=antisense_long_noncoding_rna
AT1G17255.2	chr1:005899982	0.0	W/5899982-5903773	AT1G17255.2 antisense_lncRNA AT1G17255 ID=AT1G17255.2; Parent=AT1G17255; Name=AT1G17255.2; description=Natural antisense transcript overlaps with AT1G17250; curator_summary=Potential natural antisense gene%2C locus overlaps with AT1G17250; Note=Natural antisense transcript overlaps with AT1G17250; Dbxref=locus:4515102542; locus_type=antisense_long_noncoding_rna
AT1G17250.1	chr1:005901169	0.0	C/5901169-5903439	AT1G17250.1 CDS AT1G17250 ID=AT1G17250.1; Parent=AT1G17250; Name=AT1G17250.1; Note=receptor like protein 3; conf_class=4; symbol=RLP3; Alias=AtRLP3, receptor like protein 3, RFO2, RESISTANCE TO FUSARIUM OXYSPORUM 2; full_name=receptor like protein 3; computational_description=receptor like protein 3 (RLP3)%3B CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain%2C type 2 (InterPro:IPR013210)%2C Leucine-rich repeat (InterPro:IPR001611)%3B BEST Arabidopsis thaliana protein match is: receptor like protein 2 (TAIR:AT1G17240.1)%3B Has 81484 Blast hits to 24794 proteins in 958 species: Archae - 37%3B Bacteria - 4331%3B Metazoa - 15807%3B Fungi - 760%3B Plants - 53957%3B Viruses - 2%3B Other Eukaryotes - 6590 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:11751054, PMID:15194820, PMID:15965251, PMID:18434605, PMID:20736450, PMID:23717215, PMID:24172069, locus:2020382; locus_type=protein_coding
AT1G17260.1	chr1:005904058	0.0	W/5904058-5904123,5904211-5904330,5904418-5904516,5904606-5904743,5904840-5904974,5905065-5905244,5905343-5905549,5905651-5905770,5905892-5906011,5906100-5906222,5906336-5906440,5906566-5906710,5906825-5906986,5907076-5907314,5907477-5907509,5907601-5907682,5907766-5907926,5908009-5908182,5908277-5908459,5908560-5908714,5908802-5908898	AT1G17260.1 CDS AT1G17260 ID=AT1G17260.1; Parent=AT1G17260; Name=AT1G17260.1; Note=autoinhibited H[+]-ATPase isoform 10; curator_summary=belongs to H+-APTase gene family%2C involved in proanthocyanidin biosynthesis%2C disturbs the vacuolar biogenesis and acidification process; conf_class=3; symbol=AHA10; full_name=autoinhibited H(+)-ATPase isoform 10; computational_description=autoinhibited H(+)-ATPase isoform 10 (AHA10)%3B FUNCTIONS IN: ATPase activity%2C cation-transporting ATPase activity%2C ATPase activity%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism%3B INVOLVED IN: vacuole organization%2C vacuolar acidification%2C proanthocyanidin biosynthetic process%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 18 plant structures%3B EXPRESSED DURING: 10 growth stages%3B CONTAINS InterPro DOMAIN/s: ATPase%2C P-type%2C ATPase-associated domain (InterPro:IPR008250)%2C ATPase%2C P-type cation-transporter%2C N-terminal (InterPro:IPR004014)%2C Haloacid dehalogenase-like hydrolase (InterPro:IPR005834)%2C ATPase%2C P-type%2C H+ transporting proton pump (InterPro:IPR000695)%2C ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757)%2C ATPase%2C P-type%2C plasma-membrane proton-efflux (InterPro:IPR006534)%2C ATPase%2C P-type phosphorylation site (InterPro:IPR018303)%3B BEST Arabidopsis thaliana protein match is: H(+)-ATPase 8 (TAIR:AT3G42640.1)%3B Has 37639 Blast hits to 33046 proteins in 3187 species: Archae - 705%3B Bacteria - 24196%3B Metazoa - 3861%3B Fungi - 2534%3B Plants - 1888%3B Viruses - 3%3B Other Eukaryotes - 4452 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:7969026, PMID:11337417, PMID:11402198, PMID:15695592, PMID:15821287, PMID:16167896, PMID:16299181, PMID:17397506, PMID:17601828, PMID:21556928, PMID:24299194, locus:2020372; locus_type=protein_coding
AT1G17270.1	chr1:005909443	0.0	C/5909443-5909619,5909812-5910061,5910357-5911624	AT1G17270.1 CDS AT1G17270 ID=AT1G17270.1; Parent=AT1G17270; Name=AT1G17270.1; Note=O-fucosyltransferase family protein; conf_class=1; computational_description=O-fucosyltransferase family protein%3B CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378)%3B BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT5G50420.1)%3B Has 98 Blast hits to 96 proteins in 33 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 42%3B Fungi - 0%3B Plants - 52%3B Viruses - 0%3B Other Eukaryotes - 4 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:2020432; locus_type=protein_coding
AT1G17270.2	chr1:005909443	0.0	C/5909443-5909619,5909812-5910061,5910357-5911624	AT1G17270.2 CDS AT1G17270 ID=AT1G17270.2; Parent=AT1G17270; Name=AT1G17270.2; Note=O-fucosyltransferase family protein; Dbxref=locus:2020432; computational_description=O-fucosyltransferase family protein%3B CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378)%3B BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT5G50420.1)%3B Has 98 Blast hits to 96 proteins in 33 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 42%3B Fungi - 0%3B Plants - 52%3B Viruses - 0%3B Other Eukaryotes - 4 (source: NCBI BLink).; locus_type=protein_coding
AT1TE19130	chr1:005911725	0.0	W/5911725-5911854,5911855-5916535	AT1TE19130 transposable_element AT1TE19130 ID=AT1TE19130; Name=AT1TE19130; Alias=ATMU3
AT1G17275.1	chr1:005912053	0.0	W/5912053-5915313	AT1G17275.1 CDS AT1G17275 ID=AT1G17275.1; Parent=AT1G17275; Name=AT1G17275.1; index=1; computational_description=Mutator-like transposase family%2C has a 5.8e-31 P-value blast match to GB:AAA21566 mudrA of transposon%3DMuDR (MuDr-element) (Zea mays); Dbxref=PMID:16277745, locus:2825033; Note=transposable_element_gene; locus_type=transposable_element_gene
AT1G17277.1	chr1:005915644	0.0	C/5915644-5916212	AT1G17277.1 CDS AT1G17277 ID=AT1G17277.1; Parent=AT1G17277; Name=AT1G17277.1; index=1; computational_description=similar to zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G78355.1)%3B similar to GRF zinc finger containing protein [Brassica oleracea] (GB:ABD64950.1)%3B contains InterPro domain Homeodomain-like%3B (InterPro:IPR009057)%3B contains InterPro domain Zinc finger%2C GRF-type%3B (InterPro:IPR010666); Dbxref=locus:4010713449; Note=transposable_element_gene; locus_type=transposable_element_gene
AT1TE19135	chr1:005916536	0.0	W/5916536-5916583	AT1TE19135 transposable_element AT1TE19135 ID=AT1TE19135; Name=AT1TE19135; Alias=ATMU7
AT1G17280.1	chr1:005917146	0.0	C/5917146-5917422,5917603-5917694,5917859-5917886,5917964-5918003,5918088-5918149,5918250-5918313,5918396-5918434,5918848-5918902,5919106-5919162	AT1G17280.1 CDS AT1G17280 ID=AT1G17280.1; Parent=AT1G17280; Name=AT1G17280.1; Note=ubiquitin-conjugating enzyme 34; conf_class=2; symbol=UBC34; full_name=ubiquitin-conjugating enzyme 34; computational_description=ubiquitin-conjugating enzyme 34 (UBC34)%3B CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135)%2C Ubiquitin-conjugating enzyme%2C E2 (InterPro:IPR000608)%3B BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 33 (TAIR:AT5G50430.2)%3B Has 7599 Blast hits to 7596 proteins in 375 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 3285%3B Fungi - 1587%3B Plants - 1489%3B Viruses - 20%3B Other Eukaryotes - 1218 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11590065, PMID:16339806, PMID:17448460, PMID:18775970, locus:2020392; locus_type=protein_coding
AT1G17280.2	chr1:005917146	0.0	C/5917146-5917422,5917603-5917694,5917859-5917886,5917964-5918003,5918088-5918149,5918250-5918313,5918396-5918434,5918848-5918902,5919106-5919162	AT1G17280.2 CDS AT1G17280 ID=AT1G17280.2; Parent=AT1G17280; Name=AT1G17280.2; Note=ubiquitin-conjugating enzyme 34; conf_class=2; symbol=UBC34; full_name=ubiquitin-conjugating enzyme 34; computational_description=ubiquitin-conjugating enzyme 34 (UBC34)%3B CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135)%2C Ubiquitin-conjugating enzyme%2C E2 (InterPro:IPR000608)%3B BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 33 (TAIR:AT5G50430.2)%3B Has 7599 Blast hits to 7596 proteins in 375 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 3285%3B Fungi - 1587%3B Plants - 1489%3B Viruses - 20%3B Other Eukaryotes - 1218 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11590065, PMID:16339806, PMID:17448460, PMID:18775970, locus:2020392; locus_type=protein_coding
AT1G17280.3	chr1:005917146	0.0	C/5917146-5917422,5917603-5917694,5917859-5917886,5917964-5918003,5918088-5918149,5918250-5918313,5918396-5918434,5918848-5918902,5919106-5919162	AT1G17280.3 CDS AT1G17280 ID=AT1G17280.3; Parent=AT1G17280; Name=AT1G17280.3; Note=ubiquitin-conjugating enzyme 34; symbol=UBC34; full_name=ubiquitin-conjugating enzyme 34; Dbxref=PMID:11590065, PMID:16339806, PMID:17448460, PMID:18775970, locus:2020392; computational_description=ubiquitin-conjugating enzyme 34 (UBC34)%3B CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135)%2C Ubiquitin-conjugating enzyme%2C E2 (InterPro:IPR000608)%3B BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 33 (TAIR:AT5G50430.2)%3B Has 7599 Blast hits to 7596 proteins in 375 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 3285%3B Fungi - 1587%3B Plants - 1489%3B Viruses - 20%3B Other Eukaryotes - 1218 (source: NCBI BLink).; locus_type=protein_coding
AT1G17280.4	chr1:005917146	0.0	C/5917146-5917422,5917603-5917694,5917859-5917886,5917964-5918021,5918088-5918149,5918250-5918313,5918396-5918434,5918848-5918902,5919106-5919162	AT1G17280.4 CDS AT1G17280 ID=AT1G17280.4; Parent=AT1G17280; Name=AT1G17280.4; Note=ubiquitin-conjugating enzyme 34; symbol=UBC34; full_name=ubiquitin-conjugating enzyme 34; computational_description=ubiquitin-conjugating enzyme 34 (UBC34)%3B CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135)%2C Ubiquitin-conjugating enzyme%2C E2 (InterPro:IPR000608)%3B BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 33 (TAIR:AT5G50430.2)%3B Has 7599 Blast hits to 7596 proteins in 375 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 3285%3B Fungi - 1587%3B Plants - 1489%3B Viruses - 20%3B Other Eukaryotes - 1218 (source: NCBI BLink).; Dbxref=PMID:11590065, PMID:16339806, PMID:17448460, PMID:18775970, locus:2020392; locus_type=protein_coding
AT1G17280.5	chr1:005917146	0.0	C/5917146-5917422,5917603-5917694,5917859-5917886,5917964-5918003,5918088-5918149,5918250-5918313,5918396-5918434,5918848-5918902,5919106-5919162	AT1G17280.5 CDS AT1G17280 ID=AT1G17280.5; Parent=AT1G17280; Name=AT1G17280.5; Note=ubiquitin-conjugating enzyme 34; symbol=UBC34; full_name=ubiquitin-conjugating enzyme 34; Dbxref=PMID:11590065, PMID:16339806, PMID:17448460, PMID:18775970, locus:2020392; computational_description=ubiquitin-conjugating enzyme 34 (UBC34)%3B CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135)%2C Ubiquitin-conjugating enzyme%2C E2 (InterPro:IPR000608)%3B BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 33 (TAIR:AT5G50430.2)%3B Has 7599 Blast hits to 7596 proteins in 375 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 3285%3B Fungi - 1587%3B Plants - 1489%3B Viruses - 20%3B Other Eukaryotes - 1218 (source: NCBI BLink).; locus_type=protein_coding
AT1G17280.6	chr1:005917146	0.0	C/5917146-5917422,5917603-5917694,5917859-5917886,5917964-5918003,5918088-5918149,5918250-5918313,5918396-5918434,5918848-5918902,5919106-5919162	AT1G17280.6 CDS AT1G17280 ID=AT1G17280.6; Parent=AT1G17280; Name=AT1G17280.6; Note=ubiquitin-conjugating enzyme 34; symbol=UBC34; full_name=ubiquitin-conjugating enzyme 34; Dbxref=PMID:11590065, PMID:16339806, PMID:17448460, PMID:18775970, locus:2020392; computational_description=ubiquitin-conjugating enzyme 34 (UBC34)%3B CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135)%2C Ubiquitin-conjugating enzyme%2C E2 (InterPro:IPR000608)%3B BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 33 (TAIR:AT5G50430.2)%3B Has 7599 Blast hits to 7596 proteins in 375 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 3285%3B Fungi - 1587%3B Plants - 1489%3B Viruses - 20%3B Other Eukaryotes - 1218 (source: NCBI BLink).; locus_type=protein_coding
AT1G17280.7	chr1:005917146	0.0	C/5917146-5917422,5917603-5917694,5917859-5917886,5917964-5918003,5918088-5918149,5918250-5918313,5918396-5918434,5918848-5918902,5919106-5919162	AT1G17280.7 CDS AT1G17280 ID=AT1G17280.7; Parent=AT1G17280; Name=AT1G17280.7; Note=ubiquitin-conjugating enzyme 34; symbol=UBC34; full_name=ubiquitin-conjugating enzyme 34; Dbxref=PMID:11590065, PMID:16339806, PMID:17448460, PMID:18775970, locus:2020392; computational_description=ubiquitin-conjugating enzyme 34 (UBC34)%3B CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135)%2C Ubiquitin-conjugating enzyme%2C E2 (InterPro:IPR000608)%3B BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 33 (TAIR:AT5G50430.2)%3B Has 7599 Blast hits to 7596 proteins in 375 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 3285%3B Fungi - 1587%3B Plants - 1489%3B Viruses - 20%3B Other Eukaryotes - 1218 (source: NCBI BLink).; locus_type=protein_coding
AT1G17280.8	chr1:005917146	0.0	C/5917146-5917422,5917603-5917694,5917859-5917886,5917964-5918003,5918088-5918149,5918250-5918313,5918396-5918434,5918848-5918902,5919106-5919162	AT1G17280.8 CDS AT1G17280 ID=AT1G17280.8; Parent=AT1G17280; Name=AT1G17280.8; Note=ubiquitin-conjugating enzyme 34; symbol=UBC34; full_name=ubiquitin-conjugating enzyme 34; Dbxref=PMID:11590065, PMID:16339806, PMID:17448460, PMID:18775970, locus:2020392; computational_description=ubiquitin-conjugating enzyme 34 (UBC34)%3B CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135)%2C Ubiquitin-conjugating enzyme%2C E2 (InterPro:IPR000608)%3B BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 33 (TAIR:AT5G50430.2)%3B Has 7599 Blast hits to 7596 proteins in 375 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 3285%3B Fungi - 1587%3B Plants - 1489%3B Viruses - 20%3B Other Eukaryotes - 1218 (source: NCBI BLink).; locus_type=protein_coding
AT1G17280.9	chr1:005917146	0.0	C/5917146-5917422,5917603-5917694,5917859-5917886,5917964-5918003,5918088-5918149,5918250-5918313,5918396-5918434,5918848-5918902,5919106-5919162	AT1G17280.9 CDS AT1G17280 ID=AT1G17280.9; Parent=AT1G17280; Name=AT1G17280.9; Note=ubiquitin-conjugating enzyme 34; symbol=UBC34; full_name=ubiquitin-conjugating enzyme 34; Dbxref=PMID:11590065, PMID:16339806, PMID:17448460, PMID:18775970, locus:2020392; computational_description=ubiquitin-conjugating enzyme 34 (UBC34)%3B CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135)%2C Ubiquitin-conjugating enzyme%2C E2 (InterPro:IPR000608)%3B BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 33 (TAIR:AT5G50430.2)%3B Has 7599 Blast hits to 7596 proteins in 375 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 3285%3B Fungi - 1587%3B Plants - 1489%3B Viruses - 20%3B Other Eukaryotes - 1218 (source: NCBI BLink).; locus_type=protein_coding
AT1G17285.2	chr1:005920715	0.0	W/5920715-5921112,5921218-5921287	AT1G17285.2 CDS AT1G17285 ID=AT1G17285.2; Parent=AT1G17285; Name=AT1G17285.2; Note=transmembrane protein; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17300.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).; Dbxref=locus:1006230716; locus_type=protein_coding
AT1G17285.1	chr1:005920895	0.0	W/5920895-5921112,5921218-5921287	AT1G17285.1 CDS AT1G17285 ID=AT1G17285.1; Parent=AT1G17285; Name=AT1G17285.1; Note=transmembrane protein; conf_class=1; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17300.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:1006230716; locus_type=protein_coding
AT1G17290.1	chr1:005922771	0.0	W/5922771-5922992,5923592-5923642,5923721-5923771,5923860-5923925,5924003-5924064,5924151-5924229,5924307-5924411,5924500-5924610,5924739-5924876,5924972-5925167,5925261-5925415,5925526-5925600,5925681-5925884,5925977-5926093	AT1G17290.1 CDS AT1G17290 ID=AT1G17290.1; Parent=AT1G17290; Name=AT1G17290.1; Note=alanine aminotransferas; curator_summary=Encodes for alanine aminotransferase (ALAAT1)%2C involved in alanine catabolism during plants recovery from hypoxia; conf_class=2; symbol=AlaAT1; full_name=alanine aminotransferas; computational_description=alanine aminotransferas (AlaAT1)%3B FUNCTIONS IN: L-alanine:2-oxoglutarate aminotransferase activity%2C ATP binding%3B INVOLVED IN: response to cadmium ion%2C response to hypoxia%2C L-alanine catabolic process%2C by transamination%3B LOCATED IN: mitochondrion%2C chloroplast%3B EXPRESSED IN: 9 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%3B CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176)%2C Pyridoxal phosphate-dependent transferase%2C major domain (InterPro:IPR015424)%2C Aminotransferase%2C class I/classII (InterPro:IPR004839)%2C Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (InterPro:IPR015422)%2C Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (InterPro:IPR015421)%3B BEST Arabidopsis thaliana protein match is: alanine aminotransferase 2 (TAIR:AT1G72330.1)%3B Has 28241 Blast hits to 28232 proteins in 2888 species: Archae - 752%3B Bacteria - 19527%3B Metazoa - 637%3B Fungi - 692%3B Plants - 1303%3B Viruses - 0%3B Other Eukaryotes - 5330 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11743115, PMID:12368499, PMID:12529529, PMID:12631323, PMID:12969430, PMID:14671022, PMID:15352244, PMID:15489341, PMID:15734908, PMID:16033780, PMID:16199612, PMID:16502469, PMID:16547123, PMID:16927206, PMID:16916443, PMID:17163439, PMID:17319845, PMID:17595195, PMID:17828791, PMID:18650403, PMID:18603615, PMID:18775970, PMID:21146842, PMID:22995300, locus:2195808; locus_type=protein_coding
AT1G17300.2	chr1:005926904	0.0	W/5926904-5927290,5927387-5927440	AT1G17300.2 CDS AT1G17300 ID=AT1G17300.2; Parent=AT1G17300; Name=AT1G17300.2; Note=hypothetical protein; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17285.1)%3B Has 27 Blast hits to 27 proteins in 4 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 27%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=PMID:20736450, locus:2195803; locus_type=protein_coding
AT1G17300.1	chr1:005926994	0.0	W/5926994-5927290,5927387-5927440	AT1G17300.1 CDS AT1G17300 ID=AT1G17300.1; Parent=AT1G17300; Name=AT1G17300.1; Note=hypothetical protein; conf_class=2; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17285.1)%3B Has 27 Blast hits to 27 proteins in 4 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 27%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:20736450, locus:2195803; locus_type=protein_coding
AT1G17310.1	chr1:005928014	0.0	C/5928014-5928667	AT1G17310.1 CDS AT1G17310 ID=AT1G17310.1; Parent=AT1G17310; Name=AT1G17310.1; Note=MADS-box transcription factor family protein; conf_class=1; computational_description=MADS-box transcription factor family protein%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B LOCATED IN: nucleus%3B EXPRESSED IN: antipodal cell%2C sperm cell%2C carpel%2C female gametophyte%3B EXPRESSED DURING: 4 anthesis%3B CONTAINS InterPro DOMAIN/s: Transcription factor%2C MADS-box (InterPro:IPR002100)%3B BEST Arabidopsis thaliana protein match is: MADS-box transcription factor family protein (TAIR:AT1G72350.1)%3B Has 5468 Blast hits to 5468 proteins in 649 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 628%3B Fungi - 303%3B Plants - 4468%3B Viruses - 0%3B Other Eukaryotes - 69 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11118137, PMID:12698294, PMID:12837945, PMID:12949148, PMID:14557044, PMID:18567829, PMID:20631316, PMID:20736450, locus:2195798; locus_type=protein_coding
AT1G17310.2	chr1:005928014	0.0	C/5928014-5928700	AT1G17310.2 CDS AT1G17310 ID=AT1G17310.2; Parent=AT1G17310; Name=AT1G17310.2; Note=MADS-box transcription factor family protein; computational_description=MADS-box transcription factor family protein%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B LOCATED IN: nucleus%3B EXPRESSED IN: antipodal cell%2C sperm cell%2C carpel%2C female gametophyte%3B EXPRESSED DURING: 4 anthesis%3B CONTAINS InterPro DOMAIN/s: Transcription factor%2C MADS-box (InterPro:IPR002100)%3B BEST Arabidopsis thaliana protein match is: MADS-box transcription factor family protein (TAIR:AT1G72350.1)%3B Has 5468 Blast hits to 5468 proteins in 649 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 628%3B Fungi - 303%3B Plants - 4468%3B Viruses - 0%3B Other Eukaryotes - 69 (source: NCBI BLink).; Dbxref=PMID:11118137, PMID:12698294, PMID:12837945, PMID:12949148, PMID:14557044, PMID:18567829, PMID:20631316, PMID:20736450, locus:2195798; locus_type=protein_coding
AT1G17330.1	chr1:005929966	0.0	W/5929966-5930127,5930281-5930311,5930404-5930422,5930803-5930900,5931027-5931125,5931257-5931429,5931509-5931595	AT1G17330.1 CDS AT1G17330 ID=AT1G17330.1; Parent=AT1G17330; Name=AT1G17330.1; Note=Metal-dependent phosphohydrolase; conf_class=2; computational_description=Metal-dependent phosphohydrolase%3B FUNCTIONS IN: catalytic activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase%2C HD subdomain (InterPro:IPR006674)%2C Metal-dependent phosphohydrolase%2C HD domain (InterPro:IPR003607)%3B Has 1677 Blast hits to 1677 proteins in 841 species: Archae - 70%3B Bacteria - 1404%3B Metazoa - 0%3B Fungi - 90%3B Plants - 42%3B Viruses - 5%3B Other Eukaryotes - 66 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:20122158, locus:2029111; locus_type=protein_coding
AT1G17340.1	chr1:005934129	0.0	W/5934129-5934215,5934694-5934898,5934994-5935159,5935261-5935483,5935580-5935656,5935838-5936025,5936115-5936212,5936308-5936447,5936529-5936657,5936778-5937081,5937179-5937300,5937389-5937499,5937591-5937758,5937849-5938019,5938121-5938205,5938308-5938391	AT1G17340.1 CDS AT1G17340 ID=AT1G17340.1; Parent=AT1G17340; Name=AT1G17340.1; Note=Phosphoinositide phosphatase family protein; conf_class=2; Alias=SAC5, suppressor of actin 5; computational_description=Phosphoinositide phosphatase family protein%3B CONTAINS InterPro DOMAIN/s: Synaptojanin%2C N-terminal (InterPro:IPR002013)%3B BEST Arabidopsis thaliana protein match is: Phosphoinositide phosphatase family protein (TAIR:AT3G14205.1)%3B Has 1726 Blast hits to 1665 proteins in 230 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 581%3B Fungi - 579%3B Plants - 272%3B Viruses - 0%3B Other Eukaryotes - 294 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12805586, PMID:18650403, PMID:20736450, PMID:23505340, PMID:24550313, locus:2029105; locus_type=protein_coding
AT1G17345.1	chr1:005940525	0.0	W/5940525-5940920	AT1G17345.1 CDS AT1G17345 ID=AT1G17345.1; Parent=AT1G17345; Name=AT1G17345.1; Note=SAUR-like auxin-responsive protein family; conf_class=1; Alias=SAUR77, SMALL AUXIN UPREGULATED RNA 77; computational_description=SAUR-like auxin-responsive protein family %3B CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676)%3B BEST Arabidopsis thaliana protein match is: SAUR-like auxin-responsive protein family (TAIR:AT1G72430.1)%3B Has 128 Blast hits to 128 proteins in 13 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 128%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:20736450, locus:1005716750; locus_type=protein_coding
AT1G17350.1	chr1:005942391	0.0	W/5942391-5942442,5942736-5942849,5943084-5943140,5943328-5943419,5943609-5943689,5943781-5943879,5944084-5944272	AT1G17350.1 CDS AT1G17350 ID=AT1G17350.1; Parent=AT1G17350; Name=AT1G17350.1; Note=NADH:ubiquinone oxidoreductase intermediate-associated protein 30; conf_class=2; computational_description=NADH:ubiquinone oxidoreductase intermediate-associated protein 30%3B CONTAINS InterPro DOMAIN/s: NADH:ubiquinone oxidoreductase intermediate-associated protein 30 (InterPro:IPR013857)%3B BEST Arabidopsis thaliana protein match is: NADH:ubiquinone oxidoreductase intermediate-associated protein 30 (TAIR:AT1G72420.1)%3B Has 552 Blast hits to 552 proteins in 198 species: Archae - 0%3B Bacteria - 134%3B Metazoa - 110%3B Fungi - 92%3B Plants - 100%3B Viruses - 0%3B Other Eukaryotes - 116 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:14671022, locus:2029100; locus_type=protein_coding
AT1G17350.2	chr1:005942391	0.0	W/5942391-5942442,5942736-5942849,5943084-5943140,5943328-5943419,5943609-5943689,5943781-5943903,5944084-5944233,5944289-5944330	AT1G17350.2 CDS AT1G17350 ID=AT1G17350.2; Parent=AT1G17350; Name=AT1G17350.2; Note=NADH:ubiquinone oxidoreductase intermediate-associated protein 30; conf_class=6; computational_description=NADH:ubiquinone oxidoreductase intermediate-associated protein 30%3B CONTAINS InterPro DOMAIN/s: NADH:ubiquinone oxidoreductase intermediate-associated protein 30 (InterPro:IPR013857)%3B BEST Arabidopsis thaliana protein match is: NADH:ubiquinone oxidoreductase intermediate-associated protein 30 (TAIR:AT1G72420.1)%3B Has 552 Blast hits to 552 proteins in 198 species: Archae - 0%3B Bacteria - 134%3B Metazoa - 110%3B Fungi - 92%3B Plants - 100%3B Viruses - 0%3B Other Eukaryotes - 116 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:14576160, PMID:14671022, locus:2029100; locus_type=protein_coding
AT1G17350.3	chr1:005942391	0.0	W/5942391-5942442,5942736-5942849,5943084-5943140,5943328-5943419,5943609-5943689,5943781-5943879,5944084-5944272	AT1G17350.3 CDS AT1G17350 ID=AT1G17350.3; Parent=AT1G17350; Name=AT1G17350.3; Note=NADH:ubiquinone oxidoreductase intermediate-associated protein 30; Dbxref=PMID:14576160, PMID:14671022, locus:2029100; computational_description=NADH:ubiquinone oxidoreductase intermediate-associated protein 30%3B CONTAINS InterPro DOMAIN/s: NADH:ubiquinone oxidoreductase intermediate-associated protein 30 (InterPro:IPR013857)%3B BEST Arabidopsis thaliana protein match is: NADH:ubiquinone oxidoreductase intermediate-associated protein 30 (TAIR:AT1G72420.1)%3B Has 552 Blast hits to 552 proteins in 198 species: Archae - 0%3B Bacteria - 134%3B Metazoa - 110%3B Fungi - 92%3B Plants - 100%3B Viruses - 0%3B Other Eukaryotes - 116 (source: NCBI BLink).; locus_type=protein_coding
AT1G17350.4	chr1:005942391	0.0	W/5942391-5942442,5942736-5942849,5943084-5943140,5943328-5943419,5943609-5943689,5943781-5943879,5944084-5944272	AT1G17350.4 CDS AT1G17350 ID=AT1G17350.4; Parent=AT1G17350; Name=AT1G17350.4; Note=NADH:ubiquinone oxidoreductase intermediate-associated protein 30; Dbxref=PMID:14576160, PMID:14671022, locus:2029100; computational_description=NADH:ubiquinone oxidoreductase intermediate-associated protein 30%3B CONTAINS InterPro DOMAIN/s: NADH:ubiquinone oxidoreductase intermediate-associated protein 30 (InterPro:IPR013857)%3B BEST Arabidopsis thaliana protein match is: NADH:ubiquinone oxidoreductase intermediate-associated protein 30 (TAIR:AT1G72420.1)%3B Has 552 Blast hits to 552 proteins in 198 species: Archae - 0%3B Bacteria - 134%3B Metazoa - 110%3B Fungi - 92%3B Plants - 100%3B Viruses - 0%3B Other Eukaryotes - 116 (source: NCBI BLink).; locus_type=protein_coding
AT1G17350.5	chr1:005942391	0.0	W/5942391-5942442,5942736-5942849,5943084-5943140,5943328-5943419,5943609-5943689,5943781-5943879,5944084-5944272	AT1G17350.5 CDS AT1G17350 ID=AT1G17350.5; Parent=AT1G17350; Name=AT1G17350.5; Note=NADH:ubiquinone oxidoreductase intermediate-associated protein 30; Dbxref=PMID:14576160, PMID:14671022, locus:2029100; computational_description=NADH:ubiquinone oxidoreductase intermediate-associated protein 30%3B CONTAINS InterPro DOMAIN/s: NADH:ubiquinone oxidoreductase intermediate-associated protein 30 (InterPro:IPR013857)%3B BEST Arabidopsis thaliana protein match is: NADH:ubiquinone oxidoreductase intermediate-associated protein 30 (TAIR:AT1G72420.1)%3B Has 552 Blast hits to 552 proteins in 198 species: Archae - 0%3B Bacteria - 134%3B Metazoa - 110%3B Fungi - 92%3B Plants - 100%3B Viruses - 0%3B Other Eukaryotes - 116 (source: NCBI BLink).; locus_type=protein_coding
AT1G05303.1	chr1:005946498	0.0	C/5946498-5946759	AT1G05303.1 lnc_RNA AT1G05303 ID=AT1G05303.1; Parent=AT1G05303; Name=AT1G05303.1; locus_type=long_noncoding_rna
AT1G17360.1	chr1:005947441	0.0	W/5947441-5947499,5947582-5947767,5947856-5947956,5948053-5948080,5948166-5948318,5948398-5949215,5949366-5949910,5950009-5951176,5951272-5951399	AT1G17360.1 CDS AT1G17360 ID=AT1G17360.1; Parent=AT1G17360; Name=AT1G17360.1; Note=LOW protein: protein phosphatase 1 regulatory subunit-like protein; conf_class=2; computational_description=BEST Arabidopsis thaliana protein match is: COP1-interacting protein-related (TAIR:AT1G72410.1)%3B Has 9949 Blast hits to 7480 proteins in 576 species: Archae - 12%3B Bacteria - 1007%3B Metazoa - 3636%3B Fungi - 982%3B Plants - 444%3B Viruses - 50%3B Other Eukaryotes - 3818 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17227549, PMID:18650403, locus:2018789; locus_type=protein_coding
AT1G17370.1	chr1:005951842	0.0	C/5951842-5952114,5952208-5952384,5952475-5952560,5952679-5952798,5952912-5952942,5953035-5953110,5953203-5953290,5953385-5953446,5953547-5953623,5953740-5953842,5954218-5954279,5954721-5954825	AT1G17370.1 CDS AT1G17370 ID=AT1G17370.1; Parent=AT1G17370; Name=AT1G17370.1; Note=oligouridylate binding protein 1B; curator_summary=Encodes an RNA%E2%80%93binding protein involved in stress granule formation. Regulated by a transposable element small RNA.; conf_class=2; symbol=UBP1B; full_name=oligouridylate binding protein 1B; computational_description=oligouridylate binding protein 1B (UBP1B)%3B FUNCTIONS IN: mRNA 3'-UTR binding%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G14100.1)%3B Has 681 Blast hits to 681 proteins in 21 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 681%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12024044, PMID:10747031, PMID:20687615, PMID:21120628, PMID:22346759, PMID:23040327, locus:2018794; locus_type=protein_coding
AT1G17370.2	chr1:005951842	0.0	C/5951842-5952114,5952208-5952384,5952475-5952558,5952686-5952798,5952912-5952942,5953035-5953110,5953203-5953290,5953385-5953446,5953547-5953623,5953740-5953842,5954218-5954279,5954721-5954825	AT1G17370.2 CDS AT1G17370 ID=AT1G17370.2; Parent=AT1G17370; Name=AT1G17370.2; Note=oligouridylate binding protein 1B; curator_summary=Encodes an RNA%E2%80%93binding protein involved in stress granule formation. Regulated by a transposable element small RNA.; conf_class=3; symbol=UBP1B; full_name=oligouridylate binding protein 1B; computational_description=oligouridylate binding protein 1B (UBP1B)%3B FUNCTIONS IN: mRNA 3'-UTR binding%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G14100.1)%3B Has 681 Blast hits to 681 proteins in 21 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 681%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12024044, PMID:10747031, PMID:20687615, PMID:21120628, PMID:22346759, PMID:23040327, locus:2018794; locus_type=protein_coding
AT1G17380.1	chr1:005955654	0.0	C/5955654-5955885,5956053-5956376,5956497-5956587,5956893-5957070	AT1G17380.1 CDS AT1G17380 ID=AT1G17380.1; Parent=AT1G17380; Name=AT1G17380.1; Note=jasmonate-zim-domain protein 5; conf_class=2; symbol=JAZ5; Alias=TIFY11A; full_name=jasmonate-zim-domain protein 5; computational_description=jasmonate-zim-domain protein 5 (JAZ5)%3B CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399)%2C CCT domain-like (InterPro:IPR018467)%3B BEST Arabidopsis thaliana protein match is: jasmonate-zim-domain protein 6 (TAIR:AT1G72450.1)%3B Has 301 Blast hits to 296 proteins in 28 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 301%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15720654, PMID:17337630, PMID:17526916, PMID:17499004, PMID:17637675, PMID:17637677, PMID:17675405, PMID:17888165, PMID:18252252, PMID:18783601, PMID:20360743, PMID:21335373, locus:2018804; locus_type=protein_coding
AT1G17380.2	chr1:005955654	0.0	C/5955654-5955885,5956053-5956376,5956497-5956678	AT1G17380.2 CDS AT1G17380 ID=AT1G17380.2; Parent=AT1G17380; Name=AT1G17380.2; Note=jasmonate-zim-domain protein 5; symbol=JAZ5; Alias=TIFY11A; full_name=jasmonate-zim-domain protein 5; computational_description=jasmonate-zim-domain protein 5 (JAZ5)%3B CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399)%2C CCT domain-like (InterPro:IPR018467)%3B BEST Arabidopsis thaliana protein match is: jasmonate-zim-domain protein 6 (TAIR:AT1G72450.1)%3B Has 301 Blast hits to 296 proteins in 28 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 301%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=PMID:15720654, PMID:17337630, PMID:17526916, PMID:17499004, PMID:17637675, PMID:17637677, PMID:17675405, PMID:17888165, PMID:18252252, PMID:18783601, PMID:20360743, PMID:21335373, locus:2018804; locus_type=protein_coding
AT1G17380.3	chr1:005955986	0.0	C/5955986-5956376,5956497-5956587,5956893-5957070	AT1G17380.3 CDS AT1G17380 ID=AT1G17380.3; Parent=AT1G17380; Name=AT1G17380.3; Note=jasmonate-zim-domain protein 5; symbol=JAZ5; Alias=TIFY11A; full_name=jasmonate-zim-domain protein 5; computational_description=jasmonate-zim-domain protein 5 (JAZ5)%3B CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399)%2C CCT domain-like (InterPro:IPR018467)%3B BEST Arabidopsis thaliana protein match is: jasmonate-zim-domain protein 6 (TAIR:AT1G72450.1)%3B Has 301 Blast hits to 296 proteins in 28 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 301%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=PMID:15720654, PMID:17337630, PMID:17526916, PMID:17499004, PMID:17637675, PMID:17637677, PMID:17675405, PMID:17888165, PMID:18252252, PMID:18783601, PMID:20360743, PMID:21335373, locus:2018804; locus_type=protein_coding
AT1G17390.1	chr1:005958628	0.0	C/5958628-5959651	AT1G17390.1 CDS AT1G17390 ID=AT1G17390.1; Parent=AT1G17390; Name=AT1G17390.1; index=1; computational_description=similar to RNase H domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G36905.1)%3B similar to Ribonuclease H [Medicago truncatula] (GB:ABD28505.1)%3B contains InterPro domain Ribonuclease H%3B (InterPro:IPR002156)%3B contains InterPro domain Polynucleotidyl transferase%2C Ribonuclease H fold%3B (InterPro:IPR012337); Dbxref=PMID:17627280, locus:2018810; Note=transposable_element_gene; locus_type=transposable_element_gene
AT1TE19270	chr1:005958628	0.0	C/5958628-5959569,5959561-5959682	AT1TE19270 transposable_element AT1TE19270 ID=AT1TE19270; Name=AT1TE19270; Alias=ATLINE1_2
AT1G17400.1	chr1:005960920	0.0	C/5960920-5960939,5961020-5961200,5961278-5961888,5962080-5962149,5962240-5962245	AT1G17400.1 CDS AT1G17400 ID=AT1G17400.1; Parent=AT1G17400; Name=AT1G17400.1; Note=hypothetical protein; conf_class=2; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72490.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2018821; locus_type=protein_coding
AT1G17400.2	chr1:005960920	0.0	C/5960920-5960939,5961020-5961200,5961278-5961888,5962080-5962149,5962240-5962245	AT1G17400.2 CDS AT1G17400 ID=AT1G17400.2; Parent=AT1G17400; Name=AT1G17400.2; Note=hypothetical protein; Dbxref=locus:2018821; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72490.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; locus_type=protein_coding
AT1G17400.3	chr1:005961269	0.0	C/5961269-5961888,5962080-5962149,5962240-5962245	AT1G17400.3 CDS AT1G17400 ID=AT1G17400.3; Parent=AT1G17400; Name=AT1G17400.3; Note=hypothetical protein; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72490.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=locus:2018821; locus_type=protein_coding
AT1G05307.1	chr1:005962530	0.0	W/5962530-5962906	AT1G05307.1 lnc_RNA AT1G05307 ID=AT1G05307.1; Parent=AT1G05307; Name=AT1G05307.1; locus_type=long_noncoding_rna
AT1TE19280	chr1:005963974	0.0	W/5963974-5964607	AT1TE19280 transposable_element AT1TE19280 ID=AT1TE19280; Name=AT1TE19280; Alias=VANDAL17
AT1TE19285	chr1:005965476	0.0	C/5965476-5967002	AT1TE19285 transposable_element AT1TE19285 ID=AT1TE19285; Name=AT1TE19285; Alias=SIMPLEHAT2
AT1TE19290	chr1:005967003	0.0	C/5967003-5967260	AT1TE19290 transposable_element AT1TE19290 ID=AT1TE19290; Name=AT1TE19290; Alias=HELITRONY3
AT1TE19295	chr1:005967261	0.0	W/5967261-5967319	AT1TE19295 transposable_element AT1TE19295 ID=AT1TE19295; Name=AT1TE19295; Alias=ATHPOGO
AT1TE19300	chr1:005967433	0.0	W/5967433-5967570	AT1TE19300 transposable_element AT1TE19300 ID=AT1TE19300; Name=AT1TE19300; Alias=ATHPOGON1
AT1G17410.1	chr1:005968627	0.0	C/5968627-5968661,5968777-5968886,5969058-5969165,5969263-5969487,5969713-5969780	AT1G17410.1 CDS AT1G17410 ID=AT1G17410.1; Parent=AT1G17410; Name=AT1G17410.1; Note=Nucleoside diphosphate kinase family protein; conf_class=2; computational_description=Nucleoside diphosphate kinase family protein%3B FUNCTIONS IN: nucleoside diphosphate kinase activity%2C ATP binding%3B INVOLVED IN: in 6 processes%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Nucleoside diphosphate kinase%2C core (InterPro:IPR001564)%3B BEST Arabidopsis thaliana protein match is: nucleoside diphosphate kinase 2 (TAIR:AT5G63310.1)%3B Has 9030 Blast hits to 8806 proteins in 2558 species: Archae - 289%3B Bacteria - 4566%3B Metazoa - 1151%3B Fungi - 165%3B Plants - 382%3B Viruses - 117%3B Other Eukaryotes - 2360 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17059404, PMID:18178621, locus:2018832; locus_type=protein_coding
AT1G17410.2	chr1:005968627	0.0	C/5968627-5968661,5968777-5968886,5969058-5969165,5969263-5969444	AT1G17410.2 CDS AT1G17410 ID=AT1G17410.2; Parent=AT1G17410; Name=AT1G17410.2; Note=Nucleoside diphosphate kinase family protein; conf_class=4; computational_description=Nucleoside diphosphate kinase family protein%3B FUNCTIONS IN: nucleoside diphosphate kinase activity%2C ATP binding%3B INVOLVED IN: in 6 processes%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Nucleoside diphosphate kinase%2C core (InterPro:IPR001564)%3B BEST Arabidopsis thaliana protein match is: nucleoside diphosphate kinase 2 (TAIR:AT5G63310.1)%3B Has 9030 Blast hits to 8806 proteins in 2558 species: Archae - 289%3B Bacteria - 4566%3B Metazoa - 1151%3B Fungi - 165%3B Plants - 382%3B Viruses - 117%3B Other Eukaryotes - 2360 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:17059404, PMID:18178621, locus:2018832; locus_type=protein_coding
AT1G17410.3	chr1:005968970	0.0	C/5968970-5969165,5969263-5969444	AT1G17410.3 CDS AT1G17410 ID=AT1G17410.3; Parent=AT1G17410; Name=AT1G17410.3; Note=Nucleoside diphosphate kinase family protein; computational_description=Nucleoside diphosphate kinase family protein%3B FUNCTIONS IN: nucleoside diphosphate kinase activity%2C ATP binding%3B INVOLVED IN: in 6 processes%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Nucleoside diphosphate kinase%2C core (InterPro:IPR001564)%3B BEST Arabidopsis thaliana protein match is: nucleoside diphosphate kinase 2 (TAIR:AT5G63310.1)%3B Has 9030 Blast hits to 8806 proteins in 2558 species: Archae - 289%3B Bacteria - 4566%3B Metazoa - 1151%3B Fungi - 165%3B Plants - 382%3B Viruses - 117%3B Other Eukaryotes - 2360 (source: NCBI BLink).; Dbxref=PMID:17059404, PMID:18178621, locus:2018832; locus_type=protein_coding
AT1G05313.1	chr1:005975212	0.0	C/5975212-5975631	AT1G05313.1 lnc_RNA AT1G05313 ID=AT1G05313.1; Parent=AT1G05313; Name=AT1G05313.1; locus_type=long_noncoding_rna
AT1G17420.1	chr1:005977512	0.0	W/5977512-5977902,5978013-5978293,5978498-5978735,5978860-5979189,5979571-5979764,5979856-5980157,5980250-5980516,5980628-5981384	AT1G17420.1 CDS AT1G17420 ID=AT1G17420.1; Parent=AT1G17420; Name=AT1G17420.1; Note=lipoxygenase 3; curator_summary=LOX3 encode a Lipoxygenase. Lipoxygenases (LOXs) catalyze the oxygenation of fatty acids (FAs).; conf_class=1; symbol=LOX3; Alias=ATLOX3, Arabidopsis thaliana lipoxygenase 3; full_name=lipoxygenase 3; computational_description=lipoxygenase 3 (LOX3)%3B FUNCTIONS IN: oxidoreductase activity%2C acting on single donors with incorporation of molecular oxygen%2C incorporation of two atoms of oxygen%2C lipoxygenase activity%2C iron ion binding%2C metal ion binding%3B INVOLVED IN: growth%2C response to fungus%2C jasmonic acid biosynthetic process%2C response to wounding%2C defense response%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Lipoxygenase%2C iron binding site (InterPro:IPR020833)%2C Lipoxygenase%2C C-terminal (InterPro:IPR013819)%2C Lipoxygenase%2C LH2 (InterPro:IPR001024)%2C Lipase/lipooxygenase%2C PLAT/LH2 (InterPro:IPR008976)%2C Lipoxygenase%2C conserved site (InterPro:IPR020834)%2C Lipoxygenase (InterPro:IPR000907)%2C Lipoxygenase%2C plant (InterPro:IPR001246)%3B BEST Arabidopsis thaliana protein match is: PLAT/LH2 domain-containing lipoxygenase family protein (TAIR:AT1G72520.1)%3B Has 1470 Blast hits to 1436 proteins in 179 species: Archae - 0%3B Bacteria - 76%3B Metazoa - 529%3B Fungi - 49%3B Plants - 787%3B Viruses - 0%3B Other Eukaryotes - 29 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:8305494, PMID:12428010, PMID:8702864, PMID:9232884, PMID:12620105, PMID:12805597, PMID:14576160, PMID:15282545, PMID:15235117, PMID:15494554, PMID:15610350, PMID:15688252, PMID:15720654, PMID:16258015, PMID:16244138, PMID:16299169, PMID:16500996, PMID:16698904, PMID:16798948, PMID:16923014, PMID:16901781, PMID:16963437, PMID:17038189, PMID:17337630, PMID:17369372, PMID:17475618, PMID:17581762, PMID:17545220, PMID:17905899, PMID:17786451, PMID:18156220, PMID:18070919, PMID:18216250, PMID:18192438, PMID:18433503, PMID:18400103, PMID:18467340, PMID:19220788, PMID:21052784, PMID:21336026, PMID:21372125, PMID:23148892, PMID:23505340, PMID:24286169, PMID:24837830, locus:2018848; locus_type=protein_coding
AT1G17430.1	chr1:005982310	0.0	W/5982310-5983035,5983155-5983247,5983553-5983620,5983808-5983919	AT1G17430.1 CDS AT1G17430 ID=AT1G17430.1; Parent=AT1G17430; Name=AT1G17430.1; Note=alpha/beta-Hydrolases superfamily protein; conf_class=2; computational_description=alpha/beta-Hydrolases superfamily protein%3B FUNCTIONS IN: hydrolase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073)%3B BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G72620.1)%3B Has 4935 Blast hits to 4934 proteins in 1109 species: Archae - 58%3B Bacteria - 3571%3B Metazoa - 147%3B Fungi - 8%3B Plants - 323%3B Viruses - 0%3B Other Eukaryotes - 828 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, locus:2018856; locus_type=protein_coding
AT1G17440.1	chr1:005984407	0.0	C/5984407-5984589,5984680-5984715,5984855-5984916,5985016-5985094,5985191-5985265,5985354-5985968,5986447-5986659,5986875-5987663	AT1G17440.1 CDS AT1G17440 ID=AT1G17440.1; Parent=AT1G17440; Name=AT1G17440.1; Note=Transcription initiation factor TFIID subunit A; curator_summary=Encodes one of two Arabidopsis proteins with similarity to the TBP-associated factor TAF12. The gene product is an EIN3-interacting TFIID transcription factor required for proper ethylene response%2C including ERF1 induction. Loss of function mutants show enhanced response to ethylene. Located in nucleus and expressed throughout the plant. Required for ERF1 expression. Cytokinin-hypersensitive 1 (CKH1) mutants are characterized by rapidly growing calli with a green color at low levels of cytokinins%2C which are insufficient to induce such cytokinin responses in wild-type explants. It is hypothesized that CKH1 acts as a negative regulator of cytokinin signaling in Arabidopsis.; conf_class=1; symbol=EER4; Alias=CKH1, CYTOKININ-HYPERSENSITIVE 1, TAF12B, TBP-ASSOCIATED FACTOR 12B; full_name=ENHANCED ETHYLENE RESPONSE 4; computational_description=ENHANCED ETHYLENE RESPONSE 4 (EER4)%3B FUNCTIONS IN: transcription initiation factor activity%2C DNA binding%3B INVOLVED IN: regulation of ethylene mediated signaling pathway%2C jasmonic acid mediated signaling pathway%2C transcription initiation%3B LOCATED IN: nucleus%2C transcription factor TFIID complex%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Transcription initiation factor TFIID (InterPro:IPR003228)%2C Histone-fold (InterPro:IPR009072)%3B BEST Arabidopsis thaliana protein match is: TBP-associated factor 12 (TAIR:AT3G10070.1)%3B Has 83508 Blast hits to 36935 proteins in 1541 species: Archae - 40%3B Bacteria - 5554%3B Metazoa - 31214%3B Fungi - 9645%3B Plants - 6795%3B Viruses - 322%3B Other Eukaryotes - 29938 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14576160, PMID:15310842, PMID:17340043, PMID:17526916, PMID:18650403, PMID:18775970, PMID:15527982, PMID:21357580, PMID:21357579, locus:2018861; locus_type=protein_coding
AT1G17440.2	chr1:005984407	0.0	C/5984407-5984589,5984680-5984715,5984855-5984916,5985016-5985094,5985191-5985265,5985354-5985968,5986447-5986659,5986875-5987663	AT1G17440.2 CDS AT1G17440 ID=AT1G17440.2; Parent=AT1G17440; Name=AT1G17440.2; Note=Transcription initiation factor TFIID subunit A; curator_summary=Encodes one of two Arabidopsis proteins with similarity to the TBP-associated factor TAF12. The gene product is an EIN3-interacting TFIID transcription factor required for proper ethylene response%2C including ERF1 induction. Loss of function mutants show enhanced response to ethylene. Located in nucleus and expressed throughout the plant. Required for ERF1 expression. Cytokinin-hypersensitive 1 (CKH1) mutants are characterized by rapidly growing calli with a green color at low levels of cytokinins%2C which are insufficient to induce such cytokinin responses in wild-type explants. It is hypothesized that CKH1 acts as a negative regulator of cytokinin signaling in Arabidopsis.; conf_class=3; symbol=EER4; Alias=CKH1, CYTOKININ-HYPERSENSITIVE 1, TAF12B, TBP-ASSOCIATED FACTOR 12B; full_name=ENHANCED ETHYLENE RESPONSE 4; computational_description=ENHANCED ETHYLENE RESPONSE 4 (EER4)%3B FUNCTIONS IN: transcription initiation factor activity%2C DNA binding%3B INVOLVED IN: regulation of ethylene mediated signaling pathway%2C jasmonic acid mediated signaling pathway%2C transcription initiation%3B LOCATED IN: nucleus%2C transcription factor TFIID complex%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Transcription initiation factor TFIID (InterPro:IPR003228)%2C Histone-fold (InterPro:IPR009072)%3B BEST Arabidopsis thaliana protein match is: TBP-associated factor 12 (TAIR:AT3G10070.1)%3B Has 83508 Blast hits to 36935 proteins in 1541 species: Archae - 40%3B Bacteria - 5554%3B Metazoa - 31214%3B Fungi - 9645%3B Plants - 6795%3B Viruses - 322%3B Other Eukaryotes - 29938 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:15310842, PMID:17340043, PMID:17526916, PMID:18650403, PMID:18775970, PMID:15527982, PMID:21357580, PMID:21357579, locus:2018861; locus_type=protein_coding
AT1G17450.2	chr1:005988579	0.0	C/5988579-5988764,5988912-5988950,5989043-5989507,5989665-5989723,5989819-5990569,5990940-5991257,5991456-5991924,5992250-5992632,5992918-5993070,5993267-5993548,5993654-5994388,5994488-5995117,5995213-5995398,5995529-5995591,5995716-5995790,5995870-5996254,5996338-5996693	AT1G17450.2 CDS AT1G17450 ID=AT1G17450.2; Parent=AT1G17450; Name=AT1G17450.2; Note=B-block binding subunit of TFIIIC; conf_class=6; computational_description=B-block binding subunit of TFIIIC%3B CONTAINS InterPro DOMAIN/s: B-block binding subunit of TFIIIC (InterPro:IPR007309)%3B BEST Arabidopsis thaliana protein match is: B-block binding subunit of TFIIIC (TAIR:AT1G59453.1)%3B Has 94 Blast hits to 81 proteins in 18 species: Archae - 2%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 88%3B Viruses - 0%3B Other Eukaryotes - 4 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:15546358, locus:2018799; locus_type=protein_coding
AT1G17450.1	chr1:005988643	0.0	C/5988643-5988756,5988912-5988950,5989043-5989507,5989665-5989723,5989819-5990569,5990940-5991257,5991456-5991924,5992250-5992632,5992724-5992756,5992918-5993019,5993267-5993539,5993654-5993875,5993966-5994388,5994488-5995033,5995213-5995398,5995529-5995591,5995716-5995790,5995870-5996254,5996338-5996693	AT1G17450.1 CDS AT1G17450 ID=AT1G17450.1; Parent=AT1G17450; Name=AT1G17450.1; Note=B-block binding subunit of TFIIIC; conf_class=6; computational_description=B-block binding subunit of TFIIIC%3B CONTAINS InterPro DOMAIN/s: B-block binding subunit of TFIIIC (InterPro:IPR007309)%3B BEST Arabidopsis thaliana protein match is: B-block binding subunit of TFIIIC (TAIR:AT1G59453.1)%3B Has 94 Blast hits to 81 proteins in 18 species: Archae - 2%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 88%3B Viruses - 0%3B Other Eukaryotes - 4 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:15546358, locus:2018799; locus_type=protein_coding
AT1G17450.3	chr1:005988858	0.0	C/5988858-5988950,5989043-5989507,5989665-5989723,5989819-5990569,5990940-5991257,5991456-5991924,5992250-5992632,5992918-5993070,5993267-5993548,5993654-5994388,5994488-5995117,5995213-5995398,5995529-5995591,5995716-5995790,5995870-5996254,5996338-5996693	AT1G17450.3 CDS AT1G17450 ID=AT1G17450.3; Parent=AT1G17450; Name=AT1G17450.3; Note=B-block binding subunit of TFIIIC; computational_description=B-block binding subunit of TFIIIC%3B CONTAINS InterPro DOMAIN/s: B-block binding subunit of TFIIIC (InterPro:IPR007309)%3B BEST Arabidopsis thaliana protein match is: B-block binding subunit of TFIIIC (TAIR:AT1G59453.1)%3B Has 94 Blast hits to 81 proteins in 18 species: Archae - 2%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 88%3B Viruses - 0%3B Other Eukaryotes - 4 (source: NCBI BLink).; Dbxref=PMID:15546358, locus:2018799; locus_type=protein_coding
AT1G17455.1	chr1:005997932	0.0	W/5997932-5998276	AT1G17455.1 CDS AT1G17455 ID=AT1G17455.1; Parent=AT1G17455; Name=AT1G17455.1; Note=ELF4-like 4; conf_class=1; symbol=ELF4-L4; full_name=ELF4-like 4; computational_description=ELF4-like 4 (ELF4-L4)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1313 (InterPro:IPR009741)%3B BEST Arabidopsis thaliana protein match is: ELF4-like 2 (TAIR:AT1G72630.1)%3B Has 149 Blast hits to 148 proteins in 34 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 148%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15734916, PMID:14605220, PMID:18775970, locus:505006126; locus_type=protein_coding
AT1G17455.2	chr1:005997932	0.0	W/5997932-5998276	AT1G17455.2 CDS AT1G17455 ID=AT1G17455.2; Parent=AT1G17455; Name=AT1G17455.2; Note=ELF4-like 4; conf_class=2; symbol=ELF4-L4; full_name=ELF4-like 4; computational_description=ELF4-like 4 (ELF4-L4)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1313 (InterPro:IPR009741)%3B BEST Arabidopsis thaliana protein match is: ELF4-like 2 (TAIR:AT1G72630.1)%3B Has 149 Blast hits to 148 proteins in 34 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 148%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15734916, PMID:14605220, PMID:18775970, locus:505006126; locus_type=protein_coding
AT1TE19400	chr1:005999194	0.0	W/5999194-5999282	AT1TE19400 transposable_element AT1TE19400 ID=AT1TE19400; Name=AT1TE19400; Alias=ATCOPIA13
AT1G17460.1	chr1:005999519	0.0	W/5999519-5999638,5999777-5999951,6000287-6000345,6000469-6001320,6001534-6001668,6001909-6002184,6002266-6002310,6002394-6002546	AT1G17460.1 CDS AT1G17460 ID=AT1G17460.1; Parent=AT1G17460; Name=AT1G17460.1; Note=TRF-like 3; curator_summary=Arabidopsis thaliana myb family transcription factor (At1g17460); conf_class=1; symbol=TRFL3; full_name=TRF-like 3; computational_description=TRF-like 3 (TRFL3)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: cytosolic ribosome%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%2C Homeodomain-related (InterPro:IPR012287)%3B BEST Arabidopsis thaliana protein match is: TRF-like 6 (TAIR:AT1G72650.2)%3B Has 797 Blast hits to 787 proteins in 122 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 159%3B Fungi - 55%3B Plants - 510%3B Viruses - 0%3B Other Eukaryotes - 71 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15364931, PMID:16463103, PMID:17227549, PMID:17337630, PMID:18650403, locus:2018815; locus_type=protein_coding
AT1G17460.2	chr1:005999519	0.0	W/5999519-5999638,5999777-5999951,6000050-6000109,6000287-6000345,6000469-6001320,6001534-6001668,6001909-6002184,6002266-6002310,6002394-6002546	AT1G17460.2 CDS AT1G17460 ID=AT1G17460.2; Parent=AT1G17460; Name=AT1G17460.2; Note=TRF-like 3; curator_summary=Arabidopsis thaliana myb family transcription factor (At1g17460); conf_class=6; symbol=TRFL3; full_name=TRF-like 3; computational_description=TRF-like 3 (TRFL3)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: cytosolic ribosome%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%2C Homeodomain-related (InterPro:IPR012287)%3B BEST Arabidopsis thaliana protein match is: TRF-like 6 (TAIR:AT1G72650.2)%3B Has 797 Blast hits to 787 proteins in 122 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 159%3B Fungi - 55%3B Plants - 510%3B Viruses - 0%3B Other Eukaryotes - 71 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:15364931, PMID:16463103, PMID:17227549, PMID:17337630, PMID:18650403, locus:2018815; locus_type=protein_coding
AT1G17460.3	chr1:005999519	0.0	W/5999519-5999638,5999777-5999951,6000287-6000345,6000532-6001320,6001534-6001668,6001909-6002184,6002266-6002310,6002394-6002546	AT1G17460.3 CDS AT1G17460 ID=AT1G17460.3; Parent=AT1G17460; Name=AT1G17460.3; Note=TRF-like 3; symbol=TRFL3; full_name=TRF-like 3; curator_summary=Arabidopsis thaliana myb family transcription factor (At1g17460); computational_description=TRF-like 3 (TRFL3)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: cytosolic ribosome%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%2C Homeodomain-related (InterPro:IPR012287)%3B BEST Arabidopsis thaliana protein match is: TRF-like 6 (TAIR:AT1G72650.2)%3B Has 797 Blast hits to 787 proteins in 122 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 159%3B Fungi - 55%3B Plants - 510%3B Viruses - 0%3B Other Eukaryotes - 71 (source: NCBI BLink).; Dbxref=PMID:15364931, PMID:16463103, PMID:17227549, PMID:17337630, PMID:18650403, locus:2018815; locus_type=protein_coding
AT1G17470.1	chr1:006003442	0.0	W/6003442-6003511,6003747-6003814,6004121-6004197,6004329-6004509,6004634-6004690,6004786-6004860,6005014-6005133,6005262-6005432,6005577-6005690,6005776-6005946,6006060-6006155	AT1G17470.1 CDS AT1G17470 ID=AT1G17470.1; Parent=AT1G17470; Name=AT1G17470.1; Note=developmentally regulated G-protein 1; curator_summary=Encodes a member of the DRG (developmentally regulated G-protein) family expressed throughout the plant%2C with highest expression in actively growing tissues. Has GTPase activity.; conf_class=2; symbol=DRG1; Alias=ATDRG, ATDRG1, developmentally regulated G-protein 1, Drg1-2; full_name=developmentally regulated G-protein 1; computational_description=developmentally regulated G-protein 1 (DRG1)%3B CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225)%2C TGS (InterPro:IPR004095)%2C GTP1/OBG (InterPro:IPR006073)%2C GTP1/OBG%2C conserved site (InterPro:IPR006074)%2C GTP-binding protein%2C HSR1-related (InterPro:IPR002917)%3B BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G72660.3)%3B Has 20324 Blast hits to 20306 proteins in 2951 species: Archae - 770%3B Bacteria - 13313%3B Metazoa - 856%3B Fungi - 587%3B Plants - 375%3B Viruses - 0%3B Other Eukaryotes - 4423 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10380799, PMID:10080710, PMID:15272872, PMID:16712733, PMID:18775970, PMID:19460440, PMID:25566271, locus:2018826; locus_type=protein_coding
AT1G17470.2	chr1:006003442	0.0	W/6003442-6003511,6003747-6003814,6004121-6004197,6004329-6004509,6004634-6004690,6004786-6004860,6005014-6005133,6005262-6005432,6005577-6005690,6005776-6005946,6006060-6006155	AT1G17470.2 CDS AT1G17470 ID=AT1G17470.2; Parent=AT1G17470; Name=AT1G17470.2; Note=developmentally regulated G-protein 1; curator_summary=Encodes a member of the DRG (developmentally regulated G-protein) family expressed throughout the plant%2C with highest expression in actively growing tissues. Has GTPase activity.; conf_class=2; symbol=DRG1; Alias=ATDRG, ATDRG1, developmentally regulated G-protein 1, Drg1-2; full_name=developmentally regulated G-protein 1; computational_description=developmentally regulated G-protein 1 (DRG1)%3B CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225)%2C TGS (InterPro:IPR004095)%2C GTP1/OBG (InterPro:IPR006073)%2C GTP1/OBG%2C conserved site (InterPro:IPR006074)%2C GTP-binding protein%2C HSR1-related (InterPro:IPR002917)%3B BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G72660.3)%3B Has 20324 Blast hits to 20306 proteins in 2951 species: Archae - 770%3B Bacteria - 13313%3B Metazoa - 856%3B Fungi - 587%3B Plants - 375%3B Viruses - 0%3B Other Eukaryotes - 4423 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10380799, PMID:10080710, PMID:15272872, PMID:16712733, PMID:18775970, PMID:19460440, PMID:25566271, locus:2018826; locus_type=protein_coding
AT1G17480.1	chr1:006006675	0.0	C/6006675-6007157,6007237-6007350,6007426-6007620,6007735-6007995,6008070-6008132	AT1G17480.1 CDS AT1G17480 ID=AT1G17480.1; Parent=AT1G17480; Name=AT1G17480.1; Note=IQ-domain 7; conf_class=1; symbol=IQD7; full_name=IQ-domain 7; computational_description=IQ-domain 7 (IQD7)%3B CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048)%3B BEST Arabidopsis thaliana protein match is: IQ-domain 8 (TAIR:AT1G72670.1)%3B Has 807 Blast hits to 806 proteins in 36 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 22%3B Fungi - 5%3B Plants - 778%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16368012, locus:2018837; locus_type=protein_coding
AT1G17490.1	chr1:006008669	0.0	W/6008669-6008699,6008963-6009165	AT1G17490.1 CDS AT1G17490 ID=AT1G17490.1; Parent=AT1G17490; Name=AT1G17490.1; Note=epidermal patterning factor-like protein; conf_class=1; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72690.1)%3B Has 57 Blast hits to 45 proteins in 9 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 57%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:18650403, PMID:18805951, PMID:18775970, locus:2018843; locus_type=protein_coding
AT1TE19430	chr1:006009292	0.0	C/6009292-6014092	AT1TE19430 transposable_element AT1TE19430 ID=AT1TE19430; Name=AT1TE19430; Alias=ATCOPIA64
AT1G17495.1	chr1:006009570	0.0	C/6009570-6013742	AT1G17495.1 CDS AT1G17495 ID=AT1G17495.1; Parent=AT1G17495; Name=AT1G17495.1; index=1; computational_description=copia-like retrotransposon family%2C has a 4.7e-213 P-value blast match to gb|AAO73521.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family); Dbxref=locus:2825530; Note=transposable_element_gene; locus_type=transposable_element_gene
AT1TE19435	chr1:006014093	0.0	C/6014093-6014116	AT1TE19435 transposable_element AT1TE19435 ID=AT1TE19435; Name=AT1TE19435; Alias=ATCOPIA65
AT1G17500.1	chr1:006018757	0.0	W/6018757-6020531,6020616-6020726,6020819-6021095,6021181-6021269,6021350-6021434,6021524-6021733,6021829-6021954,6022064-6022162,6022257-6022448,6022515-6023201	AT1G17500.1 CDS AT1G17500 ID=AT1G17500.1; Parent=AT1G17500; Name=AT1G17500.1; Note=ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein; conf_class=2; computational_description=ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein%3B FUNCTIONS IN: ATPase activity%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism%3B INVOLVED IN: metabolic process%2C ATP biosynthetic process%2C phospholipid transport%3B LOCATED IN: integral to membrane%2C membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834)%2C ATPase%2C P-type%2C phospholipid-translocating%2C flippase (InterPro:IPR006539)%2C ATPase%2C P-type%2C ATPase-associated domain (InterPro:IPR008250)%2C ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757)%2C ATPase%2C P-type phosphorylation site (InterPro:IPR018303)%3B BEST Arabidopsis thaliana protein match is: ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (TAIR:AT1G72700.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11402198, PMID:23505340, locus:2007858; locus_type=protein_coding
AT1G17500.2	chr1:006018757	0.0	W/6018757-6020531,6020616-6020726,6020819-6021095,6021181-6021269,6021350-6021434,6021524-6021733,6021829-6021954,6022064-6022162,6022257-6022448,6022515-6023201	AT1G17500.2 CDS AT1G17500 ID=AT1G17500.2; Parent=AT1G17500; Name=AT1G17500.2; Note=ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein; Dbxref=PMID:11402198, PMID:23505340, locus:2007858; computational_description=ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein%3B FUNCTIONS IN: ATPase activity%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism%3B INVOLVED IN: metabolic process%2C ATP biosynthetic process%2C phospholipid transport%3B LOCATED IN: integral to membrane%2C membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834)%2C ATPase%2C P-type%2C phospholipid-translocating%2C flippase (InterPro:IPR006539)%2C ATPase%2C P-type%2C ATPase-associated domain (InterPro:IPR008250)%2C ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757)%2C ATPase%2C P-type phosphorylation site (InterPro:IPR018303)%3B BEST Arabidopsis thaliana protein match is: ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (TAIR:AT1G72700.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; locus_type=protein_coding
AT1G17510.1	chr1:006023704	0.0	C/6023704-6023865,6024005-6024211	AT1G17510.1 CDS AT1G17510 ID=AT1G17510.1; Parent=AT1G17510; Name=AT1G17510.1; Note=hypothetical protein; conf_class=2; computational_description=unknown protein%3B Has 11 Blast hits to 11 proteins in 4 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 11%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18650403, locus:2007868; locus_type=protein_coding
AT1G17520.1	chr1:006024959	0.0	C/6024959-6024990,6025093-6025378,6025505-6025606,6026078-6026162,6026293-6026528,6027075-6027224	AT1G17520.1 CDS AT1G17520 ID=AT1G17520.1; Parent=AT1G17520; Name=AT1G17520.1; Note=Homeodomain-like/winged-helix DNA-binding family protein; conf_class=2; computational_description=Homeodomain-like/winged-helix DNA-binding family protein%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: in 6 processes%3B LOCATED IN: nucleus%2C nucleosome%3B EXPRESSED IN: 11 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991)%2C SANT%2C DNA-binding (InterPro:IPR001005)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C Homeodomain-like (InterPro:IPR009057)%2C Histone H1/H5 (InterPro:IPR005818)%2C Homeodomain-related (InterPro:IPR012287)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%3B BEST Arabidopsis thaliana protein match is: Homeodomain-like/winged-helix DNA-binding family protein (TAIR:AT1G72740.1)%3B Has 882 Blast hits to 875 proteins in 156 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 109%3B Fungi - 89%3B Plants - 618%3B Viruses - 0%3B Other Eukaryotes - 66 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:15489532, PMID:16463103, PMID:24377444, locus:2007878; locus_type=protein_coding
AT1G17520.2	chr1:006024959	0.0	C/6024959-6024990,6025093-6025378,6025505-6025609,6026078-6026162,6026293-6026528,6027075-6027224	AT1G17520.2 CDS AT1G17520 ID=AT1G17520.2; Parent=AT1G17520; Name=AT1G17520.2; Note=Homeodomain-like/winged-helix DNA-binding family protein; computational_description=Homeodomain-like/winged-helix DNA-binding family protein%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: in 6 processes%3B LOCATED IN: nucleus%2C nucleosome%3B EXPRESSED IN: 11 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991)%2C SANT%2C DNA-binding (InterPro:IPR001005)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C Homeodomain-like (InterPro:IPR009057)%2C Histone H1/H5 (InterPro:IPR005818)%2C Homeodomain-related (InterPro:IPR012287)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%3B BEST Arabidopsis thaliana protein match is: Homeodomain-like/winged-helix DNA-binding family protein (TAIR:AT1G72740.1)%3B Has 882 Blast hits to 875 proteins in 156 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 109%3B Fungi - 89%3B Plants - 618%3B Viruses - 0%3B Other Eukaryotes - 66 (source: NCBI BLink).; Dbxref=PMID:11118137, PMID:15489532, PMID:16463103, PMID:24377444, locus:2007878; locus_type=protein_coding
AT1G17520.3	chr1:006024959	0.0	C/6024959-6024990,6025093-6025378,6025523-6025609,6026078-6026162,6026293-6026528,6027075-6027224	AT1G17520.3 CDS AT1G17520 ID=AT1G17520.3; Parent=AT1G17520; Name=AT1G17520.3; Note=Homeodomain-like/winged-helix DNA-binding family protein; computational_description=Homeodomain-like/winged-helix DNA-binding family protein%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: in 6 processes%3B LOCATED IN: nucleus%2C nucleosome%3B EXPRESSED IN: 11 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991)%2C SANT%2C DNA-binding (InterPro:IPR001005)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C Homeodomain-like (InterPro:IPR009057)%2C Histone H1/H5 (InterPro:IPR005818)%2C Homeodomain-related (InterPro:IPR012287)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%3B BEST Arabidopsis thaliana protein match is: Homeodomain-like/winged-helix DNA-binding family protein (TAIR:AT1G72740.1)%3B Has 882 Blast hits to 875 proteins in 156 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 109%3B Fungi - 89%3B Plants - 618%3B Viruses - 0%3B Other Eukaryotes - 66 (source: NCBI BLink).; Dbxref=PMID:11118137, PMID:15489532, PMID:16463103, PMID:24377444, locus:2007878; locus_type=protein_coding
AT1G17520.4	chr1:006024959	0.0	C/6024959-6024990,6025093-6025378,6025523-6025606,6026078-6026162,6026293-6026528,6027075-6027224	AT1G17520.4 CDS AT1G17520 ID=AT1G17520.4; Parent=AT1G17520; Name=AT1G17520.4; Note=Homeodomain-like/winged-helix DNA-binding family protein; computational_description=Homeodomain-like/winged-helix DNA-binding family protein%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: in 6 processes%3B LOCATED IN: nucleus%2C nucleosome%3B EXPRESSED IN: 11 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991)%2C SANT%2C DNA-binding (InterPro:IPR001005)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C Homeodomain-like (InterPro:IPR009057)%2C Histone H1/H5 (InterPro:IPR005818)%2C Homeodomain-related (InterPro:IPR012287)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%3B BEST Arabidopsis thaliana protein match is: Homeodomain-like/winged-helix DNA-binding family protein (TAIR:AT1G72740.1)%3B Has 882 Blast hits to 875 proteins in 156 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 109%3B Fungi - 89%3B Plants - 618%3B Viruses - 0%3B Other Eukaryotes - 66 (source: NCBI BLink).; Dbxref=PMID:11118137, PMID:15489532, PMID:16463103, PMID:24377444, locus:2007878; locus_type=protein_coding
AT1G17530.1	chr1:006027723	0.0	W/6027723-6028286	AT1G17530.1 CDS AT1G17530 ID=AT1G17530.1; Parent=AT1G17530; Name=AT1G17530.1; Note=translocase of inner mitochondrial membrane 23; curator_summary=Encodes a translocase of inner mitochondrial membrane.; conf_class=1; symbol=TIM23-1; Alias=ATTIM23-1, translocase of inner mitochondrial membrane 23; full_name=translocase of inner mitochondrial membrane 23; computational_description=translocase of inner mitochondrial membrane 23 (TIM23-1)%3B CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane translocase complex%2C subunit Tim23 (InterPro:IPR005681)%2C Mitochondrial inner membrane translocase complex%2C subunit Tim17/22 (InterPro:IPR003397)%3B BEST Arabidopsis thaliana protein match is: translocase inner membrane subunit 23-2 (TAIR:AT1G72750.1)%3B Has 791 Blast hits to 791 proteins in 192 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 393%3B Fungi - 198%3B Plants - 139%3B Viruses - 0%3B Other Eukaryotes - 61 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12692332, PMID:14730085, PMID:18650403, PMID:18775970, locus:2007893; locus_type=protein_coding
AT1G17530.2	chr1:006027723	0.0	W/6027723-6028270,6028907-6028910	AT1G17530.2 CDS AT1G17530 ID=AT1G17530.2; Parent=AT1G17530; Name=AT1G17530.2; Note=translocase of inner mitochondrial membrane 23; symbol=TIM23-1; Alias=ATTIM23-1, translocase of inner mitochondrial membrane 23; full_name=translocase of inner mitochondrial membrane 23; curator_summary=Encodes a translocase of inner mitochondrial membrane.; computational_description=translocase of inner mitochondrial membrane 23 (TIM23-1)%3B CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane translocase complex%2C subunit Tim23 (InterPro:IPR005681)%2C Mitochondrial inner membrane translocase complex%2C subunit Tim17/22 (InterPro:IPR003397)%3B BEST Arabidopsis thaliana protein match is: translocase inner membrane subunit 23-2 (TAIR:AT1G72750.1)%3B Has 791 Blast hits to 791 proteins in 192 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 393%3B Fungi - 198%3B Plants - 139%3B Viruses - 0%3B Other Eukaryotes - 61 (source: NCBI BLink).; Dbxref=PMID:12692332, PMID:14730085, PMID:18650403, PMID:18775970, locus:2007893; locus_type=protein_coding
AT1G17540.1	chr1:006029551	0.0	C/6029551-6029607,6029714-6030123,6030212-6030575,6030654-6031061,6031159-6031236,6031341-6031397,6031479-6031662,6031753-6032004,6032094-6032215,6032315-6032412,6032485-6032641	AT1G17540.1 CDS AT1G17540 ID=AT1G17540.1; Parent=AT1G17540; Name=AT1G17540.1; Note=kinase with adenine nucleotide alpha hydrolases-like domain-containing protein; conf_class=1; computational_description=Protein kinase protein with adenine nucleotide alpha hydrolases-like domain%3B FUNCTIONS IN: kinase activity%3B INVOLVED IN: protein amino acid phosphorylation%2C response to stress%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 9 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%2C C globular stage%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729)%2C UspA (InterPro:IPR006016)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G72760.1)%3B Has 111948 Blast hits to 110754 proteins in 4644 species: Archae - 110%3B Bacteria - 12962%3B Metazoa - 41520%3B Fungi - 9180%3B Plants - 32064%3B Viruses - 278%3B Other Eukaryotes - 15834 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12644671, PMID:16291648, PMID:17071640, PMID:18775970, PMID:20736450, locus:2007908; locus_type=protein_coding
AT1G17545.1	chr1:006033109	0.0	W/6033109-6033124,6033307-6033509,6033588-6033908	AT1G17545.1 CDS AT1G17545 ID=AT1G17545.1; Parent=AT1G17545; Name=AT1G17545.1; Note=Protein phosphatase 2C family protein; conf_class=9; computational_description=Protein phosphatase 2C family protein%3B FUNCTIONS IN: catalytic activity%3B INVOLVED IN: biological_process unknown%3B CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932)%2C Protein phosphatase 2C (InterPro:IPR015655)%2C Protein phosphatase 2C%2C N-terminal (InterPro:IPR014045)%3B BEST Arabidopsis thaliana protein match is: homology to ABI1 (TAIR:AT1G72770.2)%3B Has 482 Blast hits to 481 proteins in 45 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 7%3B Fungi - 0%3B Plants - 471%3B Viruses - 0%3B Other Eukaryotes - 4 (source: NCBI BLink).; conf_rating=*; Dbxref=PMID:16856987, locus:2823988; locus_type=protein_coding
AT1G17550.1	chr1:006034917	0.0	W/6034917-6035660,6035859-6036209,6036305-6036410,6036605-6036939	AT1G17550.1 CDS AT1G17550 ID=AT1G17550.1; Parent=AT1G17550; Name=AT1G17550.1; Note=homology to ABI2; curator_summary=Protein Phosphatase 2C; conf_class=2; symbol=HAB2; Alias=AtHAB2; full_name=homology to ABI2; computational_description=homology to ABI2 (HAB2)%3B FUNCTIONS IN: protein serine/threonine phosphatase activity%2C catalytic activity%3B INVOLVED IN: protein amino acid dephosphorylation%3B LOCATED IN: protein serine/threonine phosphatase complex%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (InterPro:IPR000222)%2C Protein phosphatase 2C-related (InterPro:IPR001932)%2C Protein phosphatase 2C (InterPro:IPR015655)%2C Protein phosphatase 2C%2C N-terminal (InterPro:IPR014045)%3B BEST Arabidopsis thaliana protein match is: homology to ABI1 (TAIR:AT1G72770.3)%3B Has 6552 Blast hits to 6537 proteins in 424 species: Archae - 4%3B Bacteria - 229%3B Metazoa - 1602%3B Fungi - 744%3B Plants - 2705%3B Viruses - 7%3B Other Eukaryotes - 1261 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12068129, PMID:12970481, PMID:14666423, PMID:15130549, PMID:17038189, PMID:18162593, PMID:18156295, PMID:18775970, PMID:19021904, PMID:23437216, PMID:23370718, locus:2007943; locus_type=protein_coding
AT1G17550.2	chr1:006034917	0.0	W/6034917-6035660,6035859-6036209,6036305-6036410,6036605-6036939	AT1G17550.2 CDS AT1G17550 ID=AT1G17550.2; Parent=AT1G17550; Name=AT1G17550.2; Note=homology to ABI2; symbol=HAB2; Alias=AtHAB2; full_name=homology to ABI2; Dbxref=PMID:12068129, PMID:12970481, PMID:14666423, PMID:15130549, PMID:17038189, PMID:18162593, PMID:18156295, PMID:18775970, PMID:19021904, PMID:23437216, PMID:23370718, locus:2007943; curator_summary=Protein Phosphatase 2C; computational_description=homology to ABI2 (HAB2)%3B FUNCTIONS IN: protein serine/threonine phosphatase activity%2C catalytic activity%3B INVOLVED IN: protein amino acid dephosphorylation%3B LOCATED IN: protein serine/threonine phosphatase complex%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (InterPro:IPR000222)%2C Protein phosphatase 2C-related (InterPro:IPR001932)%2C Protein phosphatase 2C (InterPro:IPR015655)%2C Protein phosphatase 2C%2C N-terminal (InterPro:IPR014045)%3B BEST Arabidopsis thaliana protein match is: homology to ABI1 (TAIR:AT1G72770.3)%3B Has 6552 Blast hits to 6537 proteins in 424 species: Archae - 4%3B Bacteria - 229%3B Metazoa - 1602%3B Fungi - 744%3B Plants - 2705%3B Viruses - 7%3B Other Eukaryotes - 1261 (source: NCBI BLink).; locus_type=protein_coding
AT1G17560.1	chr1:006037635	0.0	C/6037635-6038099,6038205-6038296,6038541-6038574	AT1G17560.1 CDS AT1G17560 ID=AT1G17560.1; Parent=AT1G17560; Name=AT1G17560.1; Note=Ribosomal protein L14p/L23e family protein; curator_summary=Encodes HUELLENLOS (HLL)%2C a mitochondrial ribosome protein%2C similar to L14 ribosomal protein of eubacteria. HLL is essential for normal ovule development.; conf_class=1; symbol=HLL; full_name=HUELLENLOS; computational_description=HUELLENLOS (HLL)%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%3B LOCATED IN: ribosome%2C intracellular%2C large ribosomal subunit%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L14%2C bacterial-type (InterPro:IPR005745)%2C Ribosomal protein L14b/L23e (InterPro:IPR000218)%2C Ribosomal protein L14 conserved site (InterPro:IPR019972)%3B BEST Arabidopsis thaliana protein match is: Ribosomal protein L14p/L23e family protein (TAIR:AT5G46160.2)%3B Has 9401 Blast hits to 9401 proteins in 3194 species: Archae - 306%3B Bacteria - 5487%3B Metazoa - 280%3B Fungi - 278%3B Plants - 760%3B Viruses - 0%3B Other Eukaryotes - 2290 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:10835408, PMID:10601041, PMID:9636071, PMID:11752383, PMID:16368778, PMID:22914576, locus:2007913; locus_type=protein_coding
AT1G17560.2	chr1:006037635	0.0	C/6037635-6038156	AT1G17560.2 CDS AT1G17560 ID=AT1G17560.2; Parent=AT1G17560; Name=AT1G17560.2; Note=Ribosomal protein L14p/L23e family protein; symbol=HLL; full_name=HUELLENLOS; curator_summary=Encodes HUELLENLOS (HLL)%2C a mitochondrial ribosome protein%2C similar to L14 ribosomal protein of eubacteria. HLL is essential for normal ovule development.; computational_description=HUELLENLOS (HLL)%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%3B LOCATED IN: ribosome%2C intracellular%2C large ribosomal subunit%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L14%2C bacterial-type (InterPro:IPR005745)%2C Ribosomal protein L14b/L23e (InterPro:IPR000218)%2C Ribosomal protein L14 conserved site (InterPro:IPR019972)%3B BEST Arabidopsis thaliana protein match is: Ribosomal protein L14p/L23e family protein (TAIR:AT5G46160.2)%3B Has 9401 Blast hits to 9401 proteins in 3194 species: Archae - 306%3B Bacteria - 5487%3B Metazoa - 280%3B Fungi - 278%3B Plants - 760%3B Viruses - 0%3B Other Eukaryotes - 2290 (source: NCBI BLink).; Dbxref=PMID:10835408, PMID:10601041, PMID:9636071, PMID:11752383, PMID:16368778, PMID:22914576, locus:2007913; locus_type=protein_coding
AT1G17570.1	chr1:006038757	0.0	W/6038757-6038838	AT1G17570.1 tRNA AT1G17570 ID=AT1G17570.1; Parent=AT1G17570; Note=tRNA-Ser; computational_description=tRNA-Ser (anticodon: AGA); Dbxref=PMID:8980477, PMID:23066098, PMID:8980477, locus:3686090; Name=AT1G17570.1; locus_type=pre_trna
AT1G17580.1	chr1:006039453	0.0	W/6039453-6039455,6039835-6039960,6040579-6040716,6040824-6040969,6041059-6041215,6041305-6041363,6041569-6041728,6041834-6041983,6042071-6042207,6042317-6042463,6042555-6042656,6042966-6043023,6043112-6043213,6043373-6043410,6043493-6043619,6043708-6043878,6043957-6044088,6044298-6044407,6044505-6044565,6044778-6044955,6045145-6045350,6045464-6045583,6045681-6045779,6045899-6046117,6046319-6046458,6046673-6046790,6046874-6046924,6047006-6047056,6047170-6047340,6047424-6047579,6047663-6047872,6047984-6048130,6048234-6048304,6048387-6048486,6048565-6048678,6048757-6048837,6049003-6049085,6049186-6049309	AT1G17580.1 CDS AT1G17580 ID=AT1G17580.1; Parent=AT1G17580; Name=AT1G17580.1; Note=myosin 1; curator_summary=Encodes a member of the type XI myosin protein family involved in organelle trafficking and overall plant development.; conf_class=2; symbol=MYA1; Alias=ATMYA1, ARABIDOPSIS MYOSIN 1, XI-1, MYOSIN XI 1; full_name=myosin 1; computational_description=myosin 1 (MYA1)%3B FUNCTIONS IN: motor activity%3B INVOLVED IN: in 8 processes%3B LOCATED IN: myosin complex%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444)%2C Dilute (InterPro:IPR002710)%2C Myosin%2C N-terminal%2C SH3-like (InterPro:IPR004009)%2C Myosin head%2C motor domain (InterPro:IPR001609)%2C IQ calmodulin-binding region (InterPro:IPR000048)%3B BEST Arabidopsis thaliana protein match is: Myosin family protein with Dil domain (TAIR:AT5G20490.1)%3B Has 18995 Blast hits to 13821 proteins in 1312 species: Archae - 114%3B Bacteria - 980%3B Metazoa - 11844%3B Fungi - 1348%3B Plants - 1046%3B Viruses - 13%3B Other Eukaryotes - 3650 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:8884597, PMID:7811972, PMID:8006972, PMID:11516337, PMID:17288617, PMID:17504816, PMID:17500056, PMID:18178669, PMID:18429938, PMID:19060218, PMID:19369591, PMID:20581304, PMID:20736450, PMID:21284606, PMID:21914656, PMID:22672737, PMID:23995081, PMID:25237128, PMID:25201952, locus:2007938; locus_type=protein_coding
AT1G17590.1	chr1:006050481	0.0	C/6050481-6050852,6050932-6051087,6051295-6051369,6051451-6051551,6051702-6051984	AT1G17590.1 CDS AT1G17590 ID=AT1G17590.1; Parent=AT1G17590; Name=AT1G17590.1; Note=nuclear factor Y%2C subunit A8; conf_class=2; symbol=NF-YA8; full_name=nuclear factor Y%2C subunit A8; computational_description=nuclear factor Y%2C subunit A8 (NF-YA8)%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B LOCATED IN: CCAAT-binding factor complex%2C nucleus%2C chloroplast%3B EXPRESSED IN: 8 plant structures%3B EXPRESSED DURING: petal differentiation and expansion stage%2C E expanded cotyledon stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor%2C subunit B (InterPro:IPR001289)%2C CCAAT-binding factor%2C conserved site (InterPro:IPR018362)%3B BEST Arabidopsis thaliana protein match is: nuclear factor Y%2C subunit A3 (TAIR:AT1G72830.1)%3B Has 686 Blast hits to 686 proteins in 162 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 143%3B Fungi - 132%3B Plants - 381%3B Viruses - 0%3B Other Eukaryotes - 28 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:14576160, PMID:15258262, PMID:16798886, PMID:20226671, PMID:24377444, PMID:24303077, locus:2007953; locus_type=protein_coding
AT1G17590.2	chr1:006050481	0.0	C/6050481-6050852,6050932-6051087,6051295-6051369,6051451-6051551,6051702-6051984	AT1G17590.2 CDS AT1G17590 ID=AT1G17590.2; Parent=AT1G17590; Name=AT1G17590.2; Note=nuclear factor Y%2C subunit A8; conf_class=2; symbol=NF-YA8; full_name=nuclear factor Y%2C subunit A8; computational_description=nuclear factor Y%2C subunit A8 (NF-YA8)%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B LOCATED IN: CCAAT-binding factor complex%2C nucleus%2C chloroplast%3B EXPRESSED IN: 8 plant structures%3B EXPRESSED DURING: petal differentiation and expansion stage%2C E expanded cotyledon stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor%2C subunit B (InterPro:IPR001289)%2C CCAAT-binding factor%2C conserved site (InterPro:IPR018362)%3B BEST Arabidopsis thaliana protein match is: nuclear factor Y%2C subunit A3 (TAIR:AT1G72830.1)%3B Has 686 Blast hits to 686 proteins in 162 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 143%3B Fungi - 132%3B Plants - 381%3B Viruses - 0%3B Other Eukaryotes - 28 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:14576160, PMID:15258262, PMID:16798886, PMID:20226671, PMID:24377444, PMID:24303077, locus:2007953; locus_type=protein_coding
AT1G17590.3	chr1:006050481	0.0	C/6050481-6050852,6050932-6051087,6051295-6051369,6051451-6051551,6051702-6051984	AT1G17590.3 CDS AT1G17590 ID=AT1G17590.3; Parent=AT1G17590; Name=AT1G17590.3; Note=nuclear factor Y%2C subunit A8; conf_class=2; symbol=NF-YA8; full_name=nuclear factor Y%2C subunit A8; computational_description=nuclear factor Y%2C subunit A8 (NF-YA8)%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B LOCATED IN: CCAAT-binding factor complex%2C nucleus%2C chloroplast%3B EXPRESSED IN: 8 plant structures%3B EXPRESSED DURING: petal differentiation and expansion stage%2C E expanded cotyledon stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor%2C subunit B (InterPro:IPR001289)%2C CCAAT-binding factor%2C conserved site (InterPro:IPR018362)%3B BEST Arabidopsis thaliana protein match is: nuclear factor Y%2C subunit A3 (TAIR:AT1G72830.1)%3B Has 686 Blast hits to 686 proteins in 162 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 143%3B Fungi - 132%3B Plants - 381%3B Viruses - 0%3B Other Eukaryotes - 28 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:14576160, PMID:15258262, PMID:16798886, PMID:20226671, PMID:24377444, PMID:24303077, locus:2007953; locus_type=protein_coding
AT1G17590.4	chr1:006050481	0.0	C/6050481-6050852,6050932-6051087,6051295-6051369,6051451-6051551,6051702-6051984	AT1G17590.4 CDS AT1G17590 ID=AT1G17590.4; Parent=AT1G17590; Name=AT1G17590.4; Note=nuclear factor Y%2C subunit A8; conf_class=4; symbol=NF-YA8; full_name=nuclear factor Y%2C subunit A8; computational_description=nuclear factor Y%2C subunit A8 (NF-YA8)%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B LOCATED IN: CCAAT-binding factor complex%2C nucleus%2C chloroplast%3B EXPRESSED IN: 8 plant structures%3B EXPRESSED DURING: petal differentiation and expansion stage%2C E expanded cotyledon stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor%2C subunit B (InterPro:IPR001289)%2C CCAAT-binding factor%2C conserved site (InterPro:IPR018362)%3B BEST Arabidopsis thaliana protein match is: nuclear factor Y%2C subunit A3 (TAIR:AT1G72830.1)%3B Has 686 Blast hits to 686 proteins in 162 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 143%3B Fungi - 132%3B Plants - 381%3B Viruses - 0%3B Other Eukaryotes - 28 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:11118137, PMID:14576160, PMID:15258262, PMID:16798886, PMID:20226671, PMID:24377444, PMID:24303077, locus:2007953; locus_type=protein_coding
AT1G17600.1	chr1:006053026	0.0	C/6053026-6053214,6053289-6054380,6054505-6054807,6054908-6056009,6056109-6056572	AT1G17600.1 CDS AT1G17600 ID=AT1G17600.1; Parent=AT1G17600; Name=AT1G17600.1; Note=Disease resistance protein (TIR-NBS-LRR class) family; conf_class=6; computational_description=Disease resistance protein (TIR-NBS-LRR class) family%3B FUNCTIONS IN: transmembrane receptor activity%2C ATP binding%3B INVOLVED IN: signal transduction%2C defense response%2C apoptosis%2C innate immune response%3B LOCATED IN: intrinsic to membrane%3B EXPRESSED IN: leaf whorl%2C leaf%3B EXPRESSED DURING: LP.10 ten leaves visible%3B CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182)%2C Toll-Interleukin receptor (InterPro:IPR000157)%2C Disease resistance protein (InterPro:IPR000767)%3B BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G40100.1)%3B Has 24331 Blast hits to 16604 proteins in 714 species: Archae - 19%3B Bacteria - 1452%3B Metazoa - 3934%3B Fungi - 232%3B Plants - 17994%3B Viruses - 0%3B Other Eukaryotes - 700 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:16798885, PMID:16915523, PMID:17956627, locus:2007863; locus_type=protein_coding
AT1G17610.1	chr1:006056895	0.0	W/6056895-6058157	AT1G17610.1 CDS AT1G17610 ID=AT1G17610.1; Parent=AT1G17610; Name=AT1G17610.1; Note=Disease resistance protein (TIR-NBS class); curator_summary=Mutant accumulates steryl-esters at low temperature.; conf_class=1; Alias=CHS1, CHILLING SENSITIVE 1; computational_description=Disease resistance protein (TIR-NBS class)%3B FUNCTIONS IN: transmembrane receptor activity%2C ATP binding%3B INVOLVED IN: signal transduction%2C apoptosis%2C defense response%2C innate immune response%3B LOCATED IN: intrinsic to membrane%2C endomembrane system%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182)%2C Disease resistance protein (InterPro:IPR000767)%2C Toll-Interleukin receptor (InterPro:IPR000157)%3B BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS class) (TAIR:AT5G40090.1)%3B Has 6872 Blast hits to 6811 proteins in 238 species: Archae - 0%3B Bacteria - 42%3B Metazoa - 2%3B Fungi - 5%3B Plants - 6813%3B Viruses - 0%3B Other Eukaryotes - 10 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:10811971, PMID:12366802, PMID:12671079, PMID:17956627, PMID:23617639, PMID:23651299, locus:2007873; locus_type=protein_coding
AT1G17610.2	chr1:006056895	0.0	W/6056895-6058157	AT1G17610.2 CDS AT1G17610 ID=AT1G17610.2; Parent=AT1G17610; Name=AT1G17610.2; Note=Disease resistance protein (TIR-NBS class); Alias=CHS1, CHILLING SENSITIVE 1; Dbxref=PMID:10811971, PMID:12366802, PMID:12671079, PMID:17956627, PMID:23617639, PMID:23651299, locus:2007873; curator_summary=Mutant accumulates steryl-esters at low temperature.; computational_description=Disease resistance protein (TIR-NBS class)%3B FUNCTIONS IN: transmembrane receptor activity%2C ATP binding%3B INVOLVED IN: signal transduction%2C apoptosis%2C defense response%2C innate immune response%3B LOCATED IN: intrinsic to membrane%2C endomembrane system%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182)%2C Disease resistance protein (InterPro:IPR000767)%2C Toll-Interleukin receptor (InterPro:IPR000157)%3B BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS class) (TAIR:AT5G40090.1)%3B Has 6872 Blast hits to 6811 proteins in 238 species: Archae - 0%3B Bacteria - 42%3B Metazoa - 2%3B Fungi - 5%3B Plants - 6813%3B Viruses - 0%3B Other Eukaryotes - 10 (source: NCBI BLink).; locus_type=protein_coding
AT1G17615.1	chr1:006059441	0.0	W/6059441-6059919,6060004-6060667	AT1G17615.1 CDS AT1G17615 ID=AT1G17615.1; Parent=AT1G17615; Name=AT1G17615.1; Note=Disease resistance protein (TIR-NBS class); conf_class=1; computational_description=Disease resistance protein (TIR-NBS class)%3B FUNCTIONS IN: transmembrane receptor activity%2C ATP binding%3B INVOLVED IN: signal transduction%2C defense response%2C apoptosis%2C innate immune response%3B LOCATED IN: intrinsic to membrane%3B CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182)%2C Toll-Interleukin receptor (InterPro:IPR000157)%3B BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS class) (TAIR:AT1G72950.1)%3B Has 4595 Blast hits to 4465 proteins in 213 species: Archae - 2%3B Bacteria - 136%3B Metazoa - 33%3B Fungi - 0%3B Plants - 4419%3B Viruses - 0%3B Other Eukaryotes - 5 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12366802, PMID:17956627, locus:2823998; locus_type=protein_coding
AT1G17620.1	chr1:006062313	0.0	W/6062313-6063107	AT1G17620.1 CDS AT1G17620 ID=AT1G17620.1; Parent=AT1G17620; Name=AT1G17620.1; Note=Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; conf_class=1; computational_description=Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein%2C group 2 (InterPro:IPR004864)%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11890.1)%3B Has 824 Blast hits to 823 proteins in 28 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 824%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14666423, locus:2007968; locus_type=protein_coding
AT1G17630.1	chr1:006064525	0.0	W/6064525-6066720	AT1G17630.1 CDS AT1G17630 ID=AT1G17630.1; Parent=AT1G17630; Name=AT1G17630.1; Note=Pentatricopeptide repeat (PPR-like) superfamily protein; conf_class=8; computational_description=Pentatricopeptide repeat (PPR-like) superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G20230.1)%3B Has 40851 Blast hits to 13793 proteins in 242 species: Archae - 0%3B Bacteria - 7%3B Metazoa - 93%3B Fungi - 89%3B Plants - 40145%3B Viruses - 0%3B Other Eukaryotes - 517 (source: NCBI BLink).; conf_rating=*; Dbxref=PMID:15565108, PMID:17521445, locus:2007888; locus_type=protein_coding
AT1G17630.2	chr1:006064525	0.0	W/6064525-6066720	AT1G17630.2 CDS AT1G17630 ID=AT1G17630.2; Parent=AT1G17630; Name=AT1G17630.2; Note=Pentatricopeptide repeat (PPR-like) superfamily protein; Dbxref=PMID:15565108, PMID:17521445, locus:2007888; computational_description=Pentatricopeptide repeat (PPR-like) superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G20230.1)%3B Has 40851 Blast hits to 13793 proteins in 242 species: Archae - 0%3B Bacteria - 7%3B Metazoa - 93%3B Fungi - 89%3B Plants - 40145%3B Viruses - 0%3B Other Eukaryotes - 517 (source: NCBI BLink).; locus_type=protein_coding
AT1G17640.1	chr1:006067394	0.0	C/6067394-6067822,6067906-6068075,6068152-6068260,6068355-6068518,6068730-6068770,6068902-6069098	AT1G17640.1 CDS AT1G17640 ID=AT1G17640.1; Parent=AT1G17640; Name=AT1G17640.1; Note=RNA-binding (RRM/RBD/RNP motifs) family protein; conf_class=3; computational_description=RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 15 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G13224.2)%3B Has 513802 Blast hits to 488537 proteins in 21806 species: Archae - 10521%3B Bacteria - 302893%3B Metazoa - 102492%3B Fungi - 14718%3B Plants - 34458%3B Viruses - 34904%3B Other Eukaryotes - 13816 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:20736450, locus:2007903; locus_type=protein_coding
AT1G17640.2	chr1:006067394	0.0	C/6067394-6067822,6067906-6068075,6068152-6068260,6068355-6068518,6068730-6068770,6068902-6069098	AT1G17640.2 CDS AT1G17640 ID=AT1G17640.2; Parent=AT1G17640; Name=AT1G17640.2; Note=RNA-binding (RRM/RBD/RNP motifs) family protein; Dbxref=PMID:20736450, locus:2007903; computational_description=RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 15 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G13224.2)%3B Has 513802 Blast hits to 488537 proteins in 21806 species: Archae - 10521%3B Bacteria - 302893%3B Metazoa - 102492%3B Fungi - 14718%3B Plants - 34458%3B Viruses - 34904%3B Other Eukaryotes - 13816 (source: NCBI BLink).; locus_type=protein_coding
AT1G17640.3	chr1:006067394	0.0	C/6067394-6067822,6067906-6068075,6068152-6068260,6068355-6068518,6068730-6068770,6068902-6069098	AT1G17640.3 CDS AT1G17640 ID=AT1G17640.3; Parent=AT1G17640; Name=AT1G17640.3; Note=RNA-binding (RRM/RBD/RNP motifs) family protein; Dbxref=PMID:20736450, locus:2007903; computational_description=RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 15 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G13224.2)%3B Has 513802 Blast hits to 488537 proteins in 21806 species: Archae - 10521%3B Bacteria - 302893%3B Metazoa - 102492%3B Fungi - 14718%3B Plants - 34458%3B Viruses - 34904%3B Other Eukaryotes - 13816 (source: NCBI BLink).; locus_type=protein_coding
AT1G17650.1	chr1:006069594	0.0	C/6069594-6069758,6069849-6069953,6070030-6070102,6070185-6070255,6070344-6070396,6070559-6070619,6070713-6070797,6070985-6071040,6071128-6071203,6071317-6071382,6071500-6071581,6071781-6071964	AT1G17650.1 CDS AT1G17650 ID=AT1G17650.1; Parent=AT1G17650; Name=AT1G17650.1; Note=glyoxylate reductase 2; curator_summary=Glyoxylate reductase located in chloroplasts.; conf_class=3; symbol=GLYR2; Alias=AtGLYR2, GR2, GLYOXYLATE REDUCTASE 2; full_name=glyoxylate reductase 2; computational_description=glyoxylate reductase 2 (GLYR2)%3B FUNCTIONS IN: phosphogluconate dehydrogenase (decarboxylating) activity%2C glyoxylate reductase (NADP) activity%3B INVOLVED IN: oxidation reduction%2C pentose-phosphate shunt%2C metabolic process%3B LOCATED IN: chloroplast stroma%2C chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: 6-phosphogluconate dehydrogenase%2C NAD-binding (InterPro:IPR006115)%2C Dehydrogenase%2C multihelical (InterPro:IPR013328)%2C 6-phosphogluconate dehydrogenase%2C C-terminal-like (InterPro:IPR008927)%2C 3-hydroxyacid dehydrogenase/reductase (InterPro:IPR015815)%2C NAD(P)-binding domain (InterPro:IPR016040)%3B BEST Arabidopsis thaliana protein match is: glyoxylate reductase 1 (TAIR:AT3G25530.1)%3B Has 16115 Blast hits to 16085 proteins in 2099 species: Archae - 147%3B Bacteria - 9815%3B Metazoa - 317%3B Fungi - 434%3B Plants - 311%3B Viruses - 1%3B Other Eukaryotes - 5090 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15937229, PMID:17580301, PMID:18495640, PMID:18650403, PMID:19740079, PMID:22309191, PMID:24076009, locus:2007923; locus_type=protein_coding
AT1G17650.2	chr1:006069594	0.0	C/6069594-6069758,6069849-6069953,6070030-6070102,6070185-6070255,6070344-6070396,6070559-6070619,6070713-6070797,6070985-6071040,6071128-6071203,6071317-6071382,6071500-6071588	AT1G17650.2 CDS AT1G17650 ID=AT1G17650.2; Parent=AT1G17650; Name=AT1G17650.2; Note=glyoxylate reductase 2; symbol=GLYR2; Alias=AtGLYR2, GR2, GLYOXYLATE REDUCTASE 2; full_name=glyoxylate reductase 2; curator_summary=Glyoxylate reductase located in chloroplasts.; computational_description=glyoxylate reductase 2 (GLYR2)%3B FUNCTIONS IN: phosphogluconate dehydrogenase (decarboxylating) activity%2C glyoxylate reductase (NADP) activity%3B INVOLVED IN: oxidation reduction%2C pentose-phosphate shunt%2C metabolic process%3B LOCATED IN: chloroplast stroma%2C chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: 6-phosphogluconate dehydrogenase%2C NAD-binding (InterPro:IPR006115)%2C Dehydrogenase%2C multihelical (InterPro:IPR013328)%2C 6-phosphogluconate dehydrogenase%2C C-terminal-like (InterPro:IPR008927)%2C 3-hydroxyacid dehydrogenase/reductase (InterPro:IPR015815)%2C NAD(P)-binding domain (InterPro:IPR016040)%3B BEST Arabidopsis thaliana protein match is: glyoxylate reductase 1 (TAIR:AT3G25530.1)%3B Has 16115 Blast hits to 16085 proteins in 2099 species: Archae - 147%3B Bacteria - 9815%3B Metazoa - 317%3B Fungi - 434%3B Plants - 311%3B Viruses - 1%3B Other Eukaryotes - 5090 (source: NCBI BLink).; Dbxref=PMID:15937229, PMID:17580301, PMID:18495640, PMID:18650403, PMID:19740079, PMID:22309191, PMID:24076009, locus:2007923; locus_type=protein_coding
AT1G17665.1	chr1:006072432	0.0	C/6072432-6072468,6072635-6072762,6073003-6073101,6073181-6073268,6073470-6073522,6073873-6074484	AT1G17665.1 CDS AT1G17665 ID=AT1G17665.1; Parent=AT1G17665; Name=AT1G17665.1; Note=CA-responsive protein; conf_class=2; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 15 plant structures%3B EXPRESSED DURING: 11 growth stages%3B Has 149 Blast hits to 146 proteins in 39 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 21%3B Fungi - 5%3B Plants - 30%3B Viruses - 0%3B Other Eukaryotes - 89 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15047901, locus:505006127; locus_type=protein_coding
AT1TE19630	chr1:006074557	0.0	W/6074557-6074607	AT1TE19630 transposable_element AT1TE19630 ID=AT1TE19630; Name=AT1TE19630; Alias=ATREP3
AT1TE19635	chr1:006074608	0.0	W/6074608-6075608	AT1TE19635 transposable_element AT1TE19635 ID=AT1TE19635; Name=AT1TE19635; Alias=ATREP13
AT1TE19640	chr1:006075609	0.0	W/6075609-6075714	AT1TE19640 transposable_element AT1TE19640 ID=AT1TE19640; Name=AT1TE19640; Alias=META1
AT1G17660.1	chr1:006075820	0.0	W/6075820-6075891	AT1G17660.1 tRNA AT1G17660 ID=AT1G17660.1; Parent=AT1G17660; Note=tRNA-Asp; computational_description=tRNA-Asp (anticodon: GTC); Dbxref=PMID:8980477, PMID:23066098, PMID:8980477, locus:3686093; Name=AT1G17660.1; locus_type=pre_trna
AT1G17670.1	chr1:006075945	0.0	C/6075945-6076018	AT1G17670.1 tRNA AT1G17670 ID=AT1G17670.1; Parent=AT1G17670; Note=tRNA-Val; computational_description=tRNA-Val (anticodon: AAC); Dbxref=PMID:8980477, PMID:23066098, PMID:8980477, locus:3686087; Name=AT1G17670.1; locus_type=pre_trna
AT1G17680.1	chr1:006076388	0.0	W/6076388-6076701,6076920-6077007,6077140-6077247,6077487-6077671,6078021-6078216,6078344-6078601,6079037-6079256,6079537-6079650,6079973-6080118,6080363-6080448,6080542-6080659,6080889-6080933,6081082-6081208,6081296-6081410,6081497-6081687,6081781-6082160	AT1G17680.1 CDS AT1G17680 ID=AT1G17680.1; Parent=AT1G17680; Name=AT1G17680.1; Note=tetratricopeptide repeat (TPR)-containing protein; conf_class=1; computational_description=tetratricopeptide repeat (TPR)-containing protein%3B FUNCTIONS IN: binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990)%2C Tetratricopeptide repeat-containing (InterPro:IPR013026)%2C Tetratricopeptide repeat (InterPro:IPR019734)%3B Has 5585 Blast hits to 3297 proteins in 567 species: Archae - 80%3B Bacteria - 1266%3B Metazoa - 1500%3B Fungi - 759%3B Plants - 424%3B Viruses - 52%3B Other Eukaryotes - 1504 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:18315867, PMID:18650403, PMID:22589469, locus:2007928; locus_type=protein_coding
AT1G17680.2	chr1:006076388	0.0	W/6076388-6076701,6076920-6077007,6077140-6077247,6077487-6077671,6078021-6078216,6078344-6078601,6079037-6079256,6079537-6079650,6079973-6080118,6080363-6080448,6080542-6080659,6080889-6080933,6081082-6081208,6081296-6081410,6081497-6081687,6081781-6082160	AT1G17680.2 CDS AT1G17680 ID=AT1G17680.2; Parent=AT1G17680; Name=AT1G17680.2; Note=tetratricopeptide repeat (TPR)-containing protein; conf_class=2; computational_description=tetratricopeptide repeat (TPR)-containing protein%3B FUNCTIONS IN: binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990)%2C Tetratricopeptide repeat-containing (InterPro:IPR013026)%2C Tetratricopeptide repeat (InterPro:IPR019734)%3B Has 5585 Blast hits to 3297 proteins in 567 species: Archae - 80%3B Bacteria - 1266%3B Metazoa - 1500%3B Fungi - 759%3B Plants - 424%3B Viruses - 52%3B Other Eukaryotes - 1504 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18315867, PMID:18650403, PMID:22589469, locus:2007928; locus_type=protein_coding
AT1G17680.3	chr1:006076388	0.0	W/6076388-6076701,6076920-6077007,6077140-6077247,6077487-6077671,6078021-6078216,6078344-6078601,6079037-6079256,6079537-6079650,6079973-6080118,6080363-6080448,6080542-6080659,6080889-6080933,6081082-6081208,6081296-6081410,6081497-6081687,6081781-6082160	AT1G17680.3 CDS AT1G17680 ID=AT1G17680.3; Parent=AT1G17680; Name=AT1G17680.3; Note=tetratricopeptide repeat (TPR)-containing protein; Dbxref=PMID:18315867, PMID:18650403, PMID:22589469, locus:2007928; computational_description=tetratricopeptide repeat (TPR)-containing protein%3B FUNCTIONS IN: binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990)%2C Tetratricopeptide repeat-containing (InterPro:IPR013026)%2C Tetratricopeptide repeat (InterPro:IPR019734)%3B Has 5585 Blast hits to 3297 proteins in 567 species: Archae - 80%3B Bacteria - 1266%3B Metazoa - 1500%3B Fungi - 759%3B Plants - 424%3B Viruses - 52%3B Other Eukaryotes - 1504 (source: NCBI BLink).; locus_type=protein_coding
AT1G17690.1	chr1:006082878	0.0	C/6082878-6082952,6083121-6083195,6083286-6083348,6083450-6083555,6083650-6083744,6083910-6083939,6084122-6084193,6084261-6084320,6084527-6084573,6084705-6084769,6084867-6084955,6085038-6085076,6085280-6085339,6085427-6085499,6085602-6085798,6086005-6086085,6086188-6086319,6086421-6086521,6086628-6086751,6086849-6086993,6087094-6087253,6087418-6087542,6087801-6087930,6088037-6088157	AT1G17690.1 CDS AT1G17690 ID=AT1G17690.1; Parent=AT1G17690; Name=AT1G17690.1; Note=U3 small nucleolar RNA-associated protein; conf_class=1; symbol=NOF1; full_name=nucleolar factor 1; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: nucleus%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Digestive organ expansion factor%2C predicted (InterPro:IPR010678)%3B Has 25006 Blast hits to 13379 proteins in 904 species: Archae - 102%3B Bacteria - 5571%3B Metazoa - 7448%3B Fungi - 3168%3B Plants - 1056%3B Viruses - 466%3B Other Eukaryotes - 7195 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14730060, PMID:20877469, locus:2007933; locus_type=protein_coding
AT1G17700.1	chr1:006089588	0.0	W/6089588-6090130	AT1G17700.1 CDS AT1G17700 ID=AT1G17700.1; Parent=AT1G17700; Name=AT1G17700.1; Note=prenylated RAB acceptor 1.F1; conf_class=1; symbol=PRA1.F1; full_name=prenylated RAB acceptor 1.F1; computational_description=prenylated RAB acceptor 1.F1 (PRA1.F1)%3B CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895)%3B BEST Arabidopsis thaliana protein match is: PRA1 (Prenylated rab acceptor) family protein (TAIR:AT1G55190.1)%3B Has 501 Blast hits to 501 proteins in 103 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 111%3B Fungi - 27%3B Plants - 322%3B Viruses - 0%3B Other Eukaryotes - 41 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:18583532, PMID:18650403, locus:2007948; locus_type=protein_coding
AT1G17710.1	chr1:006090763	0.0	C/6090763-6091131,6091309-6091510,6091583-6091704,6091829-6091975	AT1G17710.1 CDS AT1G17710 ID=AT1G17710.1; Parent=AT1G17710; Name=AT1G17710.1; Note=Pyridoxal phosphate phosphatase-related protein; curator_summary=Encodes a phosphoethanolamine/phosphocholine phosphatase. It is likely to be involved in the liberation of inorganic phosphate from intracellular sources. Expression is upregulated in the shoot of cax1/cax3 mutant.; conf_class=2; symbol=PEPC1; Alias=AtPEPC1, Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1; full_name=phosphoethanolamine/phosphocholine phosphatase 1; computational_description=Pyridoxal phosphate phosphatase-related protein%3B FUNCTIONS IN: phosphatase activity%3B INVOLVED IN: metabolic process%3B EXPRESSED IN: 9 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate phosphatase%2C PHOSPHO2 (InterPro:IPR016965)%2C HAD-superfamily hydrolase%2C subfamily IB%2C PSPase-like (InterPro:IPR006383)%2C Pyridoxal phosphate phosphatase-related (InterPro:IPR006384)%3B BEST Arabidopsis thaliana protein match is: phosphate starvation-induced gene 2 (TAIR:AT1G73010.1)%3B Has 360 Blast hits to 348 proteins in 105 species: Archae - 0%3B Bacteria - 18%3B Metazoa - 175%3B Fungi - 16%3B Plants - 106%3B Viruses - 0%3B Other Eukaryotes - 45 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15634198, PMID:15772289, PMID:16679424, PMID:16998091, PMID:17059409, PMID:17085508, PMID:17346263, PMID:18684332, PMID:18775970, PMID:21546457, PMID:22024570, locus:2007958; locus_type=protein_coding
AT1G17710.2	chr1:006090763	0.0	C/6090763-6091131,6091309-6091510,6091583-6091755	AT1G17710.2 CDS AT1G17710 ID=AT1G17710.2; Parent=AT1G17710; Name=AT1G17710.2; Note=Pyridoxal phosphate phosphatase-related protein; curator_summary=Encodes a phosphoethanolamine/phosphocholine phosphatase. It is likely to be involved in the liberation of inorganic phosphate from intracellular sources. Expression is upregulated in the shoot of cax1/cax3 mutant.; conf_class=2; symbol=PEPC1; Alias=AtPEPC1, Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1; full_name=phosphoethanolamine/phosphocholine phosphatase 1; computational_description=Pyridoxal phosphate phosphatase-related protein%3B FUNCTIONS IN: phosphatase activity%3B INVOLVED IN: metabolic process%3B EXPRESSED IN: 9 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate phosphatase%2C PHOSPHO2 (InterPro:IPR016965)%2C HAD-superfamily hydrolase%2C subfamily IB%2C PSPase-like (InterPro:IPR006383)%2C Pyridoxal phosphate phosphatase-related (InterPro:IPR006384)%3B BEST Arabidopsis thaliana protein match is: phosphate starvation-induced gene 2 (TAIR:AT1G73010.1)%3B Has 360 Blast hits to 348 proteins in 105 species: Archae - 0%3B Bacteria - 18%3B Metazoa - 175%3B Fungi - 16%3B Plants - 106%3B Viruses - 0%3B Other Eukaryotes - 45 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15634198, PMID:15772289, PMID:16679424, PMID:16998091, PMID:17059409, PMID:17085508, PMID:17346263, PMID:18684332, PMID:18775970, PMID:21546457, PMID:22024570, locus:2007958; locus_type=protein_coding
AT1G17720.1	chr1:006093949	0.0	C/6093949-6094085,6094168-6094235,6094338-6094415,6094514-6094605,6094687-6094755,6094862-6094985,6095172-6095295,6095444-6095562,6095832-6095923,6096213-6096389,6096641-6096760,6096848-6096943,6097026-6097129,6097960-6098065	AT1G17720.1 CDS AT1G17720 ID=AT1G17720.1; Parent=AT1G17720; Name=AT1G17720.1; Note=Protein phosphatase 2A%2C regulatory subunit PR55; curator_summary=type 2A protein serine/threonine phosphatase 55 kDa B; conf_class=2; symbol=ATB BETA; computational_description=ATB BETA%3B CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046)%2C Protein phosphatase 2A%2C regulatory subunit PR55 (InterPro:IPR000009)%2C Protein phosphatase 2A%2C regulatory subunit PR55%2C conserved site (InterPro:IPR018067)%2C WD40 repeat%2C conserved site (InterPro:IPR019775)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C WD40 repeat (InterPro:IPR001680)%2C WD40 repeat%2C subgroup (InterPro:IPR019781)%3B BEST Arabidopsis thaliana protein match is: protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform (TAIR:AT1G51690.1)%3B Has 1080 Blast hits to 1028 proteins in 280 species: Archae - 0%3B Bacteria - 91%3B Metazoa - 514%3B Fungi - 212%3B Plants - 124%3B Viruses - 0%3B Other Eukaryotes - 139 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:8756607, PMID:18359847, locus:2007963; locus_type=protein_coding
AT1G17720.2	chr1:006093949	0.0	C/6093949-6094085,6094168-6094235,6094338-6094415,6094514-6094605,6094687-6094755,6094862-6094985,6095172-6095295,6095444-6095562,6095832-6095923,6096216-6096389,6096641-6096760,6096848-6096943,6097026-6097129,6097960-6098065	AT1G17720.2 CDS AT1G17720 ID=AT1G17720.2; Parent=AT1G17720; Name=AT1G17720.2; Note=Protein phosphatase 2A%2C regulatory subunit PR55; curator_summary=type 2A protein serine/threonine phosphatase 55 kDa B; conf_class=2; symbol=ATB BETA; computational_description=ATB BETA%3B CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046)%2C Protein phosphatase 2A%2C regulatory subunit PR55 (InterPro:IPR000009)%2C Protein phosphatase 2A%2C regulatory subunit PR55%2C conserved site (InterPro:IPR018067)%2C WD40 repeat%2C conserved site (InterPro:IPR019775)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C WD40 repeat (InterPro:IPR001680)%2C WD40 repeat%2C subgroup (InterPro:IPR019781)%3B BEST Arabidopsis thaliana protein match is: protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform (TAIR:AT1G51690.1)%3B Has 1080 Blast hits to 1028 proteins in 280 species: Archae - 0%3B Bacteria - 91%3B Metazoa - 514%3B Fungi - 212%3B Plants - 124%3B Viruses - 0%3B Other Eukaryotes - 139 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:8756607, PMID:18359847, locus:2007963; locus_type=protein_coding
AT1G17730.1	chr1:006099210	0.0	W/6099210-6099534,6099867-6100153	AT1G17730.1 CDS AT1G17730 ID=AT1G17730.1; Parent=AT1G17730; Name=AT1G17730.1; Note=vacuolar protein sorting 46.1; curator_summary=Encodes an ESCRT-related protein: CHMP1A/AT1G73030%3B CHMP1B/AT1G17730. CHMP1A and B mediate multivesicular body sorting of auxin carriers and are required for plant development. ESCRT: Endosomal Sorting Complexes Required For Transport machinery%3B CHMP: Charged Multivesicular Body Protein/Chromatin Modifying Protein.; conf_class=2; symbol=VPS46.1; Alias=CHMP1B, CHARGED MULTIVESICULAR BODY PROTEIN/CHROMATIN MODIFYING PROTEIN1B; full_name=vacuolar protein sorting 46.1; computational_description=vacuolar protein sorting 46.1 (VPS46.1)%3B CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024)%3B BEST Arabidopsis thaliana protein match is: SNF7 family protein (TAIR:AT1G73030.1)%3B Has 1319 Blast hits to 1319 proteins in 225 species: Archae - 2%3B Bacteria - 0%3B Metazoa - 503%3B Fungi - 283%3B Plants - 343%3B Viruses - 0%3B Other Eukaryotes - 188 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16488176, PMID:16911220, PMID:18791195, PMID:18775970, PMID:19304934, PMID:20663085, PMID:22010978, PMID:25649438, locus:2007883; locus_type=protein_coding
AT1G17745.1	chr1:006101157	0.0	W/6101157-6101775,6103633-6104120,6104212-6104979	AT1G17745.1 CDS AT1G17745 ID=AT1G17745.1; Parent=AT1G17745; Name=AT1G17745.1; Note=D-3-phosphoglycerate dehydrogenase; curator_summary=encodes a 3-Phosphoglycerate dehydrogenase; conf_class=2; symbol=PGDH; Alias=PGDH2, phosphoglycerate dehydrogenase 2; full_name=3-phosphoglycerate dehydrogenase; computational_description=3-phosphoglycerate dehydrogenase (PGDH)%3B FUNCTIONS IN: phosphoglycerate dehydrogenase activity%2C protein binding%3B INVOLVED IN: L-serine biosynthetic process%3B LOCATED IN: cytosol%2C nucleus%2C chloroplast%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: D-3-phosphoglycerate dehydrogenase (InterPro:IPR006236)%2C D-isomer specific 2-hydroxyacid dehydrogenase%2C catalytic domain (InterPro:IPR006139)%2C D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD-binding (InterPro:IPR006140)%2C D-3-phosphogylcerate Dehydrogenase (InterPro:IPR015508)%2C Amino acid-binding ACT (InterPro:IPR002912)%2C NAD(P)-binding domain (InterPro:IPR016040)%3B BEST Arabidopsis thaliana protein match is: D-3-phosphoglycerate dehydrogenase (TAIR:AT4G34200.1)%3B Has 30450 Blast hits to 30444 proteins in 2726 species: Archae - 473%3B Bacteria - 18179%3B Metazoa - 739%3B Fungi - 1175%3B Plants - 595%3B Viruses - 5%3B Other Eukaryotes - 9284 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9867856, PMID:11354602, PMID:15215506, PMID:16367961, PMID:16830180, PMID:17496105, PMID:18433157, PMID:18650403, PMID:18753283, PMID:20118269, PMID:20736450, PMID:24058165, PMID:24368794, PMID:24304635, locus:505006128; locus_type=protein_coding
AT1G17745.2	chr1:006101157	0.0	W/6101157-6101779,6103331-6103418,6103644-6104120,6104212-6104979	AT1G17745.2 CDS AT1G17745 ID=AT1G17745.2; Parent=AT1G17745; Name=AT1G17745.2; Note=D-3-phosphoglycerate dehydrogenase; curator_summary=encodes a 3-Phosphoglycerate dehydrogenase; conf_class=6; symbol=PGDH; Alias=PGDH2, phosphoglycerate dehydrogenase 2; full_name=3-phosphoglycerate dehydrogenase; computational_description=3-phosphoglycerate dehydrogenase (PGDH)%3B FUNCTIONS IN: phosphoglycerate dehydrogenase activity%2C protein binding%3B INVOLVED IN: L-serine biosynthetic process%3B LOCATED IN: cytosol%2C nucleus%2C chloroplast%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: D-3-phosphoglycerate dehydrogenase (InterPro:IPR006236)%2C D-isomer specific 2-hydroxyacid dehydrogenase%2C catalytic domain (InterPro:IPR006139)%2C D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD-binding (InterPro:IPR006140)%2C D-3-phosphogylcerate Dehydrogenase (InterPro:IPR015508)%2C Amino acid-binding ACT (InterPro:IPR002912)%2C NAD(P)-binding domain (InterPro:IPR016040)%3B BEST Arabidopsis thaliana protein match is: D-3-phosphoglycerate dehydrogenase (TAIR:AT4G34200.1)%3B Has 30450 Blast hits to 30444 proteins in 2726 species: Archae - 473%3B Bacteria - 18179%3B Metazoa - 739%3B Fungi - 1175%3B Plants - 595%3B Viruses - 5%3B Other Eukaryotes - 9284 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:9867856, PMID:11354602, PMID:15215506, PMID:16367961, PMID:16830180, PMID:17496105, PMID:18433157, PMID:18650403, PMID:18753283, PMID:20118269, PMID:20736450, PMID:24058165, PMID:24368794, PMID:24304635, locus:505006128; locus_type=protein_coding
AT1G17744.1	chr1:006101355	0.0	C/6101355-6101795	AT1G17744.1 CDS AT1G17744 ID=AT1G17744.1; Parent=AT1G17744; Name=AT1G17744.1; Note=hypothetical protein; conf_class=1; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: stem%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:4515102543; locus_type=protein_coding
AT1TE19730	chr1:006102454	0.0	W/6102454-6103091	AT1TE19730 transposable_element AT1TE19730 ID=AT1TE19730; Name=AT1TE19730; Alias=ATREP5
AT1G05317.1	chr1:006103076	0.0	C/6103076-6103654	AT1G05317.1 antisense_lncRNA AT1G05317 ID=AT1G05317.1; Parent=AT1G05317; Name=AT1G05317.1; description=Natural antisense transcript overlaps with AT1G17745; Note=Natural antisense transcript overlaps with AT1G17745; locus_type=antisense_long_noncoding_rna
AT1G05323.1	chr1:006106370	0.0	C/6106370-6106594	AT1G05323.1 lnc_RNA AT1G05323 ID=AT1G05323.1; Parent=AT1G05323; Name=AT1G05323.1; locus_type=long_noncoding_rna
AT1G05327.1	chr1:006106381	0.0	C/6106381-6107119	AT1G05327.1 antisense_lncRNA AT1G05327 ID=AT1G05327.1; Parent=AT1G05327; Name=AT1G05327.1; description=Natural antisense transcript overlaps with AT1G17750; Note=Natural antisense transcript overlaps with AT1G17750; locus_type=antisense_long_noncoding_rna
AT1G17750.1	chr1:006106656	0.0	W/6106656-6109551,6109638-6110008	AT1G17750.1 CDS AT1G17750 ID=AT1G17750.1; Parent=AT1G17750; Name=AT1G17750.1; Note=PEP1 receptor 2; curator_summary=Encodes PEPR2%2C a plasma membrane leucine-rich repeat receptor kinase functioning as a receptor for the Pep1 and Pep2 peptides. Pep1 and Pep2 are amino acids that induce the transcription of defense-related genes.; conf_class=2; symbol=PEPR2; Alias=AtPEPR2, PEP1 RECEPTOR 2; full_name=PEP1 receptor 2; computational_description=PEP1 receptor 2 (PEPR2)%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C peptide binding%2C kinase activity%2C ATP binding%3B INVOLVED IN: response to jasmonic acid stimulus%2C protein amino acid phosphorylation%2C transmembrane receptor protein tyrosine kinase signaling pathway%2C defense response to bacterium%2C response to wounding%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Leucine-rich repeat-containing N-terminal domain%2C type 2 (InterPro:IPR013210)%2C Leucine-rich repeat (InterPro:IPR001611)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: PEP1 receptor 1 (TAIR:AT1G73080.1)%3B Has 253253 Blast hits to 143216 proteins in 4736 species: Archae - 167%3B Bacteria - 25668%3B Metazoa - 79287%3B Fungi - 11782%3B Plants - 106533%3B Viruses - 446%3B Other Eukaryotes - 29370 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17194768, PMID:20018402, PMID:20179141, PMID:20200150, PMID:21205619, PMID:23150556, PMID:23431187, PMID:23431184, PMID:23496690, PMID:24450616, PMID:24357608, PMID:24151300, PMID:25475059, PMID:25667591, locus:2007918; locus_type=protein_coding
AT1G17760.1	chr1:006110208	0.0	C/6110208-6110380,6110555-6110746,6110846-6111010,6111099-6111176,6111264-6111330,6111426-6111578,6111969-6112028,6112421-6112517,6112697-6112761,6113168-6113308,6113451-6113513,6113600-6113658,6113856-6113976,6114079-6114142,6114514-6114560,6114791-6114919,6115035-6115175,6115253-6115314,6115616-6115716,6115856-6115965,6116051-6116113,6116218-6116271	AT1G17760.1 CDS AT1G17760 ID=AT1G17760.1; Parent=AT1G17760; Name=AT1G17760.1; Note=Tetratricopeptide repeat (TPR)-like superfamily protein; curator_summary=Encodes a homolog of the mammalian protein CstF77%2C a polyadenylation factor subunit. RNA 3%26#8242%3B-end%E2%80%93processing factor of antisense FLC transcript. Mediates silencing of the floral repressor gene FLC.; conf_class=1; symbol=CSTF77; computational_description=CSTF77%3B FUNCTIONS IN: protein binding%2C mRNA binding%2C transcription repressor activity%3B INVOLVED IN: RNA 3'-end processing%2C mRNA processing%2C embryo sac development%3B LOCATED IN: intracellular%2C nucleus%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA-processing protein%2C HAT helix (InterPro:IPR003107)%2C Tetratricopeptide-like helical (InterPro:IPR011990)%2C Tetratricopeptide repeat-containing (InterPro:IPR013026)%2C Tetratricopeptide repeat (InterPro:IPR019734)%2C Suppressor of forked (InterPro:IPR008847)%3B BEST Arabidopsis thaliana protein match is: crooked neck protein%2C putative / cell cycle protein%2C putative (TAIR:AT5G45990.1)%3B Has 2092 Blast hits to 1537 proteins in 234 species: Archae - 0%3B Bacteria - 14%3B Metazoa - 771%3B Fungi - 713%3B Plants - 343%3B Viruses - 0%3B Other Eukaryotes - 251 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12379796, PMID:16282318, PMID:18479511, PMID:18221017, PMID:19965720, PMID:20214900, PMID:22589469, locus:2007973; locus_type=protein_coding
AT1TE19780	chr1:006118059	0.0	C/6118059-6118280	AT1TE19780 transposable_element AT1TE19780 ID=AT1TE19780; Name=AT1TE19780; Alias=HELITRONY2
AT1TE19785	chr1:006119632	0.0	C/6119632-6120135	AT1TE19785 transposable_element AT1TE19785 ID=AT1TE19785; Name=AT1TE19785; Alias=ATREP4
AT1G17770.1	chr1:006120741	0.0	W/6120741-6122822	AT1G17770.1 CDS AT1G17770 ID=AT1G17770.1; Parent=AT1G17770; Name=AT1G17770.1; Note=histone-lysine N-methyltransferase%2C H3 lysine-9 specific SUVH3-like protein; curator_summary=Encodes a SU(VAR)3-9 homolog%2C a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression and act as histone methyltransferases. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. A paternally expressed imprinted gene.; conf_class=1; symbol=SUVH7; Alias=SDG17, SET DOMAIN PROTEIN 17; full_name=SU(VAR)3-9 homolog 7; computational_description=SU(VAR)3-9 homolog 7 (SUVH7)%3B FUNCTIONS IN: zinc ion binding%2C histone-lysine N-methyltransferase activity%3B INVOLVED IN: chromatin modification%3B LOCATED IN: nucleus%3B CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214)%2C SRA-YDG (InterPro:IPR003105)%2C Pre-SET zinc-binding sub-group (InterPro:IPR003606)%2C Post-SET domain (InterPro:IPR003616)%2C Pre-SET domain (InterPro:IPR007728)%3B BEST Arabidopsis thaliana protein match is: SET domain group 21 (TAIR:AT2G24740.1)%3B Has 4570 Blast hits to 4388 proteins in 399 species: Archae - 0%3B Bacteria - 282%3B Metazoa - 2143%3B Fungi - 453%3B Plants - 1096%3B Viruses - 0%3B Other Eukaryotes - 596 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11691919, PMID:12805620, PMID:15258262, PMID:15659850, PMID:16489130, PMID:16582009, PMID:20736450, PMID:21257907, PMID:23313553, locus:2030953; locus_type=protein_coding
AT1TE19790	chr1:006122834	0.0	C/6122834-6122862	AT1TE19790 transposable_element AT1TE19790 ID=AT1TE19790; Name=AT1TE19790; Alias=HELITRONY3
AT1TE19795	chr1:006122863	0.0	C/6122863-6123448	AT1TE19795 transposable_element AT1TE19795 ID=AT1TE19795; Name=AT1TE19795; Alias=ATTIR16T3A
AT1TE19800	chr1:006123453	0.0	W/6123453-6123628	AT1TE19800 transposable_element AT1TE19800 ID=AT1TE19800; Name=AT1TE19800; Alias=ATREP10B
AT1G17780.2	chr1:006124095	0.0	W/6124095-6124157,6124254-6124629,6124722-6124876,6124969-6125166	AT1G17780.2 CDS AT1G17780 ID=AT1G17780.2; Parent=AT1G17780; Name=AT1G17780.2; Note=transmembrane protein; conf_class=2; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G16575.1)%3B Has 13 Blast hits to 13 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 13%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2030978; locus_type=protein_coding
AT1G17780.3	chr1:006124095	0.0	W/6124095-6124157,6124254-6124629,6124722-6124876,6124969-6125166	AT1G17780.3 CDS AT1G17780 ID=AT1G17780.3; Parent=AT1G17780; Name=AT1G17780.3; Note=transmembrane protein; Dbxref=locus:2030978; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G16575.1)%3B Has 13 Blast hits to 13 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 13%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; locus_type=protein_coding
AT1G17780.6	chr1:006124095	0.0	W/6124095-6124157,6124254-6124629,6124722-6124876,6124969-6125166	AT1G17780.6 CDS AT1G17780 ID=AT1G17780.6; Parent=AT1G17780; Name=AT1G17780.6; Note=transmembrane protein; Dbxref=locus:2030978; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G16575.1)%3B Has 13 Blast hits to 13 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 13%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; locus_type=protein_coding
AT1G17780.1	chr1:006124317	0.0	W/6124317-6124629,6124722-6124978	AT1G17780.1 CDS AT1G17780 ID=AT1G17780.1; Parent=AT1G17780; Name=AT1G17780.1; Note=transmembrane protein; conf_class=1; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G16575.1)%3B Has 13 Blast hits to 13 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 13%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:2030978; locus_type=protein_coding
AT1G17780.4	chr1:006124317	0.0	W/6124317-6124629,6124722-6124876,6124969-6125166	AT1G17780.4 CDS AT1G17780 ID=AT1G17780.4; Parent=AT1G17780; Name=AT1G17780.4; Note=transmembrane protein; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G16575.1)%3B Has 13 Blast hits to 13 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 13%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=locus:2030978; locus_type=protein_coding
AT1G17780.5	chr1:006124317	0.0	W/6124317-6124629,6124722-6124876,6124969-6125166	AT1G17780.5 CDS AT1G17780 ID=AT1G17780.5; Parent=AT1G17780; Name=AT1G17780.5; Note=transmembrane protein; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G16575.1)%3B Has 13 Blast hits to 13 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 13%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=locus:2030978; locus_type=protein_coding
AT1G17790.1	chr1:006125532	0.0	C/6125532-6125581,6125660-6125761,6125878-6125923,6126011-6127276	AT1G17790.1 CDS AT1G17790 ID=AT1G17790.1; Parent=AT1G17790; Name=AT1G17790.1; Note=DNA-binding bromodomain-containing protein; conf_class=2; computational_description=DNA-binding bromodomain-containing protein%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 18 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: Bromodomain (InterPro:IPR001487)%3B BEST Arabidopsis thaliana protein match is: global transcription factor group E3 (TAIR:AT1G73150.1)%3B Has 10948 Blast hits to 7134 proteins in 556 species: Archae - 16%3B Bacteria - 1050%3B Metazoa - 4460%3B Fungi - 1290%3B Plants - 1025%3B Viruses - 165%3B Other Eukaryotes - 2942 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12466527, PMID:14576160, PMID:18502747, PMID:18775970, locus:2030958; locus_type=protein_coding
AT1TE19810	chr1:006127655	0.0	C/6127655-6127679	AT1TE19810 transposable_element AT1TE19810 ID=AT1TE19810; Name=AT1TE19810; Alias=ATLINE1_3A
AT1TE19815	chr1:006127680	0.0	C/6127680-6128262	AT1TE19815 transposable_element AT1TE19815 ID=AT1TE19815; Name=AT1TE19815; Alias=ATLINEIII
AT1TE19820	chr1:006128263	0.0	C/6128263-6128348	AT1TE19820 transposable_element AT1TE19820 ID=AT1TE19820; Name=AT1TE19820; Alias=ATLINE2
AT1G17800.1	chr1:006128828	0.0	W/6128828-6129038,6129180-6129391	AT1G17800.1 CDS AT1G17800 ID=AT1G17800.1; Parent=AT1G17800; Name=AT1G17800.1; Note=early nodulin-like protein 22; conf_class=1; symbol=ENODL22; Alias=AtENODL22; full_name=early nodulin-like protein 22; computational_description=early nodulin-like protein 22 (ENODL22)%3B FUNCTIONS IN: electron carrier activity%2C copper ion binding%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 7 plant structures%3B EXPRESSED DURING: 4 anthesis%2C LP.02 two leaves visible%2C 4 leaf senescence stage%2C LP.12 twelve leaves visible%3B CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245)%2C Cupredoxin (InterPro:IPR008972)%3B BEST Arabidopsis thaliana protein match is: plantacyanin (TAIR:AT2G02850.1)%3B Has 1120 Blast hits to 1103 proteins in 53 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1120%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15642518, PMID:18775970, PMID:19897921, locus:2030888; locus_type=protein_coding
AT1G17810.1	chr1:006130209	0.0	W/6130209-6130350,6130651-6130916,6131047-6131442	AT1G17810.1 CDS AT1G17810 ID=AT1G17810.1; Parent=AT1G17810; Name=AT1G17810.1; Note=beta-tonoplast intrinsic protein; curator_summary=beta-tonoplast intrinsic protein (beta-TIP) mRNA%2C complete; conf_class=2; symbol=BETA-TIP; full_name=beta-tonoplast intrinsic protein; computational_description=beta-tonoplast intrinsic protein (BETA-TIP)%3B FUNCTIONS IN: water channel activity%3B INVOLVED IN: transport%2C transmembrane transport%3B LOCATED IN: integral to membrane%2C membrane%3B EXPRESSED DURING: seedling growth%3B CONTAINS InterPro DOMAIN/s: Major intrinsic protein%2C conserved site (InterPro:IPR022357)%2C Aquaporin (InterPro:IPR012269)%2C Major intrinsic protein (InterPro:IPR000425)%3B BEST Arabidopsis thaliana protein match is: Aquaporin-like superfamily protein (TAIR:AT1G73190.1)%3B Has 10707 Blast hits to 10694 proteins in 2147 species: Archae - 83%3B Bacteria - 5023%3B Metazoa - 1508%3B Fungi - 447%3B Plants - 2508%3B Viruses - 2%3B Other Eukaryotes - 1136 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11500536, PMID:15272001, PMID:15246063, PMID:18539592, PMID:20736450, locus:2030968; locus_type=protein_coding
AT1G05333.1	chr1:006131064	0.0	C/6131064-6131525	AT1G05333.1 antisense_lncRNA AT1G05333 ID=AT1G05333.1; Parent=AT1G05333; Name=AT1G05333.1; description=Natural antisense transcript overlaps with AT1G17810; Note=Natural antisense transcript overlaps with AT1G17810; locus_type=antisense_long_noncoding_rna
AT1G05333.2	chr1:006131554	0.0	C/6131554-6135345	AT1G05333.2 antisense_lncRNA AT1G05333 ID=AT1G05333.2; Parent=AT1G05333; Name=AT1G05333.2; description=Natural antisense transcript overlaps with AT1G17810; Note=Natural antisense transcript overlaps with AT1G17810; locus_type=antisense_long_noncoding_rna
AT1G17820.1	chr1:006131751	0.0	C/6131751-6132425,6132515-6132709,6132882-6132976,6133122-6133488,6133591-6134221,6134308-6134549,6134909-6135115	AT1G17820.1 CDS AT1G17820 ID=AT1G17820.1; Parent=AT1G17820; Name=AT1G17820.1; Note=testis-expressed sequence 2-like protein (DUF2404); conf_class=2; computational_description=Putative integral membrane protein conserved region (DUF2404)%3B FUNCTIONS IN: phosphoinositide binding%3B INVOLVED IN: signal transduction%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2404%2C transmembrane (InterPro:IPR019411)%2C Pleckstrin homology (InterPro:IPR001849)%3B BEST Arabidopsis thaliana protein match is: Putative integral membrane protein conserved region (DUF2404) (TAIR:AT1G73200.1)%3B Has 588 Blast hits to 406 proteins in 156 species: Archae - 0%3B Bacteria - 7%3B Metazoa - 150%3B Fungi - 264%3B Plants - 48%3B Viruses - 0%3B Other Eukaryotes - 119 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15358268, locus:2030983; locus_type=protein_coding
AT1G17830.1	chr1:006136118	0.0	C/6136118-6136386,6136515-6136606,6136696-6136781,6136883-6137117,6137203-6137420,6138059-6138172	AT1G17830.1 CDS AT1G17830 ID=AT1G17830.1; Parent=AT1G17830; Name=AT1G17830.1; Note=hypothetical protein (DUF789); conf_class=2; computational_description=Protein of unknown function (DUF789)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF789 (InterPro:IPR008507)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF789) (TAIR:AT1G73210.1)%3B Has 265 Blast hits to 257 proteins in 18 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 263%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, locus:2030883; locus_type=protein_coding
AT1TE19860	chr1:006141636	0.0	W/6141636-6142279	AT1TE19860 transposable_element AT1TE19860 ID=AT1TE19860; Name=AT1TE19860; Alias=ATREP3
AT1G05337.1	chr1:006142402	0.0	C/6142402-6142830	AT1G05337.1 antisense_lncRNA AT1G05337 ID=AT1G05337.1; Parent=AT1G05337; Name=AT1G05337.1; description=Natural antisense transcript overlaps with AT1G17840; Note=Natural antisense transcript overlaps with AT1G17840; locus_type=antisense_long_noncoding_rna
AT1G17840.1	chr1:006142870	0.0	W/6142870-6143253,6143479-6143768,6143858-6144029,6144111-6144233,6144317-6144445,6144533-6144727,6144808-6144894,6144976-6145248,6145337-6145444,6145544-6145894	AT1G17840.1 CDS AT1G17840 ID=AT1G17840.1; Parent=AT1G17840; Name=AT1G17840.1; Note=white-brown complex-like protein; curator_summary=Encodes a plasma membrane-localized ATP-binding cassette transporter%2C that is required for cutin transport to the extracellular matrix.; conf_class=2; symbol=ABCG11; Alias=ATWBC11, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, AtABCG11, COF1, CUTICULAR DEFECT AND ORGAN FUSION 1, DSO, DESPERADO, WBC11, white-brown complex homolog protein 11; full_name=ATP-binding cassette G11; computational_description=white-brown complex homolog protein 11 (WBC11)%3B FUNCTIONS IN: ATPase activity%2C coupled to transmembrane movement of substances%2C fatty acid transporter activity%3B INVOLVED IN: cutin transport%2C fatty acid transport%3B LOCATED IN: plasma membrane%2C external side of plasma membrane%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C ABC transporter-like (InterPro:IPR003439)%2C ABC-2 type transporter (InterPro:IPR013525)%2C ABC transporter%2C conserved site (InterPro:IPR017871)%3B BEST Arabidopsis thaliana protein match is: ABC-2 type transporter family protein (TAIR:AT3G21090.1)%3B Has 367567 Blast hits to 338203 proteins in 4071 species: Archae - 6733%3B Bacteria - 294034%3B Metazoa - 7509%3B Fungi - 6244%3B Plants - 5251%3B Viruses - 10%3B Other Eukaryotes - 47786 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11346655, PMID:15381434, PMID:15347791, PMID:16299169, PMID:17164256, PMID:17660356, PMID:17971336, PMID:18299247, PMID:18650403, PMID:19704564, PMID:20035035, PMID:20870961, PMID:21232060, PMID:21838868, PMID:23505340, PMID:23463491, PMID:24112720, locus:2030898; locus_type=protein_coding
AT1G17850.1	chr1:006146470	0.0	C/6146470-6146623,6146782-6147084,6147179-6147282,6147446-6147537,6147775-6147937,6148053-6148196,6148314-6148367,6148494-6148820	AT1G17850.1 CDS AT1G17850 ID=AT1G17850.1; Parent=AT1G17850; Name=AT1G17850.1; Note=Rhodanese/Cell cycle control phosphatase superfamily protein; conf_class=2; computational_description=Rhodanese/Cell cycle control phosphatase superfamily protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763)%3B BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT2G40760.1)%3B Has 5670 Blast hits to 5670 proteins in 1542 species: Archae - 13%3B Bacteria - 3184%3B Metazoa - 52%3B Fungi - 3%3B Plants - 118%3B Viruses - 0%3B Other Eukaryotes - 2300 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12482606, PMID:14576160, PMID:17408957, locus:2030908; locus_type=protein_coding
AT1G17850.2	chr1:006146470	0.0	C/6146470-6146623,6146782-6147084,6147179-6147282,6147446-6147537,6147775-6147937,6148047-6148196,6148314-6148367,6148494-6148820	AT1G17850.2 CDS AT1G17850 ID=AT1G17850.2; Parent=AT1G17850; Name=AT1G17850.2; Note=Rhodanese/Cell cycle control phosphatase superfamily protein; conf_class=4; computational_description=Rhodanese/Cell cycle control phosphatase superfamily protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763)%3B BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT2G40760.1)%3B Has 5670 Blast hits to 5670 proteins in 1542 species: Archae - 13%3B Bacteria - 3184%3B Metazoa - 52%3B Fungi - 3%3B Plants - 118%3B Viruses - 0%3B Other Eukaryotes - 2300 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:12482606, PMID:14576160, PMID:17408957, locus:2030908; locus_type=protein_coding
AT1G05343.1	chr1:006146600	0.0	W/6146600-6146804	AT1G05343.1 antisense_lncRNA AT1G05343 ID=AT1G05343.1; Parent=AT1G05343; Name=AT1G05343.1; description=Natural antisense transcript overlaps with AT1G17850; Note=Natural antisense transcript overlaps with AT1G17850; locus_type=antisense_long_noncoding_rna
AT1G05347.1	chr1:006149305	0.0	C/6149305-6150189	AT1G05347.1 antisense_lncRNA AT1G05347 ID=AT1G05347.1; Parent=AT1G05347; Name=AT1G05347.1; description=Natural antisense transcript overlaps with AT1G17860; Note=Natural antisense transcript overlaps with AT1G17860; locus_type=antisense_long_noncoding_rna
AT1G17860.1	chr1:006149343	0.0	W/6149343-6149933	AT1G17860.1 CDS AT1G17860 ID=AT1G17860.1; Parent=AT1G17860; Name=AT1G17860.1; Note=Kunitz family trypsin and protease inhibitor protein; conf_class=1; computational_description=Kunitz family trypsin and protease inhibitor protein%3B FUNCTIONS IN: endopeptidase inhibitor activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: apoplast%2C cell wall%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Proteinase inhibitor I3%2C Kunitz legume (InterPro:IPR002160)%2C Kunitz inhibitor ST1-like (InterPro:IPR011065)%3B BEST Arabidopsis thaliana protein match is: kunitz trypsin inhibitor 1 (TAIR:AT1G73260.1)%3B Has 1019 Blast hits to 1019 proteins in 106 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1018%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15763661, PMID:15593128, PMID:16258017, PMID:18166134, PMID:18650403, PMID:18796151, PMID:20484005, locus:2030923; locus_type=protein_coding
AT1G17870.1	chr1:006150036	0.0	C/6150036-6150394,6150470-6150624,6150708-6150946,6151030-6151254,6151349-6151546,6151640-6152185	AT1G17870.1 CDS AT1G17870 ID=AT1G17870.1; Parent=AT1G17870; Name=AT1G17870.1; Note=ethylene-dependent gravitropism-deficient and yellow-green-like 3; curator_summary=S2P-like putative metalloprotease%2C also contain transmembrane helices near their C-termini and many of them%2C five of seven%2C contain a conserved zinc-binding motif HEXXH. Homolog of EGY1. Each of the EGY1 and EGY-like proteins share two additional highly conserved motifs%2C the previously reported NPDG motif (aa 442%E2%80%93454 in EGY1%2C Rudner et al.%2C 1999) and a newly defined GNLR motif (aa 171%E2%80%93179 in EGY1). The GNLR motif is a novel signature motif unique to EGY1 and EGY-like proteins as well as other EGY1 orthologs found in cyanobacteria.; conf_class=1; symbol=EGY3; Alias=ATEGY3, ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN-LIKE 3; full_name=ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN-LIKE 3; computational_description=ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN-LIKE 3 (EGY3)%3B INVOLVED IN: response to high light intensity%2C response to hydrogen peroxide%2C response to heat%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 9 growth stages%3B BEST Arabidopsis thaliana protein match is: Peptidase M50 family protein (TAIR:AT5G35220.1)%3B Has 660 Blast hits to 652 proteins in 203 species: Archae - 107%3B Bacteria - 240%3B Metazoa - 53%3B Fungi - 13%3B Plants - 117%3B Viruses - 1%3B Other Eukaryotes - 129 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14576160, PMID:15659096, PMID:17059409, PMID:18441212, PMID:18603616, locus:2030938; locus_type=protein_coding
AT1G05353.1	chr1:006151974	0.0	W/6151974-6152170	AT1G05353.1 antisense_RNA AT1G05353 ID=AT1G05353.1; Parent=AT1G05353; Name=AT1G05353.1; description=Natural antisense transcript overlaps with AT1G17870; Note=Natural antisense transcript overlaps with AT1G17870; locus_type=antisense_rna
AT1G17880.1	chr1:006152572	0.0	C/6152572-6152756,6152842-6152880,6152974-6153030,6153120-6153268,6153358-6153425	AT1G17880.1 CDS AT1G17880 ID=AT1G17880.1; Parent=AT1G17880; Name=AT1G17880.1; Note=basic transcription factor 3; conf_class=2; symbol=BTF3; Alias=ATBTF3; full_name=basic transcription factor 3; computational_description=basic transcription factor 3 (BTF3)%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: response to salt stress%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Nascent polypeptide-associated complex NAC (InterPro:IPR002715)%3B BEST Arabidopsis thaliana protein match is: Nascent polypeptide-associated complex NAC (TAIR:AT1G73230.1)%3B Has 841 Blast hits to 841 proteins in 250 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 427%3B Fungi - 178%3B Plants - 145%3B Viruses - 0%3B Other Eukaryotes - 91 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15829605, PMID:18650403, PMID:18775970, PMID:15716105, PMID:20736450, locus:2030963; locus_type=protein_coding
AT1G17890.1	chr1:006154478	0.0	C/6154478-6155442,6155575-6155596	AT1G17890.1 CDS AT1G17890 ID=AT1G17890.1; Parent=AT1G17890; Name=AT1G17890.1; Note=NAD(P)-binding Rossmann-fold superfamily protein; conf_class=1; symbol=GER2; computational_description=GER2%3B FUNCTIONS IN: coenzyme binding%2C binding%2C catalytic activity%3B INVOLVED IN: GDP-L-fucose biosynthetic process%2C cellular metabolic process%2C metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509)%2C NAD(P)-binding domain (InterPro:IPR016040)%3B BEST Arabidopsis thaliana protein match is: GDP-4-keto-6-deoxymannose-3%2C5-epimerase-4-reductase 1 (TAIR:AT1G73250.1)%3B Has 26865 Blast hits to 26861 proteins in 2796 species: Archae - 647%3B Bacteria - 15991%3B Metazoa - 493%3B Fungi - 205%3B Plants - 723%3B Viruses - 26%3B Other Eukaryotes - 8780 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16650000, locus:2030973; locus_type=protein_coding
AT1G17890.2	chr1:006154478	0.0	C/6154478-6155440	AT1G17890.2 CDS AT1G17890 ID=AT1G17890.2; Parent=AT1G17890; Name=AT1G17890.2; Note=NAD(P)-binding Rossmann-fold superfamily protein; conf_class=1; symbol=GER2; computational_description=GER2%3B FUNCTIONS IN: coenzyme binding%2C binding%2C catalytic activity%3B INVOLVED IN: GDP-L-fucose biosynthetic process%2C cellular metabolic process%2C metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509)%2C NAD(P)-binding domain (InterPro:IPR016040)%3B BEST Arabidopsis thaliana protein match is: GDP-4-keto-6-deoxymannose-3%2C5-epimerase-4-reductase 1 (TAIR:AT1G73250.1)%3B Has 26865 Blast hits to 26861 proteins in 2796 species: Archae - 647%3B Bacteria - 15991%3B Metazoa - 493%3B Fungi - 205%3B Plants - 723%3B Viruses - 26%3B Other Eukaryotes - 8780 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16650000, locus:2030973; locus_type=protein_coding
AT1G17890.3	chr1:006154478	0.0	C/6154478-6155440	AT1G17890.3 CDS AT1G17890 ID=AT1G17890.3; Parent=AT1G17890; Name=AT1G17890.3; Note=NAD(P)-binding Rossmann-fold superfamily protein; conf_class=1; symbol=GER2; computational_description=GER2%3B FUNCTIONS IN: coenzyme binding%2C binding%2C catalytic activity%3B INVOLVED IN: GDP-L-fucose biosynthetic process%2C cellular metabolic process%2C metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509)%2C NAD(P)-binding domain (InterPro:IPR016040)%3B BEST Arabidopsis thaliana protein match is: GDP-4-keto-6-deoxymannose-3%2C5-epimerase-4-reductase 1 (TAIR:AT1G73250.1)%3B Has 26865 Blast hits to 26861 proteins in 2796 species: Archae - 647%3B Bacteria - 15991%3B Metazoa - 493%3B Fungi - 205%3B Plants - 723%3B Viruses - 26%3B Other Eukaryotes - 8780 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16650000, locus:2030973; locus_type=protein_coding
AT1TE19910	chr1:006156401	0.0	C/6156401-6157267,6157236-6158864	AT1TE19910 transposable_element AT1TE19910 ID=AT1TE19910; Name=AT1TE19910; Alias=VANDAL2N1
AT1G17900.1	chr1:006157368	0.0	C/6157368-6158130	AT1G17900.1 CDS AT1G17900 ID=AT1G17900.1; Parent=AT1G17900; Name=AT1G17900.1; index=1; computational_description=similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G27590.1)%3B similar to hypothetical protein PF10_0266 [Plasmodium falciparum 3D7] (GB:NP_700739.1); Dbxref=locus:2030928; Note=transposable_element_gene; locus_type=transposable_element_gene
AT1G17910.1	chr1:006159126	0.0	W/6159126-6160146,6160242-6160367,6160468-6161615	AT1G17910.1 CDS AT1G17910 ID=AT1G17910.1; Parent=AT1G17910; Name=AT1G17910.1; Note=Wall-associated kinase family protein; conf_class=3; computational_description=Wall-associated kinase family protein%3B FUNCTIONS IN: kinase activity%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: endomembrane system%2C integral to membrane%3B EXPRESSED IN: sperm cell%3B CONTAINS InterPro DOMAIN/s: Wall-associated kinase (InterPro:IPR013695)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: Wall-associated kinase family protein (TAIR:AT1G19390.1)%3B Has 115640 Blast hits to 113901 proteins in 3774 species: Archae - 105%3B Bacteria - 13025%3B Metazoa - 42944%3B Fungi - 9529%3B Plants - 32969%3B Viruses - 430%3B Other Eukaryotes - 16638 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18667720, PMID:20736450, locus:2030988; locus_type=protein_coding
AT1G17920.1	chr1:006162214	0.0	C/6162214-6162564,6162648-6162737,6162831-6163093,6163171-6163351,6163431-6163631,6163715-6163816,6163900-6164355,6164445-6164633,6164722-6164839,6164921-6165033	AT1G17920.1 CDS AT1G17920 ID=AT1G17920.1; Parent=AT1G17920; Name=AT1G17920.1; Note=homeodomain GLABROUS 12; curator_summary=Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Together with HDG11%2C it is involved in trichome branching.; conf_class=2; symbol=HDG12; full_name=homeodomain GLABROUS 12; computational_description=homeodomain GLABROUS 12 (HDG12)%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: trichome branching%2C regulation of transcription%2C DNA-dependent%3B LOCATED IN: nucleus%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Homeobox%2C conserved site (InterPro:IPR017970)%2C Homeobox (InterPro:IPR001356)%2C Homeodomain-like (InterPro:IPR009057)%2C Lipid-binding START (InterPro:IPR002913)%2C Homeodomain-related (InterPro:IPR012287)%3B BEST Arabidopsis thaliana protein match is: homeodomain GLABROUS 11 (TAIR:AT1G73360.1)%3B Has 11255 Blast hits to 11173 proteins in 538 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 8589%3B Fungi - 214%3B Plants - 2276%3B Viruses - 3%3B Other Eukaryotes - 173 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:15186492, PMID:16778018, PMID:18451323, PMID:19626137, PMID:20736450, PMID:23590515, locus:2030913; locus_type=protein_coding
AT1G17920.2	chr1:006162214	0.0	C/6162214-6162564,6162648-6162737,6162831-6163093,6163171-6163351,6163431-6163631,6163715-6163816,6163900-6164355,6164445-6164633,6164722-6164839,6164921-6165033	AT1G17920.2 CDS AT1G17920 ID=AT1G17920.2; Parent=AT1G17920; Name=AT1G17920.2; Note=homeodomain GLABROUS 12; symbol=HDG12; full_name=homeodomain GLABROUS 12; Dbxref=PMID:11118137, PMID:15186492, PMID:16778018, PMID:18451323, PMID:19626137, PMID:20736450, PMID:23590515, locus:2030913; curator_summary=Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Together with HDG11%2C it is involved in trichome branching.; computational_description=homeodomain GLABROUS 12 (HDG12)%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: trichome branching%2C regulation of transcription%2C DNA-dependent%3B LOCATED IN: nucleus%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Homeobox%2C conserved site (InterPro:IPR017970)%2C Homeobox (InterPro:IPR001356)%2C Homeodomain-like (InterPro:IPR009057)%2C Lipid-binding START (InterPro:IPR002913)%2C Homeodomain-related (InterPro:IPR012287)%3B BEST Arabidopsis thaliana protein match is: homeodomain GLABROUS 11 (TAIR:AT1G73360.1)%3B Has 11255 Blast hits to 11173 proteins in 538 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 8589%3B Fungi - 214%3B Plants - 2276%3B Viruses - 3%3B Other Eukaryotes - 173 (source: NCBI BLink).; locus_type=protein_coding
AT1G05357.1	chr1:006165457	0.0	W/6165457-6165736	AT1G05357.1 lnc_RNA AT1G05357 ID=AT1G05357.1; Parent=AT1G05357; Name=AT1G05357.1; locus_type=long_noncoding_rna
AT1G17930.1	chr1:006166638	0.0	C/6166638-6166835,6166918-6167298,6167373-6167525,6167632-6168279,6168376-6168432	AT1G17930.1 CDS AT1G17930 ID=AT1G17930.1; Parent=AT1G17930; Name=AT1G17930.1; Note=Aminotransferase-like%2C plant mobile domain family protein; conf_class=2; Alias=MAIN, MAINTENANCE OF MERISTEMS; computational_description=Aminotransferase-like%2C plant mobile domain family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Aminotransferase-like%2C plant mobile domain (InterPro:IPR019557)%3B BEST Arabidopsis thaliana protein match is: Aminotransferase-like%2C plant mobile domain family protein (TAIR:AT2G25010.1)%3B Has 691 Blast hits to 683 proteins in 18 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 691%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18650403, PMID:18775970, PMID:23607329, PMID:24227446, locus:2030878; locus_type=protein_coding
AT1G17930.2	chr1:006166638	0.0	C/6166638-6166835,6166918-6167298,6167373-6167525,6167632-6168279,6168376-6168432	AT1G17930.2 CDS AT1G17930 ID=AT1G17930.2; Parent=AT1G17930; Name=AT1G17930.2; Note=Aminotransferase-like%2C plant mobile domain family protein; Alias=MAIN, MAINTENANCE OF MERISTEMS; Dbxref=PMID:18650403, PMID:18775970, PMID:23607329, PMID:24227446, locus:2030878; computational_description=Aminotransferase-like%2C plant mobile domain family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Aminotransferase-like%2C plant mobile domain (InterPro:IPR019557)%3B BEST Arabidopsis thaliana protein match is: Aminotransferase-like%2C plant mobile domain family protein (TAIR:AT2G25010.1)%3B Has 691 Blast hits to 683 proteins in 18 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 691%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; locus_type=protein_coding
AT1G17940.1	chr1:006169621	0.0	C/6169621-6169708,6169797-6169898,6169989-6170143,6170414-6170503,6170639-6170737,6170852-6170918,6171022-6171118,6171258-6171396,6171476-6171534,6171622-6171696,6171789-6172035	AT1G17940.1 CDS AT1G17940 ID=AT1G17940.1; Parent=AT1G17940; Name=AT1G17940.1; Note=Endosomal targeting BRO1-like domain-containing protein; conf_class=4; computational_description=Endosomal targeting BRO1-like domain-containing protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: N-terminal protein myristoylation%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: BRO1 (InterPro:IPR004328)%3B BEST Arabidopsis thaliana protein match is: Endosomal targeting BRO1-like domain-containing protein (TAIR:AT1G73390.3)%3B Has 122 Blast hits to 122 proteins in 27 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 25%3B Plants - 96%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:12912986, PMID:20032078, locus:2030893; locus_type=protein_coding
AT1G17940.3	chr1:006169621	0.0	C/6169621-6169708,6169797-6169898,6169989-6170143,6170414-6170503,6170639-6170737,6170852-6170918,6171022-6171118,6171258-6171396,6171476-6171534,6171622-6171696,6171789-6172035	AT1G17940.3 CDS AT1G17940 ID=AT1G17940.3; Parent=AT1G17940; Name=AT1G17940.3; Note=Endosomal targeting BRO1-like domain-containing protein; Dbxref=PMID:12912986, PMID:20032078, locus:2030893; computational_description=Endosomal targeting BRO1-like domain-containing protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: N-terminal protein myristoylation%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: BRO1 (InterPro:IPR004328)%3B BEST Arabidopsis thaliana protein match is: Endosomal targeting BRO1-like domain-containing protein (TAIR:AT1G73390.3)%3B Has 122 Blast hits to 122 proteins in 27 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 25%3B Plants - 96%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; locus_type=protein_coding
AT1G17940.5	chr1:006169621	0.0	C/6169621-6169708,6169797-6169898,6169989-6170143,6170414-6170503,6170639-6170737,6170852-6170918,6171022-6171118,6171258-6171396,6171476-6171534,6171622-6171696,6171789-6172035	AT1G17940.5 CDS AT1G17940 ID=AT1G17940.5; Parent=AT1G17940; Name=AT1G17940.5; Note=Endosomal targeting BRO1-like domain-containing protein; Dbxref=PMID:12912986, PMID:20032078, locus:2030893; computational_description=Endosomal targeting BRO1-like domain-containing protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: N-terminal protein myristoylation%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: BRO1 (InterPro:IPR004328)%3B BEST Arabidopsis thaliana protein match is: Endosomal targeting BRO1-like domain-containing protein (TAIR:AT1G73390.3)%3B Has 122 Blast hits to 122 proteins in 27 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 25%3B Plants - 96%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; locus_type=protein_coding
AT1G17940.6	chr1:006169621	0.0	C/6169621-6169708,6169797-6169898,6169989-6170143,6170414-6170503,6170639-6170737,6170852-6170918,6171022-6171118,6171258-6171396,6171476-6171534,6171622-6171696,6171789-6172035	AT1G17940.6 CDS AT1G17940 ID=AT1G17940.6; Parent=AT1G17940; Name=AT1G17940.6; Note=Endosomal targeting BRO1-like domain-containing protein; Dbxref=PMID:12912986, PMID:20032078, locus:2030893; computational_description=Endosomal targeting BRO1-like domain-containing protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: N-terminal protein myristoylation%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: BRO1 (InterPro:IPR004328)%3B BEST Arabidopsis thaliana protein match is: Endosomal targeting BRO1-like domain-containing protein (TAIR:AT1G73390.3)%3B Has 122 Blast hits to 122 proteins in 27 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 25%3B Plants - 96%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; locus_type=protein_coding
AT1G17940.4	chr1:006169873	0.0	C/6169873-6169898,6169989-6170103,6170414-6170503,6170639-6170737,6170852-6170918,6171022-6171118,6171258-6171396,6171476-6171534,6171622-6171696,6171789-6172035	AT1G17940.4 CDS AT1G17940 ID=AT1G17940.4; Parent=AT1G17940; Name=AT1G17940.4; Note=Endosomal targeting BRO1-like domain-containing protein; computational_description=Endosomal targeting BRO1-like domain-containing protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: N-terminal protein myristoylation%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: BRO1 (InterPro:IPR004328)%3B BEST Arabidopsis thaliana protein match is: Endosomal targeting BRO1-like domain-containing protein (TAIR:AT1G73390.3)%3B Has 122 Blast hits to 122 proteins in 27 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 25%3B Plants - 96%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; Dbxref=PMID:12912986, PMID:20032078, locus:2030893; locus_type=protein_coding
AT1G17940.2	chr1:006170321	0.0	C/6170321-6170503,6170639-6170737,6170852-6170918,6171022-6171118,6171258-6171396,6171476-6171534,6171622-6171696,6171789-6172035	AT1G17940.2 CDS AT1G17940 ID=AT1G17940.2; Parent=AT1G17940; Name=AT1G17940.2; Note=Endosomal targeting BRO1-like domain-containing protein; computational_description=Endosomal targeting BRO1-like domain-containing protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: N-terminal protein myristoylation%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: BRO1 (InterPro:IPR004328)%3B BEST Arabidopsis thaliana protein match is: Endosomal targeting BRO1-like domain-containing protein (TAIR:AT1G73390.3)%3B Has 122 Blast hits to 122 proteins in 27 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 25%3B Plants - 96%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; Dbxref=PMID:12912986, PMID:20032078, locus:2030893; locus_type=protein_coding
AT1G17950.1	chr1:006177764	0.0	W/6177764-6177881,6178002-6178427,6178858-6179063	AT1G17950.1 CDS AT1G17950 ID=AT1G17950.1; Parent=AT1G17950; Name=AT1G17950.1; Note=myb domain protein 52; curator_summary=putative transcription factor: R2R3-MYB transcription family; conf_class=2; symbol=MYB52; Alias=ATMYB52, MYB DOMAIN PROTEIN 52, BW52; full_name=myb domain protein 52; computational_description=myb domain protein 52 (MYB52)%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%2C Homeodomain-related (InterPro:IPR012287)%2C Myb transcription factor (InterPro:IPR015495)%3B BEST Arabidopsis thaliana protein match is: myb domain protein 54 (TAIR:AT1G73410.1)%3B Has 8890 Blast hits to 7951 proteins in 553 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 901%3B Fungi - 603%3B Plants - 5404%3B Viruses - 5%3B Other Eukaryotes - 1977 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9839469, PMID:11118137, PMID:11597504, PMID:15078338, PMID:15923329, PMID:16367961, PMID:16463103, PMID:16920880, PMID:16969662, PMID:17565617, PMID:18952777, PMID:19325888, PMID:19674407, PMID:21399993, PMID:22197883, PMID:22995285, PMID:23781226, locus:2030903; locus_type=protein_coding
AT1G17960.1	chr1:006181015	0.0	C/6181015-6181122,6181226-6181297,6181526-6181597,6181696-6181914,6182007-6182099,6182181-6182273,6182369-6182455,6182546-6182578,6182822-6182916,6182973-6183045,6183195-6183495,6183607-6183737	AT1G17960.1 CDS AT1G17960 ID=AT1G17960.1; Parent=AT1G17960; Name=AT1G17960.1; Note=Threonyl-tRNA synthetase; conf_class=6; computational_description=Threonyl-tRNA synthetase%3B FUNCTIONS IN: nucleotide binding%2C aminoacyl-tRNA ligase activity%2C threonine-tRNA ligase activity%2C ATP binding%3B INVOLVED IN: threonyl-tRNA aminoacylation%2C translation%2C tRNA aminoacylation for protein translation%3B LOCATED IN: cytoplasm%3B EXPRESSED IN: inflorescence meristem%2C root%2C pedicel%3B EXPRESSED DURING: 4 anthesis%3B CONTAINS InterPro DOMAIN/s: Threonyl/alanyl tRNA synthetase%2C class II-like%2C putative editing domain (InterPro:IPR018163)%2C Aminoacyl-tRNA synthetase%2C class II (G/ H/ P/ S)%2C conserved domain (InterPro:IPR002314)%2C Beta-grasp fold%2C ferredoxin-type (InterPro:IPR012675)%2C Aminoacyl-tRNA synthetase%2C class II%2C conserved domain (InterPro:IPR006195)%2C TGS-like (InterPro:IPR012676)%2C TGS (InterPro:IPR004095)%2C Anticodon-binding (InterPro:IPR004154)%2C Threonyl-tRNA synthetase%2C class IIa%2C conserved region (InterPro:IPR018158)%3B BEST Arabidopsis thaliana protein match is: Threonyl-tRNA synthetase (TAIR:AT5G26830.1)%3B Has 16132 Blast hits to 11197 proteins in 2892 species: Archae - 329%3B Bacteria - 9775%3B Metazoa - 548%3B Fungi - 378%3B Plants - 140%3B Viruses - 0%3B Other Eukaryotes - 4962 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:16251277, PMID:20736450, locus:2030918; locus_type=protein_coding
AT1G17960.2	chr1:006181015	0.0	C/6181015-6181122,6181226-6181297,6181526-6181597,6181696-6181914,6182007-6182099,6182181-6182273,6182369-6182455,6182546-6182578,6182822-6182916,6183341-6183495,6183607-6183737	AT1G17960.2 CDS AT1G17960 ID=AT1G17960.2; Parent=AT1G17960; Name=AT1G17960.2; Note=Threonyl-tRNA synthetase; computational_description=Threonyl-tRNA synthetase%3B FUNCTIONS IN: nucleotide binding%2C aminoacyl-tRNA ligase activity%2C threonine-tRNA ligase activity%2C ATP binding%3B INVOLVED IN: threonyl-tRNA aminoacylation%2C translation%2C tRNA aminoacylation for protein translation%3B LOCATED IN: cytoplasm%3B EXPRESSED IN: inflorescence meristem%2C root%2C pedicel%3B EXPRESSED DURING: 4 anthesis%3B CONTAINS InterPro DOMAIN/s: Threonyl/alanyl tRNA synthetase%2C class II-like%2C putative editing domain (InterPro:IPR018163)%2C Aminoacyl-tRNA synthetase%2C class II (G/ H/ P/ S)%2C conserved domain (InterPro:IPR002314)%2C Beta-grasp fold%2C ferredoxin-type (InterPro:IPR012675)%2C Aminoacyl-tRNA synthetase%2C class II%2C conserved domain (InterPro:IPR006195)%2C TGS-like (InterPro:IPR012676)%2C TGS (InterPro:IPR004095)%2C Anticodon-binding (InterPro:IPR004154)%2C Threonyl-tRNA synthetase%2C class IIa%2C conserved region (InterPro:IPR018158)%3B BEST Arabidopsis thaliana protein match is: Threonyl-tRNA synthetase (TAIR:AT5G26830.1)%3B Has 16132 Blast hits to 11197 proteins in 2892 species: Archae - 329%3B Bacteria - 9775%3B Metazoa - 548%3B Fungi - 378%3B Plants - 140%3B Viruses - 0%3B Other Eukaryotes - 4962 (source: NCBI BLink).; Dbxref=PMID:16251277, PMID:20736450, locus:2030918; locus_type=protein_coding
AT1G17970.1	chr1:006185032	0.0	W/6185032-6185604,6186171-6186335,6186660-6186758,6186844-6186978,6187068-6187202	AT1G17970.1 CDS AT1G17970 ID=AT1G17970.1; Parent=AT1G17970; Name=AT1G17970.1; Note=RING/U-box superfamily protein; conf_class=2; computational_description=RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G73760.1)%3B Has 8802 Blast hits to 8789 proteins in 273 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2364%3B Fungi - 695%3B Plants - 4341%3B Viruses - 10%3B Other Eukaryotes - 1392 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11983057, PMID:16299171, PMID:20736450, locus:2030933; locus_type=protein_coding
AT1G17970.2	chr1:006185032	0.0	W/6185032-6185604,6186171-6186407	AT1G17970.2 CDS AT1G17970 ID=AT1G17970.2; Parent=AT1G17970; Name=AT1G17970.2; Note=RING/U-box superfamily protein; computational_description=RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G73760.1)%3B Has 8802 Blast hits to 8789 proteins in 273 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2364%3B Fungi - 695%3B Plants - 4341%3B Viruses - 10%3B Other Eukaryotes - 1392 (source: NCBI BLink).; Dbxref=PMID:11983057, PMID:16299171, PMID:20736450, locus:2030933; locus_type=protein_coding
AT1G17980.1	chr1:006187742	0.0	C/6187742-6187781,6187880-6187947,6188033-6188878,6188969-6189133,6189211-6189540,6189627-6189689,6189795-6189908,6190184-6190345,6190435-6190497,6190900-6191007,6191107-6191184,6191314-6191418	AT1G17980.1 CDS AT1G17980 ID=AT1G17980.1; Parent=AT1G17980; Name=AT1G17980.1; Note=poly(A) polymerase 1; curator_summary=Encodes a poly(A) polymerase. Located in the nucleus. It limits founder-cell recruitment to organ primordia and suppresses the salicylic acid-independent immune response downstream of EDS1/PAD4.; conf_class=1; symbol=PAPS1; full_name=poly(A) polymerase 1; computational_description=poly(A) polymerase 1 (PAPS1)%3B CONTAINS InterPro DOMAIN/s: Poly(A) polymerase (InterPro:IPR014492)%2C Poly(A) polymerase%2C central domain (InterPro:IPR007012)%2C Nucleotidyltransferase%2C class I%2C C-terminal-like (InterPro:IPR011068)%2C Nucleotidyl transferase domain (InterPro:IPR002934)%2C Poly(A) polymerase%2C RNA-binding domain (InterPro:IPR007010)%3B BEST Arabidopsis thaliana protein match is: nuclear poly(a) polymerase (TAIR:AT4G32850.9)%3B Has 815 Blast hits to 805 proteins in 221 species: Archae - 0%3B Bacteria - 17%3B Metazoa - 265%3B Fungi - 212%3B Plants - 181%3B Viruses - 0%3B Other Eukaryotes - 140 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15297145, PMID:18479511, PMID:19956626, PMID:22589469, PMID:23918356, PMID:24372773, locus:2030943; locus_type=protein_coding
AT1G17980.2	chr1:006187742	0.0	C/6187742-6187781,6187880-6187947,6188033-6188878,6188969-6189133,6189211-6189540,6189627-6189689,6189795-6189908,6190184-6190318	AT1G17980.2 CDS AT1G17980 ID=AT1G17980.2; Parent=AT1G17980; Name=AT1G17980.2; Note=poly(A) polymerase 1; curator_summary=Encodes a poly(A) polymerase. Located in the nucleus. It limits founder-cell recruitment to organ primordia and suppresses the salicylic acid-independent immune response downstream of EDS1/PAD4.; conf_class=2; symbol=PAPS1; full_name=poly(A) polymerase 1; computational_description=poly(A) polymerase 1 (PAPS1)%3B CONTAINS InterPro DOMAIN/s: Poly(A) polymerase (InterPro:IPR014492)%2C Poly(A) polymerase%2C central domain (InterPro:IPR007012)%2C Nucleotidyltransferase%2C class I%2C C-terminal-like (InterPro:IPR011068)%2C Nucleotidyl transferase domain (InterPro:IPR002934)%2C Poly(A) polymerase%2C RNA-binding domain (InterPro:IPR007010)%3B BEST Arabidopsis thaliana protein match is: nuclear poly(a) polymerase (TAIR:AT4G32850.9)%3B Has 815 Blast hits to 805 proteins in 221 species: Archae - 0%3B Bacteria - 17%3B Metazoa - 265%3B Fungi - 212%3B Plants - 181%3B Viruses - 0%3B Other Eukaryotes - 140 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15297145, PMID:18479511, PMID:19956626, PMID:22589469, PMID:23918356, PMID:24372773, locus:2030943; locus_type=protein_coding
AT1G17990.1	chr1:006192455	0.0	C/6192455-6192762,6192829-6192990,6193092-6193222,6193318-6193458,6193688-6193755	AT1G17990.1 CDS AT1G17990 ID=AT1G17990.1; Parent=AT1G17990; Name=AT1G17990.1; Note=FMN-linked oxidoreductases superfamily protein; conf_class=4; computational_description=FMN-linked oxidoreductases superfamily protein%3B FUNCTIONS IN: oxidoreductase activity%2C FMN binding%2C catalytic activity%3B INVOLVED IN: metabolic process%3B CONTAINS InterPro DOMAIN/s: NADH:flavin oxidoreductase/NADH oxidase%2C N-terminal (InterPro:IPR001155)%2C Aldolase-type TIM barrel (InterPro:IPR013785)%3B BEST Arabidopsis thaliana protein match is: FMN-linked oxidoreductases superfamily protein (TAIR:AT1G18020.1)%3B Has 13076 Blast hits to 13058 proteins in 2049 species: Archae - 127%3B Bacteria - 9786%3B Metazoa - 29%3B Fungi - 859%3B Plants - 433%3B Viruses - 0%3B Other Eukaryotes - 1842 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:14722088, PMID:16214899, PMID:16299169, PMID:16913859, PMID:17096212, PMID:18433503, PMID:23505340, locus:2030948; locus_type=protein_coding
AT1G17990.2	chr1:006192455	0.0	C/6192455-6192762,6192829-6192990,6193092-6193222,6193318-6193434,6193688-6193755	AT1G17990.2 CDS AT1G17990 ID=AT1G17990.2; Parent=AT1G17990; Name=AT1G17990.2; Note=FMN-linked oxidoreductases superfamily protein; conf_class=6; computational_description=FMN-linked oxidoreductases superfamily protein%3B FUNCTIONS IN: oxidoreductase activity%2C FMN binding%2C catalytic activity%3B INVOLVED IN: metabolic process%3B CONTAINS InterPro DOMAIN/s: NADH:flavin oxidoreductase/NADH oxidase%2C N-terminal (InterPro:IPR001155)%2C Aldolase-type TIM barrel (InterPro:IPR013785)%3B BEST Arabidopsis thaliana protein match is: FMN-linked oxidoreductases superfamily protein (TAIR:AT1G18020.1)%3B Has 13076 Blast hits to 13058 proteins in 2049 species: Archae - 127%3B Bacteria - 9786%3B Metazoa - 29%3B Fungi - 859%3B Plants - 433%3B Viruses - 0%3B Other Eukaryotes - 1842 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:14722088, PMID:16214899, PMID:16299169, PMID:16913859, PMID:17096212, PMID:18433503, PMID:23505340, locus:2030948; locus_type=protein_coding
AT1G18000.1	chr1:006194668	0.0	C/6194668-6196047	AT1G18000.1 CDS AT1G18000 ID=AT1G18000.1; Parent=AT1G18000; Name=AT1G18000.1; Note=Major facilitator superfamily protein; conf_class=4; computational_description=Major facilitator superfamily protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: transmembrane transport%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701)%2C Major facilitator superfamily%2C general substrate transporter (InterPro:IPR016196)%3B BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G18010.1)%3B Has 758 Blast hits to 750 proteins in 174 species: Archae - 0%3B Bacteria - 91%3B Metazoa - 141%3B Fungi - 422%3B Plants - 82%3B Viruses - 0%3B Other Eukaryotes - 22 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:12969422, locus:505006129; locus_type=protein_coding
AT1TE20030	chr1:006196273	0.0	C/6196273-6196418	AT1TE20030 transposable_element AT1TE20030 ID=AT1TE20030; Name=AT1TE20030; Alias=ATREP15
AT1TE20035	chr1:006196419	0.0	W/6196419-6197401	AT1TE20035 transposable_element AT1TE20035 ID=AT1TE20035; Name=AT1TE20035; Alias=ATREP15
AT1TE20040	chr1:006198003	0.0	C/6198003-6199615	AT1TE20040 transposable_element AT1TE20040 ID=AT1TE20040; Name=AT1TE20040; Alias=HELITRONY1D
AT1TE20045	chr1:006199616	0.0	C/6199616-6199686	AT1TE20045 transposable_element AT1TE20045 ID=AT1TE20045; Name=AT1TE20045; Alias=ATREP3
AT1TE20050	chr1:006199687	0.0	W/6199687-6199844	AT1TE20050 transposable_element AT1TE20050 ID=AT1TE20050; Name=AT1TE20050; Alias=BRODYAGA2
AT1G18010.1	chr1:006199980	0.0	W/6199980-6201359	AT1G18010.1 CDS AT1G18010 ID=AT1G18010.1; Parent=AT1G18010; Name=AT1G18010.1; Note=Major facilitator superfamily protein; conf_class=1; computational_description=Major facilitator superfamily protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: transmembrane transport%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701)%2C Major facilitator superfamily%2C general substrate transporter (InterPro:IPR016196)%3B BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G18000.1)%3B Has 758 Blast hits to 750 proteins in 174 species: Archae - 0%3B Bacteria - 91%3B Metazoa - 141%3B Fungi - 422%3B Plants - 82%3B Viruses - 0%3B Other Eukaryotes - 22 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12969422, PMID:16299181, PMID:16972165, locus:2194030; locus_type=protein_coding
AT1G18020.1	chr1:006202272	0.0	W/6202272-6202339,6202569-6202709,6202805-6202935,6203037-6203198,6203265-6203572	AT1G18020.1 CDS AT1G18020 ID=AT1G18020.1; Parent=AT1G18020; Name=AT1G18020.1; Note=FMN-linked oxidoreductases superfamily protein; conf_class=1; computational_description=FMN-linked oxidoreductases superfamily protein%3B FUNCTIONS IN: oxidoreductase activity%2C FMN binding%2C catalytic activity%3B INVOLVED IN: metabolic process%3B CONTAINS InterPro DOMAIN/s: NADH:flavin oxidoreductase/NADH oxidase%2C N-terminal (InterPro:IPR001155)%2C Aldolase-type TIM barrel (InterPro:IPR013785)%3B BEST Arabidopsis thaliana protein match is: FMN-linked oxidoreductases superfamily protein (TAIR:AT1G17990.1)%3B Has 13076 Blast hits to 13058 proteins in 2049 species: Archae - 127%3B Bacteria - 9786%3B Metazoa - 29%3B Fungi - 859%3B Plants - 433%3B Viruses - 0%3B Other Eukaryotes - 1842 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16972165, PMID:18433503, locus:1005716725; locus_type=protein_coding
AT1G18030.1	chr1:006204400	0.0	W/6204400-6204716,6204877-6204985,6205087-6205123,6205230-6205274,6205435-6205487,6205602-6205763,6205849-6205932,6206125-6206214,6206320-6206367,6206568-6206678	AT1G18030.1 CDS AT1G18030 ID=AT1G18030.1; Parent=AT1G18030; Name=AT1G18030.1; Note=Protein phosphatase 2C family protein; conf_class=2; computational_description=Protein phosphatase 2C family protein%3B FUNCTIONS IN: protein serine/threonine phosphatase activity%2C catalytic activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932)%2C Protein phosphatase 2C (InterPro:IPR015655)%2C Protein phosphatase 2C%2C N-terminal (InterPro:IPR014045)%3B BEST Arabidopsis thaliana protein match is: DNA-binding protein phosphatase 1 (TAIR:AT2G25620.1)%3B Has 6093 Blast hits to 6074 proteins in 324 species: Archae - 4%3B Bacteria - 54%3B Metazoa - 1500%3B Fungi - 736%3B Plants - 2511%3B Viruses - 9%3B Other Eukaryotes - 1279 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15130549, PMID:19021904, locus:2194035; locus_type=protein_coding
AT1G18030.2	chr1:006204400	0.0	W/6204400-6204716,6204877-6204985,6205087-6205123,6205230-6205274,6205435-6205487,6205602-6205763,6205849-6205932,6206125-6206218,6206320-6206336	AT1G18030.2 CDS AT1G18030 ID=AT1G18030.2; Parent=AT1G18030; Name=AT1G18030.2; Note=Protein phosphatase 2C family protein; conf_class=2; computational_description=Protein phosphatase 2C family protein%3B FUNCTIONS IN: protein serine/threonine phosphatase activity%2C catalytic activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932)%2C Protein phosphatase 2C (InterPro:IPR015655)%2C Protein phosphatase 2C%2C N-terminal (InterPro:IPR014045)%3B BEST Arabidopsis thaliana protein match is: DNA-binding protein phosphatase 1 (TAIR:AT2G25620.1)%3B Has 6093 Blast hits to 6074 proteins in 324 species: Archae - 4%3B Bacteria - 54%3B Metazoa - 1500%3B Fungi - 736%3B Plants - 2511%3B Viruses - 9%3B Other Eukaryotes - 1279 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15130549, PMID:19021904, locus:2194035; locus_type=protein_coding
AT1G05363.1	chr1:006205909	0.0	C/6205909-6206145	AT1G05363.1 antisense_lncRNA AT1G05363 ID=AT1G05363.1; Parent=AT1G05363; Name=AT1G05363.1; description=Natural antisense transcript overlaps with AT1G18030; Note=Natural antisense transcript overlaps with AT1G18030; locus_type=antisense_long_noncoding_rna
AT1G18040.1	chr1:006207128	0.0	C/6207128-6207176,6207281-6207538,6207618-6207853,6208007-6208132,6208562-6208670,6208757-6209055,6209201-6209299	AT1G18040.1 CDS AT1G18040 ID=AT1G18040.1; Parent=AT1G18040; Name=AT1G18040.1; Note=cyclin-dependent kinase D1%3B3; conf_class=2; symbol=CDKD1%3B3; Alias=AT%3BCDCKD%3B3, CYCLIN-DEPENDENT KINASE D1%3B3, CAK2AT; full_name=cyclin-dependent kinase D1%3B3; computational_description=cyclin-dependent kinase D1%3B3 (CDKD1%3B3)%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: cyclin-dependent kinase D1%3B1 (TAIR:AT1G73690.1)%3B Has 119527 Blast hits to 118054 proteins in 4087 species: Archae - 74%3B Bacteria - 13556%3B Metazoa - 44153%3B Fungi - 12365%3B Plants - 29368%3B Viruses - 395%3B Other Eukaryotes - 19616 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11971144, PMID:12913170, PMID:15078335, PMID:15610358, PMID:15908605, PMID:16024551, PMID:16219920, PMID:16412088, PMID:16489130, PMID:18775970, PMID:18923020, PMID:20706207, PMID:21477822, PMID:22547781, locus:2194045; locus_type=protein_coding
AT1G05367.1	chr1:006208146	0.0	W/6208146-6208461	AT1G05367.1 antisense_lncRNA AT1G05367 ID=AT1G05367.1; Parent=AT1G05367; Name=AT1G05367.1; description=Natural antisense transcript overlaps with AT1G18040; Note=Natural antisense transcript overlaps with AT1G18040; locus_type=antisense_long_noncoding_rna
AT1TE20080	chr1:006209602	0.0	C/6209602-6209717	AT1TE20080 transposable_element AT1TE20080 ID=AT1TE20080; Name=AT1TE20080; Alias=ATMU3N1
AT1G18050.1	chr1:006209962	0.0	C/6209962-6210242,6210485-6210555,6211266-6211588	AT1G18050.1 CDS AT1G18050 ID=AT1G18050.1; Parent=AT1G18050; Name=AT1G18050.1; Note=SWAP/surp RNA-binding domain protein; conf_class=9; computational_description=SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein%3B FUNCTIONS IN: RNA binding%3B INVOLVED IN: RNA processing%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061)%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G30370.1)%3B Has 226 Blast hits to 225 proteins in 72 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 119%3B Fungi - 11%3B Plants - 84%3B Viruses - 0%3B Other Eukaryotes - 12 (source: NCBI BLink).; conf_rating=*; Dbxref=PMID:16972165, PMID:18650403, locus:2194050; locus_type=protein_coding
AT1TE20085	chr1:006211027	0.0	W/6211027-6211309	AT1TE20085 transposable_element AT1TE20085 ID=AT1TE20085; Name=AT1TE20085; Alias=VANDAL12
AT1TE20090	chr1:006211689	0.0	W/6211689-6211987	AT1TE20090 transposable_element AT1TE20090 ID=AT1TE20090; Name=AT1TE20090; Alias=ATREP16
AT1G18060.1	chr1:006212065	0.0	C/6212065-6212355,6212485-6212544,6212650-6212832,6213168-6213314	AT1G18060.1 CDS AT1G18060 ID=AT1G18060.1; Parent=AT1G18060; Name=AT1G18060.1; Note=microbial collagenase; conf_class=2; computational_description=unknown protein%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B Has 74 Blast hits to 74 proteins in 29 species: Archae - 0%3B Bacteria - 19%3B Metazoa - 0%3B Fungi - 0%3B Plants - 49%3B Viruses - 0%3B Other Eukaryotes - 6 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:16972165, PMID:18315867, PMID:18650403, locus:2194120; locus_type=protein_coding
AT1G18070.1	chr1:006214236	0.0	C/6214236-6214294,6214378-6214450,6214585-6214749,6214830-6214894,6215018-6215153,6215239-6215344,6215593-6215743,6215827-6215891,6215979-6216133,6216227-6216289,6216415-6216486,6216629-6216674,6216758-6216869,6217081-6217185,6217294-6217347,6217453-6217503,6217580-6217654,6217737-6217778,6218208-6218211	AT1G18070.1 CDS AT1G18070 ID=AT1G18070.1; Parent=AT1G18070; Name=AT1G18070.1; Note=Translation elongation factor EF1A/initiation factor IF2gamma family protein; conf_class=2; computational_description=Translation elongation factor EF1A/initiation factor IF2gamma family protein%3B FUNCTIONS IN: translation factor activity%2C nucleic acid binding%2C GTP binding%2C translation release factor activity%2C GTPase activity%3B INVOLVED IN: translational termination%3B LOCATED IN: vacuole%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A%2C C-terminal (InterPro:IPR004160)%2C Translation elongation factor EFTu/EF1A%2C domain 2 (InterPro:IPR004161)%2C Translation elongation factor EF1A/initiation factor IF2gamma%2C C-terminal (InterPro:IPR009001)%2C Protein synthesis factor%2C GTP-binding (InterPro:IPR000795)%2C Translation elongation/initiation factor/Ribosomal%2C beta-barrel (InterPro:IPR009000)%2C Yeast eukaryotic release factor (InterPro:IPR003285)%3B BEST Arabidopsis thaliana protein match is: GTP binding Elongation factor Tu family protein (TAIR:AT5G60390.3)%3B Has 80701 Blast hits to 80623 proteins in 18440 species: Archae - 844%3B Bacteria - 33853%3B Metazoa - 20485%3B Fungi - 12327%3B Plants - 1789%3B Viruses - 3%3B Other Eukaryotes - 11400 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15539469, PMID:16520461, PMID:18775970, PMID:23148892, locus:2194115; locus_type=protein_coding
AT1G18070.2	chr1:006214236	0.0	C/6214236-6214294,6214378-6214450,6214585-6214749,6214830-6214894,6215018-6215153,6215239-6215344,6215593-6215743,6215827-6215891,6215979-6216133,6216227-6216289,6216415-6216486,6216629-6216674,6216758-6216869,6217081-6217185,6217294-6217347,6217453-6217503,6217580-6217654,6217737-6217778,6218208-6218211	AT1G18070.2 CDS AT1G18070 ID=AT1G18070.2; Parent=AT1G18070; Name=AT1G18070.2; Note=Translation elongation factor EF1A/initiation factor IF2gamma family protein; conf_class=2; computational_description=Translation elongation factor EF1A/initiation factor IF2gamma family protein%3B FUNCTIONS IN: translation factor activity%2C nucleic acid binding%2C GTP binding%2C translation release factor activity%2C GTPase activity%3B INVOLVED IN: translational termination%3B LOCATED IN: vacuole%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A%2C C-terminal (InterPro:IPR004160)%2C Translation elongation factor EFTu/EF1A%2C domain 2 (InterPro:IPR004161)%2C Translation elongation factor EF1A/initiation factor IF2gamma%2C C-terminal (InterPro:IPR009001)%2C Protein synthesis factor%2C GTP-binding (InterPro:IPR000795)%2C Translation elongation/initiation factor/Ribosomal%2C beta-barrel (InterPro:IPR009000)%2C Yeast eukaryotic release factor (InterPro:IPR003285)%3B BEST Arabidopsis thaliana protein match is: GTP binding Elongation factor Tu family protein (TAIR:AT5G60390.3)%3B Has 80701 Blast hits to 80623 proteins in 18440 species: Archae - 844%3B Bacteria - 33853%3B Metazoa - 20485%3B Fungi - 12327%3B Plants - 1789%3B Viruses - 3%3B Other Eukaryotes - 11400 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15539469, PMID:16520461, PMID:18775970, PMID:23148892, locus:2194115; locus_type=protein_coding
AT1G18070.3	chr1:006214236	0.0	C/6214236-6214294,6214378-6214450,6214585-6214749,6214830-6214894,6215018-6215153,6215239-6215377,6215593-6215743,6215827-6215891,6215979-6216133,6216227-6216289,6216415-6216486,6216629-6216674,6216758-6216869,6217081-6217185,6217294-6217347,6217453-6217503,6217580-6217654,6217737-6217778,6218208-6218211	AT1G18070.3 CDS AT1G18070 ID=AT1G18070.3; Parent=AT1G18070; Name=AT1G18070.3; Note=Translation elongation factor EF1A/initiation factor IF2gamma family protein; conf_class=3; computational_description=Translation elongation factor EF1A/initiation factor IF2gamma family protein%3B FUNCTIONS IN: translation factor activity%2C nucleic acid binding%2C GTP binding%2C translation release factor activity%2C GTPase activity%3B INVOLVED IN: translational termination%3B LOCATED IN: vacuole%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A%2C C-terminal (InterPro:IPR004160)%2C Translation elongation factor EFTu/EF1A%2C domain 2 (InterPro:IPR004161)%2C Translation elongation factor EF1A/initiation factor IF2gamma%2C C-terminal (InterPro:IPR009001)%2C Protein synthesis factor%2C GTP-binding (InterPro:IPR000795)%2C Translation elongation/initiation factor/Ribosomal%2C beta-barrel (InterPro:IPR009000)%2C Yeast eukaryotic release factor (InterPro:IPR003285)%3B BEST Arabidopsis thaliana protein match is: GTP binding Elongation factor Tu family protein (TAIR:AT5G60390.3)%3B Has 80701 Blast hits to 80623 proteins in 18440 species: Archae - 844%3B Bacteria - 33853%3B Metazoa - 20485%3B Fungi - 12327%3B Plants - 1789%3B Viruses - 3%3B Other Eukaryotes - 11400 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15539469, PMID:16520461, PMID:18775970, PMID:23148892, locus:2194115; locus_type=protein_coding
AT1TE20110	chr1:006218531	0.0	C/6218531-6219237	AT1TE20110 transposable_element AT1TE20110 ID=AT1TE20110; Name=AT1TE20110; Alias=ATREP2
AT1TE20115	chr1:006219238	0.0	W/6219238-6219260	AT1TE20115 transposable_element AT1TE20115 ID=AT1TE20115; Name=AT1TE20115; Alias=VANDAL8
AT1G05373.1	chr1:006219399	0.0	W/6219399-6219615	AT1G05373.1 lnc_RNA AT1G05373 ID=AT1G05373.1; Parent=AT1G05373; Name=AT1G05373.1; locus_type=long_noncoding_rna
AT1G05377.1	chr1:006219474	0.0	C/6219474-6219730	AT1G05377.1 lnc_RNA AT1G05377 ID=AT1G05377.1; Parent=AT1G05377; Name=AT1G05377.1; locus_type=long_noncoding_rna
AT1G18075.1	chr1:006220646	0.0	W/6220646-6220841	AT1G18075.1 miRNA_primary_transcript AT1G18075 ID=AT1G18075.1; Parent=AT1G18075; Alias=p_MI0000218; Name=ath-MIR159b; symbol=MIR159B; curator_summary=Encodes a microRNA that targets several MYB family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUUGGAUUGAAGGGAGCUCUU. Functions redundantly with MIR159A. Plants that are doubly mutated for MIR159AB have curled leaves and reduced stature.; Note=microRNA ath-MIR159b precursor; full_name=microRNA159B; Dbxref=PMID:15200956, PMID:18829588, PMID:19622176, PMID:19816405, PMID:20705188, PMID:20699403, PMID:21029441, PMID:21441434, PMID:21569383, PMID:22511963, PMID:22494113, PMID:22938544, PMID:23133634, PMID:23196831, PMID:24103298, PMID:24474808, PMID:24492335, PMID:24626050, locus:1009023126, PMID:15200956, PMID:18829588, PMID:19622176, PMID:19816405, PMID:20705188, PMID:20699403, PMID:21029441, PMID:21441434, PMID:21569383, PMID:22511963, PMID:22494113, PMID:22938544, PMID:23133634, PMID:23196831, PMID:24103298, PMID:24474808, PMID:24492335, PMID:24626050, locus:1009023126; locus_type=mirna
ath-miR159b-5p	chr1:006220650	0.0	W/6220650-6220670	ath-miR159b-5p miRNA ath-miR159b-5p ID=ath-miR159b-5p; Alias=MIMAT0031889; Name=ath-miR159b-5p; Derives_from=AT1G18075.1; Note=microRNA ath-miR159b-5p; computational_description=mature miRNA accession:MIMAT0031889
ath-miR159b-3p	chr1:006220813	0.0	W/6220813-6220833	ath-miR159b-3p miRNA ath-miR159b-3p ID=ath-miR159b-3p; Alias=MIMAT0000207; Name=ath-miR159b-3p; Derives_from=AT1G18075.1; Note=microRNA ath-miR159b-3p; computational_description=mature miRNA accession:MIMAT0000207
AT1G18080.1	chr1:006222325	0.0	W/6222325-6223206,6223800-6223901	AT1G18080.1 CDS AT1G18080 ID=AT1G18080.1; Parent=AT1G18080; Name=AT1G18080.1; Note=Transducin/WD40 repeat-like superfamily protein; curator_summary=Encodes the Arabidopsis thaliana homolog of the tobacco WD-40 repeat ArcA gene. It is a scaffold protein that acts downstream of and is phosphorylated by WNK8 in the glucose responsiveness and flowering pathways . Knockout mutants show insensitivity to gibberellin in GA-induced seed germination.; conf_class=2; symbol=ATARCA; computational_description=ATARCA%3B FUNCTIONS IN: nucleotide binding%3B INVOLVED IN: response to cadmium ion%3B LOCATED IN: cytosolic ribosome%2C chloroplast%2C heterotrimeric G-protein complex%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782)%2C WD40 repeat%2C conserved site (InterPro:IPR019775)%2C WD40 repeat (InterPro:IPR001680)%2C G-protein beta WD-40 repeat%2C region (InterPro:IPR020472)%2C WD40 repeat-like-containing domain (InterPro:IPR011046)%2C WD40-repeat-containing domain (InterPro:IPR017986)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C WD40 repeat%2C subgroup (InterPro:IPR019781)%3B BEST Arabidopsis thaliana protein match is: receptor for activated C kinase 1B (TAIR:AT1G48630.1)%3B Has 86693 Blast hits to 36128 proteins in 955 species: Archae - 98%3B Bacteria - 10140%3B Metazoa - 33986%3B Fungi - 19643%3B Plants - 11429%3B Viruses - 3%3B Other Eukaryotes - 11394 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12777046, PMID:15010618, PMID:15632092, PMID:15734919, PMID:15821981, PMID:15769804, PMID:15955926, PMID:16247729, PMID:16502469, PMID:16520461, PMID:16679420, PMID:16972165, PMID:18650403, PMID:18947417, PMID:18715992, PMID:19651700, PMID:19832940, PMID:20118269, PMID:21098678, PMID:22068106, PMID:22195043, PMID:22951405, PMID:23435172, PMID:24280008, PMID:25489024, PMID:24591271, PMID:25625317, locus:2194060; locus_type=protein_coding
AT1G18090.1	chr1:006224539	0.0	W/6224539-6224616,6224751-6224787,6224974-6225148,6225246-6225324,6225744-6225788,6225866-6226015,6226114-6226228,6226314-6226414,6226500-6226597,6226681-6226773,6226953-6227715	AT1G18090.1 CDS AT1G18090 ID=AT1G18090.1; Parent=AT1G18090; Name=AT1G18090.1; Note=5'-3' exonuclease family protein; conf_class=4; computational_description=5'-3' exonuclease family protein%3B FUNCTIONS IN: DNA binding%2C catalytic activity%2C nuclease activity%3B INVOLVED IN: DNA repair%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: XPG conserved site (InterPro:IPR019974)%2C XPG N-terminal (InterPro:IPR006085)%2C DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084)%2C 5%26apos%3B-3%26apos%3B exonuclease%2C C-terminal subdomain (InterPro:IPR020045)%2C Helix-hairpin-helix motif%2C class 2 (InterPro:IPR008918)%2C XPG/RAD2 endonuclease (InterPro:IPR006086)%3B BEST Arabidopsis thaliana protein match is: 5'-3' exonuclease family protein (TAIR:AT1G29630.2)%3B Has 2134 Blast hits to 2045 proteins in 397 species: Archae - 265%3B Bacteria - 69%3B Metazoa - 518%3B Fungi - 574%3B Plants - 189%3B Viruses - 16%3B Other Eukaryotes - 503 (source: NCBI BLink).; conf_rating=***; Dbxref=locus:2194085; locus_type=protein_coding
AT1G18090.2	chr1:006224539	0.0	W/6224539-6224616,6224751-6224787,6224974-6225152,6225250-6225324,6225744-6225788,6225866-6226015,6226114-6226228,6226314-6226414,6226500-6226597,6226681-6226773,6226953-6227715	AT1G18090.2 CDS AT1G18090 ID=AT1G18090.2; Parent=AT1G18090; Name=AT1G18090.2; Note=5'-3' exonuclease family protein; conf_class=2; computational_description=5'-3' exonuclease family protein%3B FUNCTIONS IN: DNA binding%2C catalytic activity%2C nuclease activity%3B INVOLVED IN: DNA repair%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: XPG conserved site (InterPro:IPR019974)%2C XPG N-terminal (InterPro:IPR006085)%2C DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084)%2C 5%26apos%3B-3%26apos%3B exonuclease%2C C-terminal subdomain (InterPro:IPR020045)%2C Helix-hairpin-helix motif%2C class 2 (InterPro:IPR008918)%2C XPG/RAD2 endonuclease (InterPro:IPR006086)%3B BEST Arabidopsis thaliana protein match is: 5'-3' exonuclease family protein (TAIR:AT1G29630.2)%3B Has 2134 Blast hits to 2045 proteins in 397 species: Archae - 265%3B Bacteria - 69%3B Metazoa - 518%3B Fungi - 574%3B Plants - 189%3B Viruses - 16%3B Other Eukaryotes - 503 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2194085; locus_type=protein_coding
AT1G18100.1	chr1:006228049	0.0	C/6228049-6228272,6229125-6229165,6229292-6229353,6229916-6230110	AT1G18100.1 CDS AT1G18100 ID=AT1G18100.1; Parent=AT1G18100; Name=AT1G18100.1; Note=PEBP (phosphatidylethanolamine-binding protein) family protein; curator_summary=Encodes a member of the FT and TFL1 family of phosphatidylethanolamine-binding proteins. It is expressed in seeds and up-regulated in response to ABA. Loss of function mutants show decreased rate of germination in the presence of ABA. ABA dependent regulation is mediated by both ABI3 and ABI5. ABI5 promotes MFT expression%2C primarily in the radicle-hypocotyl transition zone and ABI3 suppresses it in the seed.; conf_class=2; symbol=E12A11; computational_description=E12A11%3B CONTAINS InterPro DOMAIN/s: Phosphatidylethanolamine-binding%2C conserved site (InterPro:IPR001858)%2C Phosphatidylethanolamine-binding protein PEBP (InterPro:IPR008914)%3B BEST Arabidopsis thaliana protein match is: PEBP (phosphatidylethanolamine-binding protein) family protein (TAIR:AT5G03840.1)%3B Has 2417 Blast hits to 2417 proteins in 371 species: Archae - 0%3B Bacteria - 118%3B Metazoa - 639%3B Fungi - 192%3B Plants - 1429%3B Viruses - 3%3B Other Eukaryotes - 36 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16297073, PMID:16648215, PMID:18203732, PMID:20551347, PMID:20935478, PMID:22128331, PMID:23590427, PMID:23754415, PMID:24444091, PMID:24879400, locus:2194100; locus_type=protein_coding
AT1G05383.1	chr1:006228598	0.0	W/6228598-6229147	AT1G05383.1 antisense_lncRNA AT1G05383 ID=AT1G05383.1; Parent=AT1G05383; Name=AT1G05383.1; description=Natural antisense transcript overlaps with AT1G18100; Note=Natural antisense transcript overlaps with AT1G18100; locus_type=antisense_long_noncoding_rna
AT1TE20150	chr1:006230216	0.0	C/6230216-6230359	AT1TE20150 transposable_element AT1TE20150 ID=AT1TE20150; Name=AT1TE20150; Alias=ATREP11
AT1TE20155	chr1:006230360	0.0	C/6230360-6230391	AT1TE20155 transposable_element AT1TE20155 ID=AT1TE20155; Name=AT1TE20155; Alias=HELITRONY1E
AT1TE20160	chr1:006230392	0.0	C/6230392-6231451	AT1TE20160 transposable_element AT1TE20160 ID=AT1TE20160; Name=AT1TE20160; Alias=HELITRONY1E
AT1G18120.1	chr1:006232092	0.0	W/6232092-6233926	AT1G18120.1 pseudogenic_transcript AT1G18120 ID=AT1G18120.1; Parent=AT1G18120; Name=AT1G18120.1; index=1; Note=pseudogene; computational_description=pseudogene%2C putative myrosinase-associated protein%2C blastp match of 46%25 identity and 1.7e-57 P-value to GP|6522943|emb|CAB62165.1||AJ223307 myrosinase-associated protein %7BBrassica napus%7D; Dbxref=locus:2194070, locus:2194070; locus_type=pseudogene
AT1TE20165	chr1:006232924	0.0	W/6232924-6233516	AT1TE20165 transposable_element AT1TE20165 ID=AT1TE20165; Name=AT1TE20165; Alias=ATREP1
AT1TE20170	chr1:006233517	0.0	W/6233517-6233615	AT1TE20170 transposable_element AT1TE20170 ID=AT1TE20170; Name=AT1TE20170; Alias=HELITRONY3
AT1TE20175	chr1:006233880	0.0	C/6233880-6233920	AT1TE20175 transposable_element AT1TE20175 ID=AT1TE20175; Name=AT1TE20175; Alias=ATREP10A
AT1TE20180	chr1:006233921	0.0	C/6233921-6235720	AT1TE20180 transposable_element AT1TE20180 ID=AT1TE20180; Name=AT1TE20180; Alias=ATREP10D
AT1G18130.1	chr1:006235895	0.0	W/6235895-6235942,6238093-6238314,6238410-6238481,6238567-6238638,6238716-6238799	AT1G18130.1 CDS AT1G18130 ID=AT1G18130.1; Parent=AT1G18130; Name=AT1G18130.1; Note=Class II aaRS and biotin synthetases superfamily protein; conf_class=6; computational_description=Class II aaRS and biotin synthetases superfamily protein%3B FUNCTIONS IN: threonine-tRNA ligase activity%2C aminoacyl-tRNA ligase activity%2C ATP binding%3B INVOLVED IN: threonyl-tRNA aminoacylation%2C translation%3B LOCATED IN: membrane%3B EXPRESSED IN: leaf%3B CONTAINS InterPro DOMAIN/s: Anticodon-binding (InterPro:IPR004154)%2C Threonyl-tRNA synthetase%2C class IIa%2C conserved region (InterPro:IPR018158)%3B BEST Arabidopsis thaliana protein match is: Threonyl-tRNA synthetase (TAIR:AT5G26830.1)%3B Has 8735 Blast hits to 8735 proteins in 2871 species: Archae - 292%3B Bacteria - 5591%3B Metazoa - 245%3B Fungi - 244%3B Plants - 92%3B Viruses - 0%3B Other Eukaryotes - 2271 (source: NCBI BLink).; conf_rating=**; Dbxref=locus:2194080; locus_type=protein_coding
AT1TE20185	chr1:006236163	0.0	W/6236163-6236229	AT1TE20185 transposable_element AT1TE20185 ID=AT1TE20185; Name=AT1TE20185; Alias=BRODYAGA2
AT1TE20190	chr1:006236230	0.0	W/6236230-6236274	AT1TE20190 transposable_element AT1TE20190 ID=AT1TE20190; Name=AT1TE20190; Alias=HELITRONY3
AT1TE20195	chr1:006236275	0.0	W/6236275-6237764	AT1TE20195 transposable_element AT1TE20195 ID=AT1TE20195; Name=AT1TE20195; Alias=ARNOLDY2
AT1TE20200	chr1:006237765	0.0	C/6237765-6237963	AT1TE20200 transposable_element AT1TE20200 ID=AT1TE20200; Name=AT1TE20200; Alias=HELITRONY3
AT1G18140.1	chr1:006238986	0.0	C/6238986-6240103,6240205-6240333,6240564-6240808,6240911-6241062,6241292-6241393	AT1G18140.1 CDS AT1G18140 ID=AT1G18140.1; Parent=AT1G18140; Name=AT1G18140.1; Note=laccase 1; curator_summary=putative laccase%2C a member of laccase family of genes (with 17 members in Arabidopsis).; conf_class=1; symbol=LAC1; Alias=ATLAC1; full_name=laccase 1; computational_description=laccase 1 (LAC1)%3B FUNCTIONS IN: laccase activity%3B INVOLVED IN: oxidation reduction%2C lignin catabolic process%3B LOCATED IN: endomembrane system%2C apoplast%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Multicopper oxidase%2C type 3 (InterPro:IPR011707)%2C Laccase (InterPro:IPR017761)%2C Multicopper oxidase%2C type 2 (InterPro:IPR011706)%2C Cupredoxin (InterPro:IPR008972)%2C Multicopper oxidase%2C copper-binding site (InterPro:IPR002355)%2C Multicopper oxidase%2C type 1 (InterPro:IPR001117)%3B BEST Arabidopsis thaliana protein match is: laccase 17 (TAIR:AT5G60020.1)%3B Has 10262 Blast hits to 8380 proteins in 1481 species: Archae - 46%3B Bacteria - 4149%3B Metazoa - 461%3B Fungi - 3664%3B Plants - 1564%3B Viruses - 0%3B Other Eukaryotes - 378 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15940465, PMID:15986216, PMID:16297073, PMID:16804053, PMID:17061125, PMID:20736450, PMID:21063888, locus:2194110; locus_type=protein_coding
AT1G18150.1	chr1:006244641	0.0	C/6244641-6244718,6244818-6245016,6245107-6245223,6245311-6245384,6245499-6245636,6245728-6245883,6245996-6246145,6246304-6246363,6246466-6246593,6246686-6247088,6247316-6247582	AT1G18150.1 CDS AT1G18150 ID=AT1G18150.1; Parent=AT1G18150; Name=AT1G18150.1; Note=Protein kinase superfamily protein; curator_summary=Encodes mitogen-activated protein kinase 8 (MPK8). MPK8 connects protein phosphorylation%2C Ca2+%2C and ROS in the wound-signaling pathway.; conf_class=2; symbol=ATMPK8; computational_description=ATMPK8%3B FUNCTIONS IN: MAP kinase activity%3B INVOLVED IN: signal transduction%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C MAP kinase%2C conserved site (InterPro:IPR003527)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%3B BEST Arabidopsis thaliana protein match is: MAP kinase 15 (TAIR:AT1G73670.1)%3B Has 120729 Blast hits to 119418 proteins in 3824 species: Archae - 100%3B Bacteria - 13765%3B Metazoa - 44723%3B Fungi - 12383%3B Plants - 29341%3B Viruses - 570%3B Other Eukaryotes - 19847 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11544109, PMID:12119167, PMID:14576160, PMID:16537113, PMID:17933903, PMID:18775970, PMID:18854047, PMID:20736450, PMID:21419340, PMID:21477822, PMID:22631563, PMID:23282329, locus:2194040; locus_type=protein_coding
AT1G18150.2	chr1:006244641	0.0	C/6244641-6244718,6244818-6245016,6245107-6245223,6245311-6245384,6245499-6245636,6245728-6245883,6245996-6246145,6246304-6246363,6246466-6246593,6246686-6247088,6247316-6247582	AT1G18150.2 CDS AT1G18150 ID=AT1G18150.2; Parent=AT1G18150; Name=AT1G18150.2; Note=Protein kinase superfamily protein; curator_summary=Encodes mitogen-activated protein kinase 8 (MPK8). MPK8 connects protein phosphorylation%2C Ca2+%2C and ROS in the wound-signaling pathway.; conf_class=2; symbol=ATMPK8; computational_description=ATMPK8%3B FUNCTIONS IN: MAP kinase activity%3B INVOLVED IN: signal transduction%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C MAP kinase%2C conserved site (InterPro:IPR003527)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%3B BEST Arabidopsis thaliana protein match is: MAP kinase 15 (TAIR:AT1G73670.1)%3B Has 120729 Blast hits to 119418 proteins in 3824 species: Archae - 100%3B Bacteria - 13765%3B Metazoa - 44723%3B Fungi - 12383%3B Plants - 29341%3B Viruses - 570%3B Other Eukaryotes - 19847 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11544109, PMID:12119167, PMID:14576160, PMID:16537113, PMID:17933903, PMID:18775970, PMID:18854047, PMID:20736450, PMID:21419340, PMID:21477822, PMID:22631563, PMID:23282329, locus:2194040; locus_type=protein_coding
AT1G18150.3	chr1:006244641	0.0	C/6244641-6244718,6244818-6245016,6245107-6245223,6245311-6245384,6245499-6245636,6245728-6245883,6245996-6246145,6246304-6246363,6246466-6246593,6246686-6247088,6247316-6247582	AT1G18150.3 CDS AT1G18150 ID=AT1G18150.3; Parent=AT1G18150; Name=AT1G18150.3; Note=Protein kinase superfamily protein; curator_summary=Encodes mitogen-activated protein kinase 8 (MPK8). MPK8 connects protein phosphorylation%2C Ca2+%2C and ROS in the wound-signaling pathway.; conf_class=4; symbol=ATMPK8; computational_description=ATMPK8%3B FUNCTIONS IN: MAP kinase activity%3B INVOLVED IN: signal transduction%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C MAP kinase%2C conserved site (InterPro:IPR003527)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%3B BEST Arabidopsis thaliana protein match is: MAP kinase 15 (TAIR:AT1G73670.1)%3B Has 120729 Blast hits to 119418 proteins in 3824 species: Archae - 100%3B Bacteria - 13765%3B Metazoa - 44723%3B Fungi - 12383%3B Plants - 29341%3B Viruses - 570%3B Other Eukaryotes - 19847 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:11544109, PMID:12119167, PMID:14576160, PMID:16537113, PMID:17933903, PMID:18775970, PMID:18854047, PMID:20736450, PMID:21419340, PMID:21477822, PMID:22631563, PMID:23282329, locus:2194040; locus_type=protein_coding
AT1G18160.1	chr1:006249126	0.0	W/6249126-6249614,6249771-6250211,6250437-6250540,6250893-6252028,6252106-6252146,6252253-6252321,6252404-6252504,6252695-6252773,6252871-6252969,6253040-6253108,6253309-6253358,6253451-6253627,6253712-6253835	AT1G18160.1 CDS AT1G18160 ID=AT1G18160.1; Parent=AT1G18160; Name=AT1G18160.1; Note=Protein kinase superfamily protein; conf_class=1; computational_description=Protein kinase superfamily protein%3B FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity%2C kinase activity%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G11850.1)%3B Has 123759 Blast hits to 122075 proteins in 4739 species: Archae - 100%3B Bacteria - 12949%3B Metazoa - 47184%3B Fungi - 11113%3B Plants - 33371%3B Viruses - 486%3B Other Eukaryotes - 18556 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12119167, PMID:15003235, PMID:15284494, PMID:16429265, PMID:18650403, PMID:21477822, locus:2194055; locus_type=protein_coding
AT1G18160.2	chr1:006249126	0.0	W/6249126-6249614,6249771-6250211,6250437-6250540,6250893-6252028,6252106-6252146,6252253-6252321,6252404-6252504,6252695-6252773,6252871-6252969,6253040-6253108,6253309-6253358,6253451-6253631	AT1G18160.2 CDS AT1G18160 ID=AT1G18160.2; Parent=AT1G18160; Name=AT1G18160.2; Note=Protein kinase superfamily protein; computational_description=Protein kinase superfamily protein%3B FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity%2C kinase activity%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G11850.1)%3B Has 123759 Blast hits to 122075 proteins in 4739 species: Archae - 100%3B Bacteria - 12949%3B Metazoa - 47184%3B Fungi - 11113%3B Plants - 33371%3B Viruses - 486%3B Other Eukaryotes - 18556 (source: NCBI BLink).; Dbxref=PMID:12119167, PMID:15003235, PMID:15284494, PMID:16429265, PMID:18650403, PMID:21477822, locus:2194055; locus_type=protein_coding
AT1G18170.1	chr1:006254291	0.0	W/6254291-6254622,6254769-6254813,6255141-6255507	AT1G18170.1 CDS AT1G18170 ID=AT1G18170.1; Parent=AT1G18170; Name=AT1G18170.1; Note=FKBP-like peptidyl-prolyl cis-trans isomerase family protein; conf_class=1; computational_description=FKBP-like peptidyl-prolyl cis-trans isomerase family protein%3B FUNCTIONS IN: FK506 binding%2C peptidyl-prolyl cis-trans isomerase activity%3B INVOLVED IN: protein folding%3B LOCATED IN: chloroplast thylakoid membrane%2C chloroplast%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase%2C FKBP-type (InterPro:IPR001179)%3B BEST Arabidopsis thaliana protein match is: FKBP-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT1G73655.1)%3B Has 2743 Blast hits to 2728 proteins in 885 species: Archae - 0%3B Bacteria - 1518%3B Metazoa - 283%3B Fungi - 83%3B Plants - 455%3B Viruses - 0%3B Other Eukaryotes - 404 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11719511, PMID:11826309, PMID:14576160, PMID:15047905, PMID:15322131, PMID:18218973, PMID:18431481, PMID:18650403, locus:2194065; locus_type=protein_coding
AT1G18180.1	chr1:006255903	0.0	W/6255903-6255953,6256053-6256122,6256259-6256326,6256402-6256463,6256563-6256644,6256761-6256994,6257103-6257231,6257319-6257380,6257477-6257593,6257695-6257737	AT1G18180.1 CDS AT1G18180 ID=AT1G18180.1; Parent=AT1G18180; Name=AT1G18180.1; Note=3-oxo-5-alpha-steroid 4-dehydrogenase (DUF1295); conf_class=2; computational_description=FUNCTIONS IN: oxidoreductase activity%2C acting on the CH-CH group of donors%3B INVOLVED IN: lipid metabolic process%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: 3-oxo-5-alpha-steroid 4-dehydrogenase%2C C-terminal (InterPro:IPR001104)%2C Protein of unknown function DUF1295 (InterPro:IPR010721)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1295) (TAIR:AT1G73650.3)%3B Has 2065 Blast hits to 2065 proteins in 348 species: Archae - 0%3B Bacteria - 501%3B Metazoa - 79%3B Fungi - 152%3B Plants - 110%3B Viruses - 0%3B Other Eukaryotes - 1223 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15060130, PMID:18650403, PMID:18775970, PMID:22487254, locus:2194090; locus_type=protein_coding
AT1G18180.2	chr1:006255903	0.0	W/6255903-6255953,6256053-6256122,6256259-6256326,6256402-6256463,6256563-6256644,6256761-6256994,6257103-6257231,6257319-6257380,6257477-6257593,6257701-6257701	AT1G18180.2 CDS AT1G18180 ID=AT1G18180.2; Parent=AT1G18180; Name=AT1G18180.2; Note=3-oxo-5-alpha-steroid 4-dehydrogenase (DUF1295); computational_description=FUNCTIONS IN: oxidoreductase activity%2C acting on the CH-CH group of donors%3B INVOLVED IN: lipid metabolic process%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: 3-oxo-5-alpha-steroid 4-dehydrogenase%2C C-terminal (InterPro:IPR001104)%2C Protein of unknown function DUF1295 (InterPro:IPR010721)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1295) (TAIR:AT1G73650.3)%3B Has 2065 Blast hits to 2065 proteins in 348 species: Archae - 0%3B Bacteria - 501%3B Metazoa - 79%3B Fungi - 152%3B Plants - 110%3B Viruses - 0%3B Other Eukaryotes - 1223 (source: NCBI BLink).; Dbxref=PMID:15060130, PMID:18650403, PMID:18775970, PMID:22487254, locus:2194090; locus_type=protein_coding
AT1G18190.1	chr1:006257963	0.0	C/6257963-6258328,6258415-6258462,6258552-6258677,6258812-6258904,6259011-6259063,6259195-6259252,6259478-6259537,6259650-6259760,6259875-6260912,6261272-6261325	AT1G18190.1 CDS AT1G18190 ID=AT1G18190.1; Parent=AT1G18190; Name=AT1G18190.1; Note=golgin Putative 2; curator_summary=This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC2 co-localizes with Golgi markers%2C and this localization appears to be replicated using the C-terminal (508%E2%80%93668 aa) portion of the protein.; conf_class=2; symbol=GC2; full_name=golgin candidate 2; computational_description=golgin candidate 2 (GC2)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: Golgi apparatus%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B BEST Arabidopsis thaliana protein match is: golgin candidate 1 (TAIR:AT2G19950.1)%3B Has 50245 Blast hits to 32562 proteins in 2069 species: Archae - 503%3B Bacteria - 6561%3B Metazoa - 24889%3B Fungi - 4466%3B Plants - 2316%3B Viruses - 153%3B Other Eukaryotes - 11357 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15020757, PMID:18182439, PMID:21284606, locus:2194075; locus_type=protein_coding
AT1G18191.1	chr1:006261991	0.0	C/6261991-6262470	AT1G18191.1 pseudogenic_transcript AT1G18191 ID=AT1G18191.1; Parent=AT1G18191; Name=AT1G18191.1; curator_summary=Pseudogene of AT1G18200%3B AtRABA6b (Arabidopsis Rab GTPase homolog A6b)%3B GTP binding; Note=pseudogene; Dbxref=locus:5019474613; computational_description=pseudogene of Rab GTPase-like A1I protein; locus_type=pseudogene
AT1G18193.1	chr1:006262602	0.0	W/6262602-6262687,6262746-6262813,6262908-6262957,6263030-6263158	AT1G18193.1 CDS AT1G18193 ID=AT1G18193.1; Parent=AT1G18193; Name=AT1G18193.1; Note=hypothetical protein; locus_type=protein_coding
AT1G18197.2	chr1:006264247	0.0	C/6264247-6264412,6264524-6264762	AT1G18197.2 CDS AT1G18197 ID=AT1G18197.2; Parent=AT1G18197; Name=AT1G18197.2; Note=GCK domain protein; locus_type=protein_coding
AT1G18197.1	chr1:006264442	0.0	C/6264442-6264762	AT1G18197.1 CDS AT1G18197 ID=AT1G18197.1; Parent=AT1G18197; Name=AT1G18197.1; Note=GCK domain protein; locus_type=protein_coding
AT1G18200.1	chr1:006265416	0.0	C/6265416-6265884,6266439-6266659	AT1G18200.1 CDS AT1G18200 ID=AT1G18200.1; Parent=AT1G18200; Name=AT1G18200.1; Note=Rab GTPase-like A1I protein; conf_class=2; symbol=RABA6b; Alias=AtRABA6b, RAB GTPase homolog A6B; full_name=RAB GTPase homolog A6B; computational_description=RAB GTPase homolog A6B (RABA6b)%3B FUNCTIONS IN: GTP binding%2C GTPase activity%3B INVOLVED IN: intracellular protein transport%2C signal transduction%2C nucleocytoplasmic transport%2C protein transport%2C small GTPase mediated signal transduction%3B LOCATED IN: intracellular%3B CONTAINS InterPro DOMAIN/s: Ran GTPase (InterPro:IPR002041)%2C Ras (InterPro:IPR013753)%2C Ras small GTPase%2C Ras type (InterPro:IPR003577)%2C Rab11-related (InterPro:IPR015595)%2C Small GTPase%2C Rho type (InterPro:IPR003578)%2C Small GTP-binding protein (InterPro:IPR005225)%2C Ras GTPase (InterPro:IPR001806)%2C Ras small GTPase%2C Rab type (InterPro:IPR003579)%2C Small GTPase (InterPro:IPR020851)%3B BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A6A (TAIR:AT1G73640.1)%3B Has 27350 Blast hits to 27317 proteins in 747 species: Archae - 26%3B Bacteria - 153%3B Metazoa - 14378%3B Fungi - 3650%3B Plants - 3208%3B Viruses - 20%3B Other Eukaryotes - 5915 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12644670, locus:2194095; locus_type=protein_coding
AT1G18210.1	chr1:006268273	0.0	C/6268273-6268785	AT1G18210.1 CDS AT1G18210 ID=AT1G18210.1; Parent=AT1G18210; Name=AT1G18210.1; Note=Calcium-binding EF-hand family protein; conf_class=1; computational_description=Calcium-binding EF-hand family protein%3B FUNCTIONS IN: calcium ion binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%2C vacuole%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: EF-Hand 1%2C calcium-binding site (InterPro:IPR018247)%2C EF-HAND 2 (InterPro:IPR018249)%2C EF-hand-like domain (InterPro:IPR011992)%2C Calcium-binding EF-hand (InterPro:IPR002048)%2C EF-hand (InterPro:IPR018248)%3B BEST Arabidopsis thaliana protein match is: EF hand calcium-binding protein family (TAIR:AT1G73630.1)%3B Has 26408 Blast hits to 16156 proteins in 1551 species: Archae - 2%3B Bacteria - 177%3B Metazoa - 9876%3B Fungi - 6429%3B Plants - 6014%3B Viruses - 0%3B Other Eukaryotes - 3910 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12372144, PMID:14617064, PMID:14595688, PMID:15347784, PMID:15489280, PMID:15720654, PMID:15539469, PMID:16023399, PMID:18650403, locus:2194105; locus_type=protein_coding
AT1G18210.2	chr1:006268273	0.0	C/6268273-6268785	AT1G18210.2 CDS AT1G18210 ID=AT1G18210.2; Parent=AT1G18210; Name=AT1G18210.2; Note=Calcium-binding EF-hand family protein; conf_class=2; computational_description=Calcium-binding EF-hand family protein%3B FUNCTIONS IN: calcium ion binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%2C vacuole%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: EF-Hand 1%2C calcium-binding site (InterPro:IPR018247)%2C EF-HAND 2 (InterPro:IPR018249)%2C EF-hand-like domain (InterPro:IPR011992)%2C Calcium-binding EF-hand (InterPro:IPR002048)%2C EF-hand (InterPro:IPR018248)%3B BEST Arabidopsis thaliana protein match is: EF hand calcium-binding protein family (TAIR:AT1G73630.1)%3B Has 26408 Blast hits to 16156 proteins in 1551 species: Archae - 2%3B Bacteria - 177%3B Metazoa - 9876%3B Fungi - 6429%3B Plants - 6014%3B Viruses - 0%3B Other Eukaryotes - 3910 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12372144, PMID:14617064, PMID:14595688, PMID:15347784, PMID:15489280, PMID:15720654, PMID:15539469, PMID:16023399, PMID:18650403, locus:2194105; locus_type=protein_coding
AT1G18220.1	chr1:006269670	0.0	C/6269670-6269807	AT1G18220.1 CDS AT1G18220 ID=AT1G18220.1; Parent=AT1G18220; Name=AT1G18220.1; Note=purine permease 9; curator_summary=Member of a family of proteins related to PUP1%2C a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins%2C across the plasma membrane.; conf_class=10; symbol=PUP9; Alias=ATPUP9, purine permease 9; full_name=purine permease 9; computational_description=purine permease 9 (PUP9)%3B Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).; Dbxref=PMID:10662864, PMID:16212609, PMID:16489130, locus:2194334; locus_type=protein_coding
AT1G05387.1	chr1:006269849	0.0	W/6269849-6270159	AT1G05387.1 lnc_RNA AT1G05387 ID=AT1G05387.1; Parent=AT1G05387; Name=AT1G05387.1; locus_type=long_noncoding_rna
AT1G05397.1	chr1:006271817	0.0	C/6271817-6272422	AT1G05397.1 lnc_RNA AT1G05397 ID=AT1G05397.1; Parent=AT1G05397; Name=AT1G05397.1; locus_type=long_noncoding_rna
AT1TE20310	chr1:006272450	0.0	C/6272450-6272600	AT1TE20310 transposable_element AT1TE20310 ID=AT1TE20310; Name=AT1TE20310; Alias=ATIS112A
AT1G18230.1	chr1:006272666	0.0	C/6272666-6273307	AT1G18230.1 pseudogenic_transcript AT1G18230 ID=AT1G18230.1; Parent=AT1G18230; Name=AT1G18230.1; index=1; Note=pseudogene; computational_description=pseudogene%2C putative protein kinase; Dbxref=locus:2826642, locus:2826642; locus_type=pseudogene
AT1TE20315	chr1:006273523	0.0	C/6273523-6273700,6274126-6274735,6274710-6275357,6275819-6276128	AT1TE20315 transposable_element AT1TE20315 ID=AT1TE20315; Name=AT1TE20315; Alias=TAG2
AT1TE20320	chr1:006273768	0.0	C/6273768-6273906	AT1TE20320 transposable_element AT1TE20320 ID=AT1TE20320; Name=AT1TE20320; Alias=TAG2
AT1TE20325	chr1:006273947	0.0	C/6273947-6274053	AT1TE20325 transposable_element AT1TE20325 ID=AT1TE20325; Name=AT1TE20325; Alias=TAG2
AT1G18240.1	chr1:006274286	0.0	C/6274286-6275594	AT1G18240.1 CDS AT1G18240 ID=AT1G18240.1; Parent=AT1G18240; Name=AT1G18240.1; index=1; computational_description=hAT-like transposase family (hobo/Ac/Tam3)%2C has a 1.2e-154 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana); Dbxref=locus:2826647; Note=transposable_element_gene; locus_type=transposable_element_gene
AT1G18250.1	chr1:006277024	0.0	C/6277024-6277372,6277452-6277776,6277948-6278005	AT1G18250.1 CDS AT1G18250 ID=AT1G18250.1; Parent=AT1G18250; Name=AT1G18250.1; Note=Pathogenesis-related thaumatin superfamily protein; curator_summary=encodes a thaumatin-like protein; conf_class=1; symbol=ATLP-1; computational_description=ATLP-1%3B INVOLVED IN: response to other organism%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 19 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Thaumatin%2C conserved site (InterPro:IPR017949)%2C Thaumatin%2C pathogenesis-related (InterPro:IPR001938)%3B BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT1G73620.1)%3B Has 1566 Blast hits to 1554 proteins in 172 species: Archae - 0%3B Bacteria - 23%3B Metazoa - 54%3B Fungi - 80%3B Plants - 1398%3B Viruses - 2%3B Other Eukaryotes - 9 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:9290646, PMID:7870835, PMID:12169696, PMID:16920880, PMID:18650403, PMID:20736450, PMID:22253603, locus:2194344; locus_type=protein_coding
AT1G18250.2	chr1:006277024	0.0	C/6277024-6277372,6277452-6277779,6277948-6278005	AT1G18250.2 CDS AT1G18250 ID=AT1G18250.2; Parent=AT1G18250; Name=AT1G18250.2; Note=Pathogenesis-related thaumatin superfamily protein; curator_summary=encodes a thaumatin-like protein; conf_class=3; symbol=ATLP-1; computational_description=ATLP-1%3B INVOLVED IN: response to other organism%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 19 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Thaumatin%2C conserved site (InterPro:IPR017949)%2C Thaumatin%2C pathogenesis-related (InterPro:IPR001938)%3B BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT1G73620.1)%3B Has 1566 Blast hits to 1554 proteins in 172 species: Archae - 0%3B Bacteria - 23%3B Metazoa - 54%3B Fungi - 80%3B Plants - 1398%3B Viruses - 2%3B Other Eukaryotes - 9 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9290646, PMID:7870835, PMID:12169696, PMID:16920880, PMID:18650403, PMID:20736450, PMID:22253603, locus:2194344; locus_type=protein_coding
AT1G18260.1	chr1:006279047	0.0	C/6279047-6279286,6279391-6279633,6279772-6280095,6280603-6280818,6280908-6281399,6281487-6282008	AT1G18260.1 CDS AT1G18260 ID=AT1G18260.1; Parent=AT1G18260; Name=AT1G18260.1; Note=HCP-like superfamily protein; curator_summary=Encodes an Arabidopsis homolog of the yeast Hrd3/mammlian Sel1L protein. Involved in ERAD (Endoplasmic reticulum-associated degradation).; conf_class=2; symbol=EBS5; Alias=HRD3A; full_name=EMS-mutagenized bri1 suppressor 5; computational_description=HCP-like superfamily protein%3B FUNCTIONS IN: binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endoplasmic reticulum%2C membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990)%2C Sel1-like (InterPro:IPR006597)%3B BEST Arabidopsis thaliana protein match is: HCP-like superfamily protein (TAIR:AT1G73570.1)%3B Has 24350 Blast hits to 8436 proteins in 1359 species: Archae - 0%3B Bacteria - 17163%3B Metazoa - 848%3B Fungi - 960%3B Plants - 547%3B Viruses - 27%3B Other Eukaryotes - 4805 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15978049, PMID:16618929, PMID:17432890, PMID:18650403, PMID:18775970, PMID:18849477, PMID:21187394, PMID:21187857, PMID:22516478, locus:2014109; locus_type=protein_coding
AT1G18265.1	chr1:006282338	0.0	C/6282338-6283180	AT1G18265.1 CDS AT1G18265 ID=AT1G18265.1; Parent=AT1G18265; Name=AT1G18265.1; Note=zein-binding protein (Protein of unknown function%2C DUF593); conf_class=1; computational_description=Protein of unknown function%2C DUF593%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF593 (InterPro:IPR007656)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function%2C DUF593 (TAIR:AT5G16720.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11152613, PMID:20736450, locus:1006230686; locus_type=protein_coding
AT1G18270.1	chr1:006283634	0.0	C/6283634-6283816,6283970-6284050,6284132-6284239,6284335-6284523,6284618-6284683,6284888-6284962,6285096-6285206,6285279-6285364,6285447-6285591,6285729-6285826,6285924-6286065,6286159-6286206,6286299-6286469,6286591-6286659,6286798-6286917,6287005-6287077,6287199-6287317,6287424-6287543,6287668-6287755,6287911-6288122,6288305-6288351,6288615-6288693,6288768-6288849,6289112-6289249,6289350-6289398,6289486-6289540,6289604-6289680,6289865-6289945,6290021-6290101,6290245-6290320,6290744-6290938,6291073-6291119,6291208-6291286,6291466-6291544,6291925-6292062,6292306-6292354,6292448-6292502,6292630-6292706,6292812-6292892,6292980-6293060,6293296-6293371,6293677-6293772	AT1G18270.1 CDS AT1G18270 ID=AT1G18270.1; Parent=AT1G18270; Name=AT1G18270.1; Note=ketose-bisphosphate aldolase class-II family protein; conf_class=3; computational_description=ketose-bisphosphate aldolase class-II family protein%3B FUNCTIONS IN: in 8 functions%3B INVOLVED IN: oxidation reduction%2C pentose-phosphate shunt%2C valine metabolic process%2C glycolysis%2C metabolic process%3B LOCATED IN: nucleus%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785)%2C 6-phosphogluconate dehydrogenase%2C NAD-binding (InterPro:IPR006115)%2C 6-phosphogluconate dehydrogenase%2C C-terminal-like (InterPro:IPR008927)%2C Dehydrogenase%2C multihelical (InterPro:IPR013328)%2C Ketose-bisphosphate aldolase%2C class-II (InterPro:IPR000771)%2C 3-hydroxyacid dehydrogenase/reductase (InterPro:IPR015815)%2C Protein of unknown function%2C DUF1537 (InterPro:IPR010737)%2C NAD(P)-binding domain (InterPro:IPR016040)%2C 3-hydroxyisobutyrate dehydrogenase-related%2C conserved site (InterPro:IPR002204)%3B BEST Arabidopsis thaliana protein match is: 6-phosphogluconate dehydrogenase family protein (TAIR:AT4G20930.1)%3B Has 34046 Blast hits to 22505 proteins in 2700 species: Archae - 264%3B Bacteria - 21742%3B Metazoa - 568%3B Fungi - 820%3B Plants - 423%3B Viruses - 1%3B Other Eukaryotes - 10228 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18315867, PMID:18650403, PMID:18616834, PMID:18805951, PMID:20736450, locus:2014094; locus_type=protein_coding
AT1G18270.2	chr1:006283634	0.0	C/6283634-6283816,6283970-6284050,6284132-6284239,6284335-6284523,6284618-6284683,6284888-6284962,6285096-6285206,6285279-6285364,6285447-6285591,6285729-6285826,6285924-6286065,6286159-6286206,6286299-6286469,6286591-6286659,6286798-6286917,6287005-6287077,6287199-6287317,6287424-6287543,6287668-6287755,6287911-6288122,6288305-6288351,6288615-6288693,6288768-6288849,6289112-6289249,6289350-6289398,6289486-6289540,6289604-6289680,6289865-6289945,6290021-6290101,6290245-6290320,6290744-6290938,6291073-6291119,6291208-6291286,6291466-6291544,6291925-6292062,6292306-6292354,6292448-6292502,6292630-6292706,6292812-6292892,6292980-6293063,6293296-6293371,6293677-6293772	AT1G18270.2 CDS AT1G18270 ID=AT1G18270.2; Parent=AT1G18270; Name=AT1G18270.2; Note=ketose-bisphosphate aldolase class-II family protein; conf_class=3; computational_description=ketose-bisphosphate aldolase class-II family protein%3B FUNCTIONS IN: in 8 functions%3B INVOLVED IN: oxidation reduction%2C pentose-phosphate shunt%2C valine metabolic process%2C glycolysis%2C metabolic process%3B LOCATED IN: nucleus%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785)%2C 6-phosphogluconate dehydrogenase%2C NAD-binding (InterPro:IPR006115)%2C 6-phosphogluconate dehydrogenase%2C C-terminal-like (InterPro:IPR008927)%2C Dehydrogenase%2C multihelical (InterPro:IPR013328)%2C Ketose-bisphosphate aldolase%2C class-II (InterPro:IPR000771)%2C 3-hydroxyacid dehydrogenase/reductase (InterPro:IPR015815)%2C Protein of unknown function%2C DUF1537 (InterPro:IPR010737)%2C NAD(P)-binding domain (InterPro:IPR016040)%2C 3-hydroxyisobutyrate dehydrogenase-related%2C conserved site (InterPro:IPR002204)%3B BEST Arabidopsis thaliana protein match is: 6-phosphogluconate dehydrogenase family protein (TAIR:AT4G20930.1)%3B Has 34046 Blast hits to 22505 proteins in 2700 species: Archae - 264%3B Bacteria - 21742%3B Metazoa - 568%3B Fungi - 820%3B Plants - 423%3B Viruses - 1%3B Other Eukaryotes - 10228 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18315867, PMID:18650403, PMID:18616834, PMID:18805951, PMID:20736450, locus:2014094; locus_type=protein_coding
AT1G18270.3	chr1:006283634	0.0	C/6283634-6283816,6283970-6284050,6284132-6284239,6284335-6284523,6284618-6284683,6284888-6284962,6285096-6285206,6285279-6285364,6285447-6285591,6285729-6285826,6285924-6286065,6286159-6286206,6286299-6286469,6286591-6286659,6286738-6286917,6287005-6287077,6287199-6287317,6287424-6287543,6287668-6287755,6287911-6288122,6288305-6288351,6288615-6288693,6288768-6288849,6289112-6289249,6289350-6289398,6289486-6289540,6289604-6289680,6289865-6289945,6290021-6290101,6290245-6290320,6290744-6290938,6291073-6291119,6291208-6291286,6291466-6291544,6291925-6292062,6292306-6292354,6292448-6292502,6292630-6292706,6292812-6292892,6292980-6293060,6293296-6293371,6293677-6293772	AT1G18270.3 CDS AT1G18270 ID=AT1G18270.3; Parent=AT1G18270; Name=AT1G18270.3; Note=ketose-bisphosphate aldolase class-II family protein; conf_class=6; computational_description=ketose-bisphosphate aldolase class-II family protein%3B FUNCTIONS IN: in 8 functions%3B INVOLVED IN: oxidation reduction%2C pentose-phosphate shunt%2C valine metabolic process%2C glycolysis%2C metabolic process%3B LOCATED IN: nucleus%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785)%2C 6-phosphogluconate dehydrogenase%2C NAD-binding (InterPro:IPR006115)%2C 6-phosphogluconate dehydrogenase%2C C-terminal-like (InterPro:IPR008927)%2C Dehydrogenase%2C multihelical (InterPro:IPR013328)%2C Ketose-bisphosphate aldolase%2C class-II (InterPro:IPR000771)%2C 3-hydroxyacid dehydrogenase/reductase (InterPro:IPR015815)%2C Protein of unknown function%2C DUF1537 (InterPro:IPR010737)%2C NAD(P)-binding domain (InterPro:IPR016040)%2C 3-hydroxyisobutyrate dehydrogenase-related%2C conserved site (InterPro:IPR002204)%3B BEST Arabidopsis thaliana protein match is: 6-phosphogluconate dehydrogenase family protein (TAIR:AT4G20930.1)%3B Has 34046 Blast hits to 22505 proteins in 2700 species: Archae - 264%3B Bacteria - 21742%3B Metazoa - 568%3B Fungi - 820%3B Plants - 423%3B Viruses - 1%3B Other Eukaryotes - 10228 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:18315867, PMID:18650403, PMID:18616834, PMID:18805951, PMID:20736450, locus:2014094; locus_type=protein_coding
AT1G18270.4	chr1:006283964	0.0	C/6283964-6284050,6284132-6284239,6284335-6284523,6284618-6284683,6284888-6284962,6285096-6285206,6285279-6285364,6285447-6285591,6285729-6285826,6285924-6286065,6286159-6286206,6286299-6286469,6286591-6286659,6286798-6286917,6287005-6287077,6287199-6287317,6287424-6287543,6287668-6287755,6287911-6288122,6288305-6288351,6288615-6288693,6288768-6288849,6289112-6289249,6289350-6289398,6289486-6289540,6289604-6289680,6289865-6289945,6290021-6290101,6290245-6290320,6290744-6290938,6291073-6291119,6291208-6291286,6291466-6291544,6291925-6292062,6292306-6292354,6292448-6292502,6292630-6292706,6292812-6292892,6292980-6293060,6293296-6293371,6293677-6293772	AT1G18270.4 CDS AT1G18270 ID=AT1G18270.4; Parent=AT1G18270; Name=AT1G18270.4; Note=ketose-bisphosphate aldolase class-II family protein; computational_description=ketose-bisphosphate aldolase class-II family protein%3B FUNCTIONS IN: in 8 functions%3B INVOLVED IN: oxidation reduction%2C pentose-phosphate shunt%2C valine metabolic process%2C glycolysis%2C metabolic process%3B LOCATED IN: nucleus%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785)%2C 6-phosphogluconate dehydrogenase%2C NAD-binding (InterPro:IPR006115)%2C 6-phosphogluconate dehydrogenase%2C C-terminal-like (InterPro:IPR008927)%2C Dehydrogenase%2C multihelical (InterPro:IPR013328)%2C Ketose-bisphosphate aldolase%2C class-II (InterPro:IPR000771)%2C 3-hydroxyacid dehydrogenase/reductase (InterPro:IPR015815)%2C Protein of unknown function%2C DUF1537 (InterPro:IPR010737)%2C NAD(P)-binding domain (InterPro:IPR016040)%2C 3-hydroxyisobutyrate dehydrogenase-related%2C conserved site (InterPro:IPR002204)%3B BEST Arabidopsis thaliana protein match is: 6-phosphogluconate dehydrogenase family protein (TAIR:AT4G20930.1)%3B Has 34046 Blast hits to 22505 proteins in 2700 species: Archae - 264%3B Bacteria - 21742%3B Metazoa - 568%3B Fungi - 820%3B Plants - 423%3B Viruses - 1%3B Other Eukaryotes - 10228 (source: NCBI BLink).; Dbxref=PMID:18315867, PMID:18650403, PMID:18616834, PMID:18805951, PMID:20736450, locus:2014094; locus_type=protein_coding
AT1G18280.1	chr1:006294403	0.0	W/6294403-6294754,6294875-6294940,6295083-6295207	AT1G18280.1 CDS AT1G18280 ID=AT1G18280.1; Parent=AT1G18280; Name=AT1G18280.1; Note=Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; conf_class=2; Alias=LTPG3, glycosylphosphatidylinositol-anchored lipid protein transfer 3; computational_description=Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein%3B CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140)%2C Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612)%3B BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT1G73560.1)%3B Has 517 Blast hits to 515 proteins in 27 species: Archae - 0%3B Bacteria - 3%3B Metazoa - 3%3B Fungi - 0%3B Plants - 507%3B Viruses - 0%3B Other Eukaryotes - 4 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12068095, PMID:12805588, PMID:14671020, PMID:16291648, PMID:18775970, PMID:23505340, PMID:24460633, PMID:23791732, locus:2014074; locus_type=protein_coding
AT1G18290.1	chr1:006297436	0.0	W/6297436-6297966	AT1G18290.1 CDS AT1G18290 ID=AT1G18290.1; Parent=AT1G18290; Name=AT1G18290.1; Note=DUF4228 domain protein; conf_class=1; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: N-terminal protein myristoylation%3B LOCATED IN: chloroplast%3B EXPRESSED IN: root%3B Has 94 Blast hits to 94 proteins in 12 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 94%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12912986, PMID:14576160, PMID:17562352, PMID:18650403, locus:2014174; locus_type=protein_coding
AT1G18300.1	chr1:006299841	0.0	W/6299841-6300031,6300367-6300799	AT1G18300.1 CDS AT1G18300 ID=AT1G18300.1; Parent=AT1G18300; Name=AT1G18300.1; Note=nudix hydrolase homolog 4; conf_class=2; symbol=NUDT4; Alias=atnudt4, nudix hydrolase homolog 4; full_name=nudix hydrolase homolog 4; computational_description=nudix hydrolase homolog 4 (NUDT4)%3B FUNCTIONS IN: hydrolase activity%3B LOCATED IN: cytosol%3B EXPRESSED IN: stem%2C root%2C leaf%3B CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797)%2C NUDIX hydrolase%2C conserved site (InterPro:IPR020084)%2C NUDIX hydrolase domain (InterPro:IPR000086)%3B BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 21 (TAIR:AT1G73540.1)%3B Has 1264 Blast hits to 1263 proteins in 383 species: Archae - 1%3B Bacteria - 506%3B Metazoa - 249%3B Fungi - 131%3B Plants - 237%3B Viruses - 0%3B Other Eukaryotes - 140 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15878881, PMID:17337630, PMID:18684332, PMID:20736450, locus:2014164; locus_type=protein_coding
AT1G18310.1	chr1:006301200	0.0	C/6301200-6301385,6301423-6301578,6301783-6302669,6303165-6303490,6303562-6303956	AT1G18310.1 CDS AT1G18310 ID=AT1G18310.1; Parent=AT1G18310; Name=AT1G18310.1; Note=glycosyl hydrolase family 81 protein; conf_class=6; computational_description=glycosyl hydrolase family 81 protein%3B FUNCTIONS IN: hydrolase activity%2C acting on glycosyl bonds%2C endo-1%2C3(4)-beta-glucanase activity%3B INVOLVED IN: cell wall macromolecule catabolic process%3B CONTAINS InterPro DOMAIN/s: Glycoside hydrolase%2C family 81 (InterPro:IPR005200)%3B BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 81 protein (TAIR:AT5G15870.1)%3B Has 441 Blast hits to 435 proteins in 142 species: Archae - 0%3B Bacteria - 86%3B Metazoa - 4%3B Fungi - 179%3B Plants - 58%3B Viruses - 0%3B Other Eukaryotes - 114 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:15923328, PMID:20736450, locus:2014149; locus_type=protein_coding
AT1TE20410	chr1:006302582	0.0	W/6302582-6303156	AT1TE20410 transposable_element AT1TE20410 ID=AT1TE20410; Name=AT1TE20410; Alias=ATCOPIA58
AT1G18320.1	chr1:006304472	0.0	W/6304472-6304550,6304916-6305106,6305217-6305289,6305446-6305531	AT1G18320.1 CDS AT1G18320 ID=AT1G18320.1; Parent=AT1G18320; Name=AT1G18320.1; Note=Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein; conf_class=1; computational_description=Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein%3B FUNCTIONS IN: protein transporter activity%2C P-P-bond-hydrolysis-driven protein transmembrane transporter activity%3B INVOLVED IN: protein transport%3B LOCATED IN: mitochondrial inner membrane%2C mitochondrial inner membrane presequence translocase complex%3B CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane translocase complex%2C subunit Tim17/22 (InterPro:IPR003397)%3B BEST Arabidopsis thaliana protein match is: Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (TAIR:AT3G10110.1)%3B Has 671 Blast hits to 671 proteins in 187 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 261%3B Fungi - 229%3B Plants - 123%3B Viruses - 0%3B Other Eukaryotes - 58 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15356332, PMID:15695462, PMID:15546358, locus:2014139; locus_type=protein_coding
AT1G18330.1	chr1:006306196	0.0	C/6306196-6306945,6307028-6307089,6307180-6307291,6307383-6307487,6307629-6307640	AT1G18330.1 CDS AT1G18330 ID=AT1G18330.1; Parent=AT1G18330; Name=AT1G18330.1; Note=Homeodomain-like superfamily protein; curator_summary=EARLY-PHYTOCHROME-RESPONSIVE1; conf_class=2; symbol=EPR1; Alias=RVE7, REVEILLE 7; full_name=EARLY-PHYTOCHROME-RESPONSIVE1; computational_description=EARLY-PHYTOCHROME-RESPONSIVE1 (EPR1)%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%2C Myb-like DNA-binding domain%2C SHAQKYF class (InterPro:IPR006447)%3B BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G10113.1)%3B Has 1461 Blast hits to 1443 proteins in 140 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 102%3B Fungi - 30%3B Plants - 1113%3B Viruses - 0%3B Other Eukaryotes - 216 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:14523250, PMID:16087178, PMID:16463103, PMID:16891401, PMID:17587236, PMID:19805390, PMID:21499259, PMID:23344714, PMID:24377444, locus:2014114; locus_type=protein_coding
AT1G18330.2	chr1:006306196	0.0	C/6306196-6306945,6307028-6307089,6307180-6307291,6307383-6307487,6307629-6307718	AT1G18330.2 CDS AT1G18330 ID=AT1G18330.2; Parent=AT1G18330; Name=AT1G18330.2; Note=Homeodomain-like superfamily protein; curator_summary=EARLY-PHYTOCHROME-RESPONSIVE1; conf_class=3; symbol=EPR1; Alias=RVE7, REVEILLE 7; full_name=EARLY-PHYTOCHROME-RESPONSIVE1; computational_description=EARLY-PHYTOCHROME-RESPONSIVE1 (EPR1)%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%2C Myb-like DNA-binding domain%2C SHAQKYF class (InterPro:IPR006447)%3B BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G10113.1)%3B Has 1461 Blast hits to 1443 proteins in 140 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 102%3B Fungi - 30%3B Plants - 1113%3B Viruses - 0%3B Other Eukaryotes - 216 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:14523250, PMID:16087178, PMID:16463103, PMID:16891401, PMID:17587236, PMID:19805390, PMID:21499259, PMID:23344714, PMID:24377444, locus:2014114; locus_type=protein_coding
AT1G18335.1	chr1:006309428	0.0	C/6309428-6309454,6309588-6309653,6309736-6309778,6309961-6310037,6310154-6310462,6310563-6310642,6311022-6311124,6311222-6311326	AT1G18335.1 CDS AT1G18335 ID=AT1G18335.1; Parent=AT1G18335; Name=AT1G18335.1; Note=Acyl-CoA N-acyltransferases (NAT) superfamily protein; conf_class=3; computational_description=Acyl-CoA N-acyltransferases (NAT) superfamily protein%3B FUNCTIONS IN: N-acetyltransferase activity%3B INVOLVED IN: metabolic process%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase%2C C-terminal (InterPro:IPR022610)%2C GCN5-related N-acetyltransferase (InterPro:IPR000182)%2C Acyl-CoA N-acyltransferase (InterPro:IPR016181)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:504956309; locus_type=protein_coding
AT1G18335.2	chr1:006309537	0.0	C/6309537-6309653,6309736-6309778,6309961-6310037,6310154-6310462,6310563-6310642,6311022-6311124,6311222-6311326	AT1G18335.2 CDS AT1G18335 ID=AT1G18335.2; Parent=AT1G18335; Name=AT1G18335.2; Note=Acyl-CoA N-acyltransferases (NAT) superfamily protein; computational_description=Acyl-CoA N-acyltransferases (NAT) superfamily protein%3B FUNCTIONS IN: N-acetyltransferase activity%3B INVOLVED IN: metabolic process%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase%2C C-terminal (InterPro:IPR022610)%2C GCN5-related N-acetyltransferase (InterPro:IPR000182)%2C Acyl-CoA N-acyltransferase (InterPro:IPR016181)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).; Dbxref=locus:504956309; locus_type=protein_coding
AT1G18335.3	chr1:006309537	0.0	C/6309537-6309653,6309736-6309778,6309961-6310037,6310154-6310462,6310563-6310642,6311022-6311124,6311222-6311326	AT1G18335.3 CDS AT1G18335 ID=AT1G18335.3; Parent=AT1G18335; Name=AT1G18335.3; Note=Acyl-CoA N-acyltransferases (NAT) superfamily protein; computational_description=Acyl-CoA N-acyltransferases (NAT) superfamily protein%3B FUNCTIONS IN: N-acetyltransferase activity%3B INVOLVED IN: metabolic process%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase%2C C-terminal (InterPro:IPR022610)%2C GCN5-related N-acetyltransferase (InterPro:IPR000182)%2C Acyl-CoA N-acyltransferase (InterPro:IPR016181)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).; Dbxref=locus:504956309; locus_type=protein_coding
AT1G18340.1	chr1:006311612	0.0	C/6311612-6311687,6311779-6311874,6311959-6312035,6312143-6312211,6312296-6312349,6312449-6312494,6312581-6312618,6312812-6312858,6313128-6313410,6313492-6313580,6313704-6313734	AT1G18340.1 CDS AT1G18340 ID=AT1G18340.1; Parent=AT1G18340; Name=AT1G18340.1; Note=basal transcription factor complex subunit-like protein; conf_class=1; computational_description=basal transcription factor complex subunit-related%3B FUNCTIONS IN: general RNA polymerase II transcription factor activity%3B INVOLVED IN: DNA repair%2C regulation of transcription%2C DNA-dependent%3B LOCATED IN: core TFIIH complex%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: Transcription factor Tfb4 (InterPro:IPR004600)%3B Has 359 Blast hits to 354 proteins in 179 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 118%3B Fungi - 143%3B Plants - 47%3B Viruses - 0%3B Other Eukaryotes - 51 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15645454, PMID:16377756, PMID:16504176, PMID:18315867, PMID:20736450, locus:2014124; locus_type=protein_coding
AT1TE20450	chr1:006314684	0.0	W/6314684-6315328	AT1TE20450 transposable_element AT1TE20450 ID=AT1TE20450; Name=AT1TE20450; Alias=ATREP4
AT1G18350.1	chr1:006315686	0.0	W/6315686-6316609	AT1G18350.1 CDS AT1G18350 ID=AT1G18350.1; Parent=AT1G18350; Name=AT1G18350.1; Note=MAP kinase kinase 7; curator_summary=MAP kinase kinase7. Member of plant mitogen-activated protein kinase kinase group D. Negative regulator of polar auxin transport. Overexpression leads to activation of basal and systemic acquired resistance.; conf_class=1; symbol=MKK7; Alias=ATMKK7, MAP kinase kinase 7, BUD1, BUSHY AND DWARF 1; full_name=MAP kinase kinase 7; computational_description=MAP kinase kinase 7 (MKK7)%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: MAP kinase kinase 9 (TAIR:AT1G73500.1)%3B Has 127926 Blast hits to 126631 proteins in 4862 species: Archae - 158%3B Bacteria - 14837%3B Metazoa - 47772%3B Fungi - 12215%3B Plants - 31900%3B Viruses - 488%3B Other Eukaryotes - 20556 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11875555, PMID:16377756, PMID:16427632, PMID:16537113, PMID:17435248, PMID:17933903, PMID:19704652, PMID:19897669, PMID:20226671, PMID:20826955, PMID:22995285, PMID:23263767, PMID:25172143, locus:2014099; locus_type=protein_coding
AT1G18360.1	chr1:006316996	0.0	C/6316996-6317397,6317487-6317579,6317654-6317743,6317839-6317903,6318004-6318074,6318158-6318196,6318816-6319204	AT1G18360.1 CDS AT1G18360 ID=AT1G18360.1; Parent=AT1G18360; Name=AT1G18360.1; Note=alpha/beta-Hydrolases superfamily protein; conf_class=2; computational_description=alpha/beta-Hydrolases superfamily protein%3B FUNCTIONS IN: hydrolase activity%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G73480.1)%3B Has 6456 Blast hits to 6448 proteins in 1759 species: Archae - 38%3B Bacteria - 4736%3B Metazoa - 147%3B Fungi - 149%3B Plants - 444%3B Viruses - 63%3B Other Eukaryotes - 879 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:16415209, PMID:18650403, PMID:23505340, locus:2014084; locus_type=protein_coding
AT1G18370.1	chr1:006319732	0.0	C/6319732-6320059,6320144-6320472,6320551-6321522,6321615-6321716,6321802-6321912,6322005-6322203,6322302-6322426,6322527-6322586,6322672-6322739,6322833-6322914,6323019-6323135,6323226-6323326,6323406-6323495,6323580-6323820	AT1G18370.1 CDS AT1G18370 ID=AT1G18370.1; Parent=AT1G18370; Name=AT1G18370.1; Note=ATP binding microtubule motor family protein; curator_summary=Encodes a kinesin HINKEL. Required for cytokinesis in pollen. Mutant has cytokinesis defects%3B seedling lethal.; conf_class=4; symbol=HIK; Alias=ATNACK1, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, NACK1, NPK1-ACTIVATING KINESIN 1; full_name=HINKEL; computational_description=HINKEL (HIK)%3B FUNCTIONS IN: microtubule motor activity%2C ATP binding%3B INVOLVED IN: response to cyclopentenone%2C cellularization of the embryo sac%2C gametophyte development%2C pollen development%2C cytokinesis%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3490 (InterPro:IPR021881)%2C Kinesin%2C motor region%2C conserved site (InterPro:IPR019821)%2C Kinesin%2C motor domain (InterPro:IPR001752)%3B BEST Arabidopsis thaliana protein match is: ATP binding microtubule motor family protein (TAIR:AT3G43210.1)%3B Has 14045 Blast hits to 12964 proteins in 525 species: Archae - 35%3B Bacteria - 375%3B Metazoa - 6535%3B Fungi - 1633%3B Plants - 1984%3B Viruses - 5%3B Other Eukaryotes - 3478 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:14576160, PMID:15569152, PMID:16448571, PMID:16530461, PMID:17329565, PMID:18334669, PMID:18775970, PMID:19825582, PMID:20802223, PMID:21455028, PMID:22006334, PMID:23027702, PMID:23451828, PMID:25502072, locus:2014069; locus_type=protein_coding
AT1G18382.1	chr1:006325873	0.0	C/6325873-6326732	AT1G18382.1 antisense_lncRNA AT1G18382 ID=AT1G18382.1; Parent=AT1G18382; curator_summary=Potential natural antisense gene%2C locus overlaps with AT1G18380; Dbxref=PMID:25533478, locus:4515102544; Name=AT1G18382.1; description=Natural antisense transcript overlaps with AT1G18380; Note=Natural antisense transcript overlaps with AT1G18380; locus_type=antisense_long_noncoding_rna
AT1G18390.1	chr1:006325876	0.0	W/6325876-6326623,6328429-6328473,6328682-6329319,6329420-6329935	AT1G18390.1 CDS AT1G18390 ID=AT1G18390.1; Parent=AT1G18390; Name=AT1G18390.1; Note=Serine/Threonine kinase family catalytic domain protein; conf_class=2; Alias=LRK10L1.1, Leaf rust 10 disease-resistance locus receptor- like protein kinase-like 1.1, LRK10L1.2, Leaf rust 10 disease-resistance locus receptor- like protein kinase-like 1.2; computational_description=Protein kinase superfamily protein%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G66880.1)%3B Has 21064 Blast hits to 20752 proteins in 1151 species: Archae - 24%3B Bacteria - 3918%3B Metazoa - 5271%3B Fungi - 1719%3B Plants - 7999%3B Viruses - 19%3B Other Eukaryotes - 2114 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12805585, PMID:16432629, PMID:16507082, PMID:18408043, PMID:18650403, PMID:20736450, PMID:25533478, PMID:25510357, locus:2014154; locus_type=protein_coding
AT1G18390.2	chr1:006327463	0.0	W/6327463-6328219,6328429-6328463,6328663-6329319,6329420-6329935	AT1G18390.2 CDS AT1G18390 ID=AT1G18390.2; Parent=AT1G18390; Name=AT1G18390.2; Note=Serine/Threonine kinase family catalytic domain protein; conf_class=6; Alias=LRK10L1.1, Leaf rust 10 disease-resistance locus receptor- like protein kinase-like 1.1, LRK10L1.2, Leaf rust 10 disease-resistance locus receptor- like protein kinase-like 1.2; computational_description=Protein kinase superfamily protein%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G66880.1)%3B Has 21064 Blast hits to 20752 proteins in 1151 species: Archae - 24%3B Bacteria - 3918%3B Metazoa - 5271%3B Fungi - 1719%3B Plants - 7999%3B Viruses - 19%3B Other Eukaryotes - 2114 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:12805585, PMID:16432629, PMID:16507082, PMID:18408043, PMID:18650403, PMID:20736450, PMID:25533478, PMID:25510357, locus:2014154; locus_type=protein_coding
AT1G18400.1	chr1:006331464	0.0	W/6331464-6331820,6331924-6332049,6332151-6332216,6332647-6332715,6333000-6333077,6333490-6333576	AT1G18400.1 CDS AT1G18400 ID=AT1G18400.1; Parent=AT1G18400; Name=AT1G18400.1; Note=BR enhanced expression 1; curator_summary=Encodes the brassinosteroid signaling component BEE1 (BR-ENHANCED EXPRESSION 1). Positively modulates the shade avoidance syndrome in Arabidopsis seedlings.; conf_class=1; symbol=BEE1; full_name=BR enhanced expression 1; computational_description=BR enhanced expression 1 (BEE1)%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: BR enhanced expression 3 (TAIR:AT1G73830.1)%3B Has 2046 Blast hits to 2038 proteins in 98 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 6%3B Fungi - 35%3B Plants - 1999%3B Viruses - 0%3B Other Eukaryotes - 6 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11118137, PMID:12679534, PMID:12897250, PMID:14600211, PMID:14730066, PMID:15328536, PMID:15680330, PMID:16121258, PMID:16214899, PMID:16432629, PMID:16507082, PMID:16813576, PMID:17905899, PMID:20736450, PMID:21336258, PMID:21693516, PMID:23763263, locus:2014144; locus_type=protein_coding
AT1G18400.2	chr1:006331464	0.0	W/6331464-6331820,6331924-6332049,6332151-6332216,6332647-6332715,6333000-6333119	AT1G18400.2 CDS AT1G18400 ID=AT1G18400.2; Parent=AT1G18400; Name=AT1G18400.2; Note=BR enhanced expression 1; symbol=BEE1; full_name=BR enhanced expression 1; curator_summary=Encodes the brassinosteroid signaling component BEE1 (BR-ENHANCED EXPRESSION 1). Positively modulates the shade avoidance syndrome in Arabidopsis seedlings.; computational_description=BR enhanced expression 1 (BEE1)%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: BR enhanced expression 3 (TAIR:AT1G73830.1)%3B Has 2046 Blast hits to 2038 proteins in 98 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 6%3B Fungi - 35%3B Plants - 1999%3B Viruses - 0%3B Other Eukaryotes - 6 (source: NCBI BLink).; Dbxref=PMID:11118137, PMID:12679534, PMID:12897250, PMID:14600211, PMID:14730066, PMID:15328536, PMID:15680330, PMID:16121258, PMID:16214899, PMID:16432629, PMID:16507082, PMID:16813576, PMID:17905899, PMID:20736450, PMID:21336258, PMID:21693516, PMID:23763263, locus:2014144; locus_type=protein_coding
AT1G18410.1	chr1:006336528	0.0	C/6336528-6336604,6336717-6336835,6336927-6337252,6337344-6337507,6337589-6337842,6337964-6338123,6338281-6338440,6338525-6338631,6338752-6338931,6339012-6339103,6339207-6339292,6339369-6340088,6340297-6340389,6340463-6340540,6340669-6340752,6340895-6341022,6341106-6341228,6341540-6341600,6341665-6341730,6342101-6342460	AT1G18410.1 CDS AT1G18410 ID=AT1G18410.1; Parent=AT1G18410; Name=AT1G18410.1; Note=P-loop containing nucleoside triphosphate hydrolases superfamily protein; conf_class=6; computational_description=P-loop containing nucleoside triphosphate hydrolases superfamily protein%3B FUNCTIONS IN: microtubule motor activity%2C ATP binding%3B INVOLVED IN: microtubule-based movement%3B EXPRESSED IN: male gametophyte%2C flower%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%3B CONTAINS InterPro DOMAIN/s: Kinesin%2C motor domain (InterPro:IPR001752)%3B BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G73860.1)%3B Has 112609 Blast hits to 62495 proteins in 2699 species: Archae - 1262%3B Bacteria - 14877%3B Metazoa - 53219%3B Fungi - 10109%3B Plants - 7005%3B Viruses - 364%3B Other Eukaryotes - 25773 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:16432629, PMID:16720694, PMID:20736450, PMID:21284606, locus:2014129; locus_type=protein_coding
AT1G18410.2	chr1:006336528	0.0	C/6336528-6336604,6336717-6336835,6336927-6337252,6337344-6337507,6337589-6337842,6337964-6338128,6338262-6338440,6338525-6338631,6338752-6338931,6339012-6339107,6339211-6339292,6339369-6340088,6340196-6340225,6340297-6340389,6340463-6340540,6340669-6340752,6340895-6341022,6341106-6341256	AT1G18410.2 CDS AT1G18410 ID=AT1G18410.2; Parent=AT1G18410; Name=AT1G18410.2; Note=P-loop containing nucleoside triphosphate hydrolases superfamily protein; computational_description=P-loop containing nucleoside triphosphate hydrolases superfamily protein%3B FUNCTIONS IN: microtubule motor activity%2C ATP binding%3B INVOLVED IN: microtubule-based movement%3B EXPRESSED IN: male gametophyte%2C flower%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%3B CONTAINS InterPro DOMAIN/s: Kinesin%2C motor domain (InterPro:IPR001752)%3B BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G73860.1)%3B Has 112609 Blast hits to 62495 proteins in 2699 species: Archae - 1262%3B Bacteria - 14877%3B Metazoa - 53219%3B Fungi - 10109%3B Plants - 7005%3B Viruses - 364%3B Other Eukaryotes - 25773 (source: NCBI BLink).; Dbxref=PMID:16432629, PMID:16720694, PMID:20736450, PMID:21284606, locus:2014129; locus_type=protein_coding
AT1G18410.3	chr1:006336528	0.0	C/6336528-6336604,6336717-6336835,6336927-6337252,6337344-6337507,6337589-6337842,6337964-6338128,6338262-6338440,6338525-6338631,6338752-6338931,6339012-6339107,6339211-6339292,6339369-6340088,6340196-6340225,6340297-6340389,6340463-6340540,6340669-6340752,6340895-6341022,6341106-6341256	AT1G18410.3 CDS AT1G18410 ID=AT1G18410.3; Parent=AT1G18410; Name=AT1G18410.3; Note=P-loop containing nucleoside triphosphate hydrolases superfamily protein; computational_description=P-loop containing nucleoside triphosphate hydrolases superfamily protein%3B FUNCTIONS IN: microtubule motor activity%2C ATP binding%3B INVOLVED IN: microtubule-based movement%3B EXPRESSED IN: male gametophyte%2C flower%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%3B CONTAINS InterPro DOMAIN/s: Kinesin%2C motor domain (InterPro:IPR001752)%3B BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G73860.1)%3B Has 112609 Blast hits to 62495 proteins in 2699 species: Archae - 1262%3B Bacteria - 14877%3B Metazoa - 53219%3B Fungi - 10109%3B Plants - 7005%3B Viruses - 364%3B Other Eukaryotes - 25773 (source: NCBI BLink).; Dbxref=PMID:16432629, PMID:16720694, PMID:20736450, PMID:21284606, locus:2014129; locus_type=protein_coding
AT1G18410.4	chr1:006336528	0.0	C/6336528-6336604,6336717-6336835,6336927-6337252,6337344-6337507,6337589-6337842,6337964-6338128,6338262-6338440,6338525-6338631,6338752-6338931,6339012-6339107,6339211-6339292,6339369-6340088,6340297-6340389,6340463-6340540,6340669-6340752,6340895-6341022,6341106-6341228,6341540-6341600,6341665-6341730,6342101-6342460	AT1G18410.4 CDS AT1G18410 ID=AT1G18410.4; Parent=AT1G18410; Name=AT1G18410.4; Note=P-loop containing nucleoside triphosphate hydrolases superfamily protein; computational_description=P-loop containing nucleoside triphosphate hydrolases superfamily protein%3B FUNCTIONS IN: microtubule motor activity%2C ATP binding%3B INVOLVED IN: microtubule-based movement%3B EXPRESSED IN: male gametophyte%2C flower%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%3B CONTAINS InterPro DOMAIN/s: Kinesin%2C motor domain (InterPro:IPR001752)%3B BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G73860.1)%3B Has 112609 Blast hits to 62495 proteins in 2699 species: Archae - 1262%3B Bacteria - 14877%3B Metazoa - 53219%3B Fungi - 10109%3B Plants - 7005%3B Viruses - 364%3B Other Eukaryotes - 25773 (source: NCBI BLink).; Dbxref=PMID:16432629, PMID:16720694, PMID:20736450, PMID:21284606, locus:2014129; locus_type=protein_coding
AT1G18410.5	chr1:006336528	0.0	C/6336528-6336604,6336717-6336835,6336927-6337237,6337344-6337507,6337589-6337842,6337964-6338123,6338281-6338440,6338525-6338631,6338752-6338931,6339012-6339103,6339207-6339292,6339369-6340088,6340297-6340389,6340463-6340540,6340669-6340752,6340895-6341022,6341106-6341256	AT1G18410.5 CDS AT1G18410 ID=AT1G18410.5; Parent=AT1G18410; Name=AT1G18410.5; Note=P-loop containing nucleoside triphosphate hydrolases superfamily protein; computational_description=P-loop containing nucleoside triphosphate hydrolases superfamily protein%3B FUNCTIONS IN: microtubule motor activity%2C ATP binding%3B INVOLVED IN: microtubule-based movement%3B EXPRESSED IN: male gametophyte%2C flower%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%3B CONTAINS InterPro DOMAIN/s: Kinesin%2C motor domain (InterPro:IPR001752)%3B BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G73860.1)%3B Has 112609 Blast hits to 62495 proteins in 2699 species: Archae - 1262%3B Bacteria - 14877%3B Metazoa - 53219%3B Fungi - 10109%3B Plants - 7005%3B Viruses - 364%3B Other Eukaryotes - 25773 (source: NCBI BLink).; Dbxref=PMID:16432629, PMID:16720694, PMID:20736450, PMID:21284606, locus:2014129; locus_type=protein_coding
AT1G18415.1	chr1:006342940	0.0	C/6342940-6345787	AT1G18415.1 antisense_lncRNA AT1G18415 ID=AT1G18415.1; Parent=AT1G18415; curator_summary=Potential natural antisense gene%2C locus overlaps with AT1G18420; Dbxref=locus:4010713450; Name=AT1G18415.1; description=Natural antisense transcript overlaps with AT1G18420; Note=Natural antisense transcript overlaps with AT1G18420; locus_type=antisense_long_noncoding_rna
AT1G18415.2	chr1:006342940	0.0	C/6342940-6345787	AT1G18415.2 antisense_lncRNA AT1G18415 ID=AT1G18415.2; Parent=AT1G18415; Name=AT1G18415.2; description=Natural antisense transcript overlaps with AT1G18420; curator_summary=Potential natural antisense gene%2C locus overlaps with AT1G18420; Note=Natural antisense transcript overlaps with AT1G18420; Dbxref=locus:4010713450; locus_type=antisense_long_noncoding_rna
AT1G18420.1	chr1:006343330	0.0	W/6343330-6343511,6343666-6343895,6343983-6344120,6344215-6344484,6344576-6344715,6344817-6344963,6345051-6345689	AT1G18420.1 CDS AT1G18420 ID=AT1G18420.1; Parent=AT1G18420; Name=AT1G18420.1; Note=aluminum activated malate transporter family protein; conf_class=6; computational_description=Aluminium activated malate transporter family protein%3B INVOLVED IN: response to aluminum ion%3B CONTAINS InterPro DOMAIN/s: Malate transporter%2C aliminium toerance (InterPro:IPR020966)%3B BEST Arabidopsis thaliana protein match is: aluminum-activated malate transporter 9 (TAIR:AT3G18440.1)%3B Has 539 Blast hits to 535 proteins in 118 species: Archae - 0%3B Bacteria - 174%3B Metazoa - 1%3B Fungi - 11%3B Plants - 341%3B Viruses - 0%3B Other Eukaryotes - 12 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:16432629, locus:2014119; locus_type=protein_coding
AT1G18420.2	chr1:006343733	0.0	W/6343733-6343895,6343983-6344120,6344215-6344484,6344576-6344715,6344817-6344963,6345051-6345689	AT1G18420.2 CDS AT1G18420 ID=AT1G18420.2; Parent=AT1G18420; Name=AT1G18420.2; Note=aluminum activated malate transporter family protein; computational_description=Aluminium activated malate transporter family protein%3B INVOLVED IN: response to aluminum ion%3B CONTAINS InterPro DOMAIN/s: Malate transporter%2C aliminium toerance (InterPro:IPR020966)%3B BEST Arabidopsis thaliana protein match is: aluminum-activated malate transporter 9 (TAIR:AT3G18440.1)%3B Has 539 Blast hits to 535 proteins in 118 species: Archae - 0%3B Bacteria - 174%3B Metazoa - 1%3B Fungi - 11%3B Plants - 341%3B Viruses - 0%3B Other Eukaryotes - 12 (source: NCBI BLink).; Dbxref=PMID:16432629, locus:2014119; locus_type=protein_coding
AT1G18430.1	chr1:006345764	0.0	W/6345764-6345835	AT1G18430.1 tRNA AT1G18430 ID=AT1G18430.1; Parent=AT1G18430; Note=tRNA-Asp; computational_description=tRNA-Asp (anticodon: GTC); Dbxref=PMID:8980477, PMID:16432629, PMID:23066098, PMID:8980477, PMID:16432629, locus:3687548; Name=AT1G18430.1; locus_type=pre_trna
AT1G18440.1	chr1:006345994	0.0	W/6345994-6346332,6346403-6346487,6346709-6346776,6346890-6346940,6347026-6347099,6347279-6347337,6347421-6347497,6347573-6347686	AT1G18440.1 CDS AT1G18440 ID=AT1G18440.1; Parent=AT1G18440; Name=AT1G18440.1; Note=Peptidyl-tRNA hydrolase family protein; conf_class=2; computational_description=Peptidyl-tRNA hydrolase family protein%3B FUNCTIONS IN: aminoacyl-tRNA hydrolase activity%3B INVOLVED IN: translation%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidyl-tRNA hydrolase%2C conserved site (InterPro:IPR018171)%2C Peptidyl-tRNA hydrolase (InterPro:IPR001328)%3B BEST Arabidopsis thaliana protein match is: Peptidyl-tRNA hydrolase family protein (TAIR:AT5G16140.2)%3B Has 8043 Blast hits to 8040 proteins in 2597 species: Archae - 0%3B Bacteria - 5299%3B Metazoa - 47%3B Fungi - 102%3B Plants - 126%3B Viruses - 0%3B Other Eukaryotes - 2469 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:16432629, PMID:18650403, locus:2014134; locus_type=protein_coding
AT1G18440.2	chr1:006345994	0.0	W/6345994-6346332,6346403-6346487,6346709-6346776,6346890-6346940,6347026-6347154	AT1G18440.2 CDS AT1G18440 ID=AT1G18440.2; Parent=AT1G18440; Name=AT1G18440.2; Note=Peptidyl-tRNA hydrolase family protein; computational_description=Peptidyl-tRNA hydrolase family protein%3B FUNCTIONS IN: aminoacyl-tRNA hydrolase activity%3B INVOLVED IN: translation%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidyl-tRNA hydrolase%2C conserved site (InterPro:IPR018171)%2C Peptidyl-tRNA hydrolase (InterPro:IPR001328)%3B BEST Arabidopsis thaliana protein match is: Peptidyl-tRNA hydrolase family protein (TAIR:AT5G16140.2)%3B Has 8043 Blast hits to 8040 proteins in 2597 species: Archae - 0%3B Bacteria - 5299%3B Metazoa - 47%3B Fungi - 102%3B Plants - 126%3B Viruses - 0%3B Other Eukaryotes - 2469 (source: NCBI BLink).; Dbxref=PMID:14576160, PMID:16432629, PMID:18650403, locus:2014134; locus_type=protein_coding
AT1G18450.1	chr1:006348199	0.0	W/6348199-6348211,6348301-6348392,6348508-6348672,6348750-6348823,6348899-6348979,6349070-6349130,6349268-6349317,6349460-6349514,6349720-6349797,6349875-6349928,6350003-6350056,6350126-6350186,6350342-6350393,6350742-6350808,6350934-6350996,6351081-6351143,6351240-6351302,6351398-6351462,6351551-6351619,6351721-6351766	AT1G18450.1 CDS AT1G18450 ID=AT1G18450.1; Parent=AT1G18450; Name=AT1G18450.1; Note=actin-related protein 4; curator_summary=Encodes a gene similar to actin-related proteins in other organisms. Member of nuclear ARP family of genes. Component of chromatin remodeling complexes%2C involved in chromatin-mediated gene regulation. Phenotype of the arp4-1 mutant allele revealed partial sterility due to defects in anther development. Targeting the distinct%2C 3' UTR of AtARP4 transcripts with RNA interference caused a drastic reduction in the level of AtARP4 protein expression%2C and resulted in strong pleiotropic phenotypes such as altered organization of plant organs%2C early flowering%2C delayed flower senescence and high levels of sterility. Western blot analysis and immunolabelling demonstrated a clear correlation between reductions in the level of AtARP4 expression and severity of the phenotypes.; conf_class=2; symbol=ARP4; Alias=ATARP4, actin-related protein 4; full_name=actin-related protein 4; computational_description=actin-related protein 4 (ARP4)%3B FUNCTIONS IN: structural constituent of cytoskeleton%3B INVOLVED IN: long-day photoperiodism%2C flowering%2C chromatin organization%2C pollen sperm cell differentiation%3B LOCATED IN: nucleolus%2C nucleus%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Actin/actin-like (InterPro:IPR004000)%3B BEST Arabidopsis thaliana protein match is: actin-11 (TAIR:AT3G12110.1)%3B Has 13669 Blast hits to 13362 proteins in 2792 species: Archae - 2%3B Bacteria - 480%3B Metazoa - 5593%3B Fungi - 3430%3B Plants - 1457%3B Viruses - 2%3B Other Eukaryotes - 2705 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10561069, PMID:11891255, PMID:12609034, PMID:15659634, PMID:15653407, PMID:15743449, PMID:15063870, PMID:19679120, PMID:21228632, locus:2014104; locus_type=protein_coding
AT1G18460.1	chr1:006352682	0.0	W/6352682-6352722,6353292-6353465,6353554-6353959,6354039-6354322,6354429-6354497,6354588-6354644,6354725-6354777,6354870-6354945,6355026-6355971	AT1G18460.1 CDS AT1G18460 ID=AT1G18460.1; Parent=AT1G18460; Name=AT1G18460.1; Note=alpha/beta-Hydrolases superfamily protein; conf_class=2; computational_description=alpha/beta-Hydrolases superfamily protein%3B FUNCTIONS IN: lipase activity%3B INVOLVED IN: glycerol biosynthetic process%2C lipid metabolic process%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: AB-hydrolase-associated lipase region (InterPro:IPR006693)%3B BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G73920.1)%3B Has 1698 Blast hits to 1679 proteins in 187 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1170%3B Fungi - 262%3B Plants - 165%3B Viruses - 0%3B Other Eukaryotes - 101 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14701923, PMID:15235117, PMID:16432629, PMID:17031512, PMID:18218973, PMID:18650403, locus:2014159; locus_type=protein_coding
AT1G18470.1	chr1:006356407	0.0	C/6356407-6356485,6356676-6356755,6356855-6356935,6357080-6357149,6357237-6357311,6357402-6357607,6357685-6357934,6358046-6358091,6358232-6358301,6358626-6358695,6358782-6358866,6359159-6359243,6359344-6359434,6359942-6360057	AT1G18470.1 CDS AT1G18470 ID=AT1G18470.1; Parent=AT1G18470; Name=AT1G18470.1; Note=Transmembrane Fragile-X-F-associated protein; conf_class=2; computational_description=Transmembrane Fragile-X-F-associated protein%3B FUNCTIONS IN: zinc ion binding%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Transmembrane Fragile-X-F-associated protein (InterPro:IPR019396)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%3B BEST Arabidopsis thaliana protein match is: Transmembrane Fragile-X-F-associated protein (TAIR:AT1G73950.1)%3B Has 2617 Blast hits to 2612 proteins in 233 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1517%3B Fungi - 24%3B Plants - 500%3B Viruses - 234%3B Other Eukaryotes - 342 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16432629, PMID:18650403, PMID:18775970, locus:2014089; locus_type=protein_coding
AT1G18470.2	chr1:006356972	0.0	C/6356972-6357149,6357237-6357311,6357402-6357607,6357685-6357934,6358046-6358091,6358232-6358301,6358626-6358695,6358782-6358866,6359159-6359243,6359344-6359434,6359942-6360057	AT1G18470.2 CDS AT1G18470 ID=AT1G18470.2; Parent=AT1G18470; Name=AT1G18470.2; Note=Transmembrane Fragile-X-F-associated protein; conf_class=1; computational_description=Transmembrane Fragile-X-F-associated protein%3B FUNCTIONS IN: zinc ion binding%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Transmembrane Fragile-X-F-associated protein (InterPro:IPR019396)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%3B BEST Arabidopsis thaliana protein match is: Transmembrane Fragile-X-F-associated protein (TAIR:AT1G73950.1)%3B Has 2617 Blast hits to 2612 proteins in 233 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1517%3B Fungi - 24%3B Plants - 500%3B Viruses - 234%3B Other Eukaryotes - 342 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16432629, PMID:18650403, PMID:18775970, locus:2014089; locus_type=protein_coding
AT1G18480.1	chr1:006361639	0.0	W/6361639-6362814	AT1G18480.1 CDS AT1G18480 ID=AT1G18480.1; Parent=AT1G18480; Name=AT1G18480.1; Note=Calcineurin-like metallo-phosphoesterase superfamily protein; conf_class=1; symbol=SLP2; Alias=AtSLP2; full_name=Shewenella-like protein phosphatase 2; computational_description=Calcineurin-like metallo-phosphoesterase superfamily protein%3B FUNCTIONS IN: hydrolase activity%2C protein serine/threonine phosphatase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843)%3B BEST Arabidopsis thaliana protein match is: Calcineurin-like metallo-phosphoesterase superfamily protein (TAIR:AT1G07010.1)%3B Has 638 Blast hits to 634 proteins in 194 species: Archae - 15%3B Bacteria - 274%3B Metazoa - 0%3B Fungi - 21%3B Plants - 102%3B Viruses - 3%3B Other Eukaryotes - 223 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16432629, PMID:18156295, PMID:18775970, PMID:20736450, PMID:21960277, PMID:21976480, locus:2014079; locus_type=protein_coding
AT1G18485.1	chr1:006363172	0.0	W/6363172-6366084	AT1G18485.1 CDS AT1G18485 ID=AT1G18485.1; Parent=AT1G18485; Name=AT1G18485.1; Note=Pentatricopeptide repeat (PPR) superfamily protein; conf_class=1; computational_description=Pentatricopeptide repeat (PPR) superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57430.1)%3B Has 47794 Blast hits to 13382 proteins in 245 species: Archae - 0%3B Bacteria - 5%3B Metazoa - 44%3B Fungi - 66%3B Plants - 47218%3B Viruses - 0%3B Other Eukaryotes - 461 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16432629, locus:505006130; locus_type=protein_coding
AT1G18486.1	chr1:006366397	0.0	W/6366397-6366753	AT1G18486.1 CDS AT1G18486 ID=AT1G18486.1; Parent=AT1G18486; Name=AT1G18486.1; Note=transmembrane protein; conf_class=1; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02655.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:4515102545; locus_type=protein_coding
AT1G18490.1	chr1:006367116	0.0	W/6367116-6367311,6367735-6367886,6367971-6368139,6368218-6368418,6368510-6368640	AT1G18490.1 CDS AT1G18490 ID=AT1G18490.1; Parent=AT1G18490; Name=AT1G18490.1; Note=2-aminoethanethiol dioxygenase%2C putative (DUF1637); conf_class=2; Alias=PCO3, plant cysteine oxidase 3; computational_description=Protein of unknown function (DUF1637)%3B FUNCTIONS IN: cysteamine dioxygenase activity%3B INVOLVED IN: oxidation reduction%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1637 (InterPro:IPR012864)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1637) (TAIR:AT5G39890.1)%3B Has 360 Blast hits to 360 proteins in 93 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 102%3B Fungi - 0%3B Plants - 224%3B Viruses - 0%3B Other Eukaryotes - 34 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16244144, PMID:16432629, PMID:18178671, PMID:18978034, PMID:24599061, locus:2014169; locus_type=protein_coding
AT1G18500.1	chr1:006369347	0.0	W/6369347-6370059,6370150-6370363,6370463-6370543,6370888-6370980,6371099-6371185,6371289-6371389,6371612-6371645,6371733-6371807,6372069-6372152,6372243-6372377,6372462-6372607,6372729-6372861	AT1G18500.1 CDS AT1G18500 ID=AT1G18500.1; Parent=AT1G18500; Name=AT1G18500.1; Note=methylthioalkylmalate synthase-like 4; curator_summary=Encodes an active Arabidopsis isopropylmalate synthase IPMS1. Involved in leucine biosynthesis. Do not participate in the chain elongation of glucosinolates. Expressed constitutively throughout the plant. Loss of IPMS1 can be compensated by a second isopropylmalate synthase gene IPMS2 (At1g74040).; conf_class=2; symbol=MAML-4; Alias=IPMS1, ISOPROPYLMALATE SYNTHASE 1; full_name=methylthioalkylmalate synthase-like 4; computational_description=methylthioalkylmalate synthase-like 4 (MAML-4)%3B FUNCTIONS IN: 2-isopropylmalate synthase activity%3B INVOLVED IN: leucine biosynthetic process%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785)%2C Alpha-isopropylmalate/homocitrate synthase%2C conserved site (InterPro:IPR002034)%2C 2-isopropylmalate synthase LeuA%2C allosteric (dimerisation) domain (InterPro:IPR013709)%2C Pyruvate carboxyltransferase (InterPro:IPR000891)%2C Bacterial 2-isopropylmalate synthase (InterPro:IPR005671)%3B BEST Arabidopsis thaliana protein match is: 2-isopropylmalate synthase 1 (TAIR:AT1G74040.1)%3B Has 16947 Blast hits to 16939 proteins in 2437 species: Archae - 505%3B Bacteria - 8907%3B Metazoa - 233%3B Fungi - 482%3B Plants - 265%3B Viruses - 0%3B Other Eukaryotes - 6555 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:14740211, PMID:15361541, PMID:16432629, PMID:16702431, PMID:16649108, PMID:17056707, PMID:17189332, PMID:17369439, PMID:18162591, PMID:18375600, PMID:20736450, locus:2014179; locus_type=protein_coding
AT1G18510.1	chr1:006373265	0.0	W/6373265-6373711,6373791-6374090	AT1G18510.1 CDS AT1G18510 ID=AT1G18510.1; Parent=AT1G18510; Name=AT1G18510.1; Note=tetraspanin; curator_summary=Member of TETRASPANIN family; conf_class=1; symbol=TET16; full_name=tetraspanin 16; computational_description=tetraspanin 16 (TET16)%3B BEST Arabidopsis thaliana protein match is: tetraspanin 17 (TAIR:AT1G74045.1)%3B Has 136 Blast hits to 136 proteins in 18 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 136%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16432629, PMID:16531491, PMID:18775970, locus:2014064; locus_type=protein_coding
AT1G18520.1	chr1:006375051	0.0	W/6375051-6375557,6375870-6376178	AT1G18520.1 CDS AT1G18520 ID=AT1G18520.1; Parent=AT1G18520; Name=AT1G18520.1; Note=tetraspanin11; curator_summary=Member of TETRASPANIN family; conf_class=1; symbol=TET11; full_name=tetraspanin11; computational_description=tetraspanin11 (TET11)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: aging%3B LOCATED IN: endomembrane system%2C integral to membrane%3B EXPRESSED IN: 7 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499)%3B BEST Arabidopsis thaliana protein match is: tetraspanin8 (TAIR:AT2G23810.1)%3B Has 423 Blast hits to 421 proteins in 24 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2%3B Fungi - 0%3B Plants - 419%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16531491, PMID:16607029, PMID:18775970, locus:2014054; locus_type=protein_coding
AT1G18530.1	chr1:006376783	0.0	W/6376783-6377256	AT1G18530.1 CDS AT1G18530 ID=AT1G18530.1; Parent=AT1G18530; Name=AT1G18530.1; Note=EF hand calcium-binding protein family; conf_class=1; computational_description=EF hand calcium-binding protein family%3B FUNCTIONS IN: calcium ion binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: male gametophyte%2C flower%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%3B CONTAINS InterPro DOMAIN/s: EF-Hand 1%2C calcium-binding site (InterPro:IPR018247)%2C EF-HAND 2 (InterPro:IPR018249)%2C EF-hand-like domain (InterPro:IPR011992)%2C Calcium-binding EF-hand (InterPro:IPR002048)%2C EF-hand (InterPro:IPR018248)%3B BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT3G25600.1)%3B Has 21367 Blast hits to 15094 proteins in 1525 species: Archae - 2%3B Bacteria - 175%3B Metazoa - 8057%3B Fungi - 4921%3B Plants - 4996%3B Viruses - 2%3B Other Eukaryotes - 3214 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12372144, PMID:15720654, PMID:16023399, PMID:18775970, locus:2027488; locus_type=protein_coding
AT1G18540.1	chr1:006377448	0.0	C/6377448-6377603,6377706-6377887,6377976-6378082,6378292-6378548	AT1G18540.1 CDS AT1G18540 ID=AT1G18540.1; Parent=AT1G18540; Name=AT1G18540.1; Note=Ribosomal protein L6 family protein; conf_class=2; computational_description=Ribosomal protein L6 family protein%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%3B LOCATED IN: in 8 components%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L6%2C N-terminal (InterPro:IPR005568)%2C Ribosomal protein L6E (InterPro:IPR000915)%3B BEST Arabidopsis thaliana protein match is: Ribosomal protein L6 family protein (TAIR:AT1G74050.1)%3B Has 758 Blast hits to 758 proteins in 286 species: Archae - 33%3B Bacteria - 0%3B Metazoa - 332%3B Fungi - 149%3B Plants - 117%3B Viruses - 0%3B Other Eukaryotes - 127 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11598216, PMID:15060130, PMID:15821981, PMID:16618929, PMID:16776300, PMID:17828791, PMID:17934214, PMID:18650403, PMID:18793465, PMID:18775970, PMID:22195043, PMID:24064926, locus:2027483; locus_type=protein_coding
AT1TE20660	chr1:006378686	0.0	W/6378686-6378718	AT1TE20660 transposable_element AT1TE20660 ID=AT1TE20660; Name=AT1TE20660; Alias=HELITRONY1E
AT1TE20665	chr1:006378719	0.0	W/6378719-6379470	AT1TE20665 transposable_element AT1TE20665 ID=AT1TE20665; Name=AT1TE20665; Alias=HELITRONY1B
AT1TE20670	chr1:006379972	0.0	W/6379972-6380659	AT1TE20670 transposable_element AT1TE20670 ID=AT1TE20670; Name=AT1TE20670; Alias=HELITRONY1D
AT1TE20675	chr1:006381178	0.0	C/6381178-6381467	AT1TE20675 transposable_element AT1TE20675 ID=AT1TE20675; Name=AT1TE20675; Alias=ATREP10D
AT1G18550.1	chr1:006381656	0.0	C/6381656-6381688,6381804-6382862,6382970-6383062,6383155-6383205,6383312-6383585,6383673-6384340	AT1G18550.1 CDS AT1G18550 ID=AT1G18550.1; Parent=AT1G18550; Name=AT1G18550.1; Note=ATP binding microtubule motor family protein; conf_class=4; computational_description=ATP binding microtubule motor family protein%3B FUNCTIONS IN: microtubule motor activity%2C ATP binding%3B INVOLVED IN: microtubule-based movement%3B EXPRESSED IN: cultured cell%3B CONTAINS InterPro DOMAIN/s: Kinesin%2C motor region%2C conserved site (InterPro:IPR019821)%2C Kinesin%2C motor domain (InterPro:IPR001752)%3B BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G49650.1)%3B Has 10638 Blast hits to 10129 proteins in 307 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 4775%3B Fungi - 1386%3B Plants - 1857%3B Viruses - 0%3B Other Eukaryotes - 2614 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:17461791, locus:2027478; locus_type=protein_coding
AT1G18560.1	chr1:006385614	0.0	W/6385614-6385653,6385803-6386018,6386113-6386993,6387070-6388005	AT1G18560.1 CDS AT1G18560 ID=AT1G18560.1; Parent=AT1G18560; Name=AT1G18560.1; Note=BED zinc finger and hAT dimerization domain-containing protein; conf_class=6; computational_description=BED zinc finger %3BhAT family dimerisation domain%3B FUNCTIONS IN: protein dimerization activity%2C DNA binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 16 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906)%2C Zinc finger%2C BED-type predicted (InterPro:IPR003656)%3B BEST Arabidopsis thaliana protein match is: BED zinc finger %3BhAT family dimerisation domain (TAIR:AT3G42170.1)%3B Has 1077 Blast hits to 1005 proteins in 94 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 242%3B Fungi - 210%3B Plants - 602%3B Viruses - 0%3B Other Eukaryotes - 21 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:16087178, PMID:17461791, locus:2027468; locus_type=protein_coding
AT1G18570.1	chr1:006389765	0.0	W/6389765-6389900,6390015-6390144,6390234-6391026	AT1G18570.1 CDS AT1G18570 ID=AT1G18570.1; Parent=AT1G18570; Name=AT1G18570.1; Note=myb domain protein 51; curator_summary=Encodes a member of the R2R3-MYB transcription family. Involved in indole glucosinolate biosynthesis.; conf_class=4; symbol=MYB51; Alias=AtMYB51, myb domain protein 51, BW51A, BW51B, HIG1, HIGH INDOLIC GLUCOSINOLATE 1; full_name=myb domain protein 51; computational_description=myb domain protein 51 (MYB51)%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%2C Homeodomain-related (InterPro:IPR012287)%2C Myb transcription factor (InterPro:IPR015495)%3B BEST Arabidopsis thaliana protein match is: myb domain protein 122 (TAIR:AT1G74080.1)%3B Has 9055 Blast hits to 8387 proteins in 480 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 725%3B Fungi - 509%3B Plants - 5977%3B Viruses - 4%3B Other Eukaryotes - 1838 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:9839469, PMID:9628022, PMID:11118137, PMID:11597504, PMID:15086800, PMID:15064386, PMID:15194820, PMID:15235117, PMID:15634198, PMID:16087178, PMID:16463103, PMID:16553894, PMID:16925600, PMID:17316173, PMID:17337630, PMID:17461791, PMID:17616737, PMID:18650403, PMID:18829985, PMID:19095898, PMID:22319074, PMID:22481162, PMID:22995285, PMID:23073694, PMID:23072934, PMID:23144921, PMID:23115560, PMID:23553636, PMID:24431192, PMID:24377444, PMID:24368794, PMID:25049362, PMID:25426131, locus:2027463; locus_type=protein_coding
AT1G18580.1	chr1:006396144	0.0	W/6396144-6396296,6396545-6398005	AT1G18580.1 CDS AT1G18580 ID=AT1G18580.1; Parent=AT1G18580; Name=AT1G18580.1; Note=galacturonosyltransferase 11; curator_summary=Encodes a protein with putative galacturonosyltransferase activity.; conf_class=2; symbol=GAUT11; full_name=galacturonosyltransferase 11; computational_description=galacturonosyltransferase 11 (GAUT11)%3B FUNCTIONS IN: polygalacturonate 4-alpha-galacturonosyltransferase activity%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 19 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Glycosyl transferase%2C family 8 (InterPro:IPR002495)%3B BEST Arabidopsis thaliana protein match is: galacturonosyltransferase 10 (TAIR:AT2G20810.1)%3B Has 1461 Blast hits to 1453 proteins in 263 species: Archae - 0%3B Bacteria - 484%3B Metazoa - 143%3B Fungi - 0%3B Plants - 819%3B Viruses - 0%3B Other Eukaryotes - 15 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16540543, PMID:17461791, PMID:19825675, PMID:25658798, locus:2027453; locus_type=protein_coding
AT1G18590.1	chr1:006398634	0.0	W/6398634-6399674	AT1G18590.1 CDS AT1G18590 ID=AT1G18590.1; Parent=AT1G18590; Name=AT1G18590.1; Note=sulfotransferase 17; curator_summary=encodes a desulfoglucosinolate sulfotransferase%2C involved in the final step of glucosinolate core structure biosynthesis. Has a broad-substrate specificity with preference with methionine-derived desulfoglucosinolates.; conf_class=1; symbol=SOT17; Alias=ATSOT17, SULFOTRANSFERASE 17, ATST5C, ARABIDOPSIS SULFOTRANSFERASE 5C; full_name=sulfotransferase 17; computational_description=sulfotransferase 17 (SOT17)%3B CONTAINS InterPro DOMAIN/s: Sulfotransferase domain (InterPro:IPR000863)%3B BEST Arabidopsis thaliana protein match is: desulfo-glucosinolate sulfotransferase 18 (TAIR:AT1G74090.1)%3B Has 2933 Blast hits to 2889 proteins in 198 species: Archae - 0%3B Bacteria - 241%3B Metazoa - 1692%3B Fungi - 1%3B Plants - 541%3B Viruses - 0%3B Other Eukaryotes - 458 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15234990, PMID:15358770, PMID:15866872, PMID:16367753, PMID:16424108, PMID:16406306, PMID:16911220, PMID:17189325, PMID:17461791, PMID:18467456, PMID:18650403, PMID:19077143, PMID:21281472, PMID:23073694, locus:2027458; locus_type=protein_coding
AT1G18600.1	chr1:006400647	0.0	W/6400647-6401014,6401122-6401242,6401387-6401506,6401657-6401770,6401927-6401971,6402159-6402263,6402353-6402394,6402492-6402587	AT1G18600.1 CDS AT1G18600 ID=AT1G18600.1; Parent=AT1G18600; Name=AT1G18600.1; Note=RHOMBOID-like protein 12; curator_summary=Mitochondrion-located rhomboid-like protein; conf_class=2; symbol=RBL12; Alias=ATRBL12, ARABIDOPSIS RHOMBOID-LIKE PROTEIN 12, AtPARL, PARL, presenilins-associated rhomboid-like protein; full_name=RHOMBOID-like protein 12; computational_description=RHOMBOID-like protein 12 (RBL12)%3B FUNCTIONS IN: serine-type endopeptidase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase S54%2C rhomboid (InterPro:IPR002610)%3B BEST Arabidopsis thaliana protein match is: Rhomboid-related intramembrane serine protease family protein (TAIR:AT1G74130.1)%3B Has 3270 Blast hits to 3270 proteins in 960 species: Archae - 107%3B Bacteria - 1998%3B Metazoa - 110%3B Fungi - 132%3B Plants - 58%3B Viruses - 0%3B Other Eukaryotes - 865 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16895613, PMID:17181860, PMID:18543065, PMID:18650403, PMID:17938163, locus:2027448; locus_type=protein_coding
AT1TE20740	chr1:006402736	0.0	C/6402736-6402869	AT1TE20740 transposable_element AT1TE20740 ID=AT1TE20740; Name=AT1TE20740; Alias=ATREP14
AT1TE20745	chr1:006402870	0.0	C/6402870-6403656	AT1TE20745 transposable_element AT1TE20745 ID=AT1TE20745; Name=AT1TE20745; Alias=ATREP14
AT1TE20750	chr1:006403657	0.0	W/6403657-6403763	AT1TE20750 transposable_element AT1TE20750 ID=AT1TE20750; Name=AT1TE20750; Alias=ATREP3
AT1TE20755	chr1:006403764	0.0	C/6403764-6405272	AT1TE20755 transposable_element AT1TE20755 ID=AT1TE20755; Name=AT1TE20755; Alias=ATREP6
AT1TE20760	chr1:006405273	0.0	W/6405273-6405391	AT1TE20760 transposable_element AT1TE20760 ID=AT1TE20760; Name=AT1TE20760; Alias=ATREP6
AT1G18610.1	chr1:006405779	0.0	W/6405779-6405959,6406282-6406431,6406525-6406692,6406907-6407059,6407155-6407307,6407562-6407726,6407829-6407969,6408080-6408266,6408349-6408595,6408706-6408831	AT1G18610.1 CDS AT1G18610 ID=AT1G18610.1; Parent=AT1G18610; Name=AT1G18610.1; Note=Galactose oxidase/kelch repeat superfamily protein; conf_class=2; computational_description=Galactose oxidase/kelch repeat superfamily protein%3B CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch%2C beta-propeller (InterPro:IPR011043)%2C Kelch repeat type 1 (InterPro:IPR006652)%2C Kelch repeat type 2 (InterPro:IPR011498)%2C Kelch-type beta propeller (InterPro:IPR015915)%3B BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G74150.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, locus:2027443; locus_type=protein_coding
AT1G18610.2	chr1:006405779	0.0	W/6405779-6405959,6406282-6406431,6406525-6406692,6406907-6407059,6407155-6407307,6407562-6407726,6407829-6407969,6408080-6408266,6408349-6408595,6408706-6408831	AT1G18610.2 CDS AT1G18610 ID=AT1G18610.2; Parent=AT1G18610; Name=AT1G18610.2; Note=Galactose oxidase/kelch repeat superfamily protein; Dbxref=PMID:18775970, locus:2027443; computational_description=Galactose oxidase/kelch repeat superfamily protein%3B CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch%2C beta-propeller (InterPro:IPR011043)%2C Kelch repeat type 1 (InterPro:IPR006652)%2C Kelch repeat type 2 (InterPro:IPR011498)%2C Kelch-type beta propeller (InterPro:IPR015915)%3B BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G74150.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; locus_type=protein_coding
AT1G18620.2	chr1:006410191	0.0	W/6410191-6410216,6410558-6410690,6410770-6410854,6411260-6413109,6413237-6413360,6413443-6414269	AT1G18620.2 CDS AT1G18620 ID=AT1G18620.2; Parent=AT1G18620; Name=AT1G18620.2; Note=LONGIFOLIA protein; conf_class=2; symbol=TRM3; full_name=TON1 Recruiting Motif 3; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74160.1)%3B Has 1987 Blast hits to 1263 proteins in 207 species: Archae - 0%3B Bacteria - 172%3B Metazoa - 665%3B Fungi - 149%3B Plants - 271%3B Viruses - 6%3B Other Eukaryotes - 724 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18650403, PMID:22286137, locus:2027473; locus_type=protein_coding
AT1G18620.1	chr1:006410719	0.0	W/6410719-6410854,6411260-6413109,6413237-6413360,6413443-6414269	AT1G18620.1 CDS AT1G18620 ID=AT1G18620.1; Parent=AT1G18620; Name=AT1G18620.1; Note=LONGIFOLIA protein; conf_class=2; symbol=TRM3; full_name=TON1 Recruiting Motif 3; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74160.1)%3B Has 1987 Blast hits to 1263 proteins in 207 species: Archae - 0%3B Bacteria - 172%3B Metazoa - 665%3B Fungi - 149%3B Plants - 271%3B Viruses - 6%3B Other Eukaryotes - 724 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18650403, PMID:22286137, locus:2027473; locus_type=protein_coding
AT1G18620.3	chr1:006410719	0.0	W/6410719-6410854,6411260-6413109,6413237-6413360,6413443-6414269	AT1G18620.3 CDS AT1G18620 ID=AT1G18620.3; Parent=AT1G18620; Name=AT1G18620.3; Note=LONGIFOLIA protein; symbol=TRM3; full_name=TON1 Recruiting Motif 3; Dbxref=PMID:18650403, PMID:22286137, locus:2027473; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74160.1)%3B Has 1987 Blast hits to 1263 proteins in 207 species: Archae - 0%3B Bacteria - 172%3B Metazoa - 665%3B Fungi - 149%3B Plants - 271%3B Viruses - 6%3B Other Eukaryotes - 724 (source: NCBI BLink).; locus_type=protein_coding
AT1G18620.4	chr1:006410719	0.0	W/6410719-6410854,6411260-6413109,6413237-6413360,6413443-6414269	AT1G18620.4 CDS AT1G18620 ID=AT1G18620.4; Parent=AT1G18620; Name=AT1G18620.4; Note=LONGIFOLIA protein; symbol=TRM3; full_name=TON1 Recruiting Motif 3; Dbxref=PMID:18650403, PMID:22286137, locus:2027473; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74160.1)%3B Has 1987 Blast hits to 1263 proteins in 207 species: Archae - 0%3B Bacteria - 172%3B Metazoa - 665%3B Fungi - 149%3B Plants - 271%3B Viruses - 6%3B Other Eukaryotes - 724 (source: NCBI BLink).; locus_type=protein_coding
AT1G18620.5	chr1:006411538	0.0	W/6411538-6413109,6413237-6413360,6413443-6414269	AT1G18620.5 CDS AT1G18620 ID=AT1G18620.5; Parent=AT1G18620; Name=AT1G18620.5; Note=LONGIFOLIA protein; symbol=TRM3; full_name=TON1 Recruiting Motif 3; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74160.1)%3B Has 1987 Blast hits to 1263 proteins in 207 species: Archae - 0%3B Bacteria - 172%3B Metazoa - 665%3B Fungi - 149%3B Plants - 271%3B Viruses - 6%3B Other Eukaryotes - 724 (source: NCBI BLink).; Dbxref=PMID:18650403, PMID:22286137, locus:2027473; locus_type=protein_coding
AT1G18630.1	chr1:006415226	0.0	W/6415226-6415349,6415473-6415541,6415625-6415731,6416116-6416283	AT1G18630.1 CDS AT1G18630 ID=AT1G18630.1; Parent=AT1G18630; Name=AT1G18630.1; Note=glycine-rich RNA-binding protein 6; curator_summary=encodes a glycine-rich RNA binding protein.; conf_class=1; symbol=GR-RBP6; full_name=glycine-rich RNA-binding protein 6; computational_description=glycine-rich RNA-binding protein 6 (GR-RBP6)%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: glycine-rich RNA-binding protein 3 (TAIR:AT5G61030.1)%3B Has 1987 Blast hits to 1263 proteins in 207 species: Archae - 0%3B Bacteria - 172%3B Metazoa - 665%3B Fungi - 149%3B Plants - 271%3B Viruses - 6%3B Other Eukaryotes - 724 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11972043, PMID:16207746, locus:2027438; locus_type=protein_coding
AT1G18640.2	chr1:006416524	0.0	C/6416524-6416649,6416733-6416786,6416872-6417021,6417141-6417234,6417502-6417609,6417702-6417834,6418023-6418245	AT1G18640.2 CDS AT1G18640 ID=AT1G18640.2; Parent=AT1G18640; Name=AT1G18640.2; Note=3-phosphoserine phosphatase; curator_summary=Encodes a 3-phosphoserine phosphatase acting in the last step of serine biosynthesis within the chloroplast. Essential for embryo%2C pollen and root development.; conf_class=2; symbol=PSP; Alias=PSP1, phosphoserine phosphatase 1; full_name=3-phosphoserine phosphatase; computational_description=3-phosphoserine phosphatase (PSP)%3B FUNCTIONS IN: phosphoserine phosphatase activity%3B INVOLVED IN: L-serine biosynthetic process%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834)%2C Phosphoserine phosphatase SerB (InterPro:IPR004469)%2C HAD-superfamily hydrolase%2C subfamily IB%2C PSPase-like (InterPro:IPR006383)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10196182, PMID:11354602, PMID:14576160, PMID:18603615, PMID:22337887, PMID:23771893, PMID:24299976, locus:2027433; locus_type=protein_coding
AT1G18640.3	chr1:006416740	0.0	C/6416740-6417021,6417141-6417234,6417502-6417609,6417702-6417834,6418023-6418245	AT1G18640.3 CDS AT1G18640 ID=AT1G18640.3; Parent=AT1G18640; Name=AT1G18640.3; Note=3-phosphoserine phosphatase; symbol=PSP; Alias=PSP1, phosphoserine phosphatase 1; full_name=3-phosphoserine phosphatase; curator_summary=Encodes a 3-phosphoserine phosphatase acting in the last step of serine biosynthesis within the chloroplast. Essential for embryo%2C pollen and root development.; computational_description=3-phosphoserine phosphatase (PSP)%3B FUNCTIONS IN: phosphoserine phosphatase activity%3B INVOLVED IN: L-serine biosynthetic process%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834)%2C Phosphoserine phosphatase SerB (InterPro:IPR004469)%2C HAD-superfamily hydrolase%2C subfamily IB%2C PSPase-like (InterPro:IPR006383)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).; Dbxref=PMID:10196182, PMID:11354602, PMID:14576160, PMID:18603615, PMID:22337887, PMID:23771893, PMID:24299976, locus:2027433; locus_type=protein_coding
AT1G18650.1	chr1:006419036	0.0	C/6419036-6419264,6419426-6419459,6419779-6420018,6420362-6420413	AT1G18650.1 CDS AT1G18650 ID=AT1G18650.1; Parent=AT1G18650; Name=AT1G18650.1; Note=plasmodesmata callose-binding protein 3; curator_summary=Encodes a member of the X8-GPI family of proteins. It localizes to the plasmodesmata and is predicted to bind callose.; conf_class=2; symbol=PDCB3; full_name=plasmodesmata callose-binding protein 3; computational_description=plasmodesmata callose-binding protein 3 (PDCB3)%3B CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946)%3B BEST Arabidopsis thaliana protein match is: glucan endo-1%2C3-beta-glucosidase-like protein 3 (TAIR:AT5G08000.1)%3B Has 1473 Blast hits to 1425 proteins in 72 species: Archae - 4%3B Bacteria - 6%3B Metazoa - 5%3B Fungi - 46%3B Plants - 1391%3B Viruses - 0%3B Other Eukaryotes - 21 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12068095, PMID:12805588, PMID:16297073, PMID:18650403, PMID:19223515, locus:2027428; locus_type=protein_coding
AT1G18650.2	chr1:006419356	0.0	C/6419356-6419459,6419779-6420018,6420362-6420413	AT1G18650.2 CDS AT1G18650 ID=AT1G18650.2; Parent=AT1G18650; Name=AT1G18650.2; Note=plasmodesmata callose-binding protein 3; symbol=PDCB3; full_name=plasmodesmata callose-binding protein 3; curator_summary=Encodes a member of the X8-GPI family of proteins. It localizes to the plasmodesmata and is predicted to bind callose.; computational_description=plasmodesmata callose-binding protein 3 (PDCB3)%3B CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946)%3B BEST Arabidopsis thaliana protein match is: glucan endo-1%2C3-beta-glucosidase-like protein 3 (TAIR:AT5G08000.1)%3B Has 1473 Blast hits to 1425 proteins in 72 species: Archae - 4%3B Bacteria - 6%3B Metazoa - 5%3B Fungi - 46%3B Plants - 1391%3B Viruses - 0%3B Other Eukaryotes - 21 (source: NCBI BLink).; Dbxref=PMID:12068095, PMID:12805588, PMID:16297073, PMID:18650403, PMID:19223515, locus:2027428; locus_type=protein_coding
AT1G18660.1	chr1:006421433	0.0	W/6421433-6421501,6421644-6421745,6422098-6422180,6422359-6422443,6422528-6422614,6422729-6422790,6422883-6423073,6423160-6423220,6423329-6423506,6423839-6423877,6423971-6424032,6424136-6424172,6424333-6424382,6424645-6424711,6424793-6424871,6425193-6425272,6425346-6425414,6425506-6425565	AT1G18660.1 CDS AT1G18660 ID=AT1G18660.1; Parent=AT1G18660; Name=AT1G18660.1; Note=zinc finger (C3HC4-type RING finger) family protein; conf_class=2; computational_description=zinc finger (C3HC4-type RING finger) family protein%3B FUNCTIONS IN: ATP-dependent peptidase activity%2C binding%2C zinc ion binding%3B INVOLVED IN: proteolysis%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase S16%2C lon N-terminal (InterPro:IPR003111)%2C Zinc finger%2C RING-type%2C conserved site (InterPro:IPR017907)%2C Tetratricopeptide-like helical (InterPro:IPR011990)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: ATP-dependent protease La (LON) domain protein (TAIR:AT1G75460.1)%3B Has 12320 Blast hits to 11867 proteins in 1696 species: Archae - 10%3B Bacteria - 754%3B Metazoa - 7268%3B Fungi - 935%3B Plants - 1517%3B Viruses - 81%3B Other Eukaryotes - 1755 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11983057, PMID:15644464, PMID:17181860, locus:2035025; locus_type=protein_coding
AT1G18660.2	chr1:006421433	0.0	W/6421433-6421501,6421644-6421745,6422098-6422180,6422359-6422443,6422528-6422614,6422729-6422790,6422883-6423073,6423160-6423220,6423329-6423506,6423839-6423877,6423971-6424032,6424136-6424172,6424333-6424382,6424645-6424711,6424793-6424871,6425193-6425272,6425346-6425414,6425506-6425565	AT1G18660.2 CDS AT1G18660 ID=AT1G18660.2; Parent=AT1G18660; Name=AT1G18660.2; Note=zinc finger (C3HC4-type RING finger) family protein; conf_class=2; computational_description=zinc finger (C3HC4-type RING finger) family protein%3B FUNCTIONS IN: ATP-dependent peptidase activity%2C binding%2C zinc ion binding%3B INVOLVED IN: proteolysis%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase S16%2C lon N-terminal (InterPro:IPR003111)%2C Zinc finger%2C RING-type%2C conserved site (InterPro:IPR017907)%2C Tetratricopeptide-like helical (InterPro:IPR011990)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: ATP-dependent protease La (LON) domain protein (TAIR:AT1G75460.1)%3B Has 12320 Blast hits to 11867 proteins in 1696 species: Archae - 10%3B Bacteria - 754%3B Metazoa - 7268%3B Fungi - 935%3B Plants - 1517%3B Viruses - 81%3B Other Eukaryotes - 1755 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11983057, PMID:15644464, PMID:17181860, locus:2035025; locus_type=protein_coding
AT1G18660.3	chr1:006421433	0.0	W/6421433-6421501,6421644-6421745,6422098-6422180,6422359-6422443,6422528-6422614,6422729-6422790,6422883-6423073,6423160-6423220,6423329-6423506,6423839-6423877,6423971-6424032,6424136-6424172,6424333-6424382,6424645-6424711,6424793-6424871,6425193-6425272,6425346-6425414,6425506-6425565	AT1G18660.3 CDS AT1G18660 ID=AT1G18660.3; Parent=AT1G18660; Name=AT1G18660.3; Note=zinc finger (C3HC4-type RING finger) family protein; conf_class=2; computational_description=zinc finger (C3HC4-type RING finger) family protein%3B FUNCTIONS IN: ATP-dependent peptidase activity%2C binding%2C zinc ion binding%3B INVOLVED IN: proteolysis%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase S16%2C lon N-terminal (InterPro:IPR003111)%2C Zinc finger%2C RING-type%2C conserved site (InterPro:IPR017907)%2C Tetratricopeptide-like helical (InterPro:IPR011990)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: ATP-dependent protease La (LON) domain protein (TAIR:AT1G75460.1)%3B Has 12320 Blast hits to 11867 proteins in 1696 species: Archae - 10%3B Bacteria - 754%3B Metazoa - 7268%3B Fungi - 935%3B Plants - 1517%3B Viruses - 81%3B Other Eukaryotes - 1755 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11983057, PMID:15644464, PMID:17181860, locus:2035025; locus_type=protein_coding
AT1G18660.4	chr1:006421433	0.0	W/6421433-6421501,6421644-6421745,6422098-6422180,6422359-6422443,6422528-6422614,6422729-6422790,6422883-6423073,6423160-6423220,6423329-6423506,6423839-6423877,6423971-6424032,6424136-6424172,6424333-6424382,6424645-6424711,6424793-6424871,6425193-6425272,6425346-6425489	AT1G18660.4 CDS AT1G18660 ID=AT1G18660.4; Parent=AT1G18660; Name=AT1G18660.4; Note=zinc finger (C3HC4-type RING finger) family protein; conf_class=3; computational_description=zinc finger (C3HC4-type RING finger) family protein%3B FUNCTIONS IN: ATP-dependent peptidase activity%2C binding%2C zinc ion binding%3B INVOLVED IN: proteolysis%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase S16%2C lon N-terminal (InterPro:IPR003111)%2C Zinc finger%2C RING-type%2C conserved site (InterPro:IPR017907)%2C Tetratricopeptide-like helical (InterPro:IPR011990)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: ATP-dependent protease La (LON) domain protein (TAIR:AT1G75460.1)%3B Has 12320 Blast hits to 11867 proteins in 1696 species: Archae - 10%3B Bacteria - 754%3B Metazoa - 7268%3B Fungi - 935%3B Plants - 1517%3B Viruses - 81%3B Other Eukaryotes - 1755 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11983057, PMID:15644464, PMID:17181860, locus:2035025; locus_type=protein_coding
AT1G18670.1	chr1:006427242	0.0	C/6427242-6427261,6427354-6427486,6427973-6428512,6428625-6428715,6428902-6428999,6429126-6429359,6429494-6429814,6429914-6430198,6430289-6430696	AT1G18670.1 CDS AT1G18670 ID=AT1G18670.1; Parent=AT1G18670; Name=AT1G18670.1; Note=Protein kinase superfamily protein; curator_summary=Encodes a cyclin-dependent kinase-like protein with a ser/thr protein kinase domain and an N-terminal myristoylation sequence. Mutants in this gene are unable to express female sterility in response to beta-aminobutyric acid%2C as wild type plants do.; conf_class=4; symbol=IBS1; full_name=IMPAIRED IN BABA-INDUCED STERILITY 1; computational_description=IMPAIRED IN BABA-INDUCED STERILITY 1 (IBS1)%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%2C N-terminal protein myristoylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G74330.2)%3B Has 121773 Blast hits to 120368 proteins in 4310 species: Archae - 86%3B Bacteria - 13259%3B Metazoa - 45481%3B Fungi - 12893%3B Plants - 29647%3B Viruses - 443%3B Other Eukaryotes - 19964 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:12912986, PMID:15010610, PMID:15686519, PMID:15722464, PMID:16243906, PMID:22209872, locus:2034944; locus_type=protein_coding
AT1G18670.3	chr1:006427301	0.0	C/6427301-6427486,6427973-6428512,6428625-6428715,6428902-6428999,6429126-6429359,6429494-6429814,6429914-6430198,6430289-6430696	AT1G18670.3 CDS AT1G18670 ID=AT1G18670.3; Parent=AT1G18670; Name=AT1G18670.3; Note=Protein kinase superfamily protein; symbol=IBS1; full_name=IMPAIRED IN BABA-INDUCED STERILITY 1; curator_summary=Encodes a cyclin-dependent kinase-like protein with a ser/thr protein kinase domain and an N-terminal myristoylation sequence. Mutants in this gene are unable to express female sterility in response to beta-aminobutyric acid%2C as wild type plants do.; computational_description=IMPAIRED IN BABA-INDUCED STERILITY 1 (IBS1)%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%2C N-terminal protein myristoylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G74330.2)%3B Has 121773 Blast hits to 120368 proteins in 4310 species: Archae - 86%3B Bacteria - 13259%3B Metazoa - 45481%3B Fungi - 12893%3B Plants - 29647%3B Viruses - 443%3B Other Eukaryotes - 19964 (source: NCBI BLink).; Dbxref=PMID:12912986, PMID:15010610, PMID:15686519, PMID:15722464, PMID:16243906, PMID:22209872, locus:2034944; locus_type=protein_coding
AT1G18670.2	chr1:006427961	0.0	C/6427961-6428512,6428625-6428715,6428902-6428999,6429126-6429359,6429494-6429814,6429914-6430198,6430289-6430696	AT1G18670.2 CDS AT1G18670 ID=AT1G18670.2; Parent=AT1G18670; Name=AT1G18670.2; Note=Protein kinase superfamily protein; symbol=IBS1; full_name=IMPAIRED IN BABA-INDUCED STERILITY 1; curator_summary=Encodes a cyclin-dependent kinase-like protein with a ser/thr protein kinase domain and an N-terminal myristoylation sequence. Mutants in this gene are unable to express female sterility in response to beta-aminobutyric acid%2C as wild type plants do.; computational_description=IMPAIRED IN BABA-INDUCED STERILITY 1 (IBS1)%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%2C N-terminal protein myristoylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G74330.2)%3B Has 121773 Blast hits to 120368 proteins in 4310 species: Archae - 86%3B Bacteria - 13259%3B Metazoa - 45481%3B Fungi - 12893%3B Plants - 29647%3B Viruses - 443%3B Other Eukaryotes - 19964 (source: NCBI BLink).; Dbxref=PMID:12912986, PMID:15010610, PMID:15686519, PMID:15722464, PMID:16243906, PMID:22209872, locus:2034944; locus_type=protein_coding
AT1TE20840	chr1:006429617	0.0	W/6429617-6430111	AT1TE20840 transposable_element AT1TE20840 ID=AT1TE20840; Name=AT1TE20840; Alias=ATMU6N1
AT1G18680.1	chr1:006432133	0.0	C/6432133-6432275,6432917-6433039,6433140-6433434	AT1G18680.1 CDS AT1G18680 ID=AT1G18680.1; Parent=AT1G18680; Name=AT1G18680.1; Note=HNH endonuclease domain-containing protein; conf_class=2; computational_description=HNH endonuclease domain-containing protein%3B FUNCTIONS IN: endonuclease activity%2C nucleic acid binding%3B INVOLVED IN: N-terminal protein myristoylation%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 7 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: HNH nuclease (InterPro:IPR003615)%2C HNH endonuclease (InterPro:IPR002711)%3B BEST Arabidopsis thaliana protein match is: HNH endonuclease (TAIR:AT3G47490.1)%3B Has 84 Blast hits to 84 proteins in 23 species: Archae - 0%3B Bacteria - 8%3B Metazoa - 0%3B Fungi - 0%3B Plants - 68%3B Viruses - 0%3B Other Eukaryotes - 8 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12912986, PMID:14576160, PMID:21908688, locus:2035020; locus_type=protein_coding
AT1G18690.1	chr1:006435153	0.0	W/6435153-6436694	AT1G18690.1 CDS AT1G18690 ID=AT1G18690.1; Parent=AT1G18690; Name=AT1G18690.1; Note=Galactosyl transferase GMA12/MNN10 family protein; conf_class=1; symbol=XXT4; full_name=xyloglucan xylosyltransferase 4; computational_description=Galactosyl transferase GMA12/MNN10 family protein%3B FUNCTIONS IN: transferase activity%2C transferring glycosyl groups%2C transferase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: integral to membrane%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Galactosyl transferase (InterPro:IPR008630)%3B BEST Arabidopsis thaliana protein match is: xyloglucan xylosyltransferase 5 (TAIR:AT1G74380.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12011320, PMID:12032363, PMID:18557833, PMID:22670626, locus:2035030; locus_type=protein_coding
AT1G18690.2	chr1:006435153	0.0	W/6435153-6436694	AT1G18690.2 CDS AT1G18690 ID=AT1G18690.2; Parent=AT1G18690; Name=AT1G18690.2; Note=Galactosyl transferase GMA12/MNN10 family protein; symbol=XXT4; full_name=xyloglucan xylosyltransferase 4; Dbxref=PMID:12011320, PMID:12032363, PMID:18557833, PMID:22670626, locus:2035030; computational_description=Galactosyl transferase GMA12/MNN10 family protein%3B FUNCTIONS IN: transferase activity%2C transferring glycosyl groups%2C transferase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: integral to membrane%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Galactosyl transferase (InterPro:IPR008630)%3B BEST Arabidopsis thaliana protein match is: xyloglucan xylosyltransferase 5 (TAIR:AT1G74380.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; locus_type=protein_coding
AT1G18690.3	chr1:006435153	0.0	W/6435153-6436694	AT1G18690.3 CDS AT1G18690 ID=AT1G18690.3; Parent=AT1G18690; Name=AT1G18690.3; Note=Galactosyl transferase GMA12/MNN10 family protein; symbol=XXT4; full_name=xyloglucan xylosyltransferase 4; Dbxref=PMID:12011320, PMID:12032363, PMID:18557833, PMID:22670626, locus:2035030; computational_description=Galactosyl transferase GMA12/MNN10 family protein%3B FUNCTIONS IN: transferase activity%2C transferring glycosyl groups%2C transferase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: integral to membrane%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Galactosyl transferase (InterPro:IPR008630)%3B BEST Arabidopsis thaliana protein match is: xyloglucan xylosyltransferase 5 (TAIR:AT1G74380.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; locus_type=protein_coding
AT1G18690.4	chr1:006435153	0.0	W/6435153-6436694	AT1G18690.4 CDS AT1G18690 ID=AT1G18690.4; Parent=AT1G18690; Name=AT1G18690.4; Note=Galactosyl transferase GMA12/MNN10 family protein; symbol=XXT4; full_name=xyloglucan xylosyltransferase 4; Dbxref=PMID:12011320, PMID:12032363, PMID:18557833, PMID:22670626, locus:2035030; computational_description=Galactosyl transferase GMA12/MNN10 family protein%3B FUNCTIONS IN: transferase activity%2C transferring glycosyl groups%2C transferase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: integral to membrane%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Galactosyl transferase (InterPro:IPR008630)%3B BEST Arabidopsis thaliana protein match is: xyloglucan xylosyltransferase 5 (TAIR:AT1G74380.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; locus_type=protein_coding
AT1G18700.5	chr1:006437477	0.0	W/6437477-6437729,6437844-6437913,6438165-6438207,6438297-6438374,6438488-6438572,6438676-6438758,6439115-6439172,6439530-6439640,6439973-6440030,6440189-6440285,6440710-6440745,6440913-6441049,6441208-6441278,6441365-6441418,6441567-6441709,6441803-6441943,6442102-6442341,6442427-6442486,6442568-6442825,6442906-6443046	AT1G18700.5 CDS AT1G18700 ID=AT1G18700.5; Parent=AT1G18700; Name=AT1G18700.5; Note=DNAJ heat shock N-terminal domain-containing protein; computational_description=DNAJ heat shock N-terminal domain-containing protein%3B FUNCTIONS IN: heat shock protein binding%3B INVOLVED IN: protein folding%3B LOCATED IN: endoplasmic reticulum%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Molecular chaperone%2C heat shock protein%2C Hsp40%2C DnaJ (InterPro:IPR015609)%2C Heat shock protein DnaJ%2C N-terminal (InterPro:IPR001623)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B Has 368 Blast hits to 366 proteins in 88 species: Archae - 2%3B Bacteria - 18%3B Metazoa - 188%3B Fungi - 16%3B Plants - 102%3B Viruses - 0%3B Other Eukaryotes - 42 (source: NCBI BLink).; Dbxref=PMID:16618929, PMID:18775970, locus:2034985; locus_type=protein_coding
AT1G18700.1	chr1:006437591	0.0	W/6437591-6437729,6437844-6437913,6438165-6438207,6438297-6438374,6438488-6438572,6438676-6438758,6439115-6439172,6439530-6439640,6439973-6440030,6440189-6440285,6440710-6440745,6440913-6441049,6441208-6441278,6441365-6441418,6441567-6441709,6441803-6441943,6442102-6442341,6442427-6442486,6442568-6442825,6442906-6443046	AT1G18700.1 CDS AT1G18700 ID=AT1G18700.1; Parent=AT1G18700; Name=AT1G18700.1; Note=DNAJ heat shock N-terminal domain-containing protein; conf_class=2; computational_description=DNAJ heat shock N-terminal domain-containing protein%3B FUNCTIONS IN: heat shock protein binding%3B INVOLVED IN: protein folding%3B LOCATED IN: endoplasmic reticulum%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Molecular chaperone%2C heat shock protein%2C Hsp40%2C DnaJ (InterPro:IPR015609)%2C Heat shock protein DnaJ%2C N-terminal (InterPro:IPR001623)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B Has 368 Blast hits to 366 proteins in 88 species: Archae - 2%3B Bacteria - 18%3B Metazoa - 188%3B Fungi - 16%3B Plants - 102%3B Viruses - 0%3B Other Eukaryotes - 42 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16618929, PMID:18775970, locus:2034985; locus_type=protein_coding
AT1G18700.2	chr1:006437591	0.0	W/6437591-6437729,6437844-6437913,6438165-6438207,6438297-6438374,6438488-6438572,6438676-6438758,6439115-6439172,6439530-6439640,6439973-6440030,6440189-6440285,6440710-6440745,6440913-6441049,6441208-6441278,6441365-6441418,6441567-6441709,6441803-6441943,6442102-6442341,6442427-6442486,6442568-6442825,6442906-6443029,6443783-6443814	AT1G18700.2 CDS AT1G18700 ID=AT1G18700.2; Parent=AT1G18700; Name=AT1G18700.2; Note=DNAJ heat shock N-terminal domain-containing protein; conf_class=2; computational_description=DNAJ heat shock N-terminal domain-containing protein%3B FUNCTIONS IN: heat shock protein binding%3B INVOLVED IN: protein folding%3B LOCATED IN: endoplasmic reticulum%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Molecular chaperone%2C heat shock protein%2C Hsp40%2C DnaJ (InterPro:IPR015609)%2C Heat shock protein DnaJ%2C N-terminal (InterPro:IPR001623)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B Has 368 Blast hits to 366 proteins in 88 species: Archae - 2%3B Bacteria - 18%3B Metazoa - 188%3B Fungi - 16%3B Plants - 102%3B Viruses - 0%3B Other Eukaryotes - 42 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16618929, PMID:18775970, locus:2034985; locus_type=protein_coding
AT1G18700.3	chr1:006437591	0.0	W/6437591-6437729,6437844-6437913,6438165-6438207,6438297-6438374,6438488-6438572,6438676-6438758,6439115-6439172,6439530-6439640,6439896-6439938,6440189-6440285,6440710-6440745,6440913-6441049,6441208-6441278,6441365-6441418,6441567-6441709,6441803-6441943,6442102-6442341,6442427-6442486,6442568-6442825,6442906-6443046	AT1G18700.3 CDS AT1G18700 ID=AT1G18700.3; Parent=AT1G18700; Name=AT1G18700.3; Note=DNAJ heat shock N-terminal domain-containing protein; conf_class=6; computational_description=DNAJ heat shock N-terminal domain-containing protein%3B FUNCTIONS IN: heat shock protein binding%3B INVOLVED IN: protein folding%3B LOCATED IN: endoplasmic reticulum%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Molecular chaperone%2C heat shock protein%2C Hsp40%2C DnaJ (InterPro:IPR015609)%2C Heat shock protein DnaJ%2C N-terminal (InterPro:IPR001623)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B Has 368 Blast hits to 366 proteins in 88 species: Archae - 2%3B Bacteria - 18%3B Metazoa - 188%3B Fungi - 16%3B Plants - 102%3B Viruses - 0%3B Other Eukaryotes - 42 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:16618929, PMID:18775970, locus:2034985; locus_type=protein_coding
AT1G18700.4	chr1:006437591	0.0	W/6437591-6437767,6437837-6437913,6438165-6438207,6438297-6438374,6438488-6438572,6438676-6438758,6439115-6439172,6439530-6439640,6439973-6440030,6440189-6440285,6440710-6440745,6440913-6441049,6441208-6441278,6441365-6441418,6441567-6441709,6441803-6441943,6442102-6442341,6442427-6442486,6442568-6442825,6442906-6443046	AT1G18700.4 CDS AT1G18700 ID=AT1G18700.4; Parent=AT1G18700; Name=AT1G18700.4; Note=DNAJ heat shock N-terminal domain-containing protein; conf_class=4; computational_description=DNAJ heat shock N-terminal domain-containing protein%3B FUNCTIONS IN: heat shock protein binding%3B INVOLVED IN: protein folding%3B LOCATED IN: endoplasmic reticulum%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Molecular chaperone%2C heat shock protein%2C Hsp40%2C DnaJ (InterPro:IPR015609)%2C Heat shock protein DnaJ%2C N-terminal (InterPro:IPR001623)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B Has 368 Blast hits to 366 proteins in 88 species: Archae - 2%3B Bacteria - 18%3B Metazoa - 188%3B Fungi - 16%3B Plants - 102%3B Viruses - 0%3B Other Eukaryotes - 42 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:16618929, PMID:18775970, locus:2034985; locus_type=protein_coding
AT1G18700.6	chr1:006437591	0.0	W/6437591-6437729,6437844-6437913,6438165-6438207,6438297-6438374,6438488-6438572,6438676-6438758,6439115-6439172,6439530-6439640,6439896-6439938,6440189-6440285,6440710-6440745,6440913-6441049,6441208-6441278,6441365-6441418,6441567-6441709,6441803-6441943,6442102-6442341,6442427-6442486,6442568-6442825,6442906-6443029,6443783-6443814	AT1G18700.6 CDS AT1G18700 ID=AT1G18700.6; Parent=AT1G18700; Name=AT1G18700.6; Note=DNAJ heat shock N-terminal domain-containing protein; computational_description=DNAJ heat shock N-terminal domain-containing protein%3B FUNCTIONS IN: heat shock protein binding%3B INVOLVED IN: protein folding%3B LOCATED IN: endoplasmic reticulum%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Molecular chaperone%2C heat shock protein%2C Hsp40%2C DnaJ (InterPro:IPR015609)%2C Heat shock protein DnaJ%2C N-terminal (InterPro:IPR001623)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B Has 368 Blast hits to 366 proteins in 88 species: Archae - 2%3B Bacteria - 18%3B Metazoa - 188%3B Fungi - 16%3B Plants - 102%3B Viruses - 0%3B Other Eukaryotes - 42 (source: NCBI BLink).; Dbxref=PMID:16618929, PMID:18775970, locus:2034985; locus_type=protein_coding
AT1TE20890	chr1:006445974	0.0	W/6445974-6446201	AT1TE20890 transposable_element AT1TE20890 ID=AT1TE20890; Name=AT1TE20890; Alias=TSCL
AT1G05407.1	chr1:006449229	0.0	C/6449229-6449459	AT1G05407.1 lnc_RNA AT1G05407 ID=AT1G05407.1; Parent=AT1G05407; Name=AT1G05407.1; locus_type=long_noncoding_rna
AT1G05413.1	chr1:006449436	0.0	W/6449436-6449681	AT1G05413.1 lnc_RNA AT1G05413 ID=AT1G05413.1; Parent=AT1G05413; Name=AT1G05413.1; locus_type=long_noncoding_rna
AT1TE20900	chr1:006449849	0.0	C/6449849-6450293	AT1TE20900 transposable_element AT1TE20900 ID=AT1TE20900; Name=AT1TE20900; Alias=BRODYAGA1A
AT1TE20905	chr1:006450294	0.0	W/6450294-6450340	AT1TE20905 transposable_element AT1TE20905 ID=AT1TE20905; Name=AT1TE20905; Alias=ATREP11
AT1TE20910	chr1:006450341	0.0	C/6450341-6450389	AT1TE20910 transposable_element AT1TE20910 ID=AT1TE20910; Name=AT1TE20910; Alias=ATDNA2T9C
AT1G18710.1	chr1:006450781	0.0	W/6450781-6450913,6452076-6452205,6452446-6452986	AT1G18710.1 CDS AT1G18710 ID=AT1G18710.1; Parent=AT1G18710; Name=AT1G18710.1; Note=myb domain protein 47; curator_summary=Member of the R2R3 factor gene family.; conf_class=1; symbol=MYB47; Alias=AtMYB47, myb domain protein 47; full_name=myb domain protein 47; computational_description=myb domain protein 47 (MYB47)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: response to jasmonic acid stimulus%2C response to salt stress%2C regulation of transcription%2C DNA-dependent%3B LOCATED IN: nucleus%2C cytoplasm%3B EXPRESSED IN: leaf lamina base%2C stem%2C leaf whorl%2C leaf%3B EXPRESSED DURING: LP.06 six leaves visible%2C LP.04 four leaves visible%2C LP.08 eight leaves visible%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%2C Homeodomain-related (InterPro:IPR012287)%2C Myb transcription factor (InterPro:IPR015495)%3B BEST Arabidopsis thaliana protein match is: myb domain protein 95 (TAIR:AT1G74430.1)%3B Has 8675 Blast hits to 7987 proteins in 483 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 776%3B Fungi - 509%3B Plants - 5635%3B Viruses - 3%3B Other Eukaryotes - 1752 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11118137, PMID:11597504, PMID:14535885, PMID:15078338, PMID:15610358, PMID:15713015, PMID:15772289, PMID:16021335, PMID:16463103, PMID:17316173, PMID:17351116, PMID:17411438, PMID:24377444, locus:2035015; locus_type=protein_coding
AT1TE20915	chr1:006453142	0.0	C/6453142-6453546	AT1TE20915 transposable_element AT1TE20915 ID=AT1TE20915; Name=AT1TE20915; Alias=BRODYAGA1A
AT1TE20920	chr1:006454531	0.0	W/6454531-6454676	AT1TE20920 transposable_element AT1TE20920 ID=AT1TE20920; Name=AT1TE20920; Alias=HELITRONY3
AT1TE20925	chr1:006454677	0.0	W/6454677-6456015	AT1TE20925 transposable_element AT1TE20925 ID=AT1TE20925; Name=AT1TE20925; Alias=SIMPLEHAT2
AT1TE20930	chr1:006456016	0.0	W/6456016-6456183	AT1TE20930 transposable_element AT1TE20930 ID=AT1TE20930; Name=AT1TE20930; Alias=HELITRONY3
AT1G18720.1	chr1:006458020	0.0	C/6458020-6458142,6458272-6458343,6458451-6458513,6459296-6459658	AT1G18720.1 CDS AT1G18720 ID=AT1G18720.1; Parent=AT1G18720; Name=AT1G18720.1; Note=ER membrane protein%2C putative (DUF962); conf_class=2; computational_description=Protein of unknown function (DUF962)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF962 (InterPro:IPR009305)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF962) (TAIR:AT1G74440.1)%3B Has 638 Blast hits to 636 proteins in 299 species: Archae - 0%3B Bacteria - 335%3B Metazoa - 3%3B Fungi - 143%3B Plants - 88%3B Viruses - 0%3B Other Eukaryotes - 69 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18650403, PMID:18775970, locus:2034975; locus_type=protein_coding
AT1G18720.2	chr1:006458020	0.0	C/6458020-6458142,6458272-6458343,6458451-6458513,6459296-6459658	AT1G18720.2 CDS AT1G18720 ID=AT1G18720.2; Parent=AT1G18720; Name=AT1G18720.2; Note=ER membrane protein%2C putative (DUF962); Dbxref=PMID:18650403, PMID:18775970, locus:2034975; computational_description=Protein of unknown function (DUF962)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF962 (InterPro:IPR009305)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF962) (TAIR:AT1G74440.1)%3B Has 638 Blast hits to 636 proteins in 299 species: Archae - 0%3B Bacteria - 335%3B Metazoa - 3%3B Fungi - 143%3B Plants - 88%3B Viruses - 0%3B Other Eukaryotes - 69 (source: NCBI BLink).; locus_type=protein_coding
AT1G18730.1	chr1:006460625	0.0	W/6460625-6460690,6460767-6460808,6460896-6461073,6461174-6461229,6461318-6461389,6461994-6462107	AT1G18730.1 CDS AT1G18730 ID=AT1G18730.1; Parent=AT1G18730; Name=AT1G18730.1; Note=NDH dependent flow 6; curator_summary=likely a subunit of the chloroplast NAD(P)H dehydrogenase complex%2C involved in PSI cyclic electron transport. Located on the thylakoid membrane. Mutant has impaired NAD(P)H dehydrogenase activity.; conf_class=2; symbol=PnsB4; Alias=NDF6, NDH dependent flow 6; full_name=Photosynthetic NDH subcomplex B 4; computational_description=NDH dependent flow 6 (NDF6)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: photosynthetic electron transport in photosystem I%3B LOCATED IN: chloroplast thylakoid membrane%2C chloroplast%2C NAD(P)H dehydrogenase complex (plastoquinone)%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B Has 36 Blast hits to 36 proteins in 12 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 36%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15322131, PMID:18535009, PMID:18650403, PMID:21785130, PMID:24089436, locus:2034980; locus_type=protein_coding
AT1G18730.2	chr1:006460625	0.0	W/6460625-6460690,6460767-6460808,6460899-6461073,6461174-6461229,6461318-6461389,6461844-6461849	AT1G18730.2 CDS AT1G18730 ID=AT1G18730.2; Parent=AT1G18730; Name=AT1G18730.2; Note=NDH dependent flow 6; curator_summary=likely a subunit of the chloroplast NAD(P)H dehydrogenase complex%2C involved in PSI cyclic electron transport. Located on the thylakoid membrane. Mutant has impaired NAD(P)H dehydrogenase activity.; conf_class=2; symbol=PnsB4; Alias=NDF6, NDH dependent flow 6; full_name=Photosynthetic NDH subcomplex B 4; computational_description=NDH dependent flow 6 (NDF6)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: photosynthetic electron transport in photosystem I%3B LOCATED IN: chloroplast thylakoid membrane%2C chloroplast%2C NAD(P)H dehydrogenase complex (plastoquinone)%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B Has 36 Blast hits to 36 proteins in 12 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 36%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15322131, PMID:18535009, PMID:18650403, PMID:21785130, PMID:24089436, locus:2034980; locus_type=protein_coding
AT1G18730.3	chr1:006460625	0.0	W/6460625-6460690,6460767-6460808,6460899-6461073,6461174-6461229,6461318-6461389,6461994-6462107	AT1G18730.3 CDS AT1G18730 ID=AT1G18730.3; Parent=AT1G18730; Name=AT1G18730.3; Note=NDH dependent flow 6; curator_summary=likely a subunit of the chloroplast NAD(P)H dehydrogenase complex%2C involved in PSI cyclic electron transport. Located on the thylakoid membrane. Mutant has impaired NAD(P)H dehydrogenase activity.; conf_class=2; symbol=PnsB4; Alias=NDF6, NDH dependent flow 6; full_name=Photosynthetic NDH subcomplex B 4; computational_description=NDH dependent flow 6 (NDF6)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: photosynthetic electron transport in photosystem I%3B LOCATED IN: chloroplast thylakoid membrane%2C chloroplast%2C NAD(P)H dehydrogenase complex (plastoquinone)%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B Has 36 Blast hits to 36 proteins in 12 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 36%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15322131, PMID:18535009, PMID:18650403, PMID:21785130, PMID:24089436, locus:2034980; locus_type=protein_coding
AT1G18730.4	chr1:006460625	0.0	W/6460625-6460690,6460767-6460808,6460899-6461073,6461174-6461229,6461318-6461464	AT1G18730.4 CDS AT1G18730 ID=AT1G18730.4; Parent=AT1G18730; Name=AT1G18730.4; Note=NDH dependent flow 6; curator_summary=likely a subunit of the chloroplast NAD(P)H dehydrogenase complex%2C involved in PSI cyclic electron transport. Located on the thylakoid membrane. Mutant has impaired NAD(P)H dehydrogenase activity.; conf_class=3; symbol=PnsB4; Alias=NDF6, NDH dependent flow 6; full_name=Photosynthetic NDH subcomplex B 4; computational_description=NDH dependent flow 6 (NDF6)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: photosynthetic electron transport in photosystem I%3B LOCATED IN: chloroplast thylakoid membrane%2C chloroplast%2C NAD(P)H dehydrogenase complex (plastoquinone)%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B Has 36 Blast hits to 36 proteins in 12 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 36%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15322131, PMID:18535009, PMID:18650403, PMID:21785130, PMID:24089436, locus:2034980; locus_type=protein_coding
AT1G18730.5	chr1:006460929	0.0	W/6460929-6461073,6461174-6461229,6461318-6461389,6461994-6462107	AT1G18730.5 CDS AT1G18730 ID=AT1G18730.5; Parent=AT1G18730; Name=AT1G18730.5; Note=NDH dependent flow 6; symbol=PnsB4; Alias=NDF6, NDH dependent flow 6; full_name=Photosynthetic NDH subcomplex B 4; curator_summary=likely a subunit of the chloroplast NAD(P)H dehydrogenase complex%2C involved in PSI cyclic electron transport. Located on the thylakoid membrane. Mutant has impaired NAD(P)H dehydrogenase activity.; computational_description=NDH dependent flow 6 (NDF6)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: photosynthetic electron transport in photosystem I%3B LOCATED IN: chloroplast thylakoid membrane%2C chloroplast%2C NAD(P)H dehydrogenase complex (plastoquinone)%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B Has 36 Blast hits to 36 proteins in 12 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 36%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=PMID:15322131, PMID:18535009, PMID:18650403, PMID:21785130, PMID:24089436, locus:2034980; locus_type=protein_coding
AT1G18735.1	chr1:006461367	0.0	C/6461367-6462327	AT1G18735.1 antisense_lncRNA AT1G18735 ID=AT1G18735.1; Parent=AT1G18735; curator_summary=Potential natural antisense gene%2C locus overlaps with AT1G18730; Dbxref=locus:4010713451; Name=AT1G18735.1; description=Natural antisense transcript overlaps with AT1G18730; Note=Natural antisense transcript overlaps with AT1G18730; locus_type=antisense_long_noncoding_rna
AT1G18740.1	chr1:006464125	0.0	W/6464125-6465273	AT1G18740.1 CDS AT1G18740 ID=AT1G18740.1; Parent=AT1G18740; Name=AT1G18740.1; Note=ROH1%2C putative (DUF793); conf_class=1; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF793) (TAIR:AT1G74450.1)%3B Has 167 Blast hits to 164 proteins in 20 species: Archae - 3%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 164%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12773641, PMID:17337630, PMID:18829981, PMID:20736450, locus:2034959; locus_type=protein_coding
AT1G18745.1	chr1:006465487	0.0	C/6465487-6466454	AT1G18745.1 ncRNA AT1G18745 ID=AT1G18745.1; Parent=AT1G18745; Name=AT1G18745.1; index=1; Dbxref=locus:6530298141; Note=other_RNA; locus_type=other_rna
AT1G05417.1	chr1:006465796	0.0	C/6465796-6465869	AT1G05417.1 snoRNA AT1G05417 ID=AT1G05417.1; Parent=AT1G05417; Name=AT1G05417.1; Alias=snoR122; Dbxref=PMID:19357091, PMID:22820990; locus_type=small_nucleolar_rna
AT1G05423.1	chr1:006465930	0.0	C/6465930-6466011	AT1G05423.1 snoRNA AT1G05423 ID=AT1G05423.1; Parent=AT1G05423; Name=AT1G05423.1; Alias=AtsnoR44-1b; Dbxref=PMID:12520043, PMID:22820990; locus_type=small_nucleolar_rna
AT1G05427.1	chr1:006466092	0.0	C/6466092-6466188	AT1G05427.1 snoRNA AT1G05427 ID=AT1G05427.1; Parent=AT1G05427; Name=AT1G05427.1; Alias=AtsnoR44-1a; Dbxref=PMID:12520043, PMID:22820990; locus_type=small_nucleolar_rna
AT1G05433.1	chr1:006466303	0.0	C/6466303-6466371	AT1G05433.1 snoRNA AT1G05433 ID=AT1G05433.1; Parent=AT1G05433; Name=AT1G05433.1; Alias=snoR115-2; Dbxref=PMID:19357091, PMID:22820990; locus_type=small_nucleolar_rna
AT1TE20970	chr1:006466829	0.0	W/6466829-6466976	AT1TE20970 transposable_element AT1TE20970 ID=AT1TE20970; Name=AT1TE20970; Alias=ATLINE1_4
AT1G18750.1	chr1:006467266	0.0	W/6467266-6467450,6467898-6467957,6468057-6468075,6468166-6468230,6468321-6468336,6468436-6468497,6468596-6468692,6468809-6468859,6468949-6469085,6469163-6469640	AT1G18750.1 CDS AT1G18750 ID=AT1G18750.1; Parent=AT1G18750; Name=AT1G18750.1; Note=AGAMOUS-like 65; curator_summary=Encodes a member of the MIKC (MADS box%2C Keratin binding domain%2C and C terminal domain containing )family of transcriptional regulators. AGL65 is expressed in pollen.It forms heterodimers with other MICK family members (AGL104). Involved in late stages of pollen development and pollen tube growth.; conf_class=3; symbol=AGL65; full_name=AGAMOUS-like 65; computational_description=AGAMOUS-like 65 (AGL65)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: pollen development%3B LOCATED IN: nucleus%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Transcription factor%2C MADS-box (InterPro:IPR002100)%3B BEST Arabidopsis thaliana protein match is: AGAMOUS-like 30 (TAIR:AT2G03060.2)%3B Has 6713 Blast hits to 6650 proteins in 771 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 853%3B Fungi - 361%3B Plants - 5148%3B Viruses - 0%3B Other Eukaryotes - 351 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:12698294, PMID:12837945, PMID:12949148, PMID:15805477, PMID:15908605, PMID:17071640, PMID:18775970, PMID:19211705, locus:2034949; locus_type=protein_coding
AT1G18750.3	chr1:006467266	0.0	W/6467266-6467450,6467898-6467957,6468057-6468075,6468166-6468230,6468321-6468497,6468596-6468692,6468809-6468859,6468949-6469085,6469163-6469601,6469687-6469698	AT1G18750.3 CDS AT1G18750 ID=AT1G18750.3; Parent=AT1G18750; Name=AT1G18750.3; Note=AGAMOUS-like 65; symbol=AGL65; full_name=AGAMOUS-like 65; curator_summary=Encodes a member of the MIKC (MADS box%2C Keratin binding domain%2C and C terminal domain containing )family of transcriptional regulators. AGL65 is expressed in pollen.It forms heterodimers with other MICK family members (AGL104). Involved in late stages of pollen development and pollen tube growth.; computational_description=AGAMOUS-like 65 (AGL65)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: pollen development%3B LOCATED IN: nucleus%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Transcription factor%2C MADS-box (InterPro:IPR002100)%3B BEST Arabidopsis thaliana protein match is: AGAMOUS-like 30 (TAIR:AT2G03060.2)%3B Has 6713 Blast hits to 6650 proteins in 771 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 853%3B Fungi - 361%3B Plants - 5148%3B Viruses - 0%3B Other Eukaryotes - 351 (source: NCBI BLink).; Dbxref=PMID:11118137, PMID:12698294, PMID:12837945, PMID:12949148, PMID:15805477, PMID:15908605, PMID:17071640, PMID:18775970, PMID:19211705, locus:2034949; locus_type=protein_coding
AT1G18750.4	chr1:006467266	0.0	W/6467266-6467450,6467898-6467957,6468057-6468075,6468166-6468230,6468321-6468336,6468436-6468497,6468596-6468692,6468809-6468859,6468949-6469085,6469163-6469601,6469687-6469698	AT1G18750.4 CDS AT1G18750 ID=AT1G18750.4; Parent=AT1G18750; Name=AT1G18750.4; Note=AGAMOUS-like 65; symbol=AGL65; full_name=AGAMOUS-like 65; Dbxref=PMID:11118137, PMID:12698294, PMID:12837945, PMID:12949148, PMID:15805477, PMID:15908605, PMID:17071640, PMID:18775970, PMID:19211705, locus:2034949; curator_summary=Encodes a member of the MIKC (MADS box%2C Keratin binding domain%2C and C terminal domain containing )family of transcriptional regulators. AGL65 is expressed in pollen.It forms heterodimers with other MICK family members (AGL104). Involved in late stages of pollen development and pollen tube growth.; computational_description=AGAMOUS-like 65 (AGL65)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: pollen development%3B LOCATED IN: nucleus%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Transcription factor%2C MADS-box (InterPro:IPR002100)%3B BEST Arabidopsis thaliana protein match is: AGAMOUS-like 30 (TAIR:AT2G03060.2)%3B Has 6713 Blast hits to 6650 proteins in 771 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 853%3B Fungi - 361%3B Plants - 5148%3B Viruses - 0%3B Other Eukaryotes - 351 (source: NCBI BLink).; locus_type=protein_coding
AT1G18750.2	chr1:006467404	0.0	W/6467404-6467450,6467898-6467957,6468057-6468075,6468166-6468230,6468321-6468336,6468436-6468497,6468596-6468692,6468809-6468859,6468949-6469085,6469163-6469601,6469687-6469698	AT1G18750.2 CDS AT1G18750 ID=AT1G18750.2; Parent=AT1G18750; Name=AT1G18750.2; Note=AGAMOUS-like 65; curator_summary=Encodes a member of the MIKC (MADS box%2C Keratin binding domain%2C and C terminal domain containing )family of transcriptional regulators. AGL65 is expressed in pollen.It forms heterodimers with other MICK family members (AGL104). Involved in late stages of pollen development and pollen tube growth.; conf_class=1; symbol=AGL65; full_name=AGAMOUS-like 65; computational_description=AGAMOUS-like 65 (AGL65)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: pollen development%3B LOCATED IN: nucleus%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Transcription factor%2C MADS-box (InterPro:IPR002100)%3B BEST Arabidopsis thaliana protein match is: AGAMOUS-like 30 (TAIR:AT2G03060.2)%3B Has 6713 Blast hits to 6650 proteins in 771 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 853%3B Fungi - 361%3B Plants - 5148%3B Viruses - 0%3B Other Eukaryotes - 351 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11118137, PMID:12698294, PMID:12837945, PMID:12949148, PMID:15805477, PMID:15908605, PMID:17071640, PMID:18775970, PMID:19211705, locus:2034949; locus_type=protein_coding
AT1G18750.5	chr1:006468298	0.0	W/6468298-6468336,6468436-6468497,6468596-6468692,6468809-6468859,6468949-6469085,6469163-6469601,6469687-6469698	AT1G18750.5 CDS AT1G18750 ID=AT1G18750.5; Parent=AT1G18750; Name=AT1G18750.5; Note=AGAMOUS-like 65; symbol=AGL65; full_name=AGAMOUS-like 65; curator_summary=Encodes a member of the MIKC (MADS box%2C Keratin binding domain%2C and C terminal domain containing )family of transcriptional regulators. AGL65 is expressed in pollen.It forms heterodimers with other MICK family members (AGL104). Involved in late stages of pollen development and pollen tube growth.; computational_description=AGAMOUS-like 65 (AGL65)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: pollen development%3B LOCATED IN: nucleus%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Transcription factor%2C MADS-box (InterPro:IPR002100)%3B BEST Arabidopsis thaliana protein match is: AGAMOUS-like 30 (TAIR:AT2G03060.2)%3B Has 6713 Blast hits to 6650 proteins in 771 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 853%3B Fungi - 361%3B Plants - 5148%3B Viruses - 0%3B Other Eukaryotes - 351 (source: NCBI BLink).; Dbxref=PMID:11118137, PMID:12698294, PMID:12837945, PMID:12949148, PMID:15805477, PMID:15908605, PMID:17071640, PMID:18775970, PMID:19211705, locus:2034949; locus_type=protein_coding
AT1G18750.6	chr1:006468361	0.0	W/6468361-6468497,6468596-6468692,6468809-6468859,6468949-6469085,6469163-6469601,6469687-6469698	AT1G18750.6 CDS AT1G18750 ID=AT1G18750.6; Parent=AT1G18750; Name=AT1G18750.6; Note=AGAMOUS-like 65; symbol=AGL65; full_name=AGAMOUS-like 65; curator_summary=Encodes a member of the MIKC (MADS box%2C Keratin binding domain%2C and C terminal domain containing )family of transcriptional regulators. AGL65 is expressed in pollen.It forms heterodimers with other MICK family members (AGL104). Involved in late stages of pollen development and pollen tube growth.; computational_description=AGAMOUS-like 65 (AGL65)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: pollen development%3B LOCATED IN: nucleus%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Transcription factor%2C MADS-box (InterPro:IPR002100)%3B BEST Arabidopsis thaliana protein match is: AGAMOUS-like 30 (TAIR:AT2G03060.2)%3B Has 6713 Blast hits to 6650 proteins in 771 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 853%3B Fungi - 361%3B Plants - 5148%3B Viruses - 0%3B Other Eukaryotes - 351 (source: NCBI BLink).; Dbxref=PMID:11118137, PMID:12698294, PMID:12837945, PMID:12949148, PMID:15805477, PMID:15908605, PMID:17071640, PMID:18775970, PMID:19211705, locus:2034949; locus_type=protein_coding
AT1TE20980	chr1:006470399	0.0	C/6470399-6470472	AT1TE20980 transposable_element AT1TE20980 ID=AT1TE20980; Name=AT1TE20980; Alias=RathE1_cons
AT1G18760.1	chr1:006471150	0.0	C/6471150-6471824	AT1G18760.1 CDS AT1G18760 ID=AT1G18760.1; Parent=AT1G18760; Name=AT1G18760.1; Note=Zinc finger%2C C3HC4 type (RING finger) family protein; conf_class=1; computational_description=Zinc finger%2C C3HC4 type (RING finger) family protein%3B FUNCTIONS IN: zinc ion binding%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%2C Ubiquitin interacting motif (InterPro:IPR003903)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G13228.1)%3B Has 8667 Blast hits to 8640 proteins in 280 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2366%3B Fungi - 656%3B Plants - 4333%3B Viruses - 89%3B Other Eukaryotes - 1223 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11983057, PMID:15644464, PMID:16339806, locus:2034939; locus_type=protein_coding
AT1G18770.1	chr1:006473370	0.0	C/6473370-6473592,6473951-6474048	AT1G18770.1 CDS AT1G18770 ID=AT1G18770.1; Parent=AT1G18770; Name=AT1G18770.1; Note=RING/U-box superfamily protein; conf_class=10; computational_description=RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: Zinc finger%2C C3HC4 type (RING finger) family protein (TAIR:AT1G18760.1)%3B Has 8585 Blast hits to 8561 proteins in 274 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2475%3B Fungi - 605%3B Plants - 4263%3B Viruses - 82%3B Other Eukaryotes - 1160 (source: NCBI BLink).; Dbxref=PMID:11983057, locus:2034934; locus_type=protein_coding
AT1G18773.1	chr1:006474948	0.0	W/6474948-6475019,6475108-6475215,6475381-6475398	AT1G18773.1 CDS AT1G18773 ID=AT1G18773.1; Parent=AT1G18773; Name=AT1G18773.1; Note=acyl thioesterase-like protein; conf_class=2; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B BEST Arabidopsis thaliana protein match is: carboxylesterases (TAIR:AT4G22300.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:4515102546; locus_type=protein_coding
AT1G18773.2	chr1:006474948	0.0	W/6474948-6475019,6475108-6475221	AT1G18773.2 CDS AT1G18773 ID=AT1G18773.2; Parent=AT1G18773; Name=AT1G18773.2; Note=acyl thioesterase-like protein; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B BEST Arabidopsis thaliana protein match is: carboxylesterases (TAIR:AT4G22300.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=locus:4515102546; locus_type=protein_coding
AT1G18773.3	chr1:006474948	0.0	W/6474948-6475019,6475108-6475215,6475364-6475372	AT1G18773.3 CDS AT1G18773 ID=AT1G18773.3; Parent=AT1G18773; Name=AT1G18773.3; Note=acyl thioesterase-like protein; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B BEST Arabidopsis thaliana protein match is: carboxylesterases (TAIR:AT4G22300.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=locus:4515102546; locus_type=protein_coding
AT1G18773.4	chr1:006474948	0.0	W/6474948-6475019,6475108-6475215,6475613-6475654	AT1G18773.4 CDS AT1G18773 ID=AT1G18773.4; Parent=AT1G18773; Name=AT1G18773.4; Note=acyl thioesterase-like protein; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B BEST Arabidopsis thaliana protein match is: carboxylesterases (TAIR:AT4G22300.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=locus:4515102546; locus_type=protein_coding
AT1G18780.1	chr1:006476258	0.0	C/6476258-6477235	AT1G18780.1 CDS AT1G18780 ID=AT1G18780.1; Parent=AT1G18780; Name=AT1G18780.1; Note=RING/U-box superfamily protein; conf_class=1; computational_description=RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G29840.1)%3B Has 8581 Blast hits to 8560 proteins in 267 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2597%3B Fungi - 649%3B Plants - 4074%3B Viruses - 26%3B Other Eukaryotes - 1235 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11983057, PMID:15644464, locus:2034924; locus_type=protein_coding
AT1TE21010	chr1:006478132	0.0	W/6478132-6478451	AT1TE21010 transposable_element AT1TE21010 ID=AT1TE21010; Name=AT1TE21010; Alias=ATCOPIA35
AT1G18790.1	chr1:006478851	0.0	C/6478851-6479111,6479328-6479644,6479717-6479850,6479946-6480043	AT1G18790.1 CDS AT1G18790 ID=AT1G18790.1; Parent=AT1G18790; Name=AT1G18790.1; Note=RWP-RK domain-containing protein; conf_class=9; symbol=RKD1; Alias=AtRKD1, URP5, UAS-TAGGED ROOT PATTERNING5; full_name=RWP-RK domain containing 1; computational_description=RWP-RK domain-containing protein%3B CONTAINS InterPro DOMAIN/s: Plant regulator RWP-RK (InterPro:IPR003035)%3B BEST Arabidopsis thaliana protein match is: RWP-RK domain-containing protein (TAIR:AT1G74480.1)%3B Has 558 Blast hits to 554 proteins in 54 species: Archae - 0%3B Bacteria - 12%3B Metazoa - 59%3B Fungi - 0%3B Plants - 419%3B Viruses - 0%3B Other Eukaryotes - 68 (source: NCBI BLink).; conf_rating=*; Dbxref=PMID:11118137, PMID:21457369, PMID:23057675, locus:2035000; locus_type=protein_coding
AT1G18800.1	chr1:006481466	0.0	C/6481466-6481525,6481747-6481794,6481891-6481950,6482037-6482100,6482223-6482284,6482377-6482490,6482614-6482685,6482774-6482824,6482920-6483042,6483347-6483463	AT1G18800.1 CDS AT1G18800 ID=AT1G18800.1; Parent=AT1G18800; Name=AT1G18800.1; Note=NAP1-related protein 2; curator_summary=Double nrp1-1 nrp2-1 mutants show arrest of cell cycle progression at G2/M and disordered cellular organization occurred in root tips. Localize in the nucleus and can form homomeric and heteromeric protein complexes with NRP1. Bind histones Histone2A and Histone2B and associate with chromatin in vivo.; conf_class=2; symbol=NRP2; full_name=NAP1-related protein 2; computational_description=NAP1-related protein 2 (NRP2)%3B FUNCTIONS IN: chromatin binding%2C histone binding%2C DNA binding%3B INVOLVED IN: cell proliferation%2C cell differentiation%2C nucleosome assembly%2C lateral root formation%3B LOCATED IN: nucleus%2C cytoplasm%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Nucleosome assembly protein (NAP) (InterPro:IPR002164)%3B BEST Arabidopsis thaliana protein match is: NAP1-related protein 1 (TAIR:AT1G74560.2)%3B Has 4380 Blast hits to 3595 proteins in 373 species: Archae - 7%3B Bacteria - 141%3B Metazoa - 1827%3B Fungi - 714%3B Plants - 336%3B Viruses - 93%3B Other Eukaryotes - 1262 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15469496, PMID:16679420, PMID:17122067, PMID:19704743, PMID:22534127, locus:2034995; locus_type=protein_coding
AT1TE21020	chr1:006481931	0.0	C/6481931-6481979	AT1TE21020 transposable_element AT1TE21020 ID=AT1TE21020; Name=AT1TE21020; Alias=VANDAL4
AT1TE21025	chr1:006483605	0.0	W/6483605-6484442	AT1TE21025 transposable_element AT1TE21025 ID=AT1TE21025; Name=AT1TE21025; Alias=HELITRONY3
AT1G18810.1	chr1:006485709	0.0	C/6485709-6486872	AT1G18810.1 CDS AT1G18810 ID=AT1G18810.1; Parent=AT1G18810; Name=AT1G18810.1; Note=phytochrome kinase substrate-like protein; conf_class=1; computational_description=phytochrome kinase substrate-related%3B BEST Arabidopsis thaliana protein match is: phytochrome kinase substrate 1 (TAIR:AT2G02950.1)%3B Has 458 Blast hits to 394 proteins in 45 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 60%3B Fungi - 9%3B Plants - 109%3B Viruses - 2%3B Other Eukaryotes - 276 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:18390804, PMID:18650403, locus:2035010; locus_type=protein_coding
AT1G18820.1	chr1:006488655	0.0	W/6488655-6488735	AT1G18820.1 tRNA AT1G18820 ID=AT1G18820.1; Parent=AT1G18820; Note=tRNA-Leu; computational_description=tRNA-Leu (anticodon: CAG); Dbxref=PMID:8980477, PMID:23066098, PMID:8980477, locus:3691105; Name=AT1G18820.1; locus_type=pre_trna
AT1G18830.1	chr1:006489309	0.0	W/6489309-6489604,6489693-6489747,6489833-6489949,6490031-6490127,6490224-6490260,6490357-6490456,6490542-6490599,6490678-6490775,6490883-6491002,6491237-6491260,6491347-6491487,6491574-6491701,6491797-6492196,6492287-6492379,6492486-6492671,6492760-6492973,6493067-6493128,6493208-6493342,6493430-6493640,6493773-6494017,6494126-6494218	AT1G18830.1 CDS AT1G18830 ID=AT1G18830.1; Parent=AT1G18830; Name=AT1G18830.1; Note=Transducin/WD40 repeat-like superfamily protein; conf_class=6; Alias=SEC31A; computational_description=Transducin/WD40 repeat-like superfamily protein%3B FUNCTIONS IN: nucleotide binding%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782)%2C WD40 repeat%2C conserved site (InterPro:IPR019775)%2C WD40 repeat (InterPro:IPR001680)%2C WD40 repeat-like-containing domain (InterPro:IPR011046)%2C WD40-repeat-containing domain (InterPro:IPR017986)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C WD40 repeat%2C subgroup (InterPro:IPR019781)%3B BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT3G63460.1)%3B Has 13982 Blast hits to 10894 proteins in 455 species: Archae - 16%3B Bacteria - 1751%3B Metazoa - 4952%3B Fungi - 3516%3B Plants - 1949%3B Viruses - 0%3B Other Eukaryotes - 1798 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:15236667, PMID:16412086, PMID:20736450, PMID:24280388, locus:2034990; locus_type=protein_coding
AT1G18830.2	chr1:006489309	0.0	W/6489309-6489604,6489693-6489747,6489833-6489949,6490031-6490127,6490224-6490260,6490357-6490456,6490542-6490599,6490678-6490775,6490883-6491002,6491237-6491279,6491384-6491487,6491574-6491701,6491797-6492196,6492287-6492379,6492486-6492671,6492760-6492973,6493067-6493128,6493208-6493342,6493430-6493640,6493773-6494017,6494126-6494218	AT1G18830.2 CDS AT1G18830 ID=AT1G18830.2; Parent=AT1G18830; Name=AT1G18830.2; Note=Transducin/WD40 repeat-like superfamily protein; Alias=SEC31A; computational_description=Transducin/WD40 repeat-like superfamily protein%3B FUNCTIONS IN: nucleotide binding%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782)%2C WD40 repeat%2C conserved site (InterPro:IPR019775)%2C WD40 repeat (InterPro:IPR001680)%2C WD40 repeat-like-containing domain (InterPro:IPR011046)%2C WD40-repeat-containing domain (InterPro:IPR017986)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C WD40 repeat%2C subgroup (InterPro:IPR019781)%3B BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT3G63460.1)%3B Has 13982 Blast hits to 10894 proteins in 455 species: Archae - 16%3B Bacteria - 1751%3B Metazoa - 4952%3B Fungi - 3516%3B Plants - 1949%3B Viruses - 0%3B Other Eukaryotes - 1798 (source: NCBI BLink).; Dbxref=PMID:15236667, PMID:16412086, PMID:20736450, PMID:24280388, locus:2034990; locus_type=protein_coding
AT1G18830.3	chr1:006489309	0.0	W/6489309-6489604,6489693-6489747,6489833-6489949,6490031-6490127,6490224-6490260,6490357-6490456,6490542-6490599,6490678-6490775,6490883-6491002,6491237-6491279,6491384-6491487,6491574-6491701,6491797-6492196,6492287-6492379,6492486-6492671,6492760-6492973,6493067-6493128,6493208-6493342,6493430-6493640,6493773-6494017,6494126-6494218	AT1G18830.3 CDS AT1G18830 ID=AT1G18830.3; Parent=AT1G18830; Name=AT1G18830.3; Note=Transducin/WD40 repeat-like superfamily protein; Alias=SEC31A; computational_description=Transducin/WD40 repeat-like superfamily protein%3B FUNCTIONS IN: nucleotide binding%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782)%2C WD40 repeat%2C conserved site (InterPro:IPR019775)%2C WD40 repeat (InterPro:IPR001680)%2C WD40 repeat-like-containing domain (InterPro:IPR011046)%2C WD40-repeat-containing domain (InterPro:IPR017986)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C WD40 repeat%2C subgroup (InterPro:IPR019781)%3B BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT3G63460.1)%3B Has 13982 Blast hits to 10894 proteins in 455 species: Archae - 16%3B Bacteria - 1751%3B Metazoa - 4952%3B Fungi - 3516%3B Plants - 1949%3B Viruses - 0%3B Other Eukaryotes - 1798 (source: NCBI BLink).; Dbxref=PMID:15236667, PMID:16412086, PMID:20736450, PMID:24280388, locus:2034990; locus_type=protein_coding
AT1G18835.1	chr1:006496106	0.0	C/6496106-6496372	AT1G18835.1 CDS AT1G18835 ID=AT1G18835.1; Parent=AT1G18835; Name=AT1G18835.1; Note=mini zinc finger; curator_summary=Encodes a small zinc %26#64257%3Bnger protein whose overexpression induces ectopic meristem formation on leaf margins.; conf_class=1; symbol=MIF3; full_name=mini zinc finger 3; computational_description=mini zinc finger (MIF3)%3B CONTAINS InterPro DOMAIN/s: ZF-HD homeobox protein%2C Cys/His-rich dimerisation domain (InterPro:IPR006456)%3B BEST Arabidopsis thaliana protein match is: mini zinc finger 1 (TAIR:AT1G74660.1)%3B Has 420 Blast hits to 420 proteins in 28 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 420%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16412086, PMID:18713354, PMID:20032078, PMID:21455630, locus:4010713452; locus_type=protein_coding
AT1G05443.1	chr1:006500050	0.0	W/6500050-6500381	AT1G05443.1 lnc_RNA AT1G05443 ID=AT1G05443.1; Parent=AT1G05443; Name=AT1G05443.1; locus_type=long_noncoding_rna
AT1G18840.1	chr1:006501068	0.0	C/6501068-6501099,6501193-6502222,6502303-6502383,6502469-6502675,6502793-6503080,6503355-6503435	AT1G18840.1 CDS AT1G18840 ID=AT1G18840.1; Parent=AT1G18840; Name=AT1G18840.1; Note=IQ-domain 30; conf_class=2; symbol=IQD30; full_name=IQ-domain 30; computational_description=IQ-domain 30 (IQD30)%3B FUNCTIONS IN: calmodulin binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: vacuole%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048)%3B BEST Arabidopsis thaliana protein match is: IQ-domain 31 (TAIR:AT1G74690.1)%3B Has 3694 Blast hits to 2988 proteins in 424 species: Archae - 6%3B Bacteria - 439%3B Metazoa - 902%3B Fungi - 265%3B Plants - 843%3B Viruses - 14%3B Other Eukaryotes - 1225 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15010618, PMID:16368012, PMID:16412086, PMID:18650403, locus:2034929; locus_type=protein_coding
AT1G18840.2	chr1:006501068	0.0	C/6501068-6501099,6501193-6502222,6502303-6502383,6502469-6502675,6502793-6503080,6503355-6503435	AT1G18840.2 CDS AT1G18840 ID=AT1G18840.2; Parent=AT1G18840; Name=AT1G18840.2; Note=IQ-domain 30; conf_class=2; symbol=IQD30; full_name=IQ-domain 30; computational_description=IQ-domain 30 (IQD30)%3B FUNCTIONS IN: calmodulin binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: vacuole%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048)%3B BEST Arabidopsis thaliana protein match is: IQ-domain 31 (TAIR:AT1G74690.1)%3B Has 3694 Blast hits to 2988 proteins in 424 species: Archae - 6%3B Bacteria - 439%3B Metazoa - 902%3B Fungi - 265%3B Plants - 843%3B Viruses - 14%3B Other Eukaryotes - 1225 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15010618, PMID:16368012, PMID:16412086, PMID:18650403, locus:2034929; locus_type=protein_coding
AT1G18840.3	chr1:006501068	0.0	C/6501068-6501099,6501193-6502222,6502303-6502383,6502469-6502675,6502793-6503080,6503355-6503435	AT1G18840.3 CDS AT1G18840 ID=AT1G18840.3; Parent=AT1G18840; Name=AT1G18840.3; Note=IQ-domain 30; symbol=IQD30; full_name=IQ-domain 30; Dbxref=PMID:15010618, PMID:16368012, PMID:16412086, PMID:18650403, locus:2034929; computational_description=IQ-domain 30 (IQD30)%3B FUNCTIONS IN: calmodulin binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: vacuole%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048)%3B BEST Arabidopsis thaliana protein match is: IQ-domain 31 (TAIR:AT1G74690.1)%3B Has 3694 Blast hits to 2988 proteins in 424 species: Archae - 6%3B Bacteria - 439%3B Metazoa - 902%3B Fungi - 265%3B Plants - 843%3B Viruses - 14%3B Other Eukaryotes - 1225 (source: NCBI BLink).; locus_type=protein_coding
AT1G18850.1	chr1:006504928	0.0	C/6504928-6506127	AT1G18850.1 CDS AT1G18850 ID=AT1G18850.1; Parent=AT1G18850; Name=AT1G18850.1; Note=hypothetical protein; conf_class=2; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: nucleolus%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B Has 40 Blast hits to 40 proteins in 13 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 40%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2034969; locus_type=protein_coding
AT1G05447.1	chr1:006508776	0.0	C/6508776-6509012	AT1G05447.1 lnc_RNA AT1G05447 ID=AT1G05447.1; Parent=AT1G05447; Name=AT1G05447.1; locus_type=long_noncoding_rna
AT1G18860.1	chr1:006508907	0.0	W/6508907-6509029,6509473-6510060,6510247-6510360,6510448-6511209	AT1G18860.1 CDS AT1G18860 ID=AT1G18860.1; Parent=AT1G18860; Name=AT1G18860.1; Note=WRKY DNA-binding protein 61; curator_summary=member of WRKY Transcription Factor%3B Group II-b; conf_class=2; symbol=WRKY61; Alias=ATWRKY61, WRKY DNA-BINDING PROTEIN 61; full_name=WRKY DNA-binding protein 61; computational_description=WRKY DNA-binding protein 61 (WRKY61)%3B CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657)%3B BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 72 (TAIR:AT5G15130.1)%3B Has 5252 Blast hits to 3559 proteins in 289 species: Archae - 0%3B Bacteria - 31%3B Metazoa - 146%3B Fungi - 97%3B Plants - 3463%3B Viruses - 1%3B Other Eukaryotes - 1514 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10785665, PMID:11118137, locus:2034964; locus_type=protein_coding
AT1TE21120	chr1:006513628	0.0	C/6513628-6514347	AT1TE21120 transposable_element AT1TE21120 ID=AT1TE21120; Name=AT1TE21120; Alias=HELITRONY1E
AT1TE21125	chr1:006514348	0.0	C/6514348-6514399	AT1TE21125 transposable_element AT1TE21125 ID=AT1TE21125; Name=AT1TE21125; Alias=ATREP10D
AT1TE21130	chr1:006514400	0.0	W/6514400-6515296,6515297-6515317	AT1TE21130 transposable_element AT1TE21130 ID=AT1TE21130; Name=AT1TE21130; Alias=ATREP1
AT1TE21135	chr1:006515318	0.0	W/6515318-6515466	AT1TE21135 transposable_element AT1TE21135 ID=AT1TE21135; Name=AT1TE21135; Alias=HELITRONY1E
AT1G18870.1	chr1:006515486	0.0	W/6515486-6515611,6515722-6515910,6516504-6516739,6516833-6516950,6517030-6517146,6517226-6517372,6517450-6517524,6517625-6517693,6517790-6517908,6518004-6518061,6518228-6518338,6518542-6518626,6518761-6518858,6518941-6519033,6519129-6519176	AT1G18870.1 CDS AT1G18870 ID=AT1G18870.1; Parent=AT1G18870; Name=AT1G18870.1; Note=isochorismate synthase 2; curator_summary=Encodes a protein with isochorismate synthase activity involved in phylloquinone biosynthesis. Mutant studies of this gene's function suggest that its function is redundant with that of ICS1 (AT1G7410).; conf_class=2; symbol=ICS2; Alias=ATICS2, ARABIDOPSIS ISOCHORISMATE SYNTHASE 2; full_name=isochorismate synthase 2; computational_description=isochorismate synthase 2 (ICS2)%3B CONTAINS InterPro DOMAIN/s: Chorismate binding%2C C-terminal (InterPro:IPR015890)%2C ADC synthase (InterPro:IPR005801)%2C Isochorismate synthase (InterPro:IPR004561)%3B BEST Arabidopsis thaliana protein match is: ADC synthase superfamily protein (TAIR:AT1G74710.1)%3B Has 14372 Blast hits to 14368 proteins in 2522 species: Archae - 246%3B Bacteria - 10572%3B Metazoa - 5%3B Fungi - 239%3B Plants - 212%3B Viruses - 0%3B Other Eukaryotes - 3098 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12609038, PMID:12777052, PMID:15272873, PMID:15842617, PMID:15870097, PMID:16617180, PMID:16603661, PMID:16720694, PMID:17061125, PMID:17533111, PMID:20736450, PMID:23959884, locus:2034954; locus_type=protein_coding
AT1G18870.3	chr1:006515486	0.0	W/6515486-6515611,6515722-6515910,6516504-6516739,6516833-6516950,6517030-6517146,6517226-6517372,6517450-6517524,6517625-6517693,6517790-6517908,6518242-6518338,6518542-6518626,6518761-6518858,6518941-6519033,6519129-6519176	AT1G18870.3 CDS AT1G18870 ID=AT1G18870.3; Parent=AT1G18870; Name=AT1G18870.3; Note=isochorismate synthase 2; symbol=ICS2; Alias=ATICS2, ARABIDOPSIS ISOCHORISMATE SYNTHASE 2; full_name=isochorismate synthase 2; curator_summary=Encodes a protein with isochorismate synthase activity involved in phylloquinone biosynthesis. Mutant studies of this gene's function suggest that its function is redundant with that of ICS1 (AT1G7410).; computational_description=isochorismate synthase 2 (ICS2)%3B CONTAINS InterPro DOMAIN/s: Chorismate binding%2C C-terminal (InterPro:IPR015890)%2C ADC synthase (InterPro:IPR005801)%2C Isochorismate synthase (InterPro:IPR004561)%3B BEST Arabidopsis thaliana protein match is: ADC synthase superfamily protein (TAIR:AT1G74710.1)%3B Has 14372 Blast hits to 14368 proteins in 2522 species: Archae - 246%3B Bacteria - 10572%3B Metazoa - 5%3B Fungi - 239%3B Plants - 212%3B Viruses - 0%3B Other Eukaryotes - 3098 (source: NCBI BLink).; Dbxref=PMID:12609038, PMID:12777052, PMID:15272873, PMID:15842617, PMID:15870097, PMID:16617180, PMID:16603661, PMID:16720694, PMID:17061125, PMID:17533111, PMID:20736450, PMID:23959884, locus:2034954; locus_type=protein_coding
AT1G18870.2	chr1:006515746	0.0	W/6515746-6515910,6516504-6516739,6516833-6516950,6517030-6517146,6517226-6517372,6517450-6517524,6517625-6517693,6517790-6517908,6518004-6518061,6518228-6518338,6518542-6518626,6518761-6518858,6518941-6519033,6519129-6519176	AT1G18870.2 CDS AT1G18870 ID=AT1G18870.2; Parent=AT1G18870; Name=AT1G18870.2; Note=isochorismate synthase 2; curator_summary=Encodes a protein with isochorismate synthase activity involved in phylloquinone biosynthesis. Mutant studies of this gene's function suggest that its function is redundant with that of ICS1 (AT1G7410).; conf_class=2; symbol=ICS2; Alias=ATICS2, ARABIDOPSIS ISOCHORISMATE SYNTHASE 2; full_name=isochorismate synthase 2; computational_description=isochorismate synthase 2 (ICS2)%3B CONTAINS InterPro DOMAIN/s: Chorismate binding%2C C-terminal (InterPro:IPR015890)%2C ADC synthase (InterPro:IPR005801)%2C Isochorismate synthase (InterPro:IPR004561)%3B BEST Arabidopsis thaliana protein match is: ADC synthase superfamily protein (TAIR:AT1G74710.1)%3B Has 14372 Blast hits to 14368 proteins in 2522 species: Archae - 246%3B Bacteria - 10572%3B Metazoa - 5%3B Fungi - 239%3B Plants - 212%3B Viruses - 0%3B Other Eukaryotes - 3098 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12609038, PMID:12777052, PMID:15272873, PMID:15842617, PMID:15870097, PMID:16617180, PMID:16603661, PMID:16720694, PMID:17061125, PMID:17533111, PMID:20736450, PMID:23959884, locus:2034954; locus_type=protein_coding
AT1G18871.1	chr1:006519309	0.0	C/6519309-6519485	AT1G18871.1 CDS AT1G18871 ID=AT1G18871.1; Parent=AT1G18871; Name=AT1G18871.1; Note=hypothetical protein; conf_class=1; computational_description=unknown protein%3B LOCATED IN: endomembrane system%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:17395691, locus:4515102547; locus_type=protein_coding
AT1G18880.1	chr1:006520800	0.0	W/6520800-6520890,6521395-6521612,6521710-6522263,6522341-6523241	AT1G18880.1 CDS AT1G18880 ID=AT1G18880.1; Parent=AT1G18880; Name=AT1G18880.1; Note=Major facilitator superfamily protein; curator_summary=Encodes a low-af%26#64257%3Bnity plasma membrane nitrate transporter expressed in the companion cells of root phloem.; conf_class=2; symbol=NRT1.9; Alias=AtNPF2.9, NPF2.9, NRT1/ PTR family 2.9; full_name=nitrate transporter 1.9; computational_description=Major facilitator superfamily protein%3B FUNCTIONS IN: transporter activity%3B INVOLVED IN: oligopeptide transport%3B LOCATED IN: membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109)%2C Major facilitator superfamily%2C general substrate transporter (InterPro:IPR016196)%3B BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G62680.1)%3B Has 4002 Blast hits to 3797 proteins in 617 species: Archae - 0%3B Bacteria - 698%3B Metazoa - 561%3B Fungi - 400%3B Plants - 2175%3B Viruses - 0%3B Other Eukaryotes - 168 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14730065, PMID:17481610, PMID:20501909, PMID:20736450, PMID:21571952, locus:2035005; locus_type=protein_coding
AT1G18879.1	chr1:006520941	0.0	W/6520941-6521124	AT1G18879.1 miRNA_primary_transcript AT1G18879 ID=AT1G18879.1; Parent=AT1G18879; Alias=p_MI0005393; Name=ath-MIR837; symbol=MIR837A; curator_summary=Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: AUCAGUUUCUUGUUCGUUUCA; Note=microRNA ath-MIR837 precursor; full_name=microRNA837A; Dbxref=locus:4515102548, locus:4515102548; locus_type=mirna
ath-miR837-5p	chr1:006520995	0.0	W/6520995-6521015	ath-miR837-5p miRNA ath-miR837-5p ID=ath-miR837-5p; Alias=MIMAT0004258; Name=ath-miR837-5p; Derives_from=AT1G18879.1; Note=microRNA ath-miR837-5p; computational_description=mature miRNA accession:MIMAT0004258
ath-miR837-3p	chr1:006521053	0.0	W/6521053-6521073	ath-miR837-3p miRNA ath-miR837-3p ID=ath-miR837-3p; Alias=MIMAT0004259; Name=ath-miR837-3p; Derives_from=AT1G18879.1; Note=microRNA ath-miR837-3p; computational_description=mature miRNA accession:MIMAT0004259
AT1G18890.1	chr1:006523468	0.0	C/6523468-6523641,6523759-6523989,6524082-6524249,6524358-6524473,6524563-6524715,6524808-6524951,6525085-6525736	AT1G18890.1 CDS AT1G18890 ID=AT1G18890.1; Parent=AT1G18890; Name=AT1G18890.1; Note=calcium-dependent protein kinase 1; curator_summary=encodes a calcium-dependent protein kinase whose gene expression is induced by dehydration and high salt. Kinase activity could not be detected in vitro.; conf_class=2; symbol=CDPK1; Alias=ATCDPK1, calcium-dependent protein kinase 1, AtCPK10, CPK10; full_name=calcium-dependent protein kinase 1; computational_description=calcium-dependent protein kinase 1 (CDPK1)%3B FUNCTIONS IN: calmodulin-dependent protein kinase activity%2C protein kinase activity%2C kinase activity%3B INVOLVED IN: response to water deprivation%2C response to salt stress%2C protein amino acid phosphorylation%2C N-terminal protein myristoylation%2C abscisic acid mediated signaling pathway%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C EF-Hand 1%2C calcium-binding site (InterPro:IPR018247)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C EF-hand-like domain (InterPro:IPR011992)%2C Calcium-binding EF-hand (InterPro:IPR002048)%2C EF-hand (InterPro:IPR018248)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C EF-HAND 2 (InterPro:IPR018249)%2C Calcium-dependent protein kinase (InterPro:IPR020642)%2C Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636)%3B BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase 30 (TAIR:AT1G74740.1)%3B Has 125370 Blast hits to 119826 proteins in 3847 species: Archae - 176%3B Bacteria - 14154%3B Metazoa - 46310%3B Fungi - 16874%3B Plants - 24900%3B Viruses - 438%3B Other Eukaryotes - 22518 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:8943201, PMID:8078458, PMID:12102506, PMID:12068094, PMID:12169696, PMID:12372144, PMID:12805596, PMID:12912986, PMID:14576160, PMID:14557048, PMID:15276435, PMID:16843620, PMID:16758442, PMID:17032064, PMID:17101982, PMID:17158582, PMID:17541706, PMID:17921317, PMID:18650403, PMID:20736450, PMID:20805328, PMID:21477822, PMID:21994053, PMID:22645532, PMID:22827269, locus:2011201; locus_type=protein_coding
AT1G05453.1	chr1:006525324	0.0	W/6525324-6525994	AT1G05453.1 antisense_lncRNA AT1G05453 ID=AT1G05453.1; Parent=AT1G05453; Name=AT1G05453.1; description=Natural antisense transcript overlaps with AT1G18890; Note=Natural antisense transcript overlaps with AT1G18890; locus_type=antisense_long_noncoding_rna
AT1G18900.1	chr1:006529778	0.0	W/6529778-6532360	AT1G18900.1 CDS AT1G18900 ID=AT1G18900.1; Parent=AT1G18900; Name=AT1G18900.1; Note=Pentatricopeptide repeat (PPR) superfamily protein; conf_class=2; computational_description=Pentatricopeptide repeat (PPR) superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%2C Smr protein/MutS2 C-terminal (InterPro:IPR002625)%3B BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G74750.1)%3B Has 53451 Blast hits to 14715 proteins in 301 species: Archae - 4%3B Bacteria - 60%3B Metazoa - 600%3B Fungi - 788%3B Plants - 50339%3B Viruses - 0%3B Other Eukaryotes - 1660 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16632643, locus:2011211; locus_type=protein_coding
AT1G18900.2	chr1:006529778	0.0	W/6529778-6532360	AT1G18900.2 CDS AT1G18900 ID=AT1G18900.2; Parent=AT1G18900; Name=AT1G18900.2; Note=Pentatricopeptide repeat (PPR) superfamily protein; conf_class=2; computational_description=Pentatricopeptide repeat (PPR) superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%2C Smr protein/MutS2 C-terminal (InterPro:IPR002625)%3B BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G74750.1)%3B Has 53451 Blast hits to 14715 proteins in 301 species: Archae - 4%3B Bacteria - 60%3B Metazoa - 600%3B Fungi - 788%3B Plants - 50339%3B Viruses - 0%3B Other Eukaryotes - 1660 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16632643, locus:2011211; locus_type=protein_coding
AT1G18900.3	chr1:006529778	0.0	W/6529778-6532336,6532440-6532541	AT1G18900.3 CDS AT1G18900 ID=AT1G18900.3; Parent=AT1G18900; Name=AT1G18900.3; Note=Pentatricopeptide repeat (PPR) superfamily protein; conf_class=6; computational_description=Pentatricopeptide repeat (PPR) superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%2C Smr protein/MutS2 C-terminal (InterPro:IPR002625)%3B BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G74750.1)%3B Has 53451 Blast hits to 14715 proteins in 301 species: Archae - 4%3B Bacteria - 60%3B Metazoa - 600%3B Fungi - 788%3B Plants - 50339%3B Viruses - 0%3B Other Eukaryotes - 1660 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:16632643, locus:2011211; locus_type=protein_coding
AT1G18900.4	chr1:006529778	0.0	W/6529778-6532360	AT1G18900.4 CDS AT1G18900 ID=AT1G18900.4; Parent=AT1G18900; Name=AT1G18900.4; Note=Pentatricopeptide repeat (PPR) superfamily protein; Dbxref=PMID:16632643, locus:2011211; computational_description=Pentatricopeptide repeat (PPR) superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%2C Smr protein/MutS2 C-terminal (InterPro:IPR002625)%3B BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G74750.1)%3B Has 53451 Blast hits to 14715 proteins in 301 species: Archae - 4%3B Bacteria - 60%3B Metazoa - 600%3B Fungi - 788%3B Plants - 50339%3B Viruses - 0%3B Other Eukaryotes - 1660 (source: NCBI BLink).; locus_type=protein_coding
AT1G18910.1	chr1:006532706	0.0	C/6532706-6532807,6532900-6532971,6533148-6533207,6533304-6533538,6533632-6533766,6533852-6534073,6534212-6535854,6535978-6536203,6536316-6536671,6536753-6536947,6537045-6537263,6537694-6537993	AT1G18910.1 CDS AT1G18910 ID=AT1G18910.1; Parent=AT1G18910; Name=AT1G18910.1; Note=zinc ion binding protein; conf_class=4; computational_description=zinc ion binding%3Bzinc ion binding%3B FUNCTIONS IN: zinc ion binding%3B EXPRESSED IN: 15 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C CTCHY-type (InterPro:IPR017921)%2C Zinc finger%2C CHY-type (InterPro:IPR008913)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C Haemerythrin/HHE cation-binding motif (InterPro:IPR012312)%3B BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT1G74770.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:11983057, PMID:15539473, locus:2011266; locus_type=protein_coding
AT1TE21210	chr1:006538419	0.0	W/6538419-6540011,6539996-6543539	AT1TE21210 transposable_element AT1TE21210 ID=AT1TE21210; Name=AT1TE21210; Alias=META1
AT1G18930.1	chr1:006542872	0.0	W/6542872-6543247	AT1G18930.1 CDS AT1G18930 ID=AT1G18930.1; Parent=AT1G18930; Name=AT1G18930.1; index=1; computational_description=pseudogene%2C hypothetical protein; Dbxref=locus:2011281; Note=transposable_element_gene; locus_type=transposable_element_gene
AT1G18940.1	chr1:006543852	0.0	W/6543852-6544328,6544489-6545592	AT1G18940.1 CDS AT1G18940 ID=AT1G18940.1; Parent=AT1G18940; Name=AT1G18940.1; Note=Nodulin-like / Major Facilitator Superfamily protein; conf_class=4; computational_description=Nodulin-like / Major Facilitator Superfamily protein%3B INVOLVED IN: transmembrane transport%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: sperm cell%2C male gametophyte%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%3B CONTAINS InterPro DOMAIN/s: Nodulin-like (InterPro:IPR010658)%2C Major facilitator superfamily MFS-1 (InterPro:IPR011701)%2C Major facilitator superfamily%2C general substrate transporter (InterPro:IPR016196)%3B BEST Arabidopsis thaliana protein match is: Nodulin-like / Major Facilitator Superfamily protein (TAIR:AT1G74780.1)%3B Has 2227 Blast hits to 2174 proteins in 664 species: Archae - 25%3B Bacteria - 1034%3B Metazoa - 33%3B Fungi - 244%3B Plants - 602%3B Viruses - 0%3B Other Eukaryotes - 289 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:22253603, locus:2011241; locus_type=protein_coding
AT1G18950.1	chr1:006546539	0.0	W/6546539-6546979,6547091-6547201,6548182-6548268,6548358-6548395,6548475-6548556,6548843-6548949,6549029-6549185,6549867-6549959,6550074-6550194,6550318-6550360,6550478-6550669,6550769-6551549	AT1G18950.1 CDS AT1G18950 ID=AT1G18950.1; Parent=AT1G18950; Name=AT1G18950.1; Note=DDT domain superfamily; conf_class=2; computational_description=DDT domain superfamily%3B CONTAINS InterPro DOMAIN/s: DDT domain (InterPro:IPR004022)%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25580.1)%3B Has 20293 Blast hits to 13585 proteins in 823 species: Archae - 41%3B Bacteria - 1919%3B Metazoa - 8043%3B Fungi - 2539%3B Plants - 1031%3B Viruses - 220%3B Other Eukaryotes - 6500 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16429265, locus:2011261; locus_type=protein_coding
AT1G18950.2	chr1:006546539	0.0	W/6546539-6546979,6547091-6547201,6548182-6548268,6548358-6548395,6548475-6548556,6548843-6548949,6549029-6549185,6549867-6549959,6550074-6550194,6550318-6550360,6550478-6550681,6550763-6551549	AT1G18950.2 CDS AT1G18950 ID=AT1G18950.2; Parent=AT1G18950; Name=AT1G18950.2; Note=DDT domain superfamily; computational_description=DDT domain superfamily%3B CONTAINS InterPro DOMAIN/s: DDT domain (InterPro:IPR004022)%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25580.1)%3B Has 20293 Blast hits to 13585 proteins in 823 species: Archae - 41%3B Bacteria - 1919%3B Metazoa - 8043%3B Fungi - 2539%3B Plants - 1031%3B Viruses - 220%3B Other Eukaryotes - 6500 (source: NCBI BLink).; Dbxref=PMID:16429265, locus:2011261; locus_type=protein_coding
AT1G18950.3	chr1:006546539	0.0	W/6546539-6546979,6547091-6547201,6548182-6548268,6548358-6548395,6548475-6548556,6548843-6548949,6549029-6549185,6549867-6549959,6550074-6550194,6550318-6550360,6550478-6550669,6550763-6551549	AT1G18950.3 CDS AT1G18950 ID=AT1G18950.3; Parent=AT1G18950; Name=AT1G18950.3; Note=DDT domain superfamily; computational_description=DDT domain superfamily%3B CONTAINS InterPro DOMAIN/s: DDT domain (InterPro:IPR004022)%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25580.1)%3B Has 20293 Blast hits to 13585 proteins in 823 species: Archae - 41%3B Bacteria - 1919%3B Metazoa - 8043%3B Fungi - 2539%3B Plants - 1031%3B Viruses - 220%3B Other Eukaryotes - 6500 (source: NCBI BLink).; Dbxref=PMID:16429265, locus:2011261; locus_type=protein_coding
AT1G18960.1	chr1:006552854	0.0	W/6552854-6552971,6553055-6553178,6553259-6553940	AT1G18960.1 CDS AT1G18960 ID=AT1G18960.1; Parent=AT1G18960; Name=AT1G18960.1; Note=myb-like HTH transcriptional regulator family protein; conf_class=2; computational_description=myb-like HTH transcriptional regulator family protein%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%2C regulation of transcription%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%2C Homeodomain-related (InterPro:IPR012287)%2C Myb transcription factor (InterPro:IPR015495)%3B BEST Arabidopsis thaliana protein match is: myb domain protein 103 (TAIR:AT5G56110.1)%3B Has 5693 Blast hits to 5684 proteins in 361 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 298%3B Fungi - 67%3B Plants - 4922%3B Viruses - 3%3B Other Eukaryotes - 403 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:12777054, PMID:16463103, locus:2011276; locus_type=protein_coding
AT1G18970.1	chr1:006554702	0.0	C/6554702-6555364	AT1G18970.1 CDS AT1G18970 ID=AT1G18970.1; Parent=AT1G18970; Name=AT1G18970.1; Note=germin-like protein 4; curator_summary=Encodes a germin-like protein with possible oxalate oxidase activity (based on GenBank record).; conf_class=1; symbol=GLP4; full_name=germin-like protein 4; computational_description=germin-like protein 4 (GLP4)%3B FUNCTIONS IN: manganese ion binding%2C nutrient reservoir activity%3B LOCATED IN: endomembrane system%2C apoplast%3B EXPRESSED IN: root%3B CONTAINS InterPro DOMAIN/s: Cupin%2C RmlC-type (InterPro:IPR011051)%2C Cupin 1 (InterPro:IPR006045)%2C RmlC-like jelly roll fold (InterPro:IPR014710)%2C Germin (InterPro:IPR001929)%2C Germin%2C manganese binding site (InterPro:IPR019780)%3B BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT1G18980.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14714874, PMID:15824099, PMID:19499151, locus:2011291; locus_type=protein_coding
AT1TE21250	chr1:006556170	0.0	W/6556170-6556521	AT1TE21250 transposable_element AT1TE21250 ID=AT1TE21250; Name=AT1TE21250; Alias=ATTIRX1A
AT1G18980.1	chr1:006557364	0.0	C/6557364-6558026	AT1G18980.1 CDS AT1G18980 ID=AT1G18980.1; Parent=AT1G18980; Name=AT1G18980.1; Note=RmlC-like cupins superfamily protein; conf_class=1; computational_description=RmlC-like cupins superfamily protein%3B FUNCTIONS IN: manganese ion binding%2C nutrient reservoir activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%2C apoplast%3B EXPRESSED IN: inflorescence meristem%2C hypocotyl%2C root%2C flower%2C pollen tube%3B EXPRESSED DURING: petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Cupin%2C RmlC-type (InterPro:IPR011051)%2C Cupin 1 (InterPro:IPR006045)%2C Germin (InterPro:IPR001929)%2C RmlC-like jelly roll fold (InterPro:IPR014710)%3B BEST Arabidopsis thaliana protein match is: germin-like protein 4 (TAIR:AT1G18970.1)%3B Has 1578 Blast hits to 1564 proteins in 115 species: Archae - 0%3B Bacteria - 82%3B Metazoa - 0%3B Fungi - 29%3B Plants - 1449%3B Viruses - 0%3B Other Eukaryotes - 18 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15272001, PMID:18775970, locus:2011306; locus_type=protein_coding
AT1G18975.1	chr1:006557553	0.0	W/6557553-6557747	AT1G18975.1 CDS AT1G18975 ID=AT1G18975.1; Parent=AT1G18975; Name=AT1G18975.1; Note=hypothetical protein; locus_type=protein_coding
AT1G18990.1	chr1:006558778	0.0	C/6558778-6558977,6559058-6560432	AT1G18990.1 CDS AT1G18990 ID=AT1G18990.1; Parent=AT1G18990; Name=AT1G18990.1; Note=myosin-binding protein%2C putative (Protein of unknown function%2C DUF593); conf_class=1; computational_description=Protein of unknown function%2C DUF593%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 9 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%2C C globular stage%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF593 (InterPro:IPR007656)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function%2C DUF593 (TAIR:AT1G74830.1)%3B Has 1377 Blast hits to 1217 proteins in 215 species: Archae - 6%3B Bacteria - 79%3B Metazoa - 450%3B Fungi - 121%3B Plants - 429%3B Viruses - 14%3B Other Eukaryotes - 278 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:18775970, locus:2011206; locus_type=protein_coding
AT1G19000.1	chr1:006561335	0.0	C/6561335-6561682,6561983-6562191,6562384-6562684	AT1G19000.1 CDS AT1G19000 ID=AT1G19000.1; Parent=AT1G19000; Name=AT1G19000.1; Note=Homeodomain-like superfamily protein; conf_class=2; computational_description=Homeodomain-like superfamily protein%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C Myb-like DNA-binding domain%2C SHAQKYF class (InterPro:IPR006447)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%3B BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT1G74840.1)%3B Has 1188 Blast hits to 1183 proteins in 100 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1018%3B Viruses - 0%3B Other Eukaryotes - 170 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:16424108, PMID:16489130, PMID:16463051, PMID:18650403, locus:2011216; locus_type=protein_coding
AT1G19000.2	chr1:006561335	0.0	C/6561335-6561682,6561983-6562191,6562384-6562684	AT1G19000.2 CDS AT1G19000 ID=AT1G19000.2; Parent=AT1G19000; Name=AT1G19000.2; Note=Homeodomain-like superfamily protein; conf_class=2; computational_description=Homeodomain-like superfamily protein%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C Myb-like DNA-binding domain%2C SHAQKYF class (InterPro:IPR006447)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%3B BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT1G74840.1)%3B Has 1188 Blast hits to 1183 proteins in 100 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1018%3B Viruses - 0%3B Other Eukaryotes - 170 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:16424108, PMID:16489130, PMID:16463051, PMID:18650403, locus:2011216; locus_type=protein_coding
AT1G19010.1	chr1:006565616	0.0	W/6565616-6565630,6565869-6566045,6566413-6567120,6567295-6567354	AT1G19010.1 CDS AT1G19010 ID=AT1G19010.1; Parent=AT1G19010; Name=AT1G19010.1; Note=hypothetical protein; conf_class=2; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74860.1)%3B Has 337 Blast hits to 320 proteins in 97 species: Archae - 0%3B Bacteria - 14%3B Metazoa - 153%3B Fungi - 26%3B Plants - 76%3B Viruses - 0%3B Other Eukaryotes - 68 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, locus:2011231; locus_type=protein_coding
AT1G19010.2	chr1:006565941	0.0	W/6565941-6566045,6566413-6567120,6567295-6567354	AT1G19010.2 CDS AT1G19010 ID=AT1G19010.2; Parent=AT1G19010; Name=AT1G19010.2; Note=hypothetical protein; conf_class=2; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74860.1)%3B Has 337 Blast hits to 320 proteins in 97 species: Archae - 0%3B Bacteria - 14%3B Metazoa - 153%3B Fungi - 26%3B Plants - 76%3B Viruses - 0%3B Other Eukaryotes - 68 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, locus:2011231; locus_type=protein_coding
AT1G19020.1	chr1:006568142	0.0	W/6568142-6568402	AT1G19020.1 CDS AT1G19020 ID=AT1G19020.1; Parent=AT1G19020; Name=AT1G19020.1; Note=CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase; conf_class=1; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48180.1)%3B Has 88 Blast hits to 88 proteins in 15 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 88%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15489280, PMID:15720654, PMID:16603662, PMID:16829591, PMID:17888165, PMID:18424626, PMID:18650403, PMID:18614705, locus:2011296; locus_type=protein_coding
AT1G19025.1	chr1:006568920	0.0	W/6568920-6569123,6569198-6569303,6569380-6569600,6569682-6570800	AT1G19025.1 CDS AT1G19025 ID=AT1G19025.1; Parent=AT1G19025; Name=AT1G19025.1; Note=DNA repair metallo-beta-lactamase family protein; conf_class=1; computational_description=DNA repair metallo-beta-lactamase family protein%3B CONTAINS InterPro DOMAIN/s: DNA repair metallo-beta-lactamase (InterPro:IPR011084)%3B BEST Arabidopsis thaliana protein match is: DNA repair metallo-beta-lactamase family protein (TAIR:AT1G27410.1)%3B Has 1078 Blast hits to 1060 proteins in 342 species: Archae - 34%3B Bacteria - 280%3B Metazoa - 259%3B Fungi - 220%3B Plants - 166%3B Viruses - 0%3B Other Eukaryotes - 119 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16510518, locus:505006131; locus_type=protein_coding
AT1G19025.2	chr1:006569388	0.0	W/6569388-6569600,6569682-6570800	AT1G19025.2 CDS AT1G19025 ID=AT1G19025.2; Parent=AT1G19025; Name=AT1G19025.2; Note=DNA repair metallo-beta-lactamase family protein; computational_description=DNA repair metallo-beta-lactamase family protein%3B CONTAINS InterPro DOMAIN/s: DNA repair metallo-beta-lactamase (InterPro:IPR011084)%3B BEST Arabidopsis thaliana protein match is: DNA repair metallo-beta-lactamase family protein (TAIR:AT1G27410.1)%3B Has 1078 Blast hits to 1060 proteins in 342 species: Archae - 34%3B Bacteria - 280%3B Metazoa - 259%3B Fungi - 220%3B Plants - 166%3B Viruses - 0%3B Other Eukaryotes - 119 (source: NCBI BLink).; Dbxref=PMID:16510518, locus:505006131; locus_type=protein_coding
AT1G19025.3	chr1:006569499	0.0	W/6569499-6569600,6569682-6570800	AT1G19025.3 CDS AT1G19025 ID=AT1G19025.3; Parent=AT1G19025; Name=AT1G19025.3; Note=DNA repair metallo-beta-lactamase family protein; computational_description=DNA repair metallo-beta-lactamase family protein%3B CONTAINS InterPro DOMAIN/s: DNA repair metallo-beta-lactamase (InterPro:IPR011084)%3B BEST Arabidopsis thaliana protein match is: DNA repair metallo-beta-lactamase family protein (TAIR:AT1G27410.1)%3B Has 1078 Blast hits to 1060 proteins in 342 species: Archae - 34%3B Bacteria - 280%3B Metazoa - 259%3B Fungi - 220%3B Plants - 166%3B Viruses - 0%3B Other Eukaryotes - 119 (source: NCBI BLink).; Dbxref=PMID:16510518, locus:505006131; locus_type=protein_coding
AT1G19030.1	chr1:006571184	0.0	W/6571184-6572937	AT1G19030.1 CDS AT1G19030 ID=AT1G19030.1; Parent=AT1G19030; Name=AT1G19030.1; index=1; computational_description=similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G13655.1)%3B similar to putative AP endonuclease/reverse transcriptase [Brassica napus] (GB:AAM82604.1)%3B contains domain NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE RELATED (PTHR19446:SF34)%3B contains domain REVERSE TRANSCRIPTASES (PTHR19446); Dbxref=PMID:18667720, locus:2011256; Note=transposable_element_gene; locus_type=transposable_element_gene
AT1TE21300	chr1:006571873	0.0	W/6571873-6573214	AT1TE21300 transposable_element AT1TE21300 ID=AT1TE21300; Name=AT1TE21300; Alias=ATLINE2
AT1TE21305	chr1:006573464	0.0	W/6573464-6574189	AT1TE21305 transposable_element AT1TE21305 ID=AT1TE21305; Name=AT1TE21305; Alias=TSCL
AT1TE21310	chr1:006574510	0.0	W/6574510-6575045	AT1TE21310 transposable_element AT1TE21310 ID=AT1TE21310; Name=AT1TE21310; Alias=ATN9_1
AT1G19040.1	chr1:006576895	0.0	W/6576895-6577413	AT1G19040.1 CDS AT1G19040 ID=AT1G19040.1; Parent=AT1G19040; Name=AT1G19040.1; Note=NAC (No Apical Meristem) domain transcriptional regulator superfamily protein; conf_class=1; computational_description=NAC (No Apical Meristem) domain transcriptional regulator superfamily protein%3B CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441)%3B BEST Arabidopsis thaliana protein match is: NAC domain containing protein 6 (TAIR:AT1G03490.1)%3B Has 740 Blast hits to 735 proteins in 48 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 740%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11118137, PMID:14605227, PMID:16820983, locus:2011321; locus_type=protein_coding
AT1G19050.1	chr1:006577919	0.0	C/6577919-6578165,6578263-6578333,6578427-6578504,6578724-6578800,6578931-6579078	AT1G19050.1 CDS AT1G19050 ID=AT1G19050.1; Parent=AT1G19050; Name=AT1G19050.1; Note=response regulator 7; curator_summary=Encodes a member of the Arabidopsis response regulator (ARR) family%2C most closely related to ARR15. A two-component response regulator protein containing a phosphate accepting domain in the receiver domain but lacking a DNA binding domain in the output domain. Involved in response to cytokinin and meristem stem cell maintenance. Arr7 protein is stabilized by cytokinin.; conf_class=2; symbol=ARR7; full_name=response regulator 7; computational_description=response regulator 7 (ARR7)%3B CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006)%2C Signal transduction response regulator%2C receiver domain (InterPro:IPR001789)%3B BEST Arabidopsis thaliana protein match is: response regulator 15 (TAIR:AT1G74890.1)%3B Has 53636 Blast hits to 53063 proteins in 2702 species: Archae - 285%3B Bacteria - 47261%3B Metazoa - 20%3B Fungi - 584%3B Plants - 1468%3B Viruses - 6%3B Other Eukaryotes - 4012 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9662428, PMID:9482949, PMID:11574878, PMID:12068096, PMID:16372013, PMID:16407152, PMID:17061125, PMID:17277095, PMID:17722694, PMID:17938953, PMID:18065689, PMID:18650403, PMID:18642946, PMID:18723577, PMID:18463635, PMID:19621034, PMID:19682286, PMID:19841668, PMID:19893362, PMID:20018401, PMID:20463025, PMID:20577215, PMID:22706288, PMID:22704545, PMID:22951399, PMID:24258244, PMID:25642237, locus:2011286; locus_type=protein_coding
AT1G19060.1	chr1:006582066	0.0	C/6582066-6582434,6582563-6582652,6582730-6582839,6582926-6582989,6583228-6583374,6583518-6583601	AT1G19060.1 CDS AT1G19060 ID=AT1G19060.1; Parent=AT1G19060; Name=AT1G19060.1; Note=hypothetical protein (DUF626); conf_class=6; computational_description=Protein of unknown function (DUF626)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626%2C Arabidopsis thaliana (InterPro:IPR006462)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF626) (TAIR:AT1G02770.1)%3B Has 198 Blast hits to 197 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 198%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=**; Dbxref=locus:2011301; locus_type=protein_coding
AT1G19070.1	chr1:006584454	0.0	W/6584454-6584705	AT1G19070.1 CDS AT1G19070 ID=AT1G19070.1; Parent=AT1G19070; Name=AT1G19070.1; Note=F-box family protein; conf_class=1; computational_description=F-box family protein%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%3B BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT4G22280.1)%3B Has 1388 Blast hits to 1366 proteins in 25 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1388%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:18426585, locus:2011326; locus_type=protein_coding
AT1G19080.1	chr1:006585087	0.0	W/6585087-6585131,6585214-6585282,6585373-6585473,6585673-6585765,6585952-6586091,6586199-6586308	AT1G19080.1 CDS AT1G19080 ID=AT1G19080.1; Parent=AT1G19080; Name=AT1G19080.1; Note=GINS complex protein; curator_summary=This gene is predicted to encode a PSF3 component of the GINS complex. This complex has been implicated in the initiation of DNA replication in Xenopus. Mutations in this gene cause defects in embryo development.; conf_class=3; symbol=TTN10; Alias=PSF3, Partner of SLD5 3; full_name=TITAN 10; computational_description=TITAN 10 (TTN10)%3B CONTAINS InterPro DOMAIN/s: GINS complex%2C subunit Psf3 (InterPro:IPR010492)%2C GINS complex (InterPro:IPR021151)%3B BEST Arabidopsis thaliana protein match is: GINS complex protein (TAIR:AT3G55490.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15266054, PMID:17556508, PMID:18650403, PMID:18775970, PMID:22487254, locus:2011311; locus_type=protein_coding
AT1G19080.2	chr1:006585087	0.0	W/6585087-6585131,6585214-6585282,6585373-6585473,6585673-6585765,6585952-6586091,6586199-6586308	AT1G19080.2 CDS AT1G19080 ID=AT1G19080.2; Parent=AT1G19080; Name=AT1G19080.2; Note=GINS complex protein; curator_summary=This gene is predicted to encode a PSF3 component of the GINS complex. This complex has been implicated in the initiation of DNA replication in Xenopus. Mutations in this gene cause defects in embryo development.; conf_class=2; symbol=TTN10; Alias=PSF3, Partner of SLD5 3; full_name=TITAN 10; computational_description=TITAN 10 (TTN10)%3B CONTAINS InterPro DOMAIN/s: GINS complex%2C subunit Psf3 (InterPro:IPR010492)%2C GINS complex (InterPro:IPR021151)%3B BEST Arabidopsis thaliana protein match is: GINS complex protein (TAIR:AT3G55490.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15266054, PMID:17556508, PMID:18650403, PMID:18775970, PMID:22487254, locus:2011311; locus_type=protein_coding
AT1TE21350	chr1:006587076	0.0	C/6587076-6587127	AT1TE21350 transposable_element AT1TE21350 ID=AT1TE21350; Name=AT1TE21350; Alias=ATREP10B
AT1TE21355	chr1:006587128	0.0	C/6587128-6588246	AT1TE21355 transposable_element AT1TE21355 ID=AT1TE21355; Name=AT1TE21355; Alias=ATREP10A
AT1G19086.1	chr1:006588542	0.0	W/6588542-6588575,6588652-6588819,6588919-6589004,6589083-6589256	AT1G19086.1 CDS AT1G19086 ID=AT1G19086.1; Parent=AT1G19086; Name=AT1G19086.1; Note=hypothetical protein; conf_class=6; computational_description=unknown protein%3B LOCATED IN: endomembrane system%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:17395691, locus:4515102549; locus_type=protein_coding
AT1TE21360	chr1:006589531	0.0	W/6589531-6589760	AT1TE21360 transposable_element AT1TE21360 ID=AT1TE21360; Name=AT1TE21360; Alias=RP1_AT
AT1G19090.1	chr1:006590350	0.0	W/6590350-6591094,6591177-6591323,6591409-6591728,6591804-6592038,6592121-6592265,6592361-6592615	AT1G19090.1 CDS AT1G19090 ID=AT1G19090.1; Parent=AT1G19090; Name=AT1G19090.1; Note=receptor-like serine/threonine kinase 2; curator_summary=receptor-like serine/threonine kinase (RKF2); conf_class=6; symbol=RKF2; Alias=CRK1, CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 1; full_name=receptor-like serine/threonine kinase 2; computational_description=receptor-like serine/threonine kinase 2 (RKF2)%3B FUNCTIONS IN: receptor signaling protein serine/threonine kinase activity%2C kinase activity%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: male gametophyte%2C pollen tube%3B EXPRESSED DURING: M germinated pollen stage%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Protein of unknown function DUF26 (InterPro:IPR002902)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase-like domain (InterPro:IPR011009)%3B BEST Arabidopsis thaliana protein match is: cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (TAIR:AT5G40380.1)%3B Has 112374 Blast hits to 111073 proteins in 3970 species: Archae - 108%3B Bacteria - 13388%3B Metazoa - 41005%3B Fungi - 9087%3B Plants - 31953%3B Viruses - 460%3B Other Eukaryotes - 16373 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:9687063, PMID:14500793, PMID:18775970, PMID:15604743, PMID:20500828, PMID:20736450, locus:2011316; locus_type=protein_coding
AT1TE21370	chr1:006593173	0.0	W/6593173-6594618	AT1TE21370 transposable_element AT1TE21370 ID=AT1TE21370; Name=AT1TE21370; Alias=ATREP10D
AT1TE21375	chr1:006594619	0.0	W/6594619-6594664	AT1TE21375 transposable_element AT1TE21375 ID=AT1TE21375; Name=AT1TE21375; Alias=HELITRONY3
AT1G19100.1	chr1:006595560	0.0	W/6595560-6595878,6596043-6596117,6596199-6596233,6596566-6596644,6596748-6596837,6596998-6597073,6597184-6597262,6597340-6597468,6597915-6598013,6598110-6598196,6598464-6598610,6598707-6598799,6599093-6599144,6599259-6599370,6599621-6599790,6600164-6600273,6600528-6600607,6600694-6600736,6601043-6601159	AT1G19100.1 CDS AT1G19100 ID=AT1G19100.1; Parent=AT1G19100; Name=AT1G19100.1; Note=Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase family protein; curator_summary=Encodes a member of the conserved Microrchidia (MORC) adenosine triphosphatase (ATPase) family%2C predicted to catalyze alterations in chromosome superstructure. Required for heterochromatin condensation and gene silencing.; conf_class=1; symbol=DMS11; Alias=AtMORC6, MORC6, Microrchidia 6; full_name=DEFECTIVE IN MERISTEM SILENCING 11; computational_description=Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase family protein%3B FUNCTIONS IN: ATP binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast envelope%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: ATPase-like%2C ATP-binding domain (InterPro:IPR003594)%3B BEST Arabidopsis thaliana protein match is: Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase family protein (TAIR:AT4G36280.1)%3B Has 533 Blast hits to 518 proteins in 94 species: Archae - 0%3B Bacteria - 53%3B Metazoa - 227%3B Fungi - 0%3B Plants - 195%3B Viruses - 0%3B Other Eukaryotes - 58 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16359384, PMID:18775970, PMID:20226671, PMID:22560611, PMID:22555433, PMID:23675613, PMID:24465213, PMID:24799676, locus:2011226; locus_type=protein_coding
AT1G19110.1	chr1:006602270	0.0	W/6602270-6602665,6602832-6602984,6603071-6603283,6603376-6603465,6603580-6603696,6603777-6604046,6604146-6604302,6604389-6604466,6604559-6604659,6604764-6604934,6605039-6605113,6605188-6605295,6605431-6605766	AT1G19110.1 CDS AT1G19110 ID=AT1G19110.1; Parent=AT1G19110; Name=AT1G19110.1; Note=inter-alpha-trypsin inhibitor heavy chain-like protein; conf_class=2; computational_description=inter-alpha-trypsin inhibitor heavy chain-related%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%2C membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: von Willebrand factor%2C type A (InterPro:IPR002035)%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72500.1)%3B Has 1620 Blast hits to 1609 proteins in 312 species: Archae - 28%3B Bacteria - 510%3B Metazoa - 544%3B Fungi - 65%3B Plants - 218%3B Viruses - 0%3B Other Eukaryotes - 255 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, locus:2011236; locus_type=protein_coding
AT1G19115.1	chr1:006606351	0.0	W/6606351-6606356,6606444-6606504,6606612-6606913,6607039-6607183,6607303-6607313	AT1G19115.1 CDS AT1G19115 ID=AT1G19115.1; Parent=AT1G19115; Name=AT1G19115.1; Note=hypothetical protein; conf_class=1; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72490.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:4010713453; locus_type=protein_coding
AT1G19115.2	chr1:006606351	0.0	W/6606351-6606356,6606444-6606504,6606612-6606913,6607039-6607183,6607657-6607667	AT1G19115.2 CDS AT1G19115 ID=AT1G19115.2; Parent=AT1G19115; Name=AT1G19115.2; Note=hypothetical protein; conf_class=2; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72490.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:4010713453; locus_type=protein_coding
AT1G19115.3	chr1:006606351	0.0	W/6606351-6606356,6606444-6606504,6606612-6606913,6607039-6607197	AT1G19115.3 CDS AT1G19115 ID=AT1G19115.3; Parent=AT1G19115; Name=AT1G19115.3; Note=hypothetical protein; conf_class=2; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72490.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:4010713453; locus_type=protein_coding
AT1G19115.4	chr1:006606351	0.0	W/6606351-6606356,6606444-6606504,6606612-6606913,6607039-6607183,6607466-6607485	AT1G19115.4 CDS AT1G19115 ID=AT1G19115.4; Parent=AT1G19115; Name=AT1G19115.4; Note=hypothetical protein; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72490.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=locus:4010713453; locus_type=protein_coding
AT1G19120.1	chr1:006608288	0.0	W/6608288-6608348,6608497-6608565,6608653-6608768,6608872-6608934,6609085-6609162	AT1G19120.1 CDS AT1G19120 ID=AT1G19120.1; Parent=AT1G19120; Name=AT1G19120.1; Note=Small nuclear ribonucleoprotein family protein; conf_class=2; symbol=LSM1A; full_name=SM-like 1A; computational_description=Small nuclear ribonucleoprotein family protein%3B CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163)%2C Like-Sm ribonucleoprotein (LSM) domain%2C eukaryotic/archaea-type (InterPro:IPR006649)%2C Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920)%3B BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT3G14080.2)%3B Has 1149 Blast hits to 1149 proteins in 232 species: Archae - 65%3B Bacteria - 0%3B Metazoa - 426%3B Fungi - 329%3B Plants - 203%3B Viruses - 0%3B Other Eukaryotes - 126 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:20736450, PMID:20687615, PMID:21142222, PMID:23221597, PMID:23620288, locus:2011246; locus_type=protein_coding
AT1G05463.1	chr1:006608326	0.0	C/6608326-6608519	AT1G05463.1 antisense_RNA AT1G05463 ID=AT1G05463.1; Parent=AT1G05463; Name=AT1G05463.1; description=Natural antisense transcript overlaps with AT1G19120; Note=Natural antisense transcript overlaps with AT1G19120; locus_type=antisense_rna
AT1G19130.1	chr1:006609545	0.0	C/6609545-6609865,6609973-6610094,6610420-6610555	AT1G19130.1 CDS AT1G19130 ID=AT1G19130.1; Parent=AT1G19130; Name=AT1G19130.1; Note=RmlC-like jelly roll fold protein; conf_class=2; computational_description=CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF985 (InterPro:IPR009327)%2C RmlC-like jelly roll fold (InterPro:IPR014710)%3B Has 1465 Blast hits to 1465 proteins in 584 species: Archae - 10%3B Bacteria - 1038%3B Metazoa - 19%3B Fungi - 43%3B Plants - 51%3B Viruses - 0%3B Other Eukaryotes - 304 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18650403, PMID:20118269, locus:2011251; locus_type=protein_coding
AT1G05467.1	chr1:006610071	0.0	W/6610071-6610443	AT1G05467.1 antisense_lncRNA AT1G05467 ID=AT1G05467.1; Parent=AT1G05467; Name=AT1G05467.1; description=Natural antisense transcript overlaps with AT1G19130; Note=Natural antisense transcript overlaps with AT1G19130; locus_type=antisense_long_noncoding_rna
AT1G19140.1	chr1:006611026	0.0	C/6611026-6611136,6611238-6611311,6611398-6611569,6611650-6611811,6611920-6612027,6612106-6612414	AT1G19140.1 CDS AT1G19140 ID=AT1G19140.1; Parent=AT1G19140; Name=AT1G19140.1; Note=ubiquinone biosynthesis COQ9-like protein; conf_class=2; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: ubiquinone biosynthetic process%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: COQ9 (InterPro:IPR013718)%2C Ubiquinone biosynthesis protein COQ9 (InterPro:IPR012762)%3B Has 748 Blast hits to 748 proteins in 260 species: Archae - 0%3B Bacteria - 218%3B Metazoa - 126%3B Fungi - 101%3B Plants - 39%3B Viruses - 0%3B Other Eukaryotes - 264 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14671022, PMID:18775970, PMID:20736450, locus:2011271; locus_type=protein_coding
AT1G19140.2	chr1:006611026	0.0	C/6611026-6611136,6611238-6611314,6611398-6611569,6611650-6611811,6611920-6612027,6612106-6612414	AT1G19140.2 CDS AT1G19140 ID=AT1G19140.2; Parent=AT1G19140; Name=AT1G19140.2; Note=ubiquinone biosynthesis COQ9-like protein; conf_class=2; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: ubiquinone biosynthetic process%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: COQ9 (InterPro:IPR013718)%2C Ubiquinone biosynthesis protein COQ9 (InterPro:IPR012762)%3B Has 748 Blast hits to 748 proteins in 260 species: Archae - 0%3B Bacteria - 218%3B Metazoa - 126%3B Fungi - 101%3B Plants - 39%3B Viruses - 0%3B Other Eukaryotes - 264 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14671022, PMID:18775970, PMID:20736450, locus:2011271; locus_type=protein_coding
AT1G19150.1	chr1:006612806	0.0	W/6612806-6613085,6613169-6613683,6613782-6613799	AT1G19150.1 CDS AT1G19150 ID=AT1G19150.1; Parent=AT1G19150; Name=AT1G19150.1; Note=PSI type II chlorophyll a/b-binding protein (Lhca2*1); curator_summary=PSI type II chlorophyll a/b-binding protein (Lhca2*1) mRNA%2C; conf_class=2; symbol=Lhca6; Alias=LHCA2*1; full_name=photosystem I light harvesting complex gene 6; computational_description=photosystem I light harvesting complex gene 6 (LHCA6)%3B FUNCTIONS IN: chlorophyll binding%3B INVOLVED IN: response to blue light%2C response to red light%2C response to far red light%2C photosynthesis%3B LOCATED IN: light-harvesting complex%2C chloroplast%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344)%3B BEST Arabidopsis thaliana protein match is: photosystem I light harvesting complex gene 2 (TAIR:AT3G61470.1)%3B Has 2345 Blast hits to 2241 proteins in 223 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 3%3B Fungi - 0%3B Plants - 1989%3B Viruses - 0%3B Other Eukaryotes - 353 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:14558660, PMID:14729914, PMID:15171794, PMID:15282545, PMID:15375207, PMID:15659098, PMID:18272919, PMID:18359847, PMID:18650403, PMID:18820083, PMID:19903870, PMID:21278308, PMID:21785130, locus:2202150; locus_type=protein_coding
AT1G19160.1	chr1:006614162	0.0	C/6614162-6615214	AT1G19160.1 CDS AT1G19160 ID=AT1G19160.1; Parent=AT1G19160; Name=AT1G19160.1; Note=F-box family protein; conf_class=9; computational_description=F-box family protein%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%2C F-box associated domain%2C type 3 (InterPro:IPR013187)%2C F-box associated interaction domain (InterPro:IPR017451)%3B BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT5G52610.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=*; Dbxref=locus:2202160; locus_type=protein_coding
AT1G19170.1	chr1:006616777	0.0	W/6616777-6617247,6617562-6617682,6617762-6618010,6618100-6618253,6618350-6618875	AT1G19170.1 CDS AT1G19170 ID=AT1G19170.1; Parent=AT1G19170; Name=AT1G19170.1; Note=Pectin lyase-like superfamily protein; conf_class=2; computational_description=Pectin lyase-like superfamily protein%3B FUNCTIONS IN: polygalacturonase activity%3B INVOLVED IN: carbohydrate metabolic process%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050)%2C Parallel beta-helix repeat (InterPro:IPR006626)%2C Pectin lyase fold (InterPro:IPR012334)%2C Glycoside hydrolase%2C family 28 (InterPro:IPR000743)%3B BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G42950.1)%3B Has 4384 Blast hits to 4371 proteins in 509 species: Archae - 6%3B Bacteria - 1552%3B Metazoa - 14%3B Fungi - 1224%3B Plants - 1428%3B Viruses - 0%3B Other Eukaryotes - 160 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16367961, PMID:17010199, PMID:17411438, PMID:18796151, PMID:23056537, locus:2202170; locus_type=protein_coding
AT1G08925.2	chr1:006619133	0.0	C/6619133-6619507	AT1G08925.2 transcript_region AT1G08925 ID=AT1G08925.2; Parent=AT1G08925; computational_description=novel transcribed region; Name=AT1G08925.2; locus_type=novel_transcribed_region
AT1G08925.1	chr1:006619256	0.0	C/6619256-6619997	AT1G08925.1 transcript_region AT1G08925 ID=AT1G08925.1; Parent=AT1G08925; computational_description=novel transcribed region; Name=AT1G08925.1; locus_type=novel_transcribed_region
AT1G05473.1	chr1:006620854	0.0	C/6620854-6621071	AT1G05473.1 lnc_RNA AT1G05473 ID=AT1G05473.1; Parent=AT1G05473; Name=AT1G05473.1; locus_type=long_noncoding_rna
AT1G19180.1	chr1:006622312	0.0	W/6622312-6622474,6622673-6623271	AT1G19180.1 CDS AT1G19180 ID=AT1G19180.1; Parent=AT1G19180; Name=AT1G19180.1; Note=jasmonate-zim-domain protein 1; curator_summary=JAZ1 is a nuclear-localized protein involved in jasmonate signaling. JAZ1 transcript levels rise in response to a jasmonate stimulus. JAZ1 can interact with the COI1 F-box subunit of an SCF E3 ubiquitin ligase in a yeast-two-hybrid assay only in the presence of jasmonate-isoleucine (JA-ILE) or coronatine. Application of jasmonate methyl ester to Arabidopsis roots reduces the levels of a JAZ1:GUS fusion protein%2C presumably by stimulating ubiquitin-proteasome-mediated degradation. The Jas domain appears to be important for JAZ1-COI1 interactions in the presence of coronatine. Two positive residues (R205 and R206) in the Jas domain shown to be important for coronatine -dependent COI1 binding are not required for binding AtMYC2.; conf_class=2; symbol=JAZ1; Alias=AtJAZ1, TIFY10A; full_name=jasmonate-zim-domain protein 1; computational_description=jasmonate-zim-domain protein 1 (JAZ1)%3B CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399)%2C CCT domain-like (InterPro:IPR018467)%3B BEST Arabidopsis thaliana protein match is: TIFY domain/Divergent CCT motif family protein (TAIR:AT1G74950.1)%3B Has 439 Blast hits to 432 proteins in 29 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 439%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12167669, PMID:12427978, PMID:13677466, PMID:15272873, PMID:15287975, PMID:15688252, PMID:15720654, PMID:16720694, PMID:16980540, PMID:17337630, PMID:17499004, PMID:17637675, PMID:17675405, PMID:17888165, PMID:18230180, PMID:18252252, PMID:18775970, PMID:19002244, PMID:19575013, PMID:19717617, PMID:20140232, PMID:20360743, PMID:20435902, PMID:20927106, PMID:21145503, PMID:21321051, PMID:21447791, PMID:20671423, PMID:22173100, PMID:22327740, PMID:22452854, PMID:23393583, PMID:23169619, PMID:23933884, PMID:25301887, PMID:25627909, locus:2202180; locus_type=protein_coding
AT1G19180.3	chr1:006622312	0.0	W/6622312-6622474,6622673-6623271	AT1G19180.3 CDS AT1G19180 ID=AT1G19180.3; Parent=AT1G19180; Name=AT1G19180.3; Note=jasmonate-zim-domain protein 1; symbol=JAZ1; Alias=AtJAZ1, TIFY10A; full_name=jasmonate-zim-domain protein 1; Dbxref=PMID:12167669, PMID:12427978, PMID:13677466, PMID:15272873, PMID:15287975, PMID:15688252, PMID:15720654, PMID:16720694, PMID:16980540, PMID:17337630, PMID:17499004, PMID:17637675, PMID:17675405, PMID:17888165, PMID:18230180, PMID:18252252, PMID:18775970, PMID:19002244, PMID:19575013, PMID:19717617, PMID:20140232, PMID:20360743, PMID:20435902, PMID:20927106, PMID:21145503, PMID:21321051, PMID:21447791, PMID:20671423, PMID:22173100, PMID:22327740, PMID:22452854, PMID:23393583, PMID:23169619, PMID:23933884, PMID:25301887, PMID:25627909, locus:2202180; curator_summary=JAZ1 is a nuclear-localized protein involved in jasmonate signaling. JAZ1 transcript levels rise in response to a jasmonate stimulus. JAZ1 can interact with the COI1 F-box subunit of an SCF E3 ubiquitin ligase in a yeast-two-hybrid assay only in the presence of jasmonate-isoleucine (JA-ILE) or coronatine. Application of jasmonate methyl ester to Arabidopsis roots reduces the levels of a JAZ1:GUS fusion protein%2C presumably by stimulating ubiquitin-proteasome-mediated degradation. The Jas domain appears to be important for JAZ1-COI1 interactions in the presence of coronatine. Two positive residues (R205 and R206) in the Jas domain shown to be important for coronatine -dependent COI1 binding are not required for binding AtMYC2.; computational_description=jasmonate-zim-domain protein 1 (JAZ1)%3B CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399)%2C CCT domain-like (InterPro:IPR018467)%3B BEST Arabidopsis thaliana protein match is: TIFY domain/Divergent CCT motif family protein (TAIR:AT1G74950.1)%3B Has 439 Blast hits to 432 proteins in 29 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 439%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; locus_type=protein_coding
AT1G19180.2	chr1:006622708	0.0	W/6622708-6623271	AT1G19180.2 CDS AT1G19180 ID=AT1G19180.2; Parent=AT1G19180; Name=AT1G19180.2; Note=jasmonate-zim-domain protein 1; curator_summary=JAZ1 is a nuclear-localized protein involved in jasmonate signaling. JAZ1 transcript levels rise in response to a jasmonate stimulus. JAZ1 can interact with the COI1 F-box subunit of an SCF E3 ubiquitin ligase in a yeast-two-hybrid assay only in the presence of jasmonate-isoleucine (JA-ILE) or coronatine. Application of jasmonate methyl ester to Arabidopsis roots reduces the levels of a JAZ1:GUS fusion protein%2C presumably by stimulating ubiquitin-proteasome-mediated degradation. The Jas domain appears to be important for JAZ1-COI1 interactions in the presence of coronatine. Two positive residues (R205 and R206) in the Jas domain shown to be important for coronatine -dependent COI1 binding are not required for binding AtMYC2.; conf_class=1; symbol=JAZ1; Alias=AtJAZ1, TIFY10A; full_name=jasmonate-zim-domain protein 1; computational_description=jasmonate-zim-domain protein 1 (JAZ1)%3B CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399)%2C CCT domain-like (InterPro:IPR018467)%3B BEST Arabidopsis thaliana protein match is: TIFY domain/Divergent CCT motif family protein (TAIR:AT1G74950.1)%3B Has 439 Blast hits to 432 proteins in 29 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 439%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12167669, PMID:12427978, PMID:13677466, PMID:15272873, PMID:15287975, PMID:15688252, PMID:15720654, PMID:16720694, PMID:16980540, PMID:17337630, PMID:17499004, PMID:17637675, PMID:17675405, PMID:17888165, PMID:18230180, PMID:18252252, PMID:18775970, PMID:19002244, PMID:19575013, PMID:19717617, PMID:20140232, PMID:20360743, PMID:20435902, PMID:20927106, PMID:21145503, PMID:21321051, PMID:21447791, PMID:20671423, PMID:22173100, PMID:22327740, PMID:22452854, PMID:23393583, PMID:23169619, PMID:23933884, PMID:25301887, PMID:25627909, locus:2202180; locus_type=protein_coding
AT1G19190.1	chr1:006623876	0.0	W/6623876-6624832	AT1G19190.1 CDS AT1G19190 ID=AT1G19190.1; Parent=AT1G19190; Name=AT1G19190.1; Note=alpha/beta-Hydrolases superfamily protein; conf_class=1; computational_description=alpha/beta-Hydrolases superfamily protein%3B FUNCTIONS IN: hydrolase activity%3B INVOLVED IN: metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: inflorescence meristem%2C root%2C flower%3B EXPRESSED DURING: petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Lipase%2C GDXG%2C active site (InterPro:IPR002168)%2C Alpha/beta hydrolase fold-3 (InterPro:IPR013094)%3B BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G03550.1)%3B Has 9471 Blast hits to 9453 proteins in 1548 species: Archae - 114%3B Bacteria - 5498%3B Metazoa - 707%3B Fungi - 823%3B Plants - 1388%3B Viruses - 3%3B Other Eukaryotes - 938 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14738307, PMID:16553894, locus:2202190; locus_type=protein_coding
AT1G19200.1	chr1:006625104	0.0	C/6625104-6625242,6625348-6625856	AT1G19200.1 CDS AT1G19200 ID=AT1G19200.1; Parent=AT1G19200; Name=AT1G19200.1; Note=cyclin-dependent kinase%2C putative (DUF581); conf_class=2; computational_description=Protein of unknown function (DUF581)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF581 (InterPro:IPR007650)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF581) (TAIR:AT1G74940.1)%3B Has 464 Blast hits to 464 proteins in 20 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 464%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2202195; locus_type=protein_coding
AT1G19200.2	chr1:006625104	0.0	C/6625104-6625242,6625348-6625895	AT1G19200.2 CDS AT1G19200 ID=AT1G19200.2; Parent=AT1G19200; Name=AT1G19200.2; Note=cyclin-dependent kinase%2C putative (DUF581); computational_description=Protein of unknown function (DUF581)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF581 (InterPro:IPR007650)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF581) (TAIR:AT1G74940.1)%3B Has 464 Blast hits to 464 proteins in 20 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 464%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=locus:2202195; locus_type=protein_coding
AT1TE21470	chr1:006626063	0.0	C/6626063-6626718	AT1TE21470 transposable_element AT1TE21470 ID=AT1TE21470; Name=AT1TE21470; Alias=ATREP3
AT1G19210.1	chr1:006626973	0.0	C/6626973-6627530	AT1G19210.1 CDS AT1G19210 ID=AT1G19210.1; Parent=AT1G19210; Name=AT1G19210.1; Note=Integrase-type DNA-binding superfamily protein; curator_summary=encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1%2C RAP2.9 and RAP2.10.; conf_class=1; computational_description=Integrase-type DNA-binding superfamily protein%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B LOCATED IN: nucleus%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: 4 anthesis%2C LP.10 ten leaves visible%2C C globular stage%2C LP.02 two leaves visible%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: DNA-binding%2C integrase-type (InterPro:IPR016177)%2C Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (InterPro:IPR001471)%3B BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G74930.1)%3B Has 5600 Blast hits to 5488 proteins in 238 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 5592%3B Viruses - 0%3B Other Eukaryotes - 8 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11118137, PMID:16258017, PMID:16510518, PMID:17337630, PMID:18252252, locus:2202200; locus_type=protein_coding
AT1G19220.1	chr1:006628395	0.0	C/6628395-6628578,6628663-6628853,6628945-6630689,6630772-6630910,6630988-6631348,6631425-6631515,6631603-6631687,6631779-6631934,6632019-6632075,6632153-6632248,6632328-6632440,6632737-6632779	AT1G19220.1 CDS AT1G19220 ID=AT1G19220.1; Parent=AT1G19220; Name=AT1G19220.1; Note=auxin response factor 19; curator_summary=Encodes an auxin response factor that contains the conserved VP1-B3 DNA-binding domain at its N-terminus and the Aux/IAA-like domains III and IV present in most ARFs at its C-terminus. The protein interacts with IAA1 (yeast two hybrid) and other auxin response elements such as ER7 and ER9 (yeast one hybrid). ARF19 protein can complement many aspects of the arf7 mutant phenotype and %2C together with ARF7%2C is involved in the response to ethylene. In the arf7 arf19 double mutant%2C several auxin-responsive genes (e.g. IAA5%2C LBD16%2C LBD29 and LBD33) are no longer upregulated by auxin.; conf_class=4; symbol=ARF19; Alias=ARF11, AUXIN RESPONSE FACTOR11, IAA22, indole-3-acetic acid inducible 22; full_name=auxin response factor 19; computational_description=auxin response factor 19 (ARF19)%3B CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525)%2C Transcriptional factor B3 (InterPro:IPR003340)%2C AUX/IAA protein (InterPro:IPR003311)%2C Auxin response factor (InterPro:IPR010525)%3B BEST Arabidopsis thaliana protein match is: Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (TAIR:AT5G20730.2)%3B Has 61717 Blast hits to 31683 proteins in 1304 species: Archae - 12%3B Bacteria - 3231%3B Metazoa - 21055%3B Fungi - 6588%3B Plants - 6362%3B Viruses - 195%3B Other Eukaryotes - 24274 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:11118137, PMID:15659631, PMID:15923351, PMID:15960621, PMID:16176952, PMID:16236149, PMID:16489122, PMID:16461383, PMID:17010112, PMID:17259263, PMID:18435826, PMID:18505759, PMID:19106375, PMID:15889151, PMID:19717544, PMID:20043234, PMID:20133796, PMID:20230485, PMID:19654206, PMID:21482761, PMID:22278921, PMID:22238449, PMID:22334497, PMID:22307611, PMID:22699776, PMID:22658222, PMID:22995285, PMID:23020607, PMID:23299420, PMID:23288076, PMID:23684976, PMID:23749813, PMID:24285791, PMID:24362628, PMID:25566309, locus:2202205; locus_type=protein_coding
AT1TE21480	chr1:006630259	0.0	C/6630259-6630352	AT1TE21480 transposable_element AT1TE21480 ID=AT1TE21480; Name=AT1TE21480; Alias=ATRE1
AT1G05477.1	chr1:006635120	0.0	C/6635120-6635338	AT1G05477.1 lnc_RNA AT1G05477 ID=AT1G05477.1; Parent=AT1G05477; Name=AT1G05477.1; locus_type=long_noncoding_rna
AT1TE21510	chr1:006640460	0.0	C/6640460-6640486	AT1TE21510 transposable_element AT1TE21510 ID=AT1TE21510; Name=AT1TE21510; Alias=BRODYAGA1A
AT1TE21515	chr1:006640487	0.0	C/6640487-6640989	AT1TE21515 transposable_element AT1TE21515 ID=AT1TE21515; Name=AT1TE21515; Alias=ATREP10A
AT1G05483.1	chr1:006642907	0.0	C/6642907-6643372	AT1G05483.1 lnc_RNA AT1G05483 ID=AT1G05483.1; Parent=AT1G05483; Name=AT1G05483.1; locus_type=long_noncoding_rna
AT1G05487.1	chr1:006642987	0.0	W/6642987-6643519	AT1G05487.1 lnc_RNA AT1G05487 ID=AT1G05487.1; Parent=AT1G05487; Name=AT1G05487.1; locus_type=long_noncoding_rna
AT1G19230.1	chr1:006644189	0.0	W/6644189-6644864,6644937-6645096,6646070-6646118,6646201-6646314,6646392-6646476,6646555-6646817,6646913-6647296,6647389-6647484,6647575-6647690,6647772-6647945,6648028-6648181,6648267-6648458,6648551-6648679,6648761-6648839,6649040-6649149	AT1G19230.1 CDS AT1G19230 ID=AT1G19230.1; Parent=AT1G19230; Name=AT1G19230.1; Note=Riboflavin synthase-like superfamily protein; conf_class=6; computational_description=Riboflavin synthase-like superfamily protein%3B FUNCTIONS IN: in 7 functions%3B INVOLVED IN: defense response%3B LOCATED IN: integral to membrane%2C membrane%3B EXPRESSED IN: 7 plant structures%3B EXPRESSED DURING: petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927)%2C Cytochrome b245%2C heavy chain (InterPro:IPR000778)%2C EF-Hand 1%2C calcium-binding site (InterPro:IPR018247)%2C EF-hand-like domain (InterPro:IPR011992)%2C Ferric reductase-like transmembrane component%2C N-terminal (InterPro:IPR013130)%2C Ferric reductase%2C NAD binding (InterPro:IPR013121)%2C NADPH oxidase Respiratory burst (InterPro:IPR013623)%2C FAD-binding 8 (InterPro:IPR013112)%2C EF-HAND 2 (InterPro:IPR018249)%2C Riboflavin synthase-like beta-barrel (InterPro:IPR017938)%3B BEST Arabidopsis thaliana protein match is: respiratory burst oxidase protein F (TAIR:AT1G64060.1)%3B Has 2473 Blast hits to 2332 proteins in 402 species: Archae - 8%3B Bacteria - 385%3B Metazoa - 719%3B Fungi - 641%3B Plants - 520%3B Viruses - 0%3B Other Eukaryotes - 200 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:9628030, PMID:12372144, PMID:12773379, PMID:15047898, PMID:15923322, PMID:16362328, PMID:16856982, locus:2202210; locus_type=protein_coding
AT1G19230.2	chr1:006644189	0.0	W/6644189-6644864,6644937-6645096,6646070-6646118,6646201-6646314,6646392-6646817,6646913-6647296,6647389-6647484,6647575-6647690,6647772-6647945,6648028-6648181,6648267-6648458,6648551-6648679,6648761-6648839,6649040-6649149	AT1G19230.2 CDS AT1G19230 ID=AT1G19230.2; Parent=AT1G19230; Name=AT1G19230.2; Note=Riboflavin synthase-like superfamily protein; conf_class=3; computational_description=Riboflavin synthase-like superfamily protein%3B FUNCTIONS IN: in 7 functions%3B INVOLVED IN: defense response%3B LOCATED IN: integral to membrane%2C membrane%3B EXPRESSED IN: 7 plant structures%3B EXPRESSED DURING: petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927)%2C Cytochrome b245%2C heavy chain (InterPro:IPR000778)%2C EF-Hand 1%2C calcium-binding site (InterPro:IPR018247)%2C EF-hand-like domain (InterPro:IPR011992)%2C Ferric reductase-like transmembrane component%2C N-terminal (InterPro:IPR013130)%2C Ferric reductase%2C NAD binding (InterPro:IPR013121)%2C NADPH oxidase Respiratory burst (InterPro:IPR013623)%2C FAD-binding 8 (InterPro:IPR013112)%2C EF-HAND 2 (InterPro:IPR018249)%2C Riboflavin synthase-like beta-barrel (InterPro:IPR017938)%3B BEST Arabidopsis thaliana protein match is: respiratory burst oxidase protein F (TAIR:AT1G64060.1)%3B Has 2473 Blast hits to 2332 proteins in 402 species: Archae - 8%3B Bacteria - 385%3B Metazoa - 719%3B Fungi - 641%3B Plants - 520%3B Viruses - 0%3B Other Eukaryotes - 200 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9628030, PMID:12372144, PMID:12773379, PMID:15047898, PMID:15923322, PMID:16362328, PMID:16856982, locus:2202210; locus_type=protein_coding
AT1G19240.1	chr1:006649562	0.0	C/6649562-6649694,6650203-6650384	AT1G19240.1 CDS AT1G19240 ID=AT1G19240.1; Parent=AT1G19240; Name=AT1G19240.1; Note=transmembrane protein; conf_class=2; computational_description=unknown protein%3B Has 24 Blast hits to 24 proteins in 11 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 24%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18315867, PMID:18426585, PMID:20736450, locus:2202145; locus_type=protein_coding
AT1G19250.1	chr1:006650656	0.0	C/6650656-6651022,6651227-6651576,6651663-6651841,6652141-6652381,6652598-6653053	AT1G19250.1 CDS AT1G19250 ID=AT1G19250.1; Parent=AT1G19250; Name=AT1G19250.1; Note=flavin-dependent monooxygenase 1; curator_summary=FMO1 is required for full expression of TIR-NB-LRR-conditioned resistance to avirulent pathogens and for basal resistance to invasive virulent pathogens. Functions in an EDS1-regulated but SA-independent mechanism that promotes resistance and cell death at pathogen infection sites.; conf_class=6; symbol=FMO1; full_name=flavin-dependent monooxygenase 1; computational_description=flavin-dependent monooxygenase 1 (FMO1)%3B FUNCTIONS IN: NADP or NADPH binding%2C oxidoreductase activity%2C monooxygenase activity%2C FAD binding%2C flavin-containing monooxygenase activity%3B INVOLVED IN: in 7 processes%3B LOCATED IN: endomembrane system%2C intrinsic to endoplasmic reticulum membrane%3B EXPRESSED IN: stem%2C leaf whorl%2C sepal%2C root%2C stamen%3B EXPRESSED DURING: 4 anthesis%3B CONTAINS InterPro DOMAIN/s: Dimethylaniline monooxygenase%2C N-oxide-forming (InterPro:IPR012143)%2C Flavin-containing amine oxidase (InterPro:IPR001613)%2C Flavin-containing monooxygenase-like (InterPro:IPR020946)%3B BEST Arabidopsis thaliana protein match is: Flavin-binding monooxygenase family protein (TAIR:AT5G45180.1)%3B Has 7639 Blast hits to 7432 proteins in 837 species: Archae - 6%3B Bacteria - 3396%3B Metazoa - 753%3B Fungi - 1311%3B Plants - 833%3B Viruses - 0%3B Other Eukaryotes - 1340 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:15860015, PMID:15923330, PMID:16531493, PMID:16603661, PMID:16778014, PMID:17142483, PMID:17461789, PMID:17786563, PMID:18650403, PMID:18612100, PMID:19825557, PMID:20444228, PMID:20736450, PMID:21398256, PMID:22995285, PMID:23221596, PMID:23516362, PMID:23874348, PMID:25329965, locus:2202155; locus_type=protein_coding
AT1TE21560	chr1:006654801	0.0	W/6654801-6655609	AT1TE21560 transposable_element AT1TE21560 ID=AT1TE21560; Name=AT1TE21560; Alias=HELITRONY1E
AT1G19260.1	chr1:006657260	0.0	C/6657260-6659569	AT1G19260.1 CDS AT1G19260 ID=AT1G19260.1; Parent=AT1G19260; Name=AT1G19260.1; Note=TTF-type zinc finger protein with HAT dimerization domain-containing protein; conf_class=4; computational_description=TTF-type zinc finger protein with HAT dimerisation domain%3B FUNCTIONS IN: protein dimerization activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906)%2C Zinc finger%2C TTF-type (InterPro:IPR006580)%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G09660.1)%3B Has 1044 Blast hits to 976 proteins in 53 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 607%3B Fungi - 1%3B Plants - 428%3B Viruses - 0%3B Other Eukaryotes - 8 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:16856982, locus:2202165; locus_type=protein_coding
AT1TE21570	chr1:006661365	0.0	C/6661365-6661662	AT1TE21570 transposable_element AT1TE21570 ID=AT1TE21570; Name=AT1TE21570; Alias=ATREP3
AT1TE21575	chr1:006661663	0.0	W/6661663-6662494	AT1TE21575 transposable_element AT1TE21575 ID=AT1TE21575; Name=AT1TE21575; Alias=HELITRONY1B
AT1TE21580	chr1:006662495	0.0	C/6662495-6662607	AT1TE21580 transposable_element AT1TE21580 ID=AT1TE21580; Name=AT1TE21580; Alias=ATREP10B
AT1G19270.1	chr1:006663327	0.0	W/6663327-6663512,6663622-6663715,6663823-6664051,6664151-6664271,6664370-6664453,6664583-6664702,6664805-6665017,6665118-6665296,6665379-6665437,6665532-6665845	AT1G19270.1 CDS AT1G19270 ID=AT1G19270.1; Parent=AT1G19270; Name=AT1G19270.1; Note=DA1; conf_class=2; symbol=DA1; full_name=DA1; computational_description=DA1 (DA1)%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C LIM-type (InterPro:IPR001781)%2C Ubiquitin interacting motif (InterPro:IPR003903)%2C Protein of unknown function DUF3633 (InterPro:IPR022087)%3B BEST Arabidopsis thaliana protein match is: LIM domain-containing protein (TAIR:AT4G36860.1)%3B Has 3538 Blast hits to 2617 proteins in 167 species: Archae - 0%3B Bacteria - 18%3B Metazoa - 3009%3B Fungi - 63%3B Plants - 177%3B Viruses - 0%3B Other Eukaryotes - 271 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16856982, PMID:18483219, PMID:18650403, PMID:18775970, PMID:19892740, PMID:22251317, PMID:24045020, PMID:24585836, locus:2202175; locus_type=protein_coding
AT1G19270.2	chr1:006663327	0.0	W/6663327-6663512,6663622-6663715,6663823-6664051,6664151-6664271,6664370-6664453,6664583-6664702,6664805-6665017,6665118-6665296,6665379-6665437,6665532-6665845	AT1G19270.2 CDS AT1G19270 ID=AT1G19270.2; Parent=AT1G19270; Name=AT1G19270.2; Note=DA1; symbol=DA1; full_name=DA1; Dbxref=PMID:16856982, PMID:18483219, PMID:18650403, PMID:18775970, PMID:19892740, PMID:22251317, PMID:24045020, PMID:24585836, locus:2202175; computational_description=DA1 (DA1)%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C LIM-type (InterPro:IPR001781)%2C Ubiquitin interacting motif (InterPro:IPR003903)%2C Protein of unknown function DUF3633 (InterPro:IPR022087)%3B BEST Arabidopsis thaliana protein match is: LIM domain-containing protein (TAIR:AT4G36860.1)%3B Has 3538 Blast hits to 2617 proteins in 167 species: Archae - 0%3B Bacteria - 18%3B Metazoa - 3009%3B Fungi - 63%3B Plants - 177%3B Viruses - 0%3B Other Eukaryotes - 271 (source: NCBI BLink).; locus_type=protein_coding
AT1G19290.1	chr1:006666249	0.0	W/6666249-6668963	AT1G19290.1 CDS AT1G19290 ID=AT1G19290.1; Parent=AT1G19290; Name=AT1G19290.1; Note=Pentatricopeptide repeat (PPR) superfamily protein; conf_class=4; computational_description=Pentatricopeptide repeat (PPR) superfamily protein%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G55840.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:16856982, locus:2016427; locus_type=protein_coding
AT1G19290.2	chr1:006666249	0.0	W/6666249-6668963	AT1G19290.2 CDS AT1G19290 ID=AT1G19290.2; Parent=AT1G19290; Name=AT1G19290.2; Note=Pentatricopeptide repeat (PPR) superfamily protein; Dbxref=PMID:16856982, locus:2016427; computational_description=Pentatricopeptide repeat (PPR) superfamily protein%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G55840.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; locus_type=protein_coding
AT1G05493.1	chr1:006669408	0.0	C/6669408-6669795	AT1G05493.1 lnc_RNA AT1G05493 ID=AT1G05493.1; Parent=AT1G05493; Name=AT1G05493.1; locus_type=long_noncoding_rna
AT1TE21600	chr1:006669936	0.0	W/6669936-6670131	AT1TE21600 transposable_element AT1TE21600 ID=AT1TE21600; Name=AT1TE21600; Alias=DT1
AT1G05497.1	chr1:006670303	0.0	W/6670303-6670780	AT1G05497.1 lnc_RNA AT1G05497 ID=AT1G05497.1; Parent=AT1G05497; Name=AT1G05497.1; locus_type=long_noncoding_rna
AT1G19300.1	chr1:006671451	0.0	C/6671451-6672506	AT1G19300.1 CDS AT1G19300 ID=AT1G19300.1; Parent=AT1G19300; Name=AT1G19300.1; Note=Nucleotide-diphospho-sugar transferases superfamily protein; curator_summary=The PARVUS/GLZ1 gene encodes a putative family 8 glycosyl transferase that contributes to xylan biosynthesis. Its gene expression shows good co-variance with the IRX3 gene involved in secondary cell wall synthesis. PARVUS/GLZ1 is predicted to have galacturonosyltransferase activity and may be involved in the formation of the complex oligosaccharide sequence present at the reducing end of xylan. PARVUS is expressed in cells undergoing secondary wall thickening%2C and parvus mutants have thinner cell walls.; conf_class=4; symbol=PARVUS; Alias=ATGATL1, GATL1, GALACTURONOSYLTRANSFERASE-LIKE 1, GLZ1, GAOLAOZHUANGREN 1; full_name=PARVUS; computational_description=PARVUS (PARVUS)%3B CONTAINS InterPro DOMAIN/s: Glycosyl transferase%2C family 8 (InterPro:IPR002495)%3B BEST Arabidopsis thaliana protein match is: galacturonosyltransferase-like 2 (TAIR:AT3G50760.1)%3B Has 1825 Blast hits to 1814 proteins in 439 species: Archae - 2%3B Bacteria - 918%3B Metazoa - 149%3B Fungi - 0%3B Plants - 715%3B Viruses - 0%3B Other Eukaryotes - 41 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:15010604, PMID:16367961, PMID:16540543, PMID:16969662, PMID:17149585, PMID:17322407, PMID:15564529, PMID:17991630, PMID:18480120, PMID:19269997, PMID:19825678, PMID:19789274, PMID:21300919, locus:2016432; locus_type=protein_coding
AT1G19310.1	chr1:006676424	0.0	C/6676424-6677104	AT1G19310.1 CDS AT1G19310 ID=AT1G19310.1; Parent=AT1G19310; Name=AT1G19310.1; Note=RING/U-box superfamily protein; conf_class=2; computational_description=RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type%2C conserved site (InterPro:IPR017907)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G23780.1)%3B Has 4673 Blast hits to 4665 proteins in 300 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 2731%3B Fungi - 589%3B Plants - 822%3B Viruses - 25%3B Other Eukaryotes - 500 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11983057, PMID:18775970, locus:2016437; locus_type=protein_coding
AT1G19320.1	chr1:006679327	0.0	W/6679327-6679381,6679490-6680178	AT1G19320.1 CDS AT1G19320 ID=AT1G19320.1; Parent=AT1G19320; Name=AT1G19320.1; Note=Pathogenesis-related thaumatin superfamily protein; conf_class=2; computational_description=Pathogenesis-related thaumatin superfamily protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: response to other organism%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: Thaumatin%2C pathogenesis-related (InterPro:IPR001938)%3B BEST Arabidopsis thaliana protein match is: thaumatin-like protein 3 (TAIR:AT1G75030.1)%3B Has 1611 Blast hits to 1588 proteins in 180 species: Archae - 0%3B Bacteria - 48%3B Metazoa - 52%3B Fungi - 78%3B Plants - 1416%3B Viruses - 5%3B Other Eukaryotes - 12 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18923020, locus:2016442; locus_type=protein_coding
AT1G19330.1	chr1:006680824	0.0	C/6680824-6680940,6681040-6681108,6681206-6681268,6681361-6681515,6681683-6681809,6683078-6683290	AT1G19330.1 CDS AT1G19330 ID=AT1G19330.1; Parent=AT1G19330; Name=AT1G19330.1; Note=histone deacetylase complex subunit; conf_class=2; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75060.1)%3B Has 145 Blast hits to 145 proteins in 43 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 40%3B Fungi - 0%3B Plants - 104%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18315867, locus:2016452; locus_type=protein_coding
AT1G19330.2	chr1:006680824	0.0	C/6680824-6680940,6681040-6681108,6681206-6681268,6681361-6681500,6681683-6681809,6683078-6683290	AT1G19330.2 CDS AT1G19330 ID=AT1G19330.2; Parent=AT1G19330; Name=AT1G19330.2; Note=histone deacetylase complex subunit; conf_class=2; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75060.1)%3B Has 145 Blast hits to 145 proteins in 43 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 40%3B Fungi - 0%3B Plants - 104%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18315867, locus:2016452; locus_type=protein_coding
AT1G19330.3	chr1:006680824	0.0	C/6680824-6680940,6681040-6681108,6681206-6681271,6681361-6681515,6681683-6681809,6683078-6683290	AT1G19330.3 CDS AT1G19330 ID=AT1G19330.3; Parent=AT1G19330; Name=AT1G19330.3; Note=histone deacetylase complex subunit; conf_class=2; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75060.1)%3B Has 145 Blast hits to 145 proteins in 43 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 40%3B Fungi - 0%3B Plants - 104%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18315867, locus:2016452; locus_type=protein_coding
AT1G19340.1	chr1:006684798	0.0	W/6684798-6685293,6685372-6685502,6685618-6685651,6685810-6685885,6685974-6686151,6686245-6686334,6686420-6686519,6686659-6686798	AT1G19340.1 CDS AT1G19340 ID=AT1G19340.1; Parent=AT1G19340; Name=AT1G19340.1; Note=Methyltransferase MT-A70 family protein; conf_class=2; computational_description=Methyltransferase MT-A70 family protein%3B FUNCTIONS IN: S-adenosylmethionine-dependent methyltransferase activity%2C methyltransferase activity%2C nucleic acid binding%3B INVOLVED IN: methylation%2C nucleobase%2C nucleoside%2C nucleotide and nucleic acid metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 9 plant structures%3B EXPRESSED DURING: 4 anthesis%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: DNA methylase%2C N-6 adenine-specific%2C conserved site (InterPro:IPR002052)%2C MT-A70 (InterPro:IPR007757)%3B Has 622 Blast hits to 622 proteins in 244 species: Archae - 4%3B Bacteria - 240%3B Metazoa - 93%3B Fungi - 88%3B Plants - 72%3B Viruses - 2%3B Other Eukaryotes - 123 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2016462; locus_type=protein_coding
AT1G19350.3	chr1:006688680	0.0	W/6688680-6688738,6688834-6689104,6689422-6690165	AT1G19350.3 CDS AT1G19350 ID=AT1G19350.3; Parent=AT1G19350; Name=AT1G19350.3; Note=Brassinosteroid signaling positive regulator (BZR1) family protein; curator_summary=Encodes brassinosteroid (BR) signalling protein that accumulates in the nucleus as dephosphorylated form in response to BRs. Is phosphorylated by the BIN2 GSK3 kinase. It synergistically interacts with BIM1 to bind to E box sequences (CANNTG). The protein contains a nuclear localization signal (NLS)%2C followed by a highly conserved amino-terminal domain (N) shared by all family members%2C a BIN2 phosphorylation domain (P)%2C a PEST motif%2C involved in protein degradation in the absence of BR%2C and a carboxyl-terminal domain. BES1 can interact with the ELF6 and REF6 Jumonji N/C-domain containing proteins and may direct them to modify histone methylation upstream of some brassinosteroid responsive-genes. Works with BRAVO to regulate QC division in the root.; conf_class=2; symbol=BES1; Alias=BZR2, BRASSINAZOLE-RESISTANT 2; full_name=BRI1-EMS-SUPPRESSOR 1; computational_description=BRI1-EMS-SUPPRESSOR 1 (BES1)%3B CONTAINS InterPro DOMAIN/s: BZR1%2C transcriptional repressor (InterPro:IPR008540)%3B BEST Arabidopsis thaliana protein match is: Brassinosteroid signalling positive regulator (BZR1) family protein (TAIR:AT1G75080.2)%3B Has 2916 Blast hits to 477 proteins in 80 species: Archae - 0%3B Bacteria - 14%3B Metazoa - 122%3B Fungi - 71%3B Plants - 275%3B Viruses - 0%3B Other Eukaryotes - 2434 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12114546, PMID:12427989, PMID:12007405, PMID:11970900, PMID:14977918, PMID:15328536, PMID:15680330, PMID:17138891, PMID:17548335, PMID:17681130, PMID:18467490, PMID:19170933, PMID:19473327, PMID:16672972, PMID:16807820, PMID:17681126, PMID:19240210, PMID:19820315, PMID:20128883, PMID:20231470, PMID:20387035, PMID:20522560, PMID:20387034, PMID:21074725, PMID:21214652, PMID:21617247, PMID:21270053, PMID:22100645, PMID:22184234, PMID:21855796, PMID:22253607, PMID:22995285, PMID:22961663, PMID:23169658, PMID:23603943, PMID:23580754, PMID:23568410, PMID:23818580, PMID:24019147, PMID:24374469, PMID:23410833, PMID:24369836, PMID:24547704, PMID:24838002, PMID:24981610, PMID:25136063, PMID:25609555, PMID:25649439, locus:2016472; locus_type=protein_coding
AT1G19350.1	chr1:006688841	0.0	W/6688841-6689104,6689422-6690165	AT1G19350.1 CDS AT1G19350 ID=AT1G19350.1; Parent=AT1G19350; Name=AT1G19350.1; Note=Brassinosteroid signaling positive regulator (BZR1) family protein; curator_summary=Encodes brassinosteroid (BR) signalling protein that accumulates in the nucleus as dephosphorylated form in response to BRs. Is phosphorylated by the BIN2 GSK3 kinase. It synergistically interacts with BIM1 to bind to E box sequences (CANNTG). The protein contains a nuclear localization signal (NLS)%2C followed by a highly conserved amino-terminal domain (N) shared by all family members%2C a BIN2 phosphorylation domain (P)%2C a PEST motif%2C involved in protein degradation in the absence of BR%2C and a carboxyl-terminal domain. BES1 can interact with the ELF6 and REF6 Jumonji N/C-domain containing proteins and may direct them to modify histone methylation upstream of some brassinosteroid responsive-genes. Works with BRAVO to regulate QC division in the root.; conf_class=2; symbol=BES1; Alias=BZR2, BRASSINAZOLE-RESISTANT 2; full_name=BRI1-EMS-SUPPRESSOR 1; computational_description=BRI1-EMS-SUPPRESSOR 1 (BES1)%3B CONTAINS InterPro DOMAIN/s: BZR1%2C transcriptional repressor (InterPro:IPR008540)%3B BEST Arabidopsis thaliana protein match is: Brassinosteroid signalling positive regulator (BZR1) family protein (TAIR:AT1G75080.2)%3B Has 2916 Blast hits to 477 proteins in 80 species: Archae - 0%3B Bacteria - 14%3B Metazoa - 122%3B Fungi - 71%3B Plants - 275%3B Viruses - 0%3B Other Eukaryotes - 2434 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12114546, PMID:12427989, PMID:12007405, PMID:11970900, PMID:14977918, PMID:15328536, PMID:15680330, PMID:17138891, PMID:17548335, PMID:17681130, PMID:18467490, PMID:19170933, PMID:19473327, PMID:16672972, PMID:16807820, PMID:17681126, PMID:19240210, PMID:19820315, PMID:20128883, PMID:20231470, PMID:20387035, PMID:20522560, PMID:20387034, PMID:21074725, PMID:21214652, PMID:21617247, PMID:21270053, PMID:22100645, PMID:22184234, PMID:21855796, PMID:22253607, PMID:22995285, PMID:22961663, PMID:23169658, PMID:23603943, PMID:23580754, PMID:23568410, PMID:23818580, PMID:24019147, PMID:24374469, PMID:23410833, PMID:24369836, PMID:24547704, PMID:24838002, PMID:24981610, PMID:25136063, PMID:25609555, PMID:25649439, locus:2016472; locus_type=protein_coding
AT1G19350.4	chr1:006688841	0.0	W/6688841-6689104,6689422-6690165	AT1G19350.4 CDS AT1G19350 ID=AT1G19350.4; Parent=AT1G19350; Name=AT1G19350.4; Note=Brassinosteroid signaling positive regulator (BZR1) family protein; curator_summary=Encodes brassinosteroid (BR) signalling protein that accumulates in the nucleus as dephosphorylated form in response to BRs. Is phosphorylated by the BIN2 GSK3 kinase. It synergistically interacts with BIM1 to bind to E box sequences (CANNTG). The protein contains a nuclear localization signal (NLS)%2C followed by a highly conserved amino-terminal domain (N) shared by all family members%2C a BIN2 phosphorylation domain (P)%2C a PEST motif%2C involved in protein degradation in the absence of BR%2C and a carboxyl-terminal domain. BES1 can interact with the ELF6 and REF6 Jumonji N/C-domain containing proteins and may direct them to modify histone methylation upstream of some brassinosteroid responsive-genes. Works with BRAVO to regulate QC division in the root.; conf_class=2; symbol=BES1; Alias=BZR2, BRASSINAZOLE-RESISTANT 2; full_name=BRI1-EMS-SUPPRESSOR 1; computational_description=BRI1-EMS-SUPPRESSOR 1 (BES1)%3B CONTAINS InterPro DOMAIN/s: BZR1%2C transcriptional repressor (InterPro:IPR008540)%3B BEST Arabidopsis thaliana protein match is: Brassinosteroid signalling positive regulator (BZR1) family protein (TAIR:AT1G75080.2)%3B Has 2916 Blast hits to 477 proteins in 80 species: Archae - 0%3B Bacteria - 14%3B Metazoa - 122%3B Fungi - 71%3B Plants - 275%3B Viruses - 0%3B Other Eukaryotes - 2434 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12114546, PMID:12427989, PMID:12007405, PMID:11970900, PMID:14977918, PMID:15328536, PMID:15680330, PMID:17138891, PMID:17548335, PMID:17681130, PMID:18467490, PMID:19170933, PMID:19473327, PMID:16672972, PMID:16807820, PMID:17681126, PMID:19240210, PMID:19820315, PMID:20128883, PMID:20231470, PMID:20387035, PMID:20522560, PMID:20387034, PMID:21074725, PMID:21214652, PMID:21617247, PMID:21270053, PMID:22100645, PMID:22184234, PMID:21855796, PMID:22253607, PMID:22995285, PMID:22961663, PMID:23169658, PMID:23603943, PMID:23580754, PMID:23568410, PMID:23818580, PMID:24019147, PMID:24374469, PMID:23410833, PMID:24369836, PMID:24547704, PMID:24838002, PMID:24981610, PMID:25136063, PMID:25609555, PMID:25649439, locus:2016472; locus_type=protein_coding
AT1G19350.5	chr1:006688841	0.0	W/6688841-6689104,6689422-6690165	AT1G19350.5 CDS AT1G19350 ID=AT1G19350.5; Parent=AT1G19350; Name=AT1G19350.5; Note=Brassinosteroid signaling positive regulator (BZR1) family protein; curator_summary=Encodes brassinosteroid (BR) signalling protein that accumulates in the nucleus as dephosphorylated form in response to BRs. Is phosphorylated by the BIN2 GSK3 kinase. It synergistically interacts with BIM1 to bind to E box sequences (CANNTG). The protein contains a nuclear localization signal (NLS)%2C followed by a highly conserved amino-terminal domain (N) shared by all family members%2C a BIN2 phosphorylation domain (P)%2C a PEST motif%2C involved in protein degradation in the absence of BR%2C and a carboxyl-terminal domain. BES1 can interact with the ELF6 and REF6 Jumonji N/C-domain containing proteins and may direct them to modify histone methylation upstream of some brassinosteroid responsive-genes. Works with BRAVO to regulate QC division in the root.; conf_class=2; symbol=BES1; Alias=BZR2, BRASSINAZOLE-RESISTANT 2; full_name=BRI1-EMS-SUPPRESSOR 1; computational_description=BRI1-EMS-SUPPRESSOR 1 (BES1)%3B CONTAINS InterPro DOMAIN/s: BZR1%2C transcriptional repressor (InterPro:IPR008540)%3B BEST Arabidopsis thaliana protein match is: Brassinosteroid signalling positive regulator (BZR1) family protein (TAIR:AT1G75080.2)%3B Has 2916 Blast hits to 477 proteins in 80 species: Archae - 0%3B Bacteria - 14%3B Metazoa - 122%3B Fungi - 71%3B Plants - 275%3B Viruses - 0%3B Other Eukaryotes - 2434 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12114546, PMID:12427989, PMID:12007405, PMID:11970900, PMID:14977918, PMID:15328536, PMID:15680330, PMID:17138891, PMID:17548335, PMID:17681130, PMID:18467490, PMID:19170933, PMID:19473327, PMID:16672972, PMID:16807820, PMID:17681126, PMID:19240210, PMID:19820315, PMID:20128883, PMID:20231470, PMID:20387035, PMID:20522560, PMID:20387034, PMID:21074725, PMID:21214652, PMID:21617247, PMID:21270053, PMID:22100645, PMID:22184234, PMID:21855796, PMID:22253607, PMID:22995285, PMID:22961663, PMID:23169658, PMID:23603943, PMID:23580754, PMID:23568410, PMID:23818580, PMID:24019147, PMID:24374469, PMID:23410833, PMID:24369836, PMID:24547704, PMID:24838002, PMID:24981610, PMID:25136063, PMID:25609555, PMID:25649439, locus:2016472; locus_type=protein_coding
AT1G19350.6	chr1:006688841	0.0	W/6688841-6689104,6689422-6690165	AT1G19350.6 CDS AT1G19350 ID=AT1G19350.6; Parent=AT1G19350; Name=AT1G19350.6; Note=Brassinosteroid signaling positive regulator (BZR1) family protein; curator_summary=Encodes brassinosteroid (BR) signalling protein that accumulates in the nucleus as dephosphorylated form in response to BRs. Is phosphorylated by the BIN2 GSK3 kinase. It synergistically interacts with BIM1 to bind to E box sequences (CANNTG). The protein contains a nuclear localization signal (NLS)%2C followed by a highly conserved amino-terminal domain (N) shared by all family members%2C a BIN2 phosphorylation domain (P)%2C a PEST motif%2C involved in protein degradation in the absence of BR%2C and a carboxyl-terminal domain. BES1 can interact with the ELF6 and REF6 Jumonji N/C-domain containing proteins and may direct them to modify histone methylation upstream of some brassinosteroid responsive-genes. Works with BRAVO to regulate QC division in the root.; conf_class=2; symbol=BES1; Alias=BZR2, BRASSINAZOLE-RESISTANT 2; full_name=BRI1-EMS-SUPPRESSOR 1; computational_description=BRI1-EMS-SUPPRESSOR 1 (BES1)%3B CONTAINS InterPro DOMAIN/s: BZR1%2C transcriptional repressor (InterPro:IPR008540)%3B BEST Arabidopsis thaliana protein match is: Brassinosteroid signalling positive regulator (BZR1) family protein (TAIR:AT1G75080.2)%3B Has 2916 Blast hits to 477 proteins in 80 species: Archae - 0%3B Bacteria - 14%3B Metazoa - 122%3B Fungi - 71%3B Plants - 275%3B Viruses - 0%3B Other Eukaryotes - 2434 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12114546, PMID:12427989, PMID:12007405, PMID:11970900, PMID:14977918, PMID:15328536, PMID:15680330, PMID:17138891, PMID:17548335, PMID:17681130, PMID:18467490, PMID:19170933, PMID:19473327, PMID:16672972, PMID:16807820, PMID:17681126, PMID:19240210, PMID:19820315, PMID:20128883, PMID:20231470, PMID:20387035, PMID:20522560, PMID:20387034, PMID:21074725, PMID:21214652, PMID:21617247, PMID:21270053, PMID:22100645, PMID:22184234, PMID:21855796, PMID:22253607, PMID:22995285, PMID:22961663, PMID:23169658, PMID:23603943, PMID:23580754, PMID:23568410, PMID:23818580, PMID:24019147, PMID:24374469, PMID:23410833, PMID:24369836, PMID:24547704, PMID:24838002, PMID:24981610, PMID:25136063, PMID:25609555, PMID:25649439, locus:2016472; locus_type=protein_coding
AT1G19360.1	chr1:006690672	0.0	C/6690672-6691787,6692041-6692211	AT1G19360.1 CDS AT1G19360 ID=AT1G19360.1; Parent=AT1G19360; Name=AT1G19360.1; Note=Nucleotide-diphospho-sugar transferase family protein; curator_summary=Encodes an arabinosyltransferase that modifies extensin proteins in root hair cells.; conf_class=2; symbol=RRA3; full_name=reduced residual arabinose 3; computational_description=Nucleotide-diphospho-sugar transferase family protein%3B LOCATED IN: endoplasmic reticulum%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388)%2C Nucleotide-diphospho-sugar transferase%2C predicted (InterPro:IPR005069)%3B BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferase family protein (TAIR:AT1G75110.1)%3B Has 297 Blast hits to 291 proteins in 24 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 2%3B Plants - 280%3B Viruses - 0%3B Other Eukaryotes - 15 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17401635, PMID:18650403, PMID:18793471, PMID:21680836, locus:2016487; locus_type=protein_coding
AT1G19360.2	chr1:006690672	0.0	C/6690672-6691787,6692041-6692211	AT1G19360.2 CDS AT1G19360 ID=AT1G19360.2; Parent=AT1G19360; Name=AT1G19360.2; Note=Nucleotide-diphospho-sugar transferase family protein; symbol=RRA3; full_name=reduced residual arabinose 3; Dbxref=PMID:17401635, PMID:18650403, PMID:18793471, PMID:21680836, locus:2016487; curator_summary=Encodes an arabinosyltransferase that modifies extensin proteins in root hair cells.; computational_description=Nucleotide-diphospho-sugar transferase family protein%3B LOCATED IN: endoplasmic reticulum%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388)%2C Nucleotide-diphospho-sugar transferase%2C predicted (InterPro:IPR005069)%3B BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferase family protein (TAIR:AT1G75110.1)%3B Has 297 Blast hits to 291 proteins in 24 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 2%3B Plants - 280%3B Viruses - 0%3B Other Eukaryotes - 15 (source: NCBI BLink).; locus_type=protein_coding
AT1G19370.1	chr1:006692904	0.0	C/6692904-6694721	AT1G19370.1 CDS AT1G19370 ID=AT1G19370.1; Parent=AT1G19370; Name=AT1G19370.1; Note=membrane protein; conf_class=1; computational_description=unknown protein%3B LOCATED IN: endoplasmic reticulum%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75140.1)%3B Has 45 Blast hits to 43 proteins in 15 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 44%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16618929, locus:2016497; locus_type=protein_coding
AT1G19371.1	chr1:006695420	0.0	C/6695420-6695609	AT1G19371.1 miRNA_primary_transcript AT1G19371 ID=AT1G19371.1; Parent=AT1G19371; Alias=p_MI0000982; Name=ath-MIR169h; symbol=MIR169H; curator_summary=Encodes a microRNA that targets several HAP2 family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UAGCCAAGGAUGACUUGCCUG; Note=microRNA ath-MIR169h precursor; full_name=microRNA169H; Dbxref=PMID:15851028, PMID:19854858, locus:4010713454, PMID:15851028, PMID:19854858, locus:4010713454; locus_type=mirna
ath-miR169h	chr1:006695544	0.0	C/6695544-6695564	ath-miR169h miRNA ath-miR169h ID=ath-miR169h; Alias=MIMAT0000913; Name=ath-miR169h; Derives_from=AT1G19371.1; Note=microRNA ath-miR169h; computational_description=mature miRNA accession:MIMAT0000913
AT1G19373.1	chr1:006697178	0.0	W/6697178-6697253	AT1G19373.1 snoRNA AT1G19373 ID=AT1G19373.1; Parent=AT1G19373; computational_description=snoRNA; Dbxref=PMID:22820990, locus:3688040; Name=AT1G19373.1; Note=snoRNA; locus_type=small_nucleolar_rna
AT1G19376.1	chr1:006697438	0.0	W/6697438-6697524	AT1G19376.1 snoRNA AT1G19376 ID=AT1G19376.1; Parent=AT1G19376; computational_description=snoRNA; Dbxref=PMID:22820990, locus:1005716762; Name=AT1G19376.1; Note=snoRNA; locus_type=small_nucleolar_rna
AT1G19380.1	chr1:006698129	0.0	W/6698129-6698344,6698435-6698662	AT1G19380.1 CDS AT1G19380 ID=AT1G19380.1; Parent=AT1G19380; Name=AT1G19380.1; Note=sugar%2C putative (DUF1195); conf_class=2; computational_description=Protein of unknown function (DUF1195)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1195 (InterPro:IPR010608)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1195) (TAIR:AT4G36660.1)%3B Has 67 Blast hits to 67 proteins in 15 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 67%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15632092, PMID:15720654, PMID:17337630, PMID:18552355, PMID:18775970, PMID:20736450, locus:2016372; locus_type=protein_coding
AT1G08935.1	chr1:006700455	0.0	W/6700455-6700686	AT1G08935.1 transcript_region AT1G08935 ID=AT1G08935.1; Parent=AT1G08935; computational_description=novel transcribed region; Name=AT1G08935.1; locus_type=novel_transcribed_region
AT1G19390.1	chr1:006700772	0.0	C/6700772-6702000,6702102-6702224,6702354-6703368	AT1G19390.1 CDS AT1G19390 ID=AT1G19390.1; Parent=AT1G19390; Name=AT1G19390.1; Note=Wall-associated kinase family protein; conf_class=4; computational_description=Wall-associated kinase family protein%3B FUNCTIONS IN: kinase activity%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: endomembrane system%2C integral to membrane%3B CONTAINS InterPro DOMAIN/s: Wall-associated kinase (InterPro:IPR013695)%2C EGF-like calcium-binding%2C conserved site (InterPro:IPR018097)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: wall-associated kinase%2C putative (TAIR:AT4G31100.1)%3B Has 120805 Blast hits to 118813 proteins in 4422 species: Archae - 117%3B Bacteria - 13519%3B Metazoa - 45006%3B Fungi - 10268%3B Plants - 33776%3B Viruses - 486%3B Other Eukaryotes - 17633 (source: NCBI BLink).; conf_rating=***; Dbxref=locus:2016377; locus_type=protein_coding
AT1TE21710	chr1:006704197	0.0	W/6704197-6705814,6705810-6709404	AT1TE21710 transposable_element AT1TE21710 ID=AT1TE21710; Name=AT1TE21710; Alias=META1
AT1G19392.1	chr1:006708557	0.0	W/6708557-6709175	AT1G19392.1 CDS AT1G19392 ID=AT1G19392.1; Parent=AT1G19392; Name=AT1G19392.1; index=1; computational_description=copia-like retrotransposon family%2C has a 3.5e-10 P-value blast match to reverse transcriptase (Ty1_Copia-element) (Arabidopsis thaliana); Dbxref=locus:1006230702; Note=transposable_element_gene; locus_type=transposable_element_gene
AT1TE21715	chr1:006709616	0.0	W/6709616-6709729	AT1TE21715 transposable_element AT1TE21715 ID=AT1TE21715; Name=AT1TE21715; Alias=TAG3N1
AT1G19394.1	chr1:006709773	0.0	W/6709773-6709783,6709889-6709958,6710468-6710605	AT1G19394.1 CDS AT1G19394 ID=AT1G19394.1; Parent=AT1G19394; Name=AT1G19394.1; Note=hypothetical protein; conf_class=4; computational_description=unknown protein%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).; conf_rating=***; Dbxref=locus:1006230700; locus_type=protein_coding
AT1G19396.1	chr1:006709873	0.0	W/6709873-6709958,6711420-6711480	AT1G19396.1 CDS AT1G19396 ID=AT1G19396.1; Parent=AT1G19396; Name=AT1G19396.1; Note=hypothetical protein; conf_class=3; computational_description=unknown protein.; conf_rating=****; Dbxref=locus:6530298142; locus_type=protein_coding
AT1G19396.2	chr1:006709873	0.0	W/6709873-6709958,6710115-6710223	AT1G19396.2 CDS AT1G19396 ID=AT1G19396.2; Parent=AT1G19396; Name=AT1G19396.2; Note=hypothetical protein; conf_class=3; computational_description=unknown protein.; conf_rating=****; Dbxref=locus:6530298142; locus_type=protein_coding
AT1G19396.3	chr1:006709873	0.0	W/6709873-6709958,6711414-6711480	AT1G19396.3 CDS AT1G19396 ID=AT1G19396.3; Parent=AT1G19396; Name=AT1G19396.3; Note=hypothetical protein; conf_class=3; computational_description=unknown protein.; conf_rating=****; Dbxref=locus:6530298142; locus_type=protein_coding
AT1G19397.1	chr1:006711040	0.0	W/6711040-6711336	AT1G19397.1 CDS AT1G19397 ID=AT1G19397.1; Parent=AT1G19397; Name=AT1G19397.1; Note=transmembrane protein; conf_class=2; computational_description=unknown protein%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:1006230701; locus_type=protein_coding
AT1G19400.1	chr1:006712222	0.0	C/6712222-6712437,6712981-6713676	AT1G19400.1 CDS AT1G19400 ID=AT1G19400.1; Parent=AT1G19400; Name=AT1G19400.1; Note=Erythronate-4-phosphate dehydrogenase family protein; conf_class=2; computational_description=Erythronate-4-phosphate dehydrogenase family protein%3B BEST Arabidopsis thaliana protein match is: Erythronate-4-phosphate dehydrogenase family protein (TAIR:AT1G75180.3)%3B Has 144 Blast hits to 144 proteins in 19 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 144%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2016382; locus_type=protein_coding
AT1G19400.2	chr1:006712222	0.0	C/6712222-6712437,6712981-6713676	AT1G19400.2 CDS AT1G19400 ID=AT1G19400.2; Parent=AT1G19400; Name=AT1G19400.2; Note=Erythronate-4-phosphate dehydrogenase family protein; conf_class=2; computational_description=Erythronate-4-phosphate dehydrogenase family protein%3B BEST Arabidopsis thaliana protein match is: Erythronate-4-phosphate dehydrogenase family protein (TAIR:AT1G75180.3)%3B Has 144 Blast hits to 144 proteins in 19 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 144%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2016382; locus_type=protein_coding
AT1G19400.3	chr1:006712222	0.0	C/6712222-6712437,6712981-6713676	AT1G19400.3 CDS AT1G19400 ID=AT1G19400.3; Parent=AT1G19400; Name=AT1G19400.3; Note=Erythronate-4-phosphate dehydrogenase family protein; Dbxref=locus:2016382; computational_description=Erythronate-4-phosphate dehydrogenase family protein%3B BEST Arabidopsis thaliana protein match is: Erythronate-4-phosphate dehydrogenase family protein (TAIR:AT1G75180.3)%3B Has 144 Blast hits to 144 proteins in 19 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 144%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; locus_type=protein_coding
AT1G19400.4	chr1:006712948	0.0	C/6712948-6713676	AT1G19400.4 CDS AT1G19400 ID=AT1G19400.4; Parent=AT1G19400; Name=AT1G19400.4; Note=Erythronate-4-phosphate dehydrogenase family protein; computational_description=Erythronate-4-phosphate dehydrogenase family protein%3B BEST Arabidopsis thaliana protein match is: Erythronate-4-phosphate dehydrogenase family protein (TAIR:AT1G75180.3)%3B Has 144 Blast hits to 144 proteins in 19 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 144%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=locus:2016382; locus_type=protein_coding
AT1G19410.1	chr1:006714492	0.0	C/6714492-6714632,6714789-6714920,6715001-6715138,6715228-6715268,6715507-6716249,6716327-6716439	AT1G19410.1 CDS AT1G19410 ID=AT1G19410.1; Parent=AT1G19410; Name=AT1G19410.1; Note=FBD / Leucine Rich Repeat domains containing protein; conf_class=9; computational_description=FBD / Leucine Rich Repeat domains containing protein%3B CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596)%2C Leucine-rich repeat 2 (InterPro:IPR013101)%3B BEST Arabidopsis thaliana protein match is: Protein with RNI-like/FBD-like domains (TAIR:AT5G62970.1)%3B Has 783 Blast hits to 763 proteins in 11 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 783%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*; Dbxref=locus:2016387; locus_type=protein_coding
AT1TE21725	chr1:006715364	0.0	C/6715364-6715546	AT1TE21725 transposable_element AT1TE21725 ID=AT1TE21725; Name=AT1TE21725; Alias=RP1_AT
AT1G05503.1	chr1:006718602	0.0	W/6718602-6719196	AT1G05503.1 transcript_region AT1G05503 ID=AT1G05503.1; Parent=AT1G05503; computational_description=novel transcribed region%3B detected in root%2C carpel%2C root apical meristem%2C receptacle%2C leaf%2C dark-grown seedling%2C light-grown seedling%2C flower%2C aerial%2C shoot apical meristem; Name=AT1G05503.1; locus_type=novel_transcribed_region
AT1TE21735	chr1:006719325	0.0	W/6719325-6720196,6720181-6720759	AT1TE21735 transposable_element AT1TE21735 ID=AT1TE21735; Name=AT1TE21735; Alias=ATCOPIA14
AT1G19415.1	chr1:006719448	0.0	W/6719448-6720654	AT1G19415.1 CDS AT1G19415 ID=AT1G19415.1; Parent=AT1G19415; Name=AT1G19415.1; index=1; computational_description=copia-like retrotransposon family%2C has a 6.1e-43 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family); Dbxref=locus:2824848; Note=transposable_element_gene; locus_type=transposable_element_gene
AT1G19420.1	chr1:006721417	0.0	W/6721417-6724151	AT1G19420.1 pseudogenic_transcript AT1G19420 ID=AT1G19420.1; Parent=AT1G19420; Name=AT1G19420.1; Note=pseudogene; computational_description=pseudogene%2C CHP-rich zinc finger protein; Dbxref=locus:2824853; locus_type=pseudogene
AT1G19430.1	chr1:006724669	0.0	C/6724669-6724867,6724955-6725149,6725241-6725483,6725581-6725755,6725923-6726015,6726097-6726367,6726456-6726605,6726685-6727533	AT1G19430.1 CDS AT1G19430 ID=AT1G19430.1; Parent=AT1G19430; Name=AT1G19430.1; Note=S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; conf_class=1; computational_description=S-adenosyl-L-methionine-dependent methyltransferases superfamily protein%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248%2C methyltransferase putative (InterPro:IPR004159)%3B BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT5G64030.1)%3B Has 8058 Blast hits to 6201 proteins in 616 species: Archae - 19%3B Bacteria - 712%3B Metazoa - 2431%3B Fungi - 867%3B Plants - 1254%3B Viruses - 124%3B Other Eukaryotes - 2651 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16618929, locus:2016392; locus_type=protein_coding
AT1G19430.3	chr1:006724669	0.0	C/6724669-6724867,6724955-6725149,6725241-6725483,6725581-6725755,6725923-6726015,6726097-6726367,6726456-6726605,6726685-6727533	AT1G19430.3 CDS AT1G19430 ID=AT1G19430.3; Parent=AT1G19430; Name=AT1G19430.3; Note=S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Dbxref=PMID:16618929, locus:2016392; computational_description=S-adenosyl-L-methionine-dependent methyltransferases superfamily protein%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248%2C methyltransferase putative (InterPro:IPR004159)%3B BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT5G64030.1)%3B Has 8058 Blast hits to 6201 proteins in 616 species: Archae - 19%3B Bacteria - 712%3B Metazoa - 2431%3B Fungi - 867%3B Plants - 1254%3B Viruses - 124%3B Other Eukaryotes - 2651 (source: NCBI BLink).; locus_type=protein_coding
AT1G19430.2	chr1:006725204	0.0	C/6725204-6725483,6725581-6725755,6725923-6726015,6726097-6726367,6726456-6726605,6726685-6727533	AT1G19430.2 CDS AT1G19430 ID=AT1G19430.2; Parent=AT1G19430; Name=AT1G19430.2; Note=S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; computational_description=S-adenosyl-L-methionine-dependent methyltransferases superfamily protein%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248%2C methyltransferase putative (InterPro:IPR004159)%3B BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT5G64030.1)%3B Has 8058 Blast hits to 6201 proteins in 616 species: Archae - 19%3B Bacteria - 712%3B Metazoa - 2431%3B Fungi - 867%3B Plants - 1254%3B Viruses - 124%3B Other Eukaryotes - 2651 (source: NCBI BLink).; Dbxref=PMID:16618929, locus:2016392; locus_type=protein_coding
AT1G19440.1	chr1:006729119	0.0	W/6729119-6730669	AT1G19440.1 CDS AT1G19440 ID=AT1G19440.1; Parent=AT1G19440; Name=AT1G19440.1; Note=3-ketoacyl-CoA synthase 4; curator_summary=Encodes KCS4%2C a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).; conf_class=1; symbol=KCS4; full_name=3-ketoacyl-CoA synthase 4; computational_description=3-ketoacyl-CoA synthase 4 (KCS4)%3B FUNCTIONS IN: transferase activity%2C transferring acyl groups other than amino-acyl groups%2C catalytic activity%3B INVOLVED IN: very long-chain fatty acid metabolic process%2C cuticle development%3B LOCATED IN: membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039)%2C Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392)%2C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747)%2C FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601)%2C Thiolase-like%2C subgroup (InterPro:IPR016038)%3B BEST Arabidopsis thaliana protein match is: 3-ketoacyl-CoA synthase 9 (TAIR:AT2G16280.1)%3B Has 4090 Blast hits to 4073 proteins in 972 species: Archae - 0%3B Bacteria - 1351%3B Metazoa - 0%3B Fungi - 9%3B Plants - 2623%3B Viruses - 0%3B Other Eukaryotes - 107 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:10330468, PMID:15037448, PMID:15914083, PMID:16449229, PMID:17551672, PMID:18465198, PMID:18775970, PMID:23505340, locus:2016397; locus_type=protein_coding
AT1G19450.1	chr1:006731671	0.0	C/6731671-6731898,6731981-6732040,6732137-6732202,6732293-6732352,6732447-6732509,6732575-6732621,6732720-6732804,6732887-6732967,6733044-6733136,6733222-6733286,6733395-6733470,6733566-6733631,6733721-6733786,6733875-6733934,6734050-6734139,6734251-6734313,6734436-6734633	AT1G19450.1 CDS AT1G19450 ID=AT1G19450.1; Parent=AT1G19450; Name=AT1G19450.1; Note=Major facilitator superfamily protein; conf_class=2; computational_description=Major facilitator superfamily protein%3B FUNCTIONS IN: carbohydrate transmembrane transporter activity%2C sugar:hydrogen symporter activity%3B INVOLVED IN: transport%2C transmembrane transport%3B LOCATED IN: plasma membrane%2C vacuole%2C membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Sugar transporter%2C conserved site (InterPro:IPR005829)%2C Major facilitator superfamily (InterPro:IPR020846)%2C General substrate transporter (InterPro:IPR005828)%2C Sugar/inositol transporter (InterPro:IPR003663)%2C Major facilitator superfamily%2C general substrate transporter (InterPro:IPR016196)%3B BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G75220.1)%3B Has 32354 Blast hits to 31683 proteins in 2302 species: Archae - 652%3B Bacteria - 16202%3B Metazoa - 5205%3B Fungi - 6407%3B Plants - 2489%3B Viruses - 2%3B Other Eukaryotes - 1397 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15695462, PMID:16581873, PMID:17379213, PMID:18441213, PMID:18650403, PMID:18775970, PMID:20736450, PMID:23383346, locus:2016407; locus_type=protein_coding
AT1TE21780	chr1:006734935	0.0	C/6734935-6734954	AT1TE21780 transposable_element AT1TE21780 ID=AT1TE21780; Name=AT1TE21780; Alias=ATREP5
AT1TE21785	chr1:006734955	0.0	C/6734955-6735678	AT1TE21785 transposable_element AT1TE21785 ID=AT1TE21785; Name=AT1TE21785; Alias=ATREP3
AT1TE21790	chr1:006735679	0.0	W/6735679-6737670	AT1TE21790 transposable_element AT1TE21790 ID=AT1TE21790; Name=AT1TE21790; Alias=ATREP3
AT1TE21795	chr1:006737671	0.0	W/6737671-6737763	AT1TE21795 transposable_element AT1TE21795 ID=AT1TE21795; Name=AT1TE21795; Alias=HELITRONY3
AT1G19460.1	chr1:006738484	0.0	W/6738484-6739734	AT1G19460.1 CDS AT1G19460 ID=AT1G19460.1; Parent=AT1G19460; Name=AT1G19460.1; Note=Galactose oxidase/kelch repeat superfamily protein; conf_class=8; computational_description=Galactose oxidase/kelch repeat superfamily protein%3B CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch%2C beta-propeller (InterPro:IPR011043)%2C Kelch repeat type 1 (InterPro:IPR006652)%2C Kelch related (InterPro:IPR013089)%2C Kelch-type beta propeller (InterPro:IPR015915)%3B BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G19470.1)%3B Has 1605 Blast hits to 1542 proteins in 141 species: Archae - 4%3B Bacteria - 96%3B Metazoa - 403%3B Fungi - 4%3B Plants - 1026%3B Viruses - 35%3B Other Eukaryotes - 37 (source: NCBI BLink).; conf_rating=*; Dbxref=locus:2016412; locus_type=protein_coding
AT1G19464.1	chr1:006740500	0.0	W/6740500-6740591	AT1G19464.1 miRNA_primary_transcript AT1G19464 ID=AT1G19464.1; Parent=AT1G19464; Alias=p_MI0005441; Name=ath-MIR864; symbol=MIR864A; curator_summary=Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UCAGGUAUGAUUGACUUCAAA; Note=microRNA ath-MIR864 precursor; full_name=microRNA864A; Dbxref=locus:4515102550, locus:4515102550; locus_type=mirna
ath-miR864-5p	chr1:006740503	0.0	W/6740503-6740523	ath-miR864-5p miRNA ath-miR864-5p ID=ath-miR864-5p; Alias=MIMAT0004311; Name=ath-miR864-5p; Derives_from=AT1G19464.1; Note=microRNA ath-miR864-5p; computational_description=mature miRNA accession:MIMAT0004311
ath-miR864-3p	chr1:006740569	0.0	W/6740569-6740590	ath-miR864-3p miRNA ath-miR864-3p ID=ath-miR864-3p; Alias=MIMAT0004312; Name=ath-miR864-3p; Derives_from=AT1G19464.1; Note=microRNA ath-miR864-3p; computational_description=mature miRNA accession:MIMAT0004312
AT1G19470.1	chr1:006741296	0.0	W/6741296-6742534	AT1G19470.1 CDS AT1G19470 ID=AT1G19470.1; Parent=AT1G19470; Name=AT1G19470.1; Note=Galactose oxidase/kelch repeat superfamily protein; conf_class=4; computational_description=Galactose oxidase/kelch repeat superfamily protein%3B CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch%2C beta-propeller (InterPro:IPR011043)%2C Kelch repeat type 1 (InterPro:IPR006652)%2C Kelch related (InterPro:IPR013089)%2C Kelch-type beta propeller (InterPro:IPR015915)%3B BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G19460.1)%3B Has 1608 Blast hits to 1548 proteins in 136 species: Archae - 0%3B Bacteria - 86%3B Metazoa - 423%3B Fungi - 8%3B Plants - 1021%3B Viruses - 35%3B Other Eukaryotes - 35 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:18775970, locus:2016447; locus_type=protein_coding
AT1TE21805	chr1:006742979	0.0	W/6742979-6744224	AT1TE21805 transposable_element AT1TE21805 ID=AT1TE21805; Name=AT1TE21805; Alias=SIMPLEHAT1
AT1G19480.1	chr1:006744520	0.0	W/6744520-6745649,6746126-6746144	AT1G19480.1 CDS AT1G19480 ID=AT1G19480.1; Parent=AT1G19480; Name=AT1G19480.1; Note=DNA glycosylase superfamily protein; conf_class=2; computational_description=DNA glycosylase superfamily protein%3B FUNCTIONS IN: catalytic activity%3B INVOLVED IN: DNA repair%2C base-excision repair%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257)%2C HhH-GPD domain (InterPro:IPR003265)%3B BEST Arabidopsis thaliana protein match is: DNA glycosylase superfamily protein (TAIR:AT1G75230.1)%3B Has 4603 Blast hits to 4603 proteins in 1096 species: Archae - 62%3B Bacteria - 2357%3B Metazoa - 1%3B Fungi - 142%3B Plants - 80%3B Viruses - 0%3B Other Eukaryotes - 1961 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:20736450, locus:2016457; locus_type=protein_coding
AT1G19480.2	chr1:006744520	0.0	W/6744520-6745653	AT1G19480.2 CDS AT1G19480 ID=AT1G19480.2; Parent=AT1G19480; Name=AT1G19480.2; Note=DNA glycosylase superfamily protein; conf_class=1; computational_description=DNA glycosylase superfamily protein%3B FUNCTIONS IN: catalytic activity%3B INVOLVED IN: DNA repair%2C base-excision repair%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257)%2C HhH-GPD domain (InterPro:IPR003265)%3B BEST Arabidopsis thaliana protein match is: DNA glycosylase superfamily protein (TAIR:AT1G75230.1)%3B Has 4603 Blast hits to 4603 proteins in 1096 species: Archae - 62%3B Bacteria - 2357%3B Metazoa - 1%3B Fungi - 142%3B Plants - 80%3B Viruses - 0%3B Other Eukaryotes - 1961 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14576160, PMID:20736450, locus:2016457; locus_type=protein_coding
AT1G19485.1	chr1:006747167	0.0	W/6747167-6747321,6747481-6747607,6747722-6747765,6748070-6748163,6748248-6749002,6749161-6749292,6749458-6749530,6749674-6749713,6749826-6749898,6749984-6750049,6750192-6750269,6750363-6750535,6750623-6750669,6750759-6750990,6751085-6751443	AT1G19485.1 CDS AT1G19485 ID=AT1G19485.1; Parent=AT1G19485; Name=AT1G19485.1; Note=Transducin/WD40 repeat-like superfamily protein; conf_class=3; computational_description=Transducin/WD40 repeat-like superfamily protein%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B LOCATED IN: CUL4 RING ubiquitin ligase complex%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: AT hook%2C DNA-binding motif (InterPro:IPR017956)%2C A.T hook-like (InterPro:IPR020478)%2C WD40 repeat (InterPro:IPR001680)%2C HMG-I/HMG-Y%2C DNA-binding%2C conserved site (InterPro:IPR000637)%2C WD40 repeat-like-containing domain (InterPro:IPR011046)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C WD40 repeat%2C subgroup (InterPro:IPR019781)%3B Has 323 Blast hits to 302 proteins in 88 species: Archae - 0%3B Bacteria - 11%3B Metazoa - 131%3B Fungi - 67%3B Plants - 67%3B Viruses - 0%3B Other Eukaryotes - 47 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15937229, PMID:18552200, locus:505006132; locus_type=protein_coding
AT1G19485.2	chr1:006747167	0.0	W/6747167-6747321,6747481-6747607,6747722-6747765,6748070-6748163,6748248-6749002,6749161-6749292,6749458-6749530,6749674-6749713,6749826-6749898,6749984-6750049,6750192-6750269,6750363-6750535,6750623-6750669,6750759-6750990,6751085-6751443	AT1G19485.2 CDS AT1G19485 ID=AT1G19485.2; Parent=AT1G19485; Name=AT1G19485.2; Note=Transducin/WD40 repeat-like superfamily protein; conf_class=3; computational_description=Transducin/WD40 repeat-like superfamily protein%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B LOCATED IN: CUL4 RING ubiquitin ligase complex%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: AT hook%2C DNA-binding motif (InterPro:IPR017956)%2C A.T hook-like (InterPro:IPR020478)%2C WD40 repeat (InterPro:IPR001680)%2C HMG-I/HMG-Y%2C DNA-binding%2C conserved site (InterPro:IPR000637)%2C WD40 repeat-like-containing domain (InterPro:IPR011046)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C WD40 repeat%2C subgroup (InterPro:IPR019781)%3B Has 323 Blast hits to 302 proteins in 88 species: Archae - 0%3B Bacteria - 11%3B Metazoa - 131%3B Fungi - 67%3B Plants - 67%3B Viruses - 0%3B Other Eukaryotes - 47 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15937229, PMID:18552200, locus:505006132; locus_type=protein_coding
AT1G19490.1	chr1:006751953	0.0	C/6751953-6752696,6752782-6752847,6752931-6752996,6753103-6753180,6753271-6753450,6753678-6753959	AT1G19490.1 CDS AT1G19490 ID=AT1G19490.1; Parent=AT1G19490; Name=AT1G19490.1; Note=Basic-leucine zipper (bZIP) transcription factor family protein; conf_class=1; computational_description=Basic-leucine zipper (bZIP) transcription factor family protein%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B LOCATED IN: chloroplast%3B CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827)%2C bZIP transcription factor%2C bZIP-1 (InterPro:IPR011616)%3B BEST Arabidopsis thaliana protein match is: basic region/leucine zipper transcription factor 16 (TAIR:AT2G35530.1)%3B Has 967 Blast hits to 951 proteins in 159 species: Archae - 2%3B Bacteria - 7%3B Metazoa - 181%3B Fungi - 81%3B Plants - 591%3B Viruses - 1%3B Other Eukaryotes - 104 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11118137, PMID:11906833, PMID:14576160, PMID:15226410, PMID:16731568, PMID:24377444, locus:2016422; locus_type=protein_coding
AT1TE21830	chr1:006753991	0.0	C/6753991-6754119	AT1TE21830 transposable_element AT1TE21830 ID=AT1TE21830; Name=AT1TE21830; Alias=ATDNAI27T9A
AT1G19500.1	chr1:006754952	0.0	C/6754952-6754973,6755316-6755536	AT1G19500.1 CDS AT1G19500 ID=AT1G19500.1; Parent=AT1G19500; Name=AT1G19500.1; Note=hypothetical protein; conf_class=3; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 9 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%2C C globular stage%2C petal differentiation and expansion stage%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35765.1)%3B Has 9 Blast hits to 9 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 9%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, locus:2016467; locus_type=protein_coding
AT1G19510.1	chr1:006756483	0.0	C/6756483-6756510,6757016-6757290	AT1G19510.1 CDS AT1G19510 ID=AT1G19510.1; Parent=AT1G19510; Name=AT1G19510.1; Note=RAD-like 5; conf_class=4; symbol=RL5; Alias=ATRL5, RAD-like 5, RSM4, RADIALIS-LIKE SANT/MYB 4; full_name=RAD-like 5; computational_description=RAD-like 5 (RL5)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B EXPRESSED IN: 11 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Molecular chaperone%2C heat shock protein%2C Hsp40%2C DnaJ (InterPro:IPR015609)%2C Homeodomain-like (InterPro:IPR009057)%2C MYB-like (InterPro:IPR017877)%3B BEST Arabidopsis thaliana protein match is: RAD-like 6 (TAIR:AT1G75250.2)%3B Has 606 Blast hits to 606 proteins in 82 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 147%3B Fungi - 0%3B Plants - 454%3B Viruses - 0%3B Other Eukaryotes - 5 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:16463103, PMID:17672842, PMID:18838801, locus:2016417; locus_type=protein_coding
AT1TE21840	chr1:006758935	0.0	W/6758935-6759700	AT1TE21840 transposable_element AT1TE21840 ID=AT1TE21840; Name=AT1TE21840; Alias=ATHPOGON1
AT1TE21845	chr1:006759701	0.0	W/6759701-6759761	AT1TE21845 transposable_element AT1TE21845 ID=AT1TE21845; Name=AT1TE21845; Alias=ATHPOGON1
AT1TE21850	chr1:006759762	0.0	W/6759762-6759900	AT1TE21850 transposable_element AT1TE21850 ID=AT1TE21850; Name=AT1TE21850; Alias=ATREP11
AT1G19520.1	chr1:006760032	0.0	W/6760032-6761138,6761511-6762581	AT1G19520.1 CDS AT1G19520 ID=AT1G19520.1; Parent=AT1G19520; Name=AT1G19520.1; Note=pentatricopeptide (PPR) repeat-containing protein; conf_class=2; symbol=NFD5; full_name=NUCLEAR FUSION DEFECTIVE 5; computational_description=NUCLEAR FUSION DEFECTIVE 5 (NFD5)%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G01970.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16698901, locus:2016402; locus_type=protein_coding
AT1G19520.2	chr1:006760032	0.0	W/6760032-6761150	AT1G19520.2 CDS AT1G19520 ID=AT1G19520.2; Parent=AT1G19520; Name=AT1G19520.2; Note=pentatricopeptide (PPR) repeat-containing protein; conf_class=1; symbol=NFD5; full_name=NUCLEAR FUSION DEFECTIVE 5; computational_description=NUCLEAR FUSION DEFECTIVE 5 (NFD5)%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G01970.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16698901, locus:2016402; locus_type=protein_coding
AT1G19530.1	chr1:006763976	0.0	W/6763976-6764027,6764145-6764254,6764410-6764486,6764572-6764686	AT1G19530.1 CDS AT1G19530 ID=AT1G19530.1; Parent=AT1G19530; Name=AT1G19530.1; Note=DNA polymerase epsilon catalytic subunit A; conf_class=2; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: N-terminal protein myristoylation%2C anaerobic respiration%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: leaf apex%2C inflorescence meristem%2C hypocotyl%2C root%2C flower%3B EXPRESSED DURING: petal differentiation and expansion stage%3B Has 47 Blast hits to 47 proteins in 13 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 47%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12773641, PMID:12912986, PMID:15908439, PMID:16081496, PMID:16159328, PMID:16258012, PMID:17937930, PMID:20097791, locus:2016477; locus_type=protein_coding
AT1G19530.2	chr1:006763976	0.0	W/6763976-6764027,6764145-6764254,6764410-6764486,6764572-6764686	AT1G19530.2 CDS AT1G19530 ID=AT1G19530.2; Parent=AT1G19530; Name=AT1G19530.2; Note=DNA polymerase epsilon catalytic subunit A; Dbxref=PMID:12773641, PMID:12912986, PMID:15908439, PMID:16081496, PMID:16159328, PMID:16258012, PMID:17937930, PMID:20097791, locus:2016477; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: N-terminal protein myristoylation%2C anaerobic respiration%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: leaf apex%2C inflorescence meristem%2C hypocotyl%2C root%2C flower%3B EXPRESSED DURING: petal differentiation and expansion stage%3B Has 47 Blast hits to 47 proteins in 13 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 47%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; locus_type=protein_coding
AT1G19540.1	chr1:006765713	0.0	W/6765713-6765889,6766212-6766352,6766445-6766688,6766775-6766978,6767081-6767247	AT1G19540.1 CDS AT1G19540 ID=AT1G19540.1; Parent=AT1G19540; Name=AT1G19540.1; Note=NmrA-like negative transcriptional regulator family protein; conf_class=2; computational_description=NmrA-like negative transcriptional regulator family protein%3B FUNCTIONS IN: binding%2C catalytic activity%3B INVOLVED IN: metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 18 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040)%2C NmrA-like (InterPro:IPR008030)%3B BEST Arabidopsis thaliana protein match is: NmrA-like negative transcriptional regulator family protein (TAIR:AT1G75280.1)%3B Has 2081 Blast hits to 2077 proteins in 492 species: Archae - 4%3B Bacteria - 817%3B Metazoa - 4%3B Fungi - 543%3B Plants - 557%3B Viruses - 7%3B Other Eukaryotes - 149 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12788945, PMID:15860015, PMID:20736450, locus:2016482; locus_type=protein_coding
AT1G19540.2	chr1:006765713	0.0	W/6765713-6765889,6766212-6766352,6766445-6766688,6766775-6766998	AT1G19540.2 CDS AT1G19540 ID=AT1G19540.2; Parent=AT1G19540; Name=AT1G19540.2; Note=NmrA-like negative transcriptional regulator family protein; computational_description=NmrA-like negative transcriptional regulator family protein%3B FUNCTIONS IN: binding%2C catalytic activity%3B INVOLVED IN: metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 18 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040)%2C NmrA-like (InterPro:IPR008030)%3B BEST Arabidopsis thaliana protein match is: NmrA-like negative transcriptional regulator family protein (TAIR:AT1G75280.1)%3B Has 2081 Blast hits to 2077 proteins in 492 species: Archae - 4%3B Bacteria - 817%3B Metazoa - 4%3B Fungi - 543%3B Plants - 557%3B Viruses - 7%3B Other Eukaryotes - 149 (source: NCBI BLink).; Dbxref=PMID:12788945, PMID:15860015, PMID:20736450, locus:2016482; locus_type=protein_coding
AT1G19550.1	chr1:006767451	0.0	C/6767451-6767710,6767782-6767983	AT1G19550.1 CDS AT1G19550 ID=AT1G19550.1; Parent=AT1G19550; Name=AT1G19550.1; Note=Glutathione S-transferase family protein; conf_class=6; computational_description=Glutathione S-transferase family protein%3B FUNCTIONS IN: glutathione dehydrogenase (ascorbate) activity%3B EXPRESSED IN: leaf%3B CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335)%2C Glutathione S-transferase%2C C-terminal (InterPro:IPR004046)%2C Glutathione S-transferase%2C C-terminal-like (InterPro:IPR010987)%2C Glutathione S-transferase/chloride channel%2C C-terminal (InterPro:IPR017933)%2C Glutathione S-transferase%2C N-terminal (InterPro:IPR004045)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B BEST Arabidopsis thaliana protein match is: dehydroascorbate reductase (TAIR:AT1G19570.2)%3B Has 503 Blast hits to 503 proteins in 149 species: Archae - 0%3B Bacteria - 48%3B Metazoa - 190%3B Fungi - 2%3B Plants - 245%3B Viruses - 0%3B Other Eukaryotes - 18 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:12954611, PMID:16377752, PMID:16361320, PMID:17828791, PMID:18650403, locus:2016492; locus_type=protein_coding
AT1TE21880	chr1:006768376	0.0	C/6768376-6768717	AT1TE21880 transposable_element AT1TE21880 ID=AT1TE21880; Name=AT1TE21880; Alias=ATREP5
AT1G19560.1	chr1:006768814	0.0	C/6768814-6770752	AT1G19560.1 pseudogenic_transcript AT1G19560 ID=AT1G19560.1; Parent=AT1G19560; Name=AT1G19560.1; index=1; Note=pseudogene; computational_description=pseudogene%2C putative CHP-rich zinc finger protein; Dbxref=locus:2824843, locus:2824843; locus_type=pseudogene
AT1G19565.1	chr1:006772084	0.0	C/6772084-6772380,6772444-6772646,6772879-6772970,6773079-6773131	AT1G19565.1 CDS AT1G19565 ID=AT1G19565.1; Parent=AT1G19565; Name=AT1G19565.1; Note=hypothetical protein; Dbxref=UniProt:P0C8P5; locus_type=protein_coding
AT1G19570.1	chr1:006773462	0.0	C/6773462-6773954,6774141-6774231,6774356-6774413	AT1G19570.1 CDS AT1G19570 ID=AT1G19570.1; Parent=AT1G19570; Name=AT1G19570.1; Note=dehydroascorbate reductase; curator_summary=Encodes a member of the dehydroascorbate reductase gene family. Critical for a mutualistic symbiosis between the host Arabidopsis and the root colonizing fungus Piriformospora indica.; conf_class=2; symbol=DHAR1; Alias=ATDHAR1, DHAR5, DEHYDROASCORBATE REDUCTASE 5; full_name=dehydroascorbate reductase; computational_description=dehydroascorbate reductase (DHAR1)%3B FUNCTIONS IN: copper ion binding%2C glutathione dehydrogenase (ascorbate) activity%3B INVOLVED IN: in 6 processes%3B LOCATED IN: in 7 components%3B EXPRESSED IN: 7 plant structures%3B EXPRESSED DURING: seedling growth%3B CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335)%2C Glutathione S-transferase%2C C-terminal (InterPro:IPR004046)%2C Glutathione S-transferase%2C C-terminal-like (InterPro:IPR010987)%2C Glutathione S-transferase/chloride channel%2C C-terminal (InterPro:IPR017933)%2C Glutathione S-transferase%2C N-terminal (InterPro:IPR004045)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B BEST Arabidopsis thaliana protein match is: dehydroascorbate reductase 2 (TAIR:AT1G75270.1)%3B Has 5234 Blast hits to 5161 proteins in 1116 species: Archae - 0%3B Bacteria - 2090%3B Metazoa - 1076%3B Fungi - 186%3B Plants - 896%3B Viruses - 0%3B Other Eukaryotes - 986 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18650403, PMID:18849295, PMID:19329564, PMID:19386380, PMID:19526718, PMID:19903221, PMID:19880396, PMID:19960204, PMID:20377702, PMID:20442276, PMID:20619891, PMID:20735773, PMID:21735195, PMID:22115780, PMID:22131159, PMID:22303257, PMID:21852753, PMID:22393048, PMID:23940555, PMID:25253886, PMID:25325904, locus:2013119; locus_type=protein_coding
AT1G19580.1	chr1:006774937	0.0	W/6774937-6775051,6775306-6775449,6776015-6776140,6776243-6776394,6776802-6777092	AT1G19580.1 CDS AT1G19580 ID=AT1G19580.1; Parent=AT1G19580; Name=AT1G19580.1; Note=gamma carbonic anhydrase 1; curator_summary=Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex.; conf_class=2; symbol=GAMMA CA1; full_name=gamma carbonic anhydrase 1; computational_description=gamma carbonic anhydrase 1 (GAMMA CA1)%3B FUNCTIONS IN: carbonate dehydratase activity%3B INVOLVED IN: photorespiration%3B LOCATED IN: mitochondrion%2C mitochondrial membrane%2C mitochondrial respiratory chain complex I%2C respiratory chain complex I%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004)%3B BEST Arabidopsis thaliana protein match is: gamma carbonic anhydrase 2 (TAIR:AT1G47260.1)%3B Has 10894 Blast hits to 10839 proteins in 2210 species: Archae - 265%3B Bacteria - 7962%3B Metazoa - 13%3B Fungi - 83%3B Plants - 197%3B Viruses - 0%3B Other Eukaryotes - 2374 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15821992, PMID:15935378, PMID:16407270, PMID:18189341, PMID:18434607, PMID:20118269, PMID:20197505, PMID:21167537, locus:2013104; locus_type=protein_coding
AT1G19580.2	chr1:006774937	0.0	W/6774937-6775051,6775306-6775449,6776015-6776140,6776243-6776394,6776564-6776645,6776802-6776845	AT1G19580.2 CDS AT1G19580 ID=AT1G19580.2; Parent=AT1G19580; Name=AT1G19580.2; Note=gamma carbonic anhydrase 1; curator_summary=Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex.; conf_class=6; symbol=GAMMA CA1; full_name=gamma carbonic anhydrase 1; computational_description=gamma carbonic anhydrase 1 (GAMMA CA1)%3B FUNCTIONS IN: carbonate dehydratase activity%3B INVOLVED IN: photorespiration%3B LOCATED IN: mitochondrion%2C mitochondrial membrane%2C mitochondrial respiratory chain complex I%2C respiratory chain complex I%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004)%3B BEST Arabidopsis thaliana protein match is: gamma carbonic anhydrase 2 (TAIR:AT1G47260.1)%3B Has 10894 Blast hits to 10839 proteins in 2210 species: Archae - 265%3B Bacteria - 7962%3B Metazoa - 13%3B Fungi - 83%3B Plants - 197%3B Viruses - 0%3B Other Eukaryotes - 2374 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:15821992, PMID:15935378, PMID:16407270, PMID:18189341, PMID:18434607, PMID:20118269, PMID:20197505, PMID:21167537, locus:2013104; locus_type=protein_coding
AT1TE21910	chr1:006778570	0.0	C/6778570-6778858	AT1TE21910 transposable_element AT1TE21910 ID=AT1TE21910; Name=AT1TE21910; Alias=HELITRONY3
AT1G19600.1	chr1:006779085	0.0	W/6779085-6779225,6779382-6779630,6779709-6779780,6779869-6779907,6780014-6780121,6780217-6780314,6780419-6780530,6780650-6780898	AT1G19600.1 CDS AT1G19600 ID=AT1G19600.1; Parent=AT1G19600; Name=AT1G19600.1; Note=pfkB-like carbohydrate kinase family protein; conf_class=3; computational_description=pfkB-like carbohydrate kinase family protein%3B FUNCTIONS IN: kinase activity%3B INVOLVED IN: D-ribose catabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611)%3B BEST Arabidopsis thaliana protein match is: pfkB-like carbohydrate kinase family protein (TAIR:AT4G27600.1)%3B Has 11746 Blast hits to 11745 proteins in 2087 species: Archae - 257%3B Bacteria - 7533%3B Metazoa - 331%3B Fungi - 90%3B Plants - 444%3B Viruses - 0%3B Other Eukaryotes - 3091 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16367961, PMID:20736450, locus:2013094; locus_type=protein_coding
AT1G19610.1	chr1:006781674	0.0	C/6781674-6781846,6781961-6782024	AT1G19610.1 CDS AT1G19610 ID=AT1G19610.1; Parent=AT1G19610; Name=AT1G19610.1; Note=defensin-like protein; curator_summary=Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1%2C At5g44420/PDF1.2a%2C At2g26020/PDF1.2b%2C At5g44430/PDF1.2c%2C At2g26010/PDF1.3%2C At1g19610/PDF1.4%2C At1g55010/PDF1.5%2C At2g02120/PDF2.1%2C At2g02100/PDF2.2%2C At2g02130/PDF2.3%2C At1g61070/PDF2.4%2C At5g63660/PDF2.5%2C At2g02140/PDF2.6%2C At5g38330/PDF3.1 and At4g30070/PDF3.2.; conf_class=1; symbol=PDF1.4; computational_description=PDF1.4%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: defense response%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 13 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: Gamma thionin (InterPro:IPR008176)%2C Low-molecular-weight cysteine-rich family (InterPro:IPR020191)%2C Knottin (InterPro:IPR003614)%3B BEST Arabidopsis thaliana protein match is: plant defensin 1.3 (TAIR:AT2G26010.1)%3B Has 153 Blast hits to 153 proteins in 41 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 152%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11437247, PMID:15489280, PMID:15772289, PMID:15990873, PMID:16172500, PMID:16307302, PMID:16632591, PMID:16911220, PMID:17194769, PMID:17149585, PMID:18184068, PMID:18650403, PMID:18674922, PMID:23865749, locus:2013184; locus_type=protein_coding
AT1G19620.1	chr1:006784020	0.0	W/6784020-6784153,6784256-6785075	AT1G19620.1 CDS AT1G19620 ID=AT1G19620.1; Parent=AT1G19620; Name=AT1G19620.1; Note=transmembrane protein; conf_class=8; computational_description=unknown protein%3B Has 44 Blast hits to 24 proteins in 12 species: Archae - 0%3B Bacteria - 8%3B Metazoa - 22%3B Fungi - 0%3B Plants - 6%3B Viruses - 0%3B Other Eukaryotes - 8 (source: NCBI BLink).; conf_rating=*; Dbxref=locus:2013174; locus_type=protein_coding
AT1G19630.1	chr1:006785427	0.0	C/6785427-6785523,6785610-6785728,6785825-6785931,6786044-6786122,6786205-6786291,6786463-6786542,6786715-6786892,6787001-6787150,6787360-6787681,6787756-6787967	AT1G19630.1 CDS AT1G19630 ID=AT1G19630.1; Parent=AT1G19630; Name=AT1G19630.1; Note=cytochrome P450%2C family 722%2C subfamily A%2C polypeptide 1; curator_summary=member of CYP722A; conf_class=2; symbol=CYP722A1; full_name=cytochrome P450%2C family 722%2C subfamily A%2C polypeptide 1; computational_description=cytochrome P450%2C family 722%2C subfamily A%2C polypeptide 1 (CYP722A1)%3B FUNCTIONS IN: electron carrier activity%2C monooxygenase activity%2C iron ion binding%2C oxygen binding%2C heme binding%3B INVOLVED IN: oxidation reduction%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: stem%2C flower%3B EXPRESSED DURING: petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128)%2C Cytochrome P450%2C conserved site (InterPro:IPR017972)%2C Cytochrome P450%2C E-class%2C group I (InterPro:IPR002401)%3B BEST Arabidopsis thaliana protein match is: cytochrome P450%2C family 707%2C subfamily A%2C polypeptide 1 (TAIR:AT4G19230.1)%3B Has 35375 Blast hits to 35292 proteins in 1804 species: Archae - 63%3B Bacteria - 6821%3B Metazoa - 11890%3B Fungi - 5888%3B Plants - 8751%3B Viruses - 3%3B Other Eukaryotes - 1959 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18315867, PMID:18433503, locus:2013159; locus_type=protein_coding
AT1G19630.3	chr1:006785588	0.0	C/6785588-6785728,6785825-6785931,6786044-6786122,6786205-6786291,6786463-6786542,6786715-6786892,6787001-6787150,6787360-6787681,6787756-6787967	AT1G19630.3 CDS AT1G19630 ID=AT1G19630.3; Parent=AT1G19630; Name=AT1G19630.3; Note=cytochrome P450%2C family 722%2C subfamily A%2C polypeptide 1; symbol=CYP722A1; full_name=cytochrome P450%2C family 722%2C subfamily A%2C polypeptide 1; curator_summary=member of CYP722A; computational_description=cytochrome P450%2C family 722%2C subfamily A%2C polypeptide 1 (CYP722A1)%3B FUNCTIONS IN: electron carrier activity%2C monooxygenase activity%2C iron ion binding%2C oxygen binding%2C heme binding%3B INVOLVED IN: oxidation reduction%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: stem%2C flower%3B EXPRESSED DURING: petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128)%2C Cytochrome P450%2C conserved site (InterPro:IPR017972)%2C Cytochrome P450%2C E-class%2C group I (InterPro:IPR002401)%3B BEST Arabidopsis thaliana protein match is: cytochrome P450%2C family 707%2C subfamily A%2C polypeptide 1 (TAIR:AT4G19230.1)%3B Has 35375 Blast hits to 35292 proteins in 1804 species: Archae - 63%3B Bacteria - 6821%3B Metazoa - 11890%3B Fungi - 5888%3B Plants - 8751%3B Viruses - 3%3B Other Eukaryotes - 1959 (source: NCBI BLink).; Dbxref=PMID:18315867, PMID:18433503, locus:2013159; locus_type=protein_coding
AT1G19630.2	chr1:006785735	0.0	C/6785735-6785931,6786044-6786122,6786205-6786291,6786463-6786542,6786715-6786892,6787001-6787150,6787360-6787681,6787756-6787967	AT1G19630.2 CDS AT1G19630 ID=AT1G19630.2; Parent=AT1G19630; Name=AT1G19630.2; Note=cytochrome P450%2C family 722%2C subfamily A%2C polypeptide 1; symbol=CYP722A1; full_name=cytochrome P450%2C family 722%2C subfamily A%2C polypeptide 1; curator_summary=member of CYP722A; computational_description=cytochrome P450%2C family 722%2C subfamily A%2C polypeptide 1 (CYP722A1)%3B FUNCTIONS IN: electron carrier activity%2C monooxygenase activity%2C iron ion binding%2C oxygen binding%2C heme binding%3B INVOLVED IN: oxidation reduction%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: stem%2C flower%3B EXPRESSED DURING: petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128)%2C Cytochrome P450%2C conserved site (InterPro:IPR017972)%2C Cytochrome P450%2C E-class%2C group I (InterPro:IPR002401)%3B BEST Arabidopsis thaliana protein match is: cytochrome P450%2C family 707%2C subfamily A%2C polypeptide 1 (TAIR:AT4G19230.1)%3B Has 35375 Blast hits to 35292 proteins in 1804 species: Archae - 63%3B Bacteria - 6821%3B Metazoa - 11890%3B Fungi - 5888%3B Plants - 8751%3B Viruses - 3%3B Other Eukaryotes - 1959 (source: NCBI BLink).; Dbxref=PMID:18315867, PMID:18433503, locus:2013159; locus_type=protein_coding
AT1G19640.1	chr1:006789166	0.0	C/6789166-6789546,6790285-6790572,6791068-6791493,6791634-6791708	AT1G19640.1 CDS AT1G19640 ID=AT1G19640.1; Parent=AT1G19640; Name=AT1G19640.1; Note=jasmonic acid carboxyl methyltransferase; curator_summary=Encodes a S-adenosyl-L-methionine:jasmonic acid carboxyl methyltransferase that catalyzes the formation of methyljasmonate from jasmonic acid. Its expression is induced in response to wounding or methyljasmonate treatment.; conf_class=2; symbol=JMT; full_name=jasmonic acid carboxyl methyltransferase; computational_description=jasmonic acid carboxyl methyltransferase (JMT)%3B CONTAINS InterPro DOMAIN/s: SAM dependent carboxyl methyltransferase (InterPro:IPR005299)%3B BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT3G11480.1)%3B Has 890 Blast hits to 871 proteins in 121 species: Archae - 0%3B Bacteria - 61%3B Metazoa - 9%3B Fungi - 5%3B Plants - 740%3B Viruses - 0%3B Other Eukaryotes - 75 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11287667, PMID:12897246, PMID:14617060, PMID:15287975, PMID:15565108, PMID:16172500, PMID:16553894, PMID:16553893, PMID:17189325, PMID:17176401, PMID:17475618, PMID:17905899, PMID:18214527, PMID:18192438, PMID:18326828, PMID:18775970, PMID:19211695, PMID:23393583, PMID:23505340, locus:2013149; locus_type=protein_coding
AT1TE21950	chr1:006789613	0.0	C/6789613-6790113	AT1TE21950 transposable_element AT1TE21950 ID=AT1TE21950; Name=AT1TE21950; Alias=HELITRONY1D
AT1G19650.1	chr1:006796431	0.0	C/6796431-6796451,6796529-6796603,6796700-6797091,6797197-6797311,6797410-6797523,6797617-6797709,6797824-6797923,6798014-6798063,6798144-6798245,6798327-6798404,6798499-6798765,6798854-6798953,6799099-6799384,6799504-6799537	AT1G19650.1 CDS AT1G19650 ID=AT1G19650.1; Parent=AT1G19650; Name=AT1G19650.1; Note=Sec14p-like phosphatidylinositol transfer family protein; conf_class=2; computational_description=Sec14p-like phosphatidylinositol transfer family protein%3B FUNCTIONS IN: phosphatidylinositol transporter activity%2C transporter activity%3B INVOLVED IN: transport%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function%2C C-terminal (InterPro:IPR001251)%2C Cellular retinaldehyde-binding/triple function%2C N-terminal (InterPro:IPR008273)%2C Cellular retinaldehyde binding/alpha-tocopherol transport (InterPro:IPR001071)%2C Phosphatidylinositol transfer protein-like%2C N-terminal (InterPro:IPR011074)%3B BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT1G75370.1)%3B Has 2627 Blast hits to 2615 proteins in 230 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 801%3B Fungi - 541%3B Plants - 877%3B Viruses - 0%3B Other Eukaryotes - 408 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, locus:2013134; locus_type=protein_coding
AT1G19650.2	chr1:006796431	0.0	C/6796431-6796451,6796529-6796603,6796700-6797091,6797197-6797311,6797410-6797523,6797617-6797709,6797824-6797923,6798014-6798063,6798144-6798245,6798327-6798404,6798499-6798765,6798854-6799057	AT1G19650.2 CDS AT1G19650 ID=AT1G19650.2; Parent=AT1G19650; Name=AT1G19650.2; Note=Sec14p-like phosphatidylinositol transfer family protein; conf_class=2; computational_description=Sec14p-like phosphatidylinositol transfer family protein%3B FUNCTIONS IN: phosphatidylinositol transporter activity%2C transporter activity%3B INVOLVED IN: transport%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function%2C C-terminal (InterPro:IPR001251)%2C Cellular retinaldehyde-binding/triple function%2C N-terminal (InterPro:IPR008273)%2C Cellular retinaldehyde binding/alpha-tocopherol transport (InterPro:IPR001071)%2C Phosphatidylinositol transfer protein-like%2C N-terminal (InterPro:IPR011074)%3B BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT1G75370.1)%3B Has 2627 Blast hits to 2615 proteins in 230 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 801%3B Fungi - 541%3B Plants - 877%3B Viruses - 0%3B Other Eukaryotes - 408 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, locus:2013134; locus_type=protein_coding
AT1G19650.3	chr1:006797059	0.0	C/6797059-6797091,6797197-6797268,6797410-6797523,6797617-6797709,6797824-6797923,6798014-6798063,6798144-6798245,6798327-6798404,6798499-6798765,6798854-6798953,6799099-6799384,6799504-6799537	AT1G19650.3 CDS AT1G19650 ID=AT1G19650.3; Parent=AT1G19650; Name=AT1G19650.3; Note=Sec14p-like phosphatidylinositol transfer family protein; computational_description=Sec14p-like phosphatidylinositol transfer family protein%3B FUNCTIONS IN: phosphatidylinositol transporter activity%2C transporter activity%3B INVOLVED IN: transport%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function%2C C-terminal (InterPro:IPR001251)%2C Cellular retinaldehyde-binding/triple function%2C N-terminal (InterPro:IPR008273)%2C Cellular retinaldehyde binding/alpha-tocopherol transport (InterPro:IPR001071)%2C Phosphatidylinositol transfer protein-like%2C N-terminal (InterPro:IPR011074)%3B BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT1G75370.1)%3B Has 2627 Blast hits to 2615 proteins in 230 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 801%3B Fungi - 541%3B Plants - 877%3B Viruses - 0%3B Other Eukaryotes - 408 (source: NCBI BLink).; Dbxref=PMID:18775970, locus:2013134; locus_type=protein_coding
AT1G19660.1	chr1:006800361	0.0	C/6800361-6800422,6800552-6800643,6800733-6800851,6800989-6801063,6801201-6801266,6801369-6801425,6801523-6801572,6801672-6801842,6801943-6802240	AT1G19660.1 CDS AT1G19660 ID=AT1G19660.1; Parent=AT1G19660; Name=AT1G19660.1; Note=Wound-responsive family protein; conf_class=2; Alias=AtBBD2, BBD2, bifunctional nuclease in basal defense response 2; computational_description=Wound-responsive family protein%3B FUNCTIONS IN: DNA binding%2C nuclease activity%3B INVOLVED IN: response to wounding%2C nucleotide-excision repair%3B EXPRESSED IN: ovule%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF151 (InterPro:IPR003729)%2C UvrB/UvrC protein (InterPro:IPR001943)%3B BEST Arabidopsis thaliana protein match is: bifunctional nuclease in basal defense response 1 (TAIR:AT1G75380.3)%3B Has 886 Blast hits to 886 proteins in 308 species: Archae - 44%3B Bacteria - 551%3B Metazoa - 0%3B Fungi - 0%3B Plants - 105%3B Viruses - 0%3B Other Eukaryotes - 186 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:18650403, PMID:19291320, PMID:23393583, locus:2013164; locus_type=protein_coding
AT1G19660.2	chr1:006800361	0.0	C/6800361-6800422,6800552-6800643,6800733-6800851,6800989-6801063,6801201-6801266,6801369-6801425,6801523-6801572,6801672-6801842,6801943-6802240	AT1G19660.2 CDS AT1G19660 ID=AT1G19660.2; Parent=AT1G19660; Name=AT1G19660.2; Note=Wound-responsive family protein; conf_class=2; Alias=AtBBD2, BBD2, bifunctional nuclease in basal defense response 2; computational_description=Wound-responsive family protein%3B FUNCTIONS IN: DNA binding%2C nuclease activity%3B INVOLVED IN: response to wounding%2C nucleotide-excision repair%3B EXPRESSED IN: ovule%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF151 (InterPro:IPR003729)%2C UvrB/UvrC protein (InterPro:IPR001943)%3B BEST Arabidopsis thaliana protein match is: bifunctional nuclease in basal defense response 1 (TAIR:AT1G75380.3)%3B Has 886 Blast hits to 886 proteins in 308 species: Archae - 44%3B Bacteria - 551%3B Metazoa - 0%3B Fungi - 0%3B Plants - 105%3B Viruses - 0%3B Other Eukaryotes - 186 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:18650403, PMID:19291320, PMID:23393583, locus:2013164; locus_type=protein_coding
AT1G19660.3	chr1:006800490	0.0	C/6800490-6800643,6800733-6800851,6800989-6801063,6801201-6801266,6801369-6801425,6801523-6801572,6801672-6801842,6801943-6802240	AT1G19660.3 CDS AT1G19660 ID=AT1G19660.3; Parent=AT1G19660; Name=AT1G19660.3; Note=Wound-responsive family protein; Alias=AtBBD2, BBD2, bifunctional nuclease in basal defense response 2; computational_description=Wound-responsive family protein%3B FUNCTIONS IN: DNA binding%2C nuclease activity%3B INVOLVED IN: response to wounding%2C nucleotide-excision repair%3B EXPRESSED IN: ovule%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF151 (InterPro:IPR003729)%2C UvrB/UvrC protein (InterPro:IPR001943)%3B BEST Arabidopsis thaliana protein match is: bifunctional nuclease in basal defense response 1 (TAIR:AT1G75380.3)%3B Has 886 Blast hits to 886 proteins in 308 species: Archae - 44%3B Bacteria - 551%3B Metazoa - 0%3B Fungi - 0%3B Plants - 105%3B Viruses - 0%3B Other Eukaryotes - 186 (source: NCBI BLink).; Dbxref=PMID:14576160, PMID:18650403, PMID:19291320, PMID:23393583, locus:2013164; locus_type=protein_coding
AT1G19670.1	chr1:006803796	0.0	C/6803796-6804500,6804654-6804923	AT1G19670.1 CDS AT1G19670 ID=AT1G19670.1; Parent=AT1G19670; Name=AT1G19670.1; Note=chlorophyllase 1; curator_summary=Chlorophyllase is the first enzyme involved in chlorophyll degradation. It catalyzes the hydrolysis of the ester bond to yield chlorophyllide and phytol. AtCLH1 lacks a typical signal sequence for the chloroplast. Its expression is induced rapidly by methyljasmonate%2C a known promoter of senescence and chlorophyll degradation.; conf_class=2; symbol=CLH1; Alias=ATCLH1, chlorophyllase 1, ATHCOR1, CORONATINE-INDUCED PROTEIN 1, CORI1, CORONATINE-INDUCED PROTEIN 1; full_name=chlorophyllase 1; computational_description=chlorophyllase 1 (CLH1)%3B FUNCTIONS IN: chlorophyllase activity%3B INVOLVED IN: response to jasmonic acid stimulus%2C chlorophyll catabolic process%2C jasmonic acid mediated signaling pathway%2C response to stress%3B LOCATED IN: vacuole%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Chlorophyllase-like (InterPro:IPR010821)%2C Chlorophyllase%2C chloroplast (InterPro:IPR017395)%3B BEST Arabidopsis thaliana protein match is: chlorophyllase 2 (TAIR:AT5G43860.1)%3B Has 196 Blast hits to 192 proteins in 66 species: Archae - 2%3B Bacteria - 62%3B Metazoa - 6%3B Fungi - 0%3B Plants - 116%3B Viruses - 0%3B Other Eukaryotes - 10 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10611389, PMID:9501136, PMID:11950974, PMID:12805590, PMID:12777052, PMID:15194820, PMID:15598807, PMID:15713015, PMID:15994234, PMID:16021335, PMID:16258012, PMID:16262714, PMID:16299171, PMID:16553894, PMID:16698904, PMID:17194769, PMID:17513504, PMID:17545220, PMID:17996203, PMID:18192438, PMID:18184068, PMID:18349515, PMID:18650403, PMID:20507480, PMID:21896889, PMID:25059706, PMID:25041167, locus:2013129; locus_type=protein_coding
AT1G19680.1	chr1:006805909	0.0	W/6805909-6806239,6806506-6806537,6806619-6807569,6807662-6807682	AT1G19680.1 CDS AT1G19680 ID=AT1G19680.1; Parent=AT1G19680; Name=AT1G19680.1; Note=RING/U-box superfamily protein; conf_class=2; computational_description=RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B INVOLVED IN: N-terminal protein myristoylation%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G75400.1)%3B Has 470 Blast hits to 325 proteins in 82 species: Archae - 0%3B Bacteria - 69%3B Metazoa - 71%3B Fungi - 25%3B Plants - 165%3B Viruses - 0%3B Other Eukaryotes - 140 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11983057, PMID:12912986, PMID:14576160, PMID:18775970, locus:2013114; locus_type=protein_coding
AT1G19690.1	chr1:006807925	0.0	C/6807925-6808192,6808278-6808415,6808498-6808632,6808702-6808741,6808832-6808910,6808999-6809077,6809158-6809250,6809336-6809562	AT1G19690.1 CDS AT1G19690 ID=AT1G19690.1; Parent=AT1G19690; Name=AT1G19690.1; Note=NAD(P)-binding Rossmann-fold superfamily protein; conf_class=2; computational_description=NAD(P)-binding Rossmann-fold superfamily protein%3B FUNCTIONS IN: coenzyme binding%2C binding%2C catalytic activity%3B INVOLVED IN: cellular metabolic process%2C metabolic process%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509)%2C NAD(P)-binding domain (InterPro:IPR016040)%3B Has 3422 Blast hits to 3422 proteins in 1044 species: Archae - 54%3B Bacteria - 2233%3B Metazoa - 3%3B Fungi - 5%3B Plants - 67%3B Viruses - 4%3B Other Eukaryotes - 1056 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2035461; locus_type=protein_coding
AT1G19700.1	chr1:006809958	0.0	C/6809958-6810383,6810471-6810531,6810637-6811022,6811111-6811854	AT1G19700.1 CDS AT1G19700 ID=AT1G19700.1; Parent=AT1G19700; Name=AT1G19700.1; Note=BEL1-like homeodomain 10; curator_summary=Encodes a member of the BEL family of homeodomain proteins. Its interaction with PLP (PAS/LOV PROTEIN) is diminished by blue light.; conf_class=2; symbol=BEL10; Alias=BLH10, BEL1-LIKE HOMEODOMAIN 10; full_name=BEL1-like homeodomain 10; computational_description=BEL1-like homeodomain 10 (BEL10)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%2C regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356)%2C Homeodomain-like (InterPro:IPR009057)%2C POX (InterPro:IPR006563)%2C Homeodomain-related (InterPro:IPR012287)%3B BEST Arabidopsis thaliana protein match is: BEL1-like homeodomain 3 (TAIR:AT1G75410.2)%3B Has 5190 Blast hits to 5190 proteins in 343 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 2115%3B Fungi - 347%3B Plants - 2475%3B Viruses - 0%3B Other Eukaryotes - 249 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:15781858, PMID:17982713, PMID:19457201, PMID:20736450, locus:2013154; locus_type=protein_coding
AT1G19700.2	chr1:006809958	0.0	C/6809958-6810383,6810471-6810531,6810637-6811022,6811111-6811854	AT1G19700.2 CDS AT1G19700 ID=AT1G19700.2; Parent=AT1G19700; Name=AT1G19700.2; Note=BEL1-like homeodomain 10; curator_summary=Encodes a member of the BEL family of homeodomain proteins. Its interaction with PLP (PAS/LOV PROTEIN) is diminished by blue light.; conf_class=2; symbol=BEL10; Alias=BLH10, BEL1-LIKE HOMEODOMAIN 10; full_name=BEL1-like homeodomain 10; computational_description=BEL1-like homeodomain 10 (BEL10)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%2C regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356)%2C Homeodomain-like (InterPro:IPR009057)%2C POX (InterPro:IPR006563)%2C Homeodomain-related (InterPro:IPR012287)%3B BEST Arabidopsis thaliana protein match is: BEL1-like homeodomain 3 (TAIR:AT1G75410.2)%3B Has 5190 Blast hits to 5190 proteins in 343 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 2115%3B Fungi - 347%3B Plants - 2475%3B Viruses - 0%3B Other Eukaryotes - 249 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:15781858, PMID:17982713, PMID:19457201, PMID:20736450, locus:2013154; locus_type=protein_coding
AT1G19700.3	chr1:006809958	0.0	C/6809958-6810383,6810471-6810531,6810637-6811022,6811111-6811854	AT1G19700.3 CDS AT1G19700 ID=AT1G19700.3; Parent=AT1G19700; Name=AT1G19700.3; Note=BEL1-like homeodomain 10; curator_summary=Encodes a member of the BEL family of homeodomain proteins. Its interaction with PLP (PAS/LOV PROTEIN) is diminished by blue light.; conf_class=3; symbol=BEL10; Alias=BLH10, BEL1-LIKE HOMEODOMAIN 10; full_name=BEL1-like homeodomain 10; computational_description=BEL1-like homeodomain 10 (BEL10)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%2C regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356)%2C Homeodomain-like (InterPro:IPR009057)%2C POX (InterPro:IPR006563)%2C Homeodomain-related (InterPro:IPR012287)%3B BEST Arabidopsis thaliana protein match is: BEL1-like homeodomain 3 (TAIR:AT1G75410.2)%3B Has 5190 Blast hits to 5190 proteins in 343 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 2115%3B Fungi - 347%3B Plants - 2475%3B Viruses - 0%3B Other Eukaryotes - 249 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:15781858, PMID:17982713, PMID:19457201, PMID:20736450, locus:2013154; locus_type=protein_coding
AT1G19700.4	chr1:006809958	0.0	C/6809958-6810383,6810471-6810531,6810637-6811022,6811111-6811854	AT1G19700.4 CDS AT1G19700 ID=AT1G19700.4; Parent=AT1G19700; Name=AT1G19700.4; Note=BEL1-like homeodomain 10; symbol=BEL10; Alias=BLH10, BEL1-LIKE HOMEODOMAIN 10; full_name=BEL1-like homeodomain 10; Dbxref=PMID:11118137, PMID:15781858, PMID:17982713, PMID:19457201, PMID:20736450, locus:2013154; curator_summary=Encodes a member of the BEL family of homeodomain proteins. Its interaction with PLP (PAS/LOV PROTEIN) is diminished by blue light.; computational_description=BEL1-like homeodomain 10 (BEL10)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%2C regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356)%2C Homeodomain-like (InterPro:IPR009057)%2C POX (InterPro:IPR006563)%2C Homeodomain-related (InterPro:IPR012287)%3B BEST Arabidopsis thaliana protein match is: BEL1-like homeodomain 3 (TAIR:AT1G75410.2)%3B Has 5190 Blast hits to 5190 proteins in 343 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 2115%3B Fungi - 347%3B Plants - 2475%3B Viruses - 0%3B Other Eukaryotes - 249 (source: NCBI BLink).; locus_type=protein_coding
AT1G19700.5	chr1:006809958	0.0	C/6809958-6810383,6810471-6810531,6810637-6811022,6811111-6811854	AT1G19700.5 CDS AT1G19700 ID=AT1G19700.5; Parent=AT1G19700; Name=AT1G19700.5; Note=BEL1-like homeodomain 10; symbol=BEL10; Alias=BLH10, BEL1-LIKE HOMEODOMAIN 10; full_name=BEL1-like homeodomain 10; Dbxref=PMID:11118137, PMID:15781858, PMID:17982713, PMID:19457201, PMID:20736450, locus:2013154; curator_summary=Encodes a member of the BEL family of homeodomain proteins. Its interaction with PLP (PAS/LOV PROTEIN) is diminished by blue light.; computational_description=BEL1-like homeodomain 10 (BEL10)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%2C regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356)%2C Homeodomain-like (InterPro:IPR009057)%2C POX (InterPro:IPR006563)%2C Homeodomain-related (InterPro:IPR012287)%3B BEST Arabidopsis thaliana protein match is: BEL1-like homeodomain 3 (TAIR:AT1G75410.2)%3B Has 5190 Blast hits to 5190 proteins in 343 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 2115%3B Fungi - 347%3B Plants - 2475%3B Viruses - 0%3B Other Eukaryotes - 249 (source: NCBI BLink).; locus_type=protein_coding
AT1G05507.1	chr1:006813647	0.0	W/6813647-6814005	AT1G05507.1 lnc_RNA AT1G05507 ID=AT1G05507.1; Parent=AT1G05507; Name=AT1G05507.1; locus_type=long_noncoding_rna
AT1G19710.1	chr1:006814920	0.0	W/6814920-6815187,6815257-6815399,6815484-6815755,6815848-6816002,6816115-6816716	AT1G19710.1 CDS AT1G19710 ID=AT1G19710.1; Parent=AT1G19710; Name=AT1G19710.1; Note=UDP-Glycosyltransferase superfamily protein; conf_class=2; computational_description=UDP-Glycosyltransferase superfamily protein%3B FUNCTIONS IN: transferase activity%2C transferring glycosyl groups%3B INVOLVED IN: biosynthetic process%3B LOCATED IN: Golgi apparatus%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Glycosyl transferase%2C group 1 (InterPro:IPR001296)%3B BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT1G75420.1)%3B Has 6148 Blast hits to 6144 proteins in 1382 species: Archae - 171%3B Bacteria - 4108%3B Metazoa - 97%3B Fungi - 39%3B Plants - 107%3B Viruses - 0%3B Other Eukaryotes - 1626 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16618929, locus:2013089; locus_type=protein_coding
AT1G19715.1	chr1:006816934	0.0	C/6816934-6817233,6817324-6817548,6817795-6818169,6818250-6818483,6818582-6819028,6819110-6819313,6819430-6819432	AT1G19715.1 CDS AT1G19715 ID=AT1G19715.1; Parent=AT1G19715; Name=AT1G19715.1; Note=Mannose-binding lectin superfamily protein; conf_class=2; computational_description=Mannose-binding lectin superfamily protein%3B CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229)%3B BEST Arabidopsis thaliana protein match is: Mannose-binding lectin superfamily protein (TAIR:AT1G73040.1)%3B Has 3242 Blast hits to 933 proteins in 57 species: Archae - 0%3B Bacteria - 14%3B Metazoa - 135%3B Fungi - 2%3B Plants - 3082%3B Viruses - 0%3B Other Eukaryotes - 9 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15200639, PMID:18650403, locus:1005716765; locus_type=protein_coding
AT1G19715.2	chr1:006816934	0.0	C/6816934-6817233,6817324-6817548,6817795-6818169,6818250-6818483,6818582-6819028,6819110-6819244	AT1G19715.2 CDS AT1G19715 ID=AT1G19715.2; Parent=AT1G19715; Name=AT1G19715.2; Note=Mannose-binding lectin superfamily protein; conf_class=2; computational_description=Mannose-binding lectin superfamily protein%3B CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229)%3B BEST Arabidopsis thaliana protein match is: Mannose-binding lectin superfamily protein (TAIR:AT1G73040.1)%3B Has 3242 Blast hits to 933 proteins in 57 species: Archae - 0%3B Bacteria - 14%3B Metazoa - 135%3B Fungi - 2%3B Plants - 3082%3B Viruses - 0%3B Other Eukaryotes - 9 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15200639, PMID:18650403, locus:1005716765; locus_type=protein_coding
AT1G19715.3	chr1:006816934	0.0	C/6816934-6817233,6817324-6817548,6817795-6818169,6818250-6818483,6818582-6819028,6819110-6819313,6819412-6819432	AT1G19715.3 CDS AT1G19715 ID=AT1G19715.3; Parent=AT1G19715; Name=AT1G19715.3; Note=Mannose-binding lectin superfamily protein; conf_class=2; computational_description=Mannose-binding lectin superfamily protein%3B CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229)%3B BEST Arabidopsis thaliana protein match is: Mannose-binding lectin superfamily protein (TAIR:AT1G73040.1)%3B Has 3242 Blast hits to 933 proteins in 57 species: Archae - 0%3B Bacteria - 14%3B Metazoa - 135%3B Fungi - 2%3B Plants - 3082%3B Viruses - 0%3B Other Eukaryotes - 9 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15200639, PMID:18650403, locus:1005716765; locus_type=protein_coding
AT1G19720.1	chr1:006819926	0.0	C/6819926-6822610	AT1G19720.1 CDS AT1G19720 ID=AT1G19720.1; Parent=AT1G19720; Name=AT1G19720.1; Note=Pentatricopeptide repeat (PPR-like) superfamily protein; conf_class=2; computational_description=Pentatricopeptide repeat (PPR-like) superfamily protein%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: nucleus%2C chloroplast%2C cytoplasm%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57430.1)%3B Has 61333 Blast hits to 15549 proteins in 316 species: Archae - 3%3B Bacteria - 46%3B Metazoa - 404%3B Fungi - 515%3B Plants - 59134%3B Viruses - 0%3B Other Eukaryotes - 1231 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15610358, locus:2013079; locus_type=protein_coding
AT1G19730.1	chr1:006823163	0.0	C/6823163-6823306,6823407-6823532,6823931-6824020	AT1G19730.1 CDS AT1G19730 ID=AT1G19730.1; Parent=AT1G19730; Name=AT1G19730.1; Note=Thioredoxin superfamily protein; curator_summary=encodes a cytosolic thioredoxin that reduces disulfide bridges of target proteins by the reversible formation of a disulfide bridge between two neighboring Cys residues present in the active site. Thioredoxins have been found to regulate a variety of biological reactions in prokaryotic and eukaryotic cells.; conf_class=2; symbol=ATTRX4; computational_description=ATTRX4%3B FUNCTIONS IN: oxidoreductase activity%2C acting on sulfur group of donors%2C disulfide as acceptor%3B INVOLVED IN: cell redox homeostasis%3B LOCATED IN: cytosol%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335)%2C Thioredoxin%2C core (InterPro:IPR015467)%2C Thioredoxin domain (InterPro:IPR013766)%2C Thioredoxin%2C conserved site (InterPro:IPR017937)%2C Thioredoxin-like subdomain (InterPro:IPR006662)%2C Thioredoxin-like (InterPro:IPR017936)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B BEST Arabidopsis thaliana protein match is: thioredoxin H-type 5 (TAIR:AT1G45145.1)%3B Has 19449 Blast hits to 19098 proteins in 2963 species: Archae - 279%3B Bacteria - 10803%3B Metazoa - 1859%3B Fungi - 973%3B Plants - 1850%3B Viruses - 7%3B Other Eukaryotes - 3678 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:7777559, PMID:12169696, PMID:15619004, PMID:15894741, PMID:17031546, PMID:18545667, PMID:18650403, PMID:18614707, PMID:18775970, PMID:24003859, PMID:24077073, locus:2013169; locus_type=protein_coding
AT1G19740.1	chr1:006824396	0.0	W/6824396-6825232	AT1G19740.1 CDS AT1G19740 ID=AT1G19740.1; Parent=AT1G19740; Name=AT1G19740.1; Note=ATP-dependent protease La (LON) domain protein; conf_class=1; computational_description=ATP-dependent protease La (LON) domain protein%3B FUNCTIONS IN: ATP-dependent peptidase activity%3B INVOLVED IN: proteolysis%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase S16%2C lon N-terminal (InterPro:IPR003111)%3B BEST Arabidopsis thaliana protein match is: ATP-dependent protease La (LON) domain protein (TAIR:AT1G75460.1)%3B Has 3644 Blast hits to 3644 proteins in 880 species: Archae - 0%3B Bacteria - 1707%3B Metazoa - 175%3B Fungi - 37%3B Plants - 117%3B Viruses - 0%3B Other Eukaryotes - 1608 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12185496, PMID:14576160, PMID:17181860, PMID:18650403, locus:2013144; locus_type=protein_coding
AT1G19750.1	chr1:006826997	0.0	W/6826997-6827146,6827317-6827577,6827666-6827825,6828006-6828187,6828917-6829154,6829406-6829560,6829649-6829738,6829847-6829918,6830017-6830061	AT1G19750.1 CDS AT1G19750 ID=AT1G19750.1; Parent=AT1G19750; Name=AT1G19750.1; Note=Transducin/WD40 repeat-like superfamily protein; conf_class=2; computational_description=Transducin/WD40 repeat-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782)%2C WD40 repeat%2C conserved site (InterPro:IPR019775)%2C WD40 repeat (InterPro:IPR001680)%2C G-protein beta WD-40 repeat%2C region (InterPro:IPR020472)%2C WD40 repeat-like-containing domain (InterPro:IPR011046)%2C WD40-repeat-containing domain (InterPro:IPR017986)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C WD40 repeat%2C subgroup (InterPro:IPR019781)%3B BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G27840.1)%3B Has 24643 Blast hits to 15569 proteins in 571 species: Archae - 22%3B Bacteria - 3931%3B Metazoa - 8671%3B Fungi - 5946%3B Plants - 3099%3B Viruses - 0%3B Other Eukaryotes - 2974 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14672542, PMID:15645454, PMID:18223036, PMID:18552200, PMID:20736450, locus:2035449; locus_type=protein_coding
AT1G19750.2	chr1:006827518	0.0	W/6827518-6827577,6827666-6827825,6828006-6828187,6828917-6829154,6829406-6829560,6829649-6829738,6829847-6829918,6830017-6830061	AT1G19750.2 CDS AT1G19750 ID=AT1G19750.2; Parent=AT1G19750; Name=AT1G19750.2; Note=Transducin/WD40 repeat-like superfamily protein; computational_description=Transducin/WD40 repeat-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782)%2C WD40 repeat%2C conserved site (InterPro:IPR019775)%2C WD40 repeat (InterPro:IPR001680)%2C G-protein beta WD-40 repeat%2C region (InterPro:IPR020472)%2C WD40 repeat-like-containing domain (InterPro:IPR011046)%2C WD40-repeat-containing domain (InterPro:IPR017986)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C WD40 repeat%2C subgroup (InterPro:IPR019781)%3B BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G27840.1)%3B Has 24643 Blast hits to 15569 proteins in 571 species: Archae - 22%3B Bacteria - 3931%3B Metazoa - 8671%3B Fungi - 5946%3B Plants - 3099%3B Viruses - 0%3B Other Eukaryotes - 2974 (source: NCBI BLink).; Dbxref=PMID:14672542, PMID:15645454, PMID:18223036, PMID:18552200, PMID:20736450, locus:2035449; locus_type=protein_coding
AT1G19770.1	chr1:006832426	0.0	W/6832426-6832468,6832564-6833702	AT1G19770.1 CDS AT1G19770 ID=AT1G19770.1; Parent=AT1G19770; Name=AT1G19770.1; Note=purine permease 14; curator_summary=Member of a family of proteins related to PUP1%2C a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins%2C across the plasma membrane.; conf_class=2; symbol=PUP14; Alias=ATPUP14, purine permease 14; full_name=purine permease 14; computational_description=purine permease 14 (PUP14)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853)%3B BEST Arabidopsis thaliana protein match is: purine permease 15 (TAIR:AT1G75470.1)%3B Has 334 Blast hits to 326 proteins in 20 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 1%3B Fungi - 0%3B Plants - 321%3B Viruses - 0%3B Other Eukaryotes - 6 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10662864, PMID:14576160, PMID:16212609, PMID:16489130, PMID:18829981, PMID:20736450, PMID:23551747, locus:2013124; locus_type=protein_coding
AT1G19780.1	chr1:006833885	0.0	C/6833885-6834631,6834711-6835059,6835137-6835450,6835547-6835759,6835842-6836433,6836532-6836578	AT1G19780.1 CDS AT1G19780 ID=AT1G19780.1; Parent=AT1G19780; Name=AT1G19780.1; Note=cyclic nucleotide gated channel 8; curator_summary=Encodes a member of the cyclic nucleotide gated channel (CNGC) family that is essential for male reproductive fertility.; conf_class=2; symbol=CNGC8; Alias=ATCNGC8, cyclic nucleotide gated channel 8; full_name=cyclic nucleotide gated channel 8; computational_description=cyclic nucleotide gated channel 8 (CNGC8)%3B FUNCTIONS IN: ion channel activity%2C cyclic nucleotide binding%2C calmodulin binding%3B INVOLVED IN: ion transport%2C transmembrane transport%3B LOCATED IN: membrane%3B EXPRESSED IN: petal%2C leaf whorl%2C male gametophyte%2C flower%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595)%2C Ion transport (InterPro:IPR005821)%2C Cyclic nucleotide-binding-like (InterPro:IPR018490)%2C RmlC-like jelly roll fold (InterPro:IPR014710)%2C IQ calmodulin-binding region (InterPro:IPR000048)%3B BEST Arabidopsis thaliana protein match is: cyclic nucleotide gated channel 7 (TAIR:AT1G15990.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11782485, PMID:12818663, PMID:16607029, PMID:18775970, PMID:23424627, locus:2013139; locus_type=protein_coding
AT1G19780.2	chr1:006833885	0.0	C/6833885-6834631,6834711-6835059,6835137-6835450,6835547-6835765	AT1G19780.2 CDS AT1G19780 ID=AT1G19780.2; Parent=AT1G19780; Name=AT1G19780.2; Note=cyclic nucleotide gated channel 8; symbol=CNGC8; Alias=ATCNGC8, cyclic nucleotide gated channel 8; full_name=cyclic nucleotide gated channel 8; curator_summary=Encodes a member of the cyclic nucleotide gated channel (CNGC) family that is essential for male reproductive fertility.; computational_description=cyclic nucleotide gated channel 8 (CNGC8)%3B FUNCTIONS IN: ion channel activity%2C cyclic nucleotide binding%2C calmodulin binding%3B INVOLVED IN: ion transport%2C transmembrane transport%3B LOCATED IN: membrane%3B EXPRESSED IN: petal%2C leaf whorl%2C male gametophyte%2C flower%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595)%2C Ion transport (InterPro:IPR005821)%2C Cyclic nucleotide-binding-like (InterPro:IPR018490)%2C RmlC-like jelly roll fold (InterPro:IPR014710)%2C IQ calmodulin-binding region (InterPro:IPR000048)%3B BEST Arabidopsis thaliana protein match is: cyclic nucleotide gated channel 7 (TAIR:AT1G15990.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=PMID:11782485, PMID:12818663, PMID:16607029, PMID:18775970, PMID:23424627, locus:2013139; locus_type=protein_coding
AT1G19790.1	chr1:006838400	0.0	C/6838400-6838788,6839183-6839831	AT1G19790.1 CDS AT1G19790 ID=AT1G19790.1; Parent=AT1G19790; Name=AT1G19790.1; Note=SHI-related sequence 7; curator_summary=A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence%2C many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium%2C stamen and leaf development in Arabidopsis.; conf_class=2; symbol=SRS7; full_name=SHI-related sequence 7; computational_description=SHI-related sequence 7 (SRS7)%3B CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1%2C C-terminal (InterPro:IPR006511)%2C Zinc finger%2C Lateral Root Primordium type 1 (InterPro:IPR006510)%2C Protein of unknown function DUF702 (InterPro:IPR007818)%3B BEST Arabidopsis thaliana protein match is: SHI-related sequence 5 (TAIR:AT1G75520.1)%3B Has 184 Blast hits to 184 proteins in 22 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2%3B Fungi - 8%3B Plants - 174%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11706176, PMID:12361963, PMID:16740146, PMID:20032078, PMID:20706774, PMID:22995285, locus:2013109; locus_type=protein_coding
AT1G19790.2	chr1:006838400	0.0	C/6838400-6838788,6839183-6839831	AT1G19790.2 CDS AT1G19790 ID=AT1G19790.2; Parent=AT1G19790; Name=AT1G19790.2; Note=SHI-related sequence 7; curator_summary=A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence%2C many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium%2C stamen and leaf development in Arabidopsis.; conf_class=2; symbol=SRS7; full_name=SHI-related sequence 7; computational_description=SHI-related sequence 7 (SRS7)%3B CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1%2C C-terminal (InterPro:IPR006511)%2C Zinc finger%2C Lateral Root Primordium type 1 (InterPro:IPR006510)%2C Protein of unknown function DUF702 (InterPro:IPR007818)%3B BEST Arabidopsis thaliana protein match is: SHI-related sequence 5 (TAIR:AT1G75520.1)%3B Has 184 Blast hits to 184 proteins in 22 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2%3B Fungi - 8%3B Plants - 174%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11706176, PMID:12361963, PMID:16740146, PMID:20032078, PMID:20706774, PMID:22995285, locus:2013109; locus_type=protein_coding
AT1TE22110	chr1:006840167	0.0	W/6840167-6840274	AT1TE22110 transposable_element AT1TE22110 ID=AT1TE22110; Name=AT1TE22110; Alias=ATCOPIA59
AT1TE22115	chr1:006842769	0.0	W/6842769-6843125	AT1TE22115 transposable_element AT1TE22115 ID=AT1TE22115; Name=AT1TE22115; Alias=ATREP11
AT1G19800.1	chr1:006846812	0.0	W/6846812-6846858,6846949-6847954	AT1G19800.1 CDS AT1G19800 ID=AT1G19800.1; Parent=AT1G19800; Name=AT1G19800.1; Note=trigalactosyldiacylglycerol 1; curator_summary=Encodes a permease-like protein involved in lipid transfer from the ER to the chloroplast%2C more specifically%2C transfer of phosphatidate across the chloroplast inner membrane. Mutant leaves accumulate trigalactosyldiacylglycerol%2C triacylglycerol and phosphatidate. Chloroplast lipids are altered in their fatty acid composition and as a consequence the development of chloroplasts in the mutants are impacted. The mutant seeds has a higher abortion rate. Mutations in this gene suppress the low temperature-induced phenotype of Arabidopsis tocopherol-deficient mutant vte2.; conf_class=2; symbol=ABCI14; Alias=TGD1, trigalactosyldiacylglycerol 1; full_name=ATP-binding cassette I14; computational_description=trigalactosyldiacylglycerol 1 (TGD1)%3B FUNCTIONS IN: lipid transporter activity%3B INVOLVED IN: lipid transport%3B LOCATED IN: chloroplast outer membrane%2C chloroplast%2C chloroplast inner membrane%2C chloroplast envelope%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF140 (InterPro:IPR003453)%3B Has 5322 Blast hits to 5322 proteins in 1401 species: Archae - 0%3B Bacteria - 4515%3B Metazoa - 1%3B Fungi - 0%3B Plants - 48%3B Viruses - 0%3B Other Eukaryotes - 758 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12743031, PMID:15381434, PMID:16199613, PMID:16818883, PMID:17938172, PMID:17919328, PMID:18299247, PMID:18689504, PMID:19416982, PMID:20345604, PMID:20410050, PMID:23297418, PMID:23505340, PMID:22544736, locus:2013099; locus_type=protein_coding
AT1G19800.2	chr1:006846812	0.0	W/6846812-6846858,6846949-6847954	AT1G19800.2 CDS AT1G19800 ID=AT1G19800.2; Parent=AT1G19800; Name=AT1G19800.2; Note=trigalactosyldiacylglycerol 1; curator_summary=Encodes a permease-like protein involved in lipid transfer from the ER to the chloroplast%2C more specifically%2C transfer of phosphatidate across the chloroplast inner membrane. Mutant leaves accumulate trigalactosyldiacylglycerol%2C triacylglycerol and phosphatidate. Chloroplast lipids are altered in their fatty acid composition and as a consequence the development of chloroplasts in the mutants are impacted. The mutant seeds has a higher abortion rate. Mutations in this gene suppress the low temperature-induced phenotype of Arabidopsis tocopherol-deficient mutant vte2.; conf_class=2; symbol=ABCI14; Alias=TGD1, trigalactosyldiacylglycerol 1; full_name=ATP-binding cassette I14; computational_description=trigalactosyldiacylglycerol 1 (TGD1)%3B FUNCTIONS IN: lipid transporter activity%3B INVOLVED IN: lipid transport%3B LOCATED IN: chloroplast outer membrane%2C chloroplast%2C chloroplast inner membrane%2C chloroplast envelope%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF140 (InterPro:IPR003453)%3B Has 5322 Blast hits to 5322 proteins in 1401 species: Archae - 0%3B Bacteria - 4515%3B Metazoa - 1%3B Fungi - 0%3B Plants - 48%3B Viruses - 0%3B Other Eukaryotes - 758 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12743031, PMID:15381434, PMID:16199613, PMID:16818883, PMID:17938172, PMID:17919328, PMID:18299247, PMID:18689504, PMID:19416982, PMID:20345604, PMID:20410050, PMID:23297418, PMID:23505340, PMID:22544736, locus:2013099; locus_type=protein_coding
AT1G19800.3	chr1:006846812	0.0	W/6846812-6846858,6846949-6847954	AT1G19800.3 CDS AT1G19800 ID=AT1G19800.3; Parent=AT1G19800; Name=AT1G19800.3; Note=trigalactosyldiacylglycerol 1; curator_summary=Encodes a permease-like protein involved in lipid transfer from the ER to the chloroplast%2C more specifically%2C transfer of phosphatidate across the chloroplast inner membrane. Mutant leaves accumulate trigalactosyldiacylglycerol%2C triacylglycerol and phosphatidate. Chloroplast lipids are altered in their fatty acid composition and as a consequence the development of chloroplasts in the mutants are impacted. The mutant seeds has a higher abortion rate. Mutations in this gene suppress the low temperature-induced phenotype of Arabidopsis tocopherol-deficient mutant vte2.; conf_class=2; symbol=ABCI14; Alias=TGD1, trigalactosyldiacylglycerol 1; full_name=ATP-binding cassette I14; computational_description=trigalactosyldiacylglycerol 1 (TGD1)%3B FUNCTIONS IN: lipid transporter activity%3B INVOLVED IN: lipid transport%3B LOCATED IN: chloroplast outer membrane%2C chloroplast%2C chloroplast inner membrane%2C chloroplast envelope%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF140 (InterPro:IPR003453)%3B Has 5322 Blast hits to 5322 proteins in 1401 species: Archae - 0%3B Bacteria - 4515%3B Metazoa - 1%3B Fungi - 0%3B Plants - 48%3B Viruses - 0%3B Other Eukaryotes - 758 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12743031, PMID:15381434, PMID:16199613, PMID:16818883, PMID:17938172, PMID:17919328, PMID:18299247, PMID:18689504, PMID:19416982, PMID:20345604, PMID:20410050, PMID:23297418, PMID:23505340, PMID:22544736, locus:2013099; locus_type=protein_coding
AT1G19800.4	chr1:006846812	0.0	W/6846812-6846858,6846949-6847954	AT1G19800.4 CDS AT1G19800 ID=AT1G19800.4; Parent=AT1G19800; Name=AT1G19800.4; Note=trigalactosyldiacylglycerol 1; symbol=ABCI14; Alias=TGD1, trigalactosyldiacylglycerol 1; full_name=ATP-binding cassette I14; Dbxref=PMID:12743031, PMID:15381434, PMID:16199613, PMID:16818883, PMID:17938172, PMID:17919328, PMID:18299247, PMID:18689504, PMID:19416982, PMID:20345604, PMID:20410050, PMID:23297418, PMID:23505340, PMID:22544736, locus:2013099; curator_summary=Encodes a permease-like protein involved in lipid transfer from the ER to the chloroplast%2C more specifically%2C transfer of phosphatidate across the chloroplast inner membrane. Mutant leaves accumulate trigalactosyldiacylglycerol%2C triacylglycerol and phosphatidate. Chloroplast lipids are altered in their fatty acid composition and as a consequence the development of chloroplasts in the mutants are impacted. The mutant seeds has a higher abortion rate. Mutations in this gene suppress the low temperature-induced phenotype of Arabidopsis tocopherol-deficient mutant vte2.; computational_description=trigalactosyldiacylglycerol 1 (TGD1)%3B FUNCTIONS IN: lipid transporter activity%3B INVOLVED IN: lipid transport%3B LOCATED IN: chloroplast outer membrane%2C chloroplast%2C chloroplast inner membrane%2C chloroplast envelope%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF140 (InterPro:IPR003453)%3B Has 5322 Blast hits to 5322 proteins in 1401 species: Archae - 0%3B Bacteria - 4515%3B Metazoa - 1%3B Fungi - 0%3B Plants - 48%3B Viruses - 0%3B Other Eukaryotes - 758 (source: NCBI BLink).; locus_type=protein_coding
AT1G19800.5	chr1:006846812	0.0	W/6846812-6846858,6846949-6847954	AT1G19800.5 CDS AT1G19800 ID=AT1G19800.5; Parent=AT1G19800; Name=AT1G19800.5; Note=trigalactosyldiacylglycerol 1; symbol=ABCI14; Alias=TGD1, trigalactosyldiacylglycerol 1; full_name=ATP-binding cassette I14; Dbxref=PMID:12743031, PMID:15381434, PMID:16199613, PMID:16818883, PMID:17938172, PMID:17919328, PMID:18299247, PMID:18689504, PMID:19416982, PMID:20345604, PMID:20410050, PMID:23297418, PMID:23505340, PMID:22544736, locus:2013099; curator_summary=Encodes a permease-like protein involved in lipid transfer from the ER to the chloroplast%2C more specifically%2C transfer of phosphatidate across the chloroplast inner membrane. Mutant leaves accumulate trigalactosyldiacylglycerol%2C triacylglycerol and phosphatidate. Chloroplast lipids are altered in their fatty acid composition and as a consequence the development of chloroplasts in the mutants are impacted. The mutant seeds has a higher abortion rate. Mutations in this gene suppress the low temperature-induced phenotype of Arabidopsis tocopherol-deficient mutant vte2.; computational_description=trigalactosyldiacylglycerol 1 (TGD1)%3B FUNCTIONS IN: lipid transporter activity%3B INVOLVED IN: lipid transport%3B LOCATED IN: chloroplast outer membrane%2C chloroplast%2C chloroplast inner membrane%2C chloroplast envelope%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF140 (InterPro:IPR003453)%3B Has 5322 Blast hits to 5322 proteins in 1401 species: Archae - 0%3B Bacteria - 4515%3B Metazoa - 1%3B Fungi - 0%3B Plants - 48%3B Viruses - 0%3B Other Eukaryotes - 758 (source: NCBI BLink).; locus_type=protein_coding
AT1G19800.6	chr1:006846812	0.0	W/6846812-6846858,6846949-6847954	AT1G19800.6 CDS AT1G19800 ID=AT1G19800.6; Parent=AT1G19800; Name=AT1G19800.6; Note=trigalactosyldiacylglycerol 1; symbol=ABCI14; Alias=TGD1, trigalactosyldiacylglycerol 1; full_name=ATP-binding cassette I14; Dbxref=PMID:12743031, PMID:15381434, PMID:16199613, PMID:16818883, PMID:17938172, PMID:17919328, PMID:18299247, PMID:18689504, PMID:19416982, PMID:20345604, PMID:20410050, PMID:23297418, PMID:23505340, PMID:22544736, locus:2013099; curator_summary=Encodes a permease-like protein involved in lipid transfer from the ER to the chloroplast%2C more specifically%2C transfer of phosphatidate across the chloroplast inner membrane. Mutant leaves accumulate trigalactosyldiacylglycerol%2C triacylglycerol and phosphatidate. Chloroplast lipids are altered in their fatty acid composition and as a consequence the development of chloroplasts in the mutants are impacted. The mutant seeds has a higher abortion rate. Mutations in this gene suppress the low temperature-induced phenotype of Arabidopsis tocopherol-deficient mutant vte2.; computational_description=trigalactosyldiacylglycerol 1 (TGD1)%3B FUNCTIONS IN: lipid transporter activity%3B INVOLVED IN: lipid transport%3B LOCATED IN: chloroplast outer membrane%2C chloroplast%2C chloroplast inner membrane%2C chloroplast envelope%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF140 (InterPro:IPR003453)%3B Has 5322 Blast hits to 5322 proteins in 1401 species: Archae - 0%3B Bacteria - 4515%3B Metazoa - 1%3B Fungi - 0%3B Plants - 48%3B Viruses - 0%3B Other Eukaryotes - 758 (source: NCBI BLink).; locus_type=protein_coding
AT1G19810.1	chr1:006848382	0.0	C/6848382-6849988	AT1G19810.1 pseudogenic_transcript AT1G19810 ID=AT1G19810.1; Parent=AT1G19810; Name=AT1G19810.1; index=1; Note=pseudogene; computational_description=pseudogene%2C putative cell division control protein%2C blastp match of 53%25 identity and 2.2e-113 P-value to GP|6069665|dbj|BAA85441.1||AP000616 EST D15969(C1695) corresponds to a region of the predicted gene.~similar to valosin-containing protein (U20213) %7BOryza sativa (japonica cultivar-group)%7D; Dbxref=PMID:15923328, locus:2013084, PMID:15923328, PMID:15923328, locus:2013084; locus_type=pseudogene
AT1G19830.1	chr1:006852230	0.0	W/6852230-6852583	AT1G19830.1 CDS AT1G19830 ID=AT1G19830.1; Parent=AT1G19830; Name=AT1G19830.1; Note=SAUR-like auxin-responsive protein family; conf_class=1; Alias=SAUR54, SMALL AUXIN UPREGULATED RNA 54; computational_description=SAUR-like auxin-responsive protein family %3B CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676)%3B BEST Arabidopsis thaliana protein match is: SAUR-like auxin-responsive protein family (TAIR:AT1G75580.1)%3B Has 1272 Blast hits to 1255 proteins in 27 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1271%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:2013074; locus_type=protein_coding
AT1G19835.1	chr1:006856212	0.0	C/6856212-6856568,6856663-6856720,6856803-6859041,6859119-6859338,6859439-6859513	AT1G19835.1 CDS AT1G19835 ID=AT1G19835.1; Parent=AT1G19835; Name=AT1G19835.1; Note=filament-like protein (DUF869); conf_class=2; computational_description=Plant protein of unknown function (DUF869)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF869%2C plant (InterPro:IPR008587)%3B BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF869) (TAIR:AT1G47900.2)%3B Has 56433 Blast hits to 30629 proteins in 2025 species: Archae - 861%3B Bacteria - 7306%3B Metazoa - 28779%3B Fungi - 5162%3B Plants - 3416%3B Viruses - 109%3B Other Eukaryotes - 10800 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11972898, PMID:15020757, PMID:16132859, PMID:18650403, locus:2824556; locus_type=protein_coding
AT1G19835.2	chr1:006856212	0.0	C/6856212-6856568,6856663-6856720,6856803-6859041,6859119-6859338,6859439-6859513	AT1G19835.2 CDS AT1G19835 ID=AT1G19835.2; Parent=AT1G19835; Name=AT1G19835.2; Note=filament-like protein (DUF869); conf_class=2; computational_description=Plant protein of unknown function (DUF869)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF869%2C plant (InterPro:IPR008587)%3B BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF869) (TAIR:AT1G47900.2)%3B Has 56433 Blast hits to 30629 proteins in 2025 species: Archae - 861%3B Bacteria - 7306%3B Metazoa - 28779%3B Fungi - 5162%3B Plants - 3416%3B Viruses - 109%3B Other Eukaryotes - 10800 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11972898, PMID:15020757, PMID:16132859, PMID:18650403, locus:2824556; locus_type=protein_coding
AT1G19835.3	chr1:006856212	0.0	C/6856212-6856568,6856663-6856720,6856803-6859041,6859119-6859338,6859439-6859513	AT1G19835.3 CDS AT1G19835 ID=AT1G19835.3; Parent=AT1G19835; Name=AT1G19835.3; Note=filament-like protein (DUF869); Dbxref=PMID:11972898, PMID:15020757, PMID:16132859, PMID:18650403, locus:2824556; computational_description=Plant protein of unknown function (DUF869)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF869%2C plant (InterPro:IPR008587)%3B BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF869) (TAIR:AT1G47900.2)%3B Has 56433 Blast hits to 30629 proteins in 2025 species: Archae - 861%3B Bacteria - 7306%3B Metazoa - 28779%3B Fungi - 5162%3B Plants - 3416%3B Viruses - 109%3B Other Eukaryotes - 10800 (source: NCBI BLink).; locus_type=protein_coding
AT1G19835.4	chr1:006856212	0.0	C/6856212-6856568,6856663-6856720,6856803-6859041,6859119-6859338,6859439-6859513	AT1G19835.4 CDS AT1G19835 ID=AT1G19835.4; Parent=AT1G19835; Name=AT1G19835.4; Note=filament-like protein (DUF869); Dbxref=PMID:11972898, PMID:15020757, PMID:16132859, PMID:18650403, locus:2824556; computational_description=Plant protein of unknown function (DUF869)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF869%2C plant (InterPro:IPR008587)%3B BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF869) (TAIR:AT1G47900.2)%3B Has 56433 Blast hits to 30629 proteins in 2025 species: Archae - 861%3B Bacteria - 7306%3B Metazoa - 28779%3B Fungi - 5162%3B Plants - 3416%3B Viruses - 109%3B Other Eukaryotes - 10800 (source: NCBI BLink).; locus_type=protein_coding
AT1G19835.5	chr1:006856212	0.0	C/6856212-6856568,6856663-6856720,6856803-6859041,6859119-6859338,6859439-6859513	AT1G19835.5 CDS AT1G19835 ID=AT1G19835.5; Parent=AT1G19835; Name=AT1G19835.5; Note=filament-like protein (DUF869); Dbxref=PMID:11972898, PMID:15020757, PMID:16132859, PMID:18650403, locus:2824556; computational_description=Plant protein of unknown function (DUF869)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF869%2C plant (InterPro:IPR008587)%3B BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF869) (TAIR:AT1G47900.2)%3B Has 56433 Blast hits to 30629 proteins in 2025 species: Archae - 861%3B Bacteria - 7306%3B Metazoa - 28779%3B Fungi - 5162%3B Plants - 3416%3B Viruses - 109%3B Other Eukaryotes - 10800 (source: NCBI BLink).; locus_type=protein_coding
AT1G19835.6	chr1:006856212	0.0	C/6856212-6856568,6856663-6856720,6856803-6859041,6859119-6859338,6859439-6859513	AT1G19835.6 CDS AT1G19835 ID=AT1G19835.6; Parent=AT1G19835; Name=AT1G19835.6; Note=filament-like protein (DUF869); Dbxref=PMID:11972898, PMID:15020757, PMID:16132859, PMID:18650403, locus:2824556; computational_description=Plant protein of unknown function (DUF869)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF869%2C plant (InterPro:IPR008587)%3B BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF869) (TAIR:AT1G47900.2)%3B Has 56433 Blast hits to 30629 proteins in 2025 species: Archae - 861%3B Bacteria - 7306%3B Metazoa - 28779%3B Fungi - 5162%3B Plants - 3416%3B Viruses - 109%3B Other Eukaryotes - 10800 (source: NCBI BLink).; locus_type=protein_coding
AT1G19840.1	chr1:006872794	0.0	C/6872794-6873255	AT1G19840.1 CDS AT1G19840 ID=AT1G19840.1; Parent=AT1G19840; Name=AT1G19840.1; Note=SAUR-like auxin-responsive protein family; conf_class=1; Alias=SAUR53, SMALL AUXIN UPREGULATED RNA 53; computational_description=SAUR-like auxin-responsive protein family %3B CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676)%3B BEST Arabidopsis thaliana protein match is: SAUR-like auxin-responsive protein family (TAIR:AT1G75590.1)%3B Has 1391 Blast hits to 1377 proteins in 26 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1390%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15282545, PMID:15276459, PMID:15734912, PMID:16367961, PMID:16489130, locus:2035444; locus_type=protein_coding
AT1TE22230	chr1:006880492	0.0	C/6880492-6880695	AT1TE22230 transposable_element AT1TE22230 ID=AT1TE22230; Name=AT1TE22230; Alias=ATCOPIA17
AT1G19850.uORF4	chr1:006887019	0.0	W/6887019-6887057	AT1G19850.uORF4 uORF AT1G19850 ID=AT1G19850.uORF4; Derives_from=AT1G19850; Name=AT1G19850.uORF4; Note=Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-like protein; curator_summary=Encodes a transcription factor (IAA24) mediating embryo axis formation and vascular development. Similar to AUXIN RESPONSIVE FACTOR 1 (ARF1) shown to bind to auxin responsive elements (AREs)%2C and to the maize transcriptional activator VIVIPAROUS 1( VP1). In situ hybridization shows expression in provascular tissue of embryos%2C the emerging shoot primordia%2C then is restricted to provascular tissue%2C and in the root central vascular cylinder.; symbol=MP; Alias=ARF5, AUXIN RESPONSE FACTOR 5, IAA24, indole-3-acetic acid inducible 24; full_name=MONOPTEROS; computational_description=MONOPTEROS (MP)%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%2C promoter binding%3B INVOLVED IN: in 8 processes%3B LOCATED IN: nucleus%2C membrane%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525)%2C Transcriptional factor B3 (InterPro:IPR003340)%2C AUX/IAA protein (InterPro:IPR003311)%2C Auxin response factor (InterPro:IPR010525)%3B BEST Arabidopsis thaliana protein match is: auxin response factor 19 (TAIR:AT1G19220.1)%3B Has 2568 Blast hits to 2208 proteins in 92 species: Archae - 0%3B Bacteria - 11%3B Metazoa - 4%3B Fungi - 3%3B Plants - 2536%3B Viruses - 0%3B Other Eukaryotes - 14 (source: NCBI BLink).; Dbxref=PMID:10887077, PMID:10068632, PMID:9482737, PMID:9342315, PMID:8983181, PMID:8904808, PMID:11118137, PMID:11283339, PMID:12050130, PMID:12101120, PMID:12163400, PMID:12644682, PMID:12682009, PMID:14973283, PMID:15270688, PMID:15659631, PMID:15743878, PMID:16489122, PMID:16459305, PMID:15992545, PMID:16854942, PMID:17217464, PMID:17553903, PMID:18000043, PMID:18258861, PMID:19011104, PMID:19392692, PMID:19369397, PMID:19363152, PMID:15889151, PMID:18685044, PMID:19710171, PMID:19704497, PMID:19901531, PMID:20133796, PMID:20220754, PMID:20577215, PMID:20643354, PMID:20852917, PMID:21149702, PMID:21228633, PMID:21478855, PMID:22100645, PMID:22158464, PMID:22320407, PMID:22378640, PMID:22264733, PMID:22527388, PMID:23319550, PMID:22349732, PMID:22751359, PMID:23362345, PMID:23375585, PMID:23941199, PMID:23821653, PMID:24281793, PMID:24485461, PMID:25145395, PMID:25217509, PMID:25336688, PMID:25274430, PMID:25617434, PMID:25566309, locus:2035454; locus_type=protein_coding
AT1G19850.uORF1	chr1:006887047	0.0	W/6887047-6887121	AT1G19850.uORF1 uORF AT1G19850 ID=AT1G19850.uORF1; Derives_from=AT1G19850; Name=AT1G19850.uORF1; Note=Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-like protein; curator_summary=Encodes a transcription factor (IAA24) mediating embryo axis formation and vascular development. Similar to AUXIN RESPONSIVE FACTOR 1 (ARF1) shown to bind to auxin responsive elements (AREs)%2C and to the maize transcriptional activator VIVIPAROUS 1( VP1). In situ hybridization shows expression in provascular tissue of embryos%2C the emerging shoot primordia%2C then is restricted to provascular tissue%2C and in the root central vascular cylinder.; symbol=MP; Alias=ARF5, AUXIN RESPONSE FACTOR 5, IAA24, indole-3-acetic acid inducible 24; full_name=MONOPTEROS; computational_description=MONOPTEROS (MP)%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%2C promoter binding%3B INVOLVED IN: in 8 processes%3B LOCATED IN: nucleus%2C membrane%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525)%2C Transcriptional factor B3 (InterPro:IPR003340)%2C AUX/IAA protein (InterPro:IPR003311)%2C Auxin response factor (InterPro:IPR010525)%3B BEST Arabidopsis thaliana protein match is: auxin response factor 19 (TAIR:AT1G19220.1)%3B Has 2568 Blast hits to 2208 proteins in 92 species: Archae - 0%3B Bacteria - 11%3B Metazoa - 4%3B Fungi - 3%3B Plants - 2536%3B Viruses - 0%3B Other Eukaryotes - 14 (source: NCBI BLink).; Dbxref=PMID:10887077, PMID:10068632, PMID:9482737, PMID:9342315, PMID:8983181, PMID:8904808, PMID:11118137, PMID:11283339, PMID:12050130, PMID:12101120, PMID:12163400, PMID:12644682, PMID:12682009, PMID:14973283, PMID:15270688, PMID:15659631, PMID:15743878, PMID:16489122, PMID:16459305, PMID:15992545, PMID:16854942, PMID:17217464, PMID:17553903, PMID:18000043, PMID:18258861, PMID:19011104, PMID:19392692, PMID:19369397, PMID:19363152, PMID:15889151, PMID:18685044, PMID:19710171, PMID:19704497, PMID:19901531, PMID:20133796, PMID:20220754, PMID:20577215, PMID:20643354, PMID:20852917, PMID:21149702, PMID:21228633, PMID:21478855, PMID:22100645, PMID:22158464, PMID:22320407, PMID:22378640, PMID:22264733, PMID:22527388, PMID:23319550, PMID:22349732, PMID:22751359, PMID:23362345, PMID:23375585, PMID:23941199, PMID:23821653, PMID:24281793, PMID:24485461, PMID:25145395, PMID:25217509, PMID:25336688, PMID:25274430, PMID:25617434, PMID:25566309, locus:2035454; locus_type=protein_coding
AT1G19850.uORF3	chr1:006887080	0.0	W/6887080-6887121	AT1G19850.uORF3 uORF AT1G19850 ID=AT1G19850.uORF3; Derives_from=AT1G19850; Name=AT1G19850.uORF3; Note=Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-like protein; curator_summary=Encodes a transcription factor (IAA24) mediating embryo axis formation and vascular development. Similar to AUXIN RESPONSIVE FACTOR 1 (ARF1) shown to bind to auxin responsive elements (AREs)%2C and to the maize transcriptional activator VIVIPAROUS 1( VP1). In situ hybridization shows expression in provascular tissue of embryos%2C the emerging shoot primordia%2C then is restricted to provascular tissue%2C and in the root central vascular cylinder.; symbol=MP; Alias=ARF5, AUXIN RESPONSE FACTOR 5, IAA24, indole-3-acetic acid inducible 24; full_name=MONOPTEROS; computational_description=MONOPTEROS (MP)%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%2C promoter binding%3B INVOLVED IN: in 8 processes%3B LOCATED IN: nucleus%2C membrane%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525)%2C Transcriptional factor B3 (InterPro:IPR003340)%2C AUX/IAA protein (InterPro:IPR003311)%2C Auxin response factor (InterPro:IPR010525)%3B BEST Arabidopsis thaliana protein match is: auxin response factor 19 (TAIR:AT1G19220.1)%3B Has 2568 Blast hits to 2208 proteins in 92 species: Archae - 0%3B Bacteria - 11%3B Metazoa - 4%3B Fungi - 3%3B Plants - 2536%3B Viruses - 0%3B Other Eukaryotes - 14 (source: NCBI BLink).; Dbxref=PMID:10887077, PMID:10068632, PMID:9482737, PMID:9342315, PMID:8983181, PMID:8904808, PMID:11118137, PMID:11283339, PMID:12050130, PMID:12101120, PMID:12163400, PMID:12644682, PMID:12682009, PMID:14973283, PMID:15270688, PMID:15659631, PMID:15743878, PMID:16489122, PMID:16459305, PMID:15992545, PMID:16854942, PMID:17217464, PMID:17553903, PMID:18000043, PMID:18258861, PMID:19011104, PMID:19392692, PMID:19369397, PMID:19363152, PMID:15889151, PMID:18685044, PMID:19710171, PMID:19704497, PMID:19901531, PMID:20133796, PMID:20220754, PMID:20577215, PMID:20643354, PMID:20852917, PMID:21149702, PMID:21228633, PMID:21478855, PMID:22100645, PMID:22158464, PMID:22320407, PMID:22378640, PMID:22264733, PMID:22527388, PMID:23319550, PMID:22349732, PMID:22751359, PMID:23362345, PMID:23375585, PMID:23941199, PMID:23821653, PMID:24281793, PMID:24485461, PMID:25145395, PMID:25217509, PMID:25336688, PMID:25274430, PMID:25617434, PMID:25566309, locus:2035454; locus_type=protein_coding
AT1G19850.uORF2	chr1:006887146	0.0	W/6887146-6887196	AT1G19850.uORF2 uORF AT1G19850 ID=AT1G19850.uORF2; Derives_from=AT1G19850; Name=AT1G19850.uORF2; Note=Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-like protein; curator_summary=Encodes a transcription factor (IAA24) mediating embryo axis formation and vascular development. Similar to AUXIN RESPONSIVE FACTOR 1 (ARF1) shown to bind to auxin responsive elements (AREs)%2C and to the maize transcriptional activator VIVIPAROUS 1( VP1). In situ hybridization shows expression in provascular tissue of embryos%2C the emerging shoot primordia%2C then is restricted to provascular tissue%2C and in the root central vascular cylinder.; symbol=MP; Alias=ARF5, AUXIN RESPONSE FACTOR 5, IAA24, indole-3-acetic acid inducible 24; full_name=MONOPTEROS; computational_description=MONOPTEROS (MP)%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%2C promoter binding%3B INVOLVED IN: in 8 processes%3B LOCATED IN: nucleus%2C membrane%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525)%2C Transcriptional factor B3 (InterPro:IPR003340)%2C AUX/IAA protein (InterPro:IPR003311)%2C Auxin response factor (InterPro:IPR010525)%3B BEST Arabidopsis thaliana protein match is: auxin response factor 19 (TAIR:AT1G19220.1)%3B Has 2568 Blast hits to 2208 proteins in 92 species: Archae - 0%3B Bacteria - 11%3B Metazoa - 4%3B Fungi - 3%3B Plants - 2536%3B Viruses - 0%3B Other Eukaryotes - 14 (source: NCBI BLink).; Dbxref=PMID:10887077, PMID:10068632, PMID:9482737, PMID:9342315, PMID:8983181, PMID:8904808, PMID:11118137, PMID:11283339, PMID:12050130, PMID:12101120, PMID:12163400, PMID:12644682, PMID:12682009, PMID:14973283, PMID:15270688, PMID:15659631, PMID:15743878, PMID:16489122, PMID:16459305, PMID:15992545, PMID:16854942, PMID:17217464, PMID:17553903, PMID:18000043, PMID:18258861, PMID:19011104, PMID:19392692, PMID:19369397, PMID:19363152, PMID:15889151, PMID:18685044, PMID:19710171, PMID:19704497, PMID:19901531, PMID:20133796, PMID:20220754, PMID:20577215, PMID:20643354, PMID:20852917, PMID:21149702, PMID:21228633, PMID:21478855, PMID:22100645, PMID:22158464, PMID:22320407, PMID:22378640, PMID:22264733, PMID:22527388, PMID:23319550, PMID:22349732, PMID:22751359, PMID:23362345, PMID:23375585, PMID:23941199, PMID:23821653, PMID:24281793, PMID:24485461, PMID:25145395, PMID:25217509, PMID:25336688, PMID:25274430, PMID:25617434, PMID:25566309, locus:2035454; locus_type=protein_coding
AT1G19850.1	chr1:006887353	0.0	W/6887353-6887485,6887636-6887751,6887860-6887958,6888049-6888105,6888194-6888349,6888429-6888513,6888590-6888680,6888777-6888941,6889024-6889146,6889232-6889443,6889523-6890676,6890769-6890959,6891056-6891182	AT1G19850.1 CDS AT1G19850 ID=AT1G19850.1; Parent=AT1G19850; Name=AT1G19850.1; Note=Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-like protein; curator_summary=Encodes a transcription factor (IAA24) mediating embryo axis formation and vascular development. Similar to AUXIN RESPONSIVE FACTOR 1 (ARF1) shown to bind to auxin responsive elements (AREs)%2C and to the maize transcriptional activator VIVIPAROUS 1( VP1). In situ hybridization shows expression in provascular tissue of embryos%2C the emerging shoot primordia%2C then is restricted to provascular tissue%2C and in the root central vascular cylinder.; conf_class=2; symbol=MP; Alias=ARF5, AUXIN RESPONSE FACTOR 5, IAA24, indole-3-acetic acid inducible 24; full_name=MONOPTEROS; computational_description=MONOPTEROS (MP)%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%2C promoter binding%3B INVOLVED IN: in 8 processes%3B LOCATED IN: nucleus%2C membrane%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525)%2C Transcriptional factor B3 (InterPro:IPR003340)%2C AUX/IAA protein (InterPro:IPR003311)%2C Auxin response factor (InterPro:IPR010525)%3B BEST Arabidopsis thaliana protein match is: auxin response factor 19 (TAIR:AT1G19220.1)%3B Has 2568 Blast hits to 2208 proteins in 92 species: Archae - 0%3B Bacteria - 11%3B Metazoa - 4%3B Fungi - 3%3B Plants - 2536%3B Viruses - 0%3B Other Eukaryotes - 14 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10887077, PMID:10068632, PMID:9482737, PMID:9342315, PMID:8983181, PMID:8904808, PMID:11118137, PMID:11283339, PMID:12050130, PMID:12101120, PMID:12163400, PMID:12644682, PMID:12682009, PMID:14973283, PMID:15270688, PMID:15659631, PMID:15743878, PMID:16489122, PMID:16459305, PMID:15992545, PMID:16854942, PMID:17217464, PMID:17553903, PMID:18000043, PMID:18258861, PMID:19011104, PMID:19392692, PMID:19369397, PMID:19363152, PMID:15889151, PMID:18685044, PMID:19710171, PMID:19704497, PMID:19901531, PMID:20133796, PMID:20220754, PMID:20577215, PMID:20643354, PMID:20852917, PMID:21149702, PMID:21228633, PMID:21478855, PMID:22100645, PMID:22158464, PMID:22320407, PMID:22378640, PMID:22264733, PMID:22527388, PMID:23319550, PMID:22349732, PMID:22751359, PMID:23362345, PMID:23375585, PMID:23941199, PMID:23821653, PMID:24281793, PMID:24485461, PMID:25145395, PMID:25217509, PMID:25336688, PMID:25274430, PMID:25617434, PMID:25566309, locus:2035454; locus_type=protein_coding
AT1G19850.2	chr1:006887386	0.0	W/6887386-6887485,6887636-6887751,6887860-6887958,6888049-6888105,6888194-6888349,6888429-6888513,6888590-6888680,6888777-6888941,6889024-6889146,6889232-6889443,6889523-6890676,6890769-6890959,6891056-6891182	AT1G19850.2 CDS AT1G19850 ID=AT1G19850.2; Parent=AT1G19850; Name=AT1G19850.2; Note=Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-like protein; symbol=MP; Alias=ARF5, AUXIN RESPONSE FACTOR 5, IAA24, indole-3-acetic acid inducible 24; full_name=MONOPTEROS; curator_summary=Encodes a transcription factor (IAA24) mediating embryo axis formation and vascular development. Similar to AUXIN RESPONSIVE FACTOR 1 (ARF1) shown to bind to auxin responsive elements (AREs)%2C and to the maize transcriptional activator VIVIPAROUS 1( VP1). In situ hybridization shows expression in provascular tissue of embryos%2C the emerging shoot primordia%2C then is restricted to provascular tissue%2C and in the root central vascular cylinder.; computational_description=MONOPTEROS (MP)%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%2C promoter binding%3B INVOLVED IN: in 8 processes%3B LOCATED IN: nucleus%2C membrane%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525)%2C Transcriptional factor B3 (InterPro:IPR003340)%2C AUX/IAA protein (InterPro:IPR003311)%2C Auxin response factor (InterPro:IPR010525)%3B BEST Arabidopsis thaliana protein match is: auxin response factor 19 (TAIR:AT1G19220.1)%3B Has 2568 Blast hits to 2208 proteins in 92 species: Archae - 0%3B Bacteria - 11%3B Metazoa - 4%3B Fungi - 3%3B Plants - 2536%3B Viruses - 0%3B Other Eukaryotes - 14 (source: NCBI BLink).; Dbxref=PMID:10887077, PMID:10068632, PMID:9482737, PMID:9342315, PMID:8983181, PMID:8904808, PMID:11118137, PMID:11283339, PMID:12050130, PMID:12101120, PMID:12163400, PMID:12644682, PMID:12682009, PMID:14973283, PMID:15270688, PMID:15659631, PMID:15743878, PMID:16489122, PMID:16459305, PMID:15992545, PMID:16854942, PMID:17217464, PMID:17553903, PMID:18000043, PMID:18258861, PMID:19011104, PMID:19392692, PMID:19369397, PMID:19363152, PMID:15889151, PMID:18685044, PMID:19710171, PMID:19704497, PMID:19901531, PMID:20133796, PMID:20220754, PMID:20577215, PMID:20643354, PMID:20852917, PMID:21149702, PMID:21228633, PMID:21478855, PMID:22100645, PMID:22158464, PMID:22320407, PMID:22378640, PMID:22264733, PMID:22527388, PMID:23319550, PMID:22349732, PMID:22751359, PMID:23362345, PMID:23375585, PMID:23941199, PMID:23821653, PMID:24281793, PMID:24485461, PMID:25145395, PMID:25217509, PMID:25336688, PMID:25274430, PMID:25617434, PMID:25566309, locus:2035454; locus_type=protein_coding
AT1G19860.1	chr1:006891654	0.0	C/6891654-6892518,6892616-6892740,6893039-6893236,6894347-6894400	AT1G19860.1 CDS AT1G19860 ID=AT1G19860.1; Parent=AT1G19860; Name=AT1G19860.1; Note=Zinc finger C-x8-C-x5-C-x3-H type family protein; conf_class=2; computational_description=Zinc finger C-x8-C-x5-C-x3-H type family protein%3B FUNCTIONS IN: zinc ion binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C CCCH-type (InterPro:IPR000571)%3B BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT5G66270.1)%3B Has 210 Blast hits to 187 proteins in 41 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 33%3B Fungi - 12%3B Plants - 160%3B Viruses - 0%3B Other Eukaryotes - 5 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15666155, PMID:15546358, PMID:18221561, PMID:18775970, locus:2035434; locus_type=protein_coding
AT1G19860.2	chr1:006891654	0.0	C/6891654-6892518,6892616-6892740,6893039-6893236,6893370-6893429	AT1G19860.2 CDS AT1G19860 ID=AT1G19860.2; Parent=AT1G19860; Name=AT1G19860.2; Note=Zinc finger C-x8-C-x5-C-x3-H type family protein; computational_description=Zinc finger C-x8-C-x5-C-x3-H type family protein%3B FUNCTIONS IN: zinc ion binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C CCCH-type (InterPro:IPR000571)%3B BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT5G66270.1)%3B Has 210 Blast hits to 187 proteins in 41 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 33%3B Fungi - 12%3B Plants - 160%3B Viruses - 0%3B Other Eukaryotes - 5 (source: NCBI BLink).; Dbxref=PMID:15666155, PMID:15546358, PMID:18221561, PMID:18775970, locus:2035434; locus_type=protein_coding
AT1G19870.1	chr1:006895400	0.0	C/6895400-6895419,6895513-6896950,6897065-6897124,6897206-6897385,6897544-6898137,6898447-6898539	AT1G19870.1 CDS AT1G19870 ID=AT1G19870.1; Parent=AT1G19870; Name=AT1G19870.1; Note=IQ-domain 32; curator_summary=Encodes a microtubule-associated protein.; conf_class=2; symbol=iqd32; Alias=IQD32, IQ-domain 32; full_name=IQ-domain 32; computational_description=IQ-domain 32 (iqd32)%3B FUNCTIONS IN: calmodulin binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cytosol%2C nucleus%2C plasma membrane%2C chloroplast envelope%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048)%3B BEST Arabidopsis thaliana protein match is: IQ-domain 31 (TAIR:AT1G74690.1)%3B Has 9103 Blast hits to 6594 proteins in 683 species: Archae - 22%3B Bacteria - 1108%3B Metazoa - 3792%3B Fungi - 1037%3B Plants - 1107%3B Viruses - 33%3B Other Eukaryotes - 2004 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:16368012, PMID:16635983, PMID:17586839, PMID:18433157, PMID:18650403, PMID:20733066, PMID:22645532, PMID:24134884, locus:2035428; locus_type=protein_coding
AT1G19870.2	chr1:006895400	0.0	C/6895400-6895419,6895513-6896950,6897065-6897124,6897206-6897385,6897544-6897681	AT1G19870.2 CDS AT1G19870 ID=AT1G19870.2; Parent=AT1G19870; Name=AT1G19870.2; Note=IQ-domain 32; symbol=iqd32; Alias=IQD32, IQ-domain 32; full_name=IQ-domain 32; curator_summary=Encodes a microtubule-associated protein.; computational_description=IQ-domain 32 (iqd32)%3B FUNCTIONS IN: calmodulin binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cytosol%2C nucleus%2C plasma membrane%2C chloroplast envelope%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048)%3B BEST Arabidopsis thaliana protein match is: IQ-domain 31 (TAIR:AT1G74690.1)%3B Has 9103 Blast hits to 6594 proteins in 683 species: Archae - 22%3B Bacteria - 1108%3B Metazoa - 3792%3B Fungi - 1037%3B Plants - 1107%3B Viruses - 33%3B Other Eukaryotes - 2004 (source: NCBI BLink).; Dbxref=PMID:14576160, PMID:16368012, PMID:16635983, PMID:17586839, PMID:18433157, PMID:18650403, PMID:20733066, PMID:22645532, PMID:24134884, locus:2035428; locus_type=protein_coding
AT1G19880.1	chr1:006900648	0.0	C/6900648-6900979,6901055-6901088,6901209-6901278,6901362-6901415,6901496-6901618,6901700-6901781,6901874-6901998,6902080-6902103,6902198-6902228,6902323-6902440,6902728-6902779,6902892-6903015,6903085-6903206,6903313-6903380,6903473-6903534,6903623-6903818	AT1G19880.1 CDS AT1G19880 ID=AT1G19880.1; Parent=AT1G19880; Name=AT1G19880.1; Note=Regulator of chromosome condensation (RCC1) family protein; conf_class=2; computational_description=Regulator of chromosome condensation (RCC1) family protein%3B CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091)%2C Regulator of chromosome condensation%2C RCC1 (InterPro:IPR000408)%3B BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family protein (TAIR:AT5G63860.1)%3B Has 17859 Blast hits to 6314 proteins in 497 species: Archae - 78%3B Bacteria - 2347%3B Metazoa - 6181%3B Fungi - 1100%3B Plants - 2708%3B Viruses - 16%3B Other Eukaryotes - 5429 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2035423; locus_type=protein_coding
AT1G19890.1	chr1:006905034	0.0	W/6905034-6905105,6905220-6905299,6905398-6905488,6905622-6905792	AT1G19890.1 CDS AT1G19890 ID=AT1G19890.1; Parent=AT1G19890; Name=AT1G19890.1; Note=male-gamete-specific histone H3; curator_summary=histone 3.3%2C male-gamete-specific expression. Direct target promoter of the male germline-specific transcription factor DUO1.; conf_class=3; symbol=MGH3; Alias=ATMGH3, MALE-GAMETE-SPECIFIC HISTONE H3; full_name=male-gamete-specific histone H3; computational_description=male-gamete-specific histone H3 (MGH3)%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: double fertilization forming a zygote and endosperm%3B LOCATED IN: generative cell nucleus%2C nucleus%3B EXPRESSED IN: 6 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C K second mitotic division stage%2C 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164)%2C Histone-fold (InterPro:IPR009072)%2C Histone core (InterPro:IPR007125)%3B BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT4G40030.2)%3B Has 14587 Blast hits to 14579 proteins in 7249 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 10590%3B Fungi - 2033%3B Plants - 1270%3B Viruses - 0%3B Other Eukaryotes - 694 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:16262706, PMID:16489130, PMID:16571618, PMID:17555967, PMID:18667720, PMID:18775970, PMID:21285328, locus:2035415; locus_type=protein_coding
AT1G19900.1	chr1:006907038	0.0	C/6907038-6908684	AT1G19900.1 CDS AT1G19900 ID=AT1G19900.1; Parent=AT1G19900; Name=AT1G19900.1; Note=glyoxal oxidase-related protein; conf_class=1; computational_description=glyoxal oxidase-related protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: root%3B CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch%2C beta-propeller (InterPro:IPR011043)%2C Galactose oxidase%2C beta-propeller (InterPro:IPR015916)%2C Immunoglobulin E-set (InterPro:IPR014756)%2C Glyoxal oxidase%2C N-terminal (InterPro:IPR009880)%2C Domain of unknown function DUF1929 (InterPro:IPR015202)%3B BEST Arabidopsis thaliana protein match is: glyoxal oxidase-related protein (TAIR:AT1G75620.1)%3B Has 833 Blast hits to 830 proteins in 167 species: Archae - 0%3B Bacteria - 311%3B Metazoa - 0%3B Fungi - 239%3B Plants - 262%3B Viruses - 0%3B Other Eukaryotes - 21 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15086809, locus:2035408; locus_type=protein_coding
AT1TE22330	chr1:006910344	0.0	C/6910344-6910774	AT1TE22330 transposable_element AT1TE22330 ID=AT1TE22330; Name=AT1TE22330; Alias=HELITRONY1B
AT1G19910.1	chr1:006913317	0.0	W/6913317-6913395,6913501-6913786,6914190-6914322	AT1G19910.1 CDS AT1G19910 ID=AT1G19910.1; Parent=AT1G19910; Name=AT1G19910.1; Note=ATPase%2C F0/V0 complex%2C subunit C protein; curator_summary=vacuolar H+-pumping ATPase 16 kDa proteolipid (ava-p2); conf_class=2; symbol=AVA-P2; computational_description=AVA-P2%3B FUNCTIONS IN: ATPase activity%2C proton-transporting ATPase activity%2C rotational mechanism%3B INVOLVED IN: ATP synthesis coupled proton transport%3B LOCATED IN: vacuolar proton-transporting V-type ATPase%2C V0 domain%2C plasma membrane%2C vacuole%3B EXPRESSED IN: cultured cell%3B CONTAINS InterPro DOMAIN/s: ATPase%2C F0/V0 complex%2C subunit C (InterPro:IPR002379)%2C ATPase%2C V0 complex%2C proteolipid subunit C%2C eukaryotic (InterPro:IPR011555)%2C ATPase%2C V0 complex%2C proteolipid subunit C (InterPro:IPR000245)%3B BEST Arabidopsis thaliana protein match is: vacuolar-type H(+)-ATPase C3 (TAIR:AT4G38920.1)%3B Has 2718 Blast hits to 2491 proteins in 678 species: Archae - 169%3B Bacteria - 703%3B Metazoa - 633%3B Fungi - 468%3B Plants - 340%3B Viruses - 0%3B Other Eukaryotes - 405 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:7579175, PMID:11950611, PMID:12481097, PMID:12969422, PMID:15051861, PMID:15215502, PMID:16581873, PMID:17660356, PMID:18507826, locus:2035401; locus_type=protein_coding
AT1G19910.2	chr1:006913317	0.0	W/6913317-6913395,6913501-6913790	AT1G19910.2 CDS AT1G19910 ID=AT1G19910.2; Parent=AT1G19910; Name=AT1G19910.2; Note=ATPase%2C F0/V0 complex%2C subunit C protein; symbol=AVA-P2; curator_summary=vacuolar H+-pumping ATPase 16 kDa proteolipid (ava-p2); computational_description=AVA-P2%3B FUNCTIONS IN: ATPase activity%2C proton-transporting ATPase activity%2C rotational mechanism%3B INVOLVED IN: ATP synthesis coupled proton transport%3B LOCATED IN: vacuolar proton-transporting V-type ATPase%2C V0 domain%2C plasma membrane%2C vacuole%3B EXPRESSED IN: cultured cell%3B CONTAINS InterPro DOMAIN/s: ATPase%2C F0/V0 complex%2C subunit C (InterPro:IPR002379)%2C ATPase%2C V0 complex%2C proteolipid subunit C%2C eukaryotic (InterPro:IPR011555)%2C ATPase%2C V0 complex%2C proteolipid subunit C (InterPro:IPR000245)%3B BEST Arabidopsis thaliana protein match is: vacuolar-type H(+)-ATPase C3 (TAIR:AT4G38920.1)%3B Has 2718 Blast hits to 2491 proteins in 678 species: Archae - 169%3B Bacteria - 703%3B Metazoa - 633%3B Fungi - 468%3B Plants - 340%3B Viruses - 0%3B Other Eukaryotes - 405 (source: NCBI BLink).; Dbxref=PMID:7579175, PMID:11950611, PMID:12481097, PMID:12969422, PMID:15051861, PMID:15215502, PMID:16581873, PMID:17660356, PMID:18507826, locus:2035401; locus_type=protein_coding
AT1G19920.1	chr1:006914835	0.0	C/6914835-6914969,6915083-6915169,6915273-6915533,6915625-6916030,6916116-6916657	AT1G19920.1 CDS AT1G19920 ID=AT1G19920.1; Parent=AT1G19920; Name=AT1G19920.1; Note=Pseudouridine synthase/archaeosine transglycosylase-like family protein; curator_summary=encodes a chloroplast form of ATP sulfurylase.; conf_class=2; symbol=APS2; computational_description=APS2%3B FUNCTIONS IN: sulfate adenylyltransferase (ATP) activity%3B INVOLVED IN: sulfate assimilation%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729)%2C Pseudouridine synthase/archaeosine transglycosylase-like (InterPro:IPR015947)%2C Sulphate adenylyltransferase (InterPro:IPR002650)%3B BEST Arabidopsis thaliana protein match is: ATP sulfurylase 1 (TAIR:AT3G22890.1)%3B Has 2101 Blast hits to 2098 proteins in 651 species: Archae - 98%3B Bacteria - 865%3B Metazoa - 242%3B Fungi - 201%3B Plants - 187%3B Viruses - 0%3B Other Eukaryotes - 508 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10806350, PMID:9536047, PMID:8647819, PMID:7487067, PMID:18650403, PMID:21365755, PMID:25416292, PMID:25601874, locus:2035395; locus_type=protein_coding
AT1G19930.1	chr1:006917020	0.0	W/6917020-6917545,6917630-6918138	AT1G19930.1 CDS AT1G19930 ID=AT1G19930.1; Parent=AT1G19930; Name=AT1G19930.1; Note=Galactose oxidase/kelch repeat superfamily protein; conf_class=6; computational_description=Galactose oxidase/kelch repeat superfamily protein%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C Galactose oxidase/kelch%2C beta-propeller (InterPro:IPR011043)%2C Kelch repeat type 1 (InterPro:IPR006652)%2C Kelch related (InterPro:IPR013089)%2C Kelch-type beta propeller (InterPro:IPR015915)%3B BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G60570.1)%3B Has 1401 Blast hits to 1359 proteins in 118 species: Archae - 2%3B Bacteria - 52%3B Metazoa - 261%3B Fungi - 0%3B Plants - 1065%3B Viruses - 6%3B Other Eukaryotes - 15 (source: NCBI BLink).; conf_rating=**; Dbxref=locus:2035389; locus_type=protein_coding
AT1G19940.1	chr1:006918323	0.0	C/6918323-6918652,6918742-6918908,6918989-6919127,6919214-6919648,6919721-6920004,6920076-6920268	AT1G19940.1 CDS AT1G19940 ID=AT1G19940.1; Parent=AT1G19940; Name=AT1G19940.1; Note=glycosyl hydrolase 9B5; conf_class=1; symbol=GH9B5; Alias=AtGH9B5, glycosyl hydrolase 9B5; full_name=glycosyl hydrolase 9B5; computational_description=glycosyl hydrolase 9B5 (GH9B5)%3B FUNCTIONS IN: hydrolase activity%2C hydrolyzing O-glycosyl compounds%2C catalytic activity%3B INVOLVED IN: carbohydrate metabolic process%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 18 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341)%2C Glycoside hydrolase%2C family 9%2C active site (InterPro:IPR018221)%2C Six-hairpin glycosidase-like (InterPro:IPR008928)%2C Glycoside hydrolase%2C family 9 (InterPro:IPR001701)%3B BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9B7 (TAIR:AT1G75680.1)%3B Has 1847 Blast hits to 1835 proteins in 264 species: Archae - 2%3B Bacteria - 685%3B Metazoa - 182%3B Fungi - 17%3B Plants - 919%3B Viruses - 0%3B Other Eukaryotes - 42 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12218065, PMID:15170254, PMID:15235117, PMID:15980264, PMID:16553896, PMID:16545809, PMID:17687051, PMID:18480120, PMID:18775970, locus:2035384; locus_type=protein_coding
AT1G19940.2	chr1:006918323	0.0	C/6918323-6918652,6918742-6918908,6918989-6919127,6919214-6919648,6919721-6920004,6920076-6920268	AT1G19940.2 CDS AT1G19940 ID=AT1G19940.2; Parent=AT1G19940; Name=AT1G19940.2; Note=glycosyl hydrolase 9B5; symbol=GH9B5; Alias=AtGH9B5, glycosyl hydrolase 9B5; full_name=glycosyl hydrolase 9B5; Dbxref=PMID:12218065, PMID:15170254, PMID:15235117, PMID:15980264, PMID:16553896, PMID:16545809, PMID:17687051, PMID:18480120, PMID:18775970, locus:2035384; computational_description=glycosyl hydrolase 9B5 (GH9B5)%3B FUNCTIONS IN: hydrolase activity%2C hydrolyzing O-glycosyl compounds%2C catalytic activity%3B INVOLVED IN: carbohydrate metabolic process%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 18 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341)%2C Glycoside hydrolase%2C family 9%2C active site (InterPro:IPR018221)%2C Six-hairpin glycosidase-like (InterPro:IPR008928)%2C Glycoside hydrolase%2C family 9 (InterPro:IPR001701)%3B BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9B7 (TAIR:AT1G75680.1)%3B Has 1847 Blast hits to 1835 proteins in 264 species: Archae - 2%3B Bacteria - 685%3B Metazoa - 182%3B Fungi - 17%3B Plants - 919%3B Viruses - 0%3B Other Eukaryotes - 42 (source: NCBI BLink).; locus_type=protein_coding
AT1G19940.3	chr1:006918700	0.0	C/6918700-6918908,6918989-6919127,6919214-6919648,6919721-6920004,6920076-6920268	AT1G19940.3 CDS AT1G19940 ID=AT1G19940.3; Parent=AT1G19940; Name=AT1G19940.3; Note=glycosyl hydrolase 9B5; symbol=GH9B5; Alias=AtGH9B5, glycosyl hydrolase 9B5; full_name=glycosyl hydrolase 9B5; computational_description=glycosyl hydrolase 9B5 (GH9B5)%3B FUNCTIONS IN: hydrolase activity%2C hydrolyzing O-glycosyl compounds%2C catalytic activity%3B INVOLVED IN: carbohydrate metabolic process%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 18 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341)%2C Glycoside hydrolase%2C family 9%2C active site (InterPro:IPR018221)%2C Six-hairpin glycosidase-like (InterPro:IPR008928)%2C Glycoside hydrolase%2C family 9 (InterPro:IPR001701)%3B BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9B7 (TAIR:AT1G75680.1)%3B Has 1847 Blast hits to 1835 proteins in 264 species: Archae - 2%3B Bacteria - 685%3B Metazoa - 182%3B Fungi - 17%3B Plants - 919%3B Viruses - 0%3B Other Eukaryotes - 42 (source: NCBI BLink).; Dbxref=PMID:12218065, PMID:15170254, PMID:15235117, PMID:15980264, PMID:16553896, PMID:16545809, PMID:17687051, PMID:18480120, PMID:18775970, locus:2035384; locus_type=protein_coding
AT1TE22370	chr1:006923174	0.0	W/6923174-6923809	AT1TE22370 transposable_element AT1TE22370 ID=AT1TE22370; Name=AT1TE22370; Alias=ATREP10B
AT1G19950.1	chr1:006925043	0.0	W/6925043-6925074,6925165-6925263,6925361-6925417,6925507-6925570,6925676-6925882,6926039-6926527	AT1G19950.1 CDS AT1G19950 ID=AT1G19950.1; Parent=AT1G19950; Name=AT1G19950.1; Note=HVA22-like protein H (ATHVA22H); conf_class=1; symbol=HVA22H; full_name=HVA22-like protein H (ATHVA22H); computational_description=HVA22-like protein H (ATHVA22H) (HVA22H)%3B CONTAINS InterPro DOMAIN/s: TB2/DP1/HVA22 related protein (InterPro:IPR004345)%3B BEST Arabidopsis thaliana protein match is: Abscisic acid-responsive (TB2/DP1%2C HVA22) family protein (TAIR:AT5G42560.1)%3B Has 10528 Blast hits to 8347 proteins in 778 species: Archae - 22%3B Bacteria - 1518%3B Metazoa - 4092%3B Fungi - 1457%3B Plants - 1639%3B Viruses - 302%3B Other Eukaryotes - 1498 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:20736450, locus:2198631; locus_type=protein_coding
AT1G19960.1	chr1:006928083	0.0	W/6928083-6928277	AT1G19960.1 CDS AT1G19960 ID=AT1G19960.1; Parent=AT1G19960; Name=AT1G19960.1; Note=transcription factor; conf_class=1; computational_description=BEST Arabidopsis thaliana protein match is: transmembrane receptors (TAIR:AT2G32140.1)%3B Has 41 Blast hits to 41 proteins in 17 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 23%3B Fungi - 0%3B Plants - 11%3B Viruses - 0%3B Other Eukaryotes - 5 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:17061125, PMID:17496105, PMID:18772308, PMID:23148892, locus:2198616; locus_type=protein_coding
AT1G19968.1	chr1:006930261	0.0	W/6930261-6930985	AT1G19968.1 ncRNA AT1G19968 ID=AT1G19968.1; Parent=AT1G19968; Name=AT1G19968.1; index=1; Dbxref=locus:4515102551; Note=other_RNA; locus_type=other_rna
AT1G19970.1	chr1:006931194	0.0	C/6931194-6931242,6931341-6931465,6931545-6931625,6931719-6931859,6932069-6932268,6932375-6932597	AT1G19970.1 CDS AT1G19970 ID=AT1G19970.1; Parent=AT1G19970; Name=AT1G19970.1; Note=ER lumen protein retaining receptor family protein; conf_class=2; computational_description=ER lumen protein retaining receptor family protein%3B FUNCTIONS IN: ER retention sequence binding%2C receptor activity%3B INVOLVED IN: protein retention in ER lumen%2C protein transport%3B LOCATED IN: integral to membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: ER lumen protein retaining receptor (InterPro:IPR000133)%3B BEST Arabidopsis thaliana protein match is: ER lumen protein retaining receptor family protein (TAIR:AT1G75760.1)%3B Has 893 Blast hits to 892 proteins in 227 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 316%3B Fungi - 180%3B Plants - 232%3B Viruses - 0%3B Other Eukaryotes - 165 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16607029, PMID:18775970, locus:2198601; locus_type=protein_coding
AT1G19970.2	chr1:006931476	0.0	C/6931476-6931625,6931719-6931859,6932069-6932268,6932375-6932597	AT1G19970.2 CDS AT1G19970 ID=AT1G19970.2; Parent=AT1G19970; Name=AT1G19970.2; Note=ER lumen protein retaining receptor family protein; computational_description=ER lumen protein retaining receptor family protein%3B FUNCTIONS IN: ER retention sequence binding%2C receptor activity%3B INVOLVED IN: protein retention in ER lumen%2C protein transport%3B LOCATED IN: integral to membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: ER lumen protein retaining receptor (InterPro:IPR000133)%3B BEST Arabidopsis thaliana protein match is: ER lumen protein retaining receptor family protein (TAIR:AT1G75760.1)%3B Has 893 Blast hits to 892 proteins in 227 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 316%3B Fungi - 180%3B Plants - 232%3B Viruses - 0%3B Other Eukaryotes - 165 (source: NCBI BLink).; Dbxref=PMID:16607029, PMID:18775970, locus:2198601; locus_type=protein_coding
AT1G19980.1	chr1:006933162	0.0	W/6933162-6933365,6933489-6933600,6933696-6933760,6933853-6934371,6934515-6934643	AT1G19980.1 CDS AT1G19980 ID=AT1G19980.1; Parent=AT1G19980; Name=AT1G19980.1; Note=cytomatrix protein-like protein; conf_class=2; computational_description=cytomatrix protein-related%3B Has 8598 Blast hits to 6353 proteins in 629 species: Archae - 108%3B Bacteria - 984%3B Metazoa - 3794%3B Fungi - 795%3B Plants - 240%3B Viruses - 29%3B Other Eukaryotes - 2648 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, locus:2198586; locus_type=protein_coding
AT1G19990.1	chr1:006935327	0.0	W/6935327-6935611,6935718-6935813,6935904-6935974,6936362-6936665	AT1G19990.1 CDS AT1G19990 ID=AT1G19990.1; Parent=AT1G19990; Name=AT1G19990.1; Note=nucleolin; conf_class=2; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: cultured cell%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11600.1)%3B Has 11256 Blast hits to 7192 proteins in 541 species: Archae - 6%3B Bacteria - 629%3B Metazoa - 4714%3B Fungi - 936%3B Plants - 545%3B Viruses - 34%3B Other Eukaryotes - 4392 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15272084, PMID:20032078, locus:2198571; locus_type=protein_coding
AT1G20000.1	chr1:006936898	0.0	C/6936898-6937420,6937575-6937666	AT1G20000.1 CDS AT1G20000 ID=AT1G20000.1; Parent=AT1G20000; Name=AT1G20000.1; Note=TBP-associated factor 11B; curator_summary=Encodes TAF11b%2C a putative TBP-associated factor (TBP: TATA binding protein).; conf_class=9; symbol=TAF11b; full_name=TBP-associated factor 11B; computational_description=TBP-associated factor 11B (TAF11b)%3B FUNCTIONS IN: RNA polymerase II transcription factor activity%2C transcription initiation factor activity%2C DNA binding%3B INVOLVED IN: transcription initiation from RNA polymerase II promoter%2C transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: root%2C inflorescence%2C leaf%3B CONTAINS InterPro DOMAIN/s: TAFII28-like protein (InterPro:IPR006809)%2C Histone-fold (InterPro:IPR009072)%3B BEST Arabidopsis thaliana protein match is: TBP-associated factor 11 (TAIR:AT4G20280.1)%3B Has 325 Blast hits to 325 proteins in 122 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 187%3B Fungi - 66%3B Plants - 51%3B Viruses - 0%3B Other Eukaryotes - 21 (source: NCBI BLink).; conf_rating=*; Dbxref=PMID:14576160, PMID:17340043, PMID:15527982, locus:2198671; locus_type=protein_coding
AT1G20010.1	chr1:006938033	0.0	C/6938033-6938715,6938795-6939064,6940085-6940481	AT1G20010.1 CDS AT1G20010 ID=AT1G20010.1; Parent=AT1G20010; Name=AT1G20010.1; Note=tubulin beta-5 chain; curator_summary=beta tubulin; conf_class=2; symbol=TUB5; full_name=tubulin beta-5 chain; computational_description=tubulin beta-5 chain (TUB5)%3B FUNCTIONS IN: structural constituent of cytoskeleton%3B INVOLVED IN: microtubule-based process%3B LOCATED IN: tubulin complex%2C cell wall%2C plasma membrane%2C chloroplast%2C membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Beta tubulin (InterPro:IPR002453)%2C Tubulin (InterPro:IPR000217)%2C Tubulin/FtsZ%2C GTPase domain (InterPro:IPR003008)%2C Tubulin/FtsZ%2C N-terminal (InterPro:IPR019746)%2C Tubulin/FtsZ%2C C-terminal (InterPro:IPR008280)%2C Beta tubulin%2C autoregulation binding site (InterPro:IPR013838)%2C Tubulin%2C conserved site (InterPro:IPR017975)%2C Tubulin/FtsZ%2C 2-layer sandwich domain (InterPro:IPR018316)%3B BEST Arabidopsis thaliana protein match is: tubulin beta-1 chain (TAIR:AT1G75780.1)%3B Has 23676 Blast hits to 23579 proteins in 4895 species: Archae - 37%3B Bacteria - 47%3B Metazoa - 4468%3B Fungi - 14216%3B Plants - 1551%3B Viruses - 0%3B Other Eukaryotes - 3357 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:1498609, PMID:12231943, PMID:12662315, PMID:15078335, PMID:16258015, PMID:16377752, PMID:16615871, PMID:16920880, PMID:16998088, PMID:17360694, PMID:18390592, PMID:18480120, PMID:18650403, PMID:20736450, PMID:20675571, locus:2198661; locus_type=protein_coding
AT1G20015.1	chr1:006941285	0.0	W/6941285-6941373	AT1G20015.1 snoRNA AT1G20015 ID=AT1G20015.1; Parent=AT1G20015; computational_description=snoRNA; Dbxref=PMID:22820990, locus:3692271; Name=AT1G20015.1; Note=snoRNA; locus_type=small_nucleolar_rna
AT1G05517.1	chr1:006941873	0.0	C/6941873-6942155	AT1G05517.1 lnc_RNA AT1G05517 ID=AT1G05517.1; Parent=AT1G05517; Name=AT1G05517.1; locus_type=long_noncoding_rna
AT1G20020.1	chr1:006942851	0.0	W/6942851-6942955,6943228-6943483,6943582-6943715,6943791-6943869,6943955-6944046,6944164-6944241,6944319-6944381,6944479-6944713,6944801-6944868	AT1G20020.1 CDS AT1G20020 ID=AT1G20020.1; Parent=AT1G20020; Name=AT1G20020.1; Note=ferredoxin-NADP[+]-oxidoreductase 2; curator_summary=Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase. It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the stroma; conf_class=2; symbol=FNR2; Alias=ATLFNR2, LEAF FNR 2, LFNR2, leaf-type chloroplast-targeted FNR 2; full_name=ferredoxin-NADP(+)-oxidoreductase 2; computational_description=ferredoxin-NADP(+)-oxidoreductase 2 (FNR2)%3B FUNCTIONS IN: oxidoreductase activity%2C poly(U) RNA binding%2C NADPH dehydrogenase activity%3B INVOLVED IN: oxidation reduction%2C defense response to fungus%2C incompatible interaction%2C defense response to bacterium%3B LOCATED IN: thylakoid%2C chloroplast thylakoid membrane%2C apoplast%2C chloroplast stroma%2C chloroplast%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433)%2C Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927)%2C Oxidoreductase%2C FAD-binding domain (InterPro:IPR008333)%2C Riboflavin synthase-like beta-barrel (InterPro:IPR017938)%2C Ferredoxin Reductase (InterPro:IPR015701)%2C Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709)%2C Ferredoxin--NADP reductase (InterPro:IPR012146)%3B BEST Arabidopsis thaliana protein match is: ferredoxin-NADP(+)-oxidoreductase 1 (TAIR:AT5G66190.1)%3B Has 6774 Blast hits to 6774 proteins in 1708 species: Archae - 20%3B Bacteria - 3604%3B Metazoa - 802%3B Fungi - 759%3B Plants - 616%3B Viruses - 0%3B Other Eukaryotes - 973 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:14729914, PMID:15333754, PMID:15322131, PMID:16648217, PMID:17056707, PMID:17028151, PMID:17511964, PMID:17705847, PMID:17828791, PMID:18433503, PMID:18650403, PMID:18633119, PMID:19054362, PMID:19857612, PMID:20392519, PMID:20934402, PMID:22300243, PMID:22805436, PMID:24043709, PMID:24064926, locus:2198651; locus_type=protein_coding
AT1G20020.3	chr1:006942851	0.0	W/6942851-6942955,6943228-6943486,6943585-6943715,6943791-6943869,6943955-6944046,6944164-6944241,6944319-6944381,6944479-6944713,6944801-6944868	AT1G20020.3 CDS AT1G20020 ID=AT1G20020.3; Parent=AT1G20020; Name=AT1G20020.3; Note=ferredoxin-NADP[+]-oxidoreductase 2; curator_summary=Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase. It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the stroma; conf_class=2; symbol=FNR2; Alias=ATLFNR2, LEAF FNR 2, LFNR2, leaf-type chloroplast-targeted FNR 2; full_name=ferredoxin-NADP(+)-oxidoreductase 2; computational_description=ferredoxin-NADP(+)-oxidoreductase 2 (FNR2)%3B FUNCTIONS IN: oxidoreductase activity%2C poly(U) RNA binding%2C NADPH dehydrogenase activity%3B INVOLVED IN: oxidation reduction%2C defense response to fungus%2C incompatible interaction%2C defense response to bacterium%3B LOCATED IN: thylakoid%2C chloroplast thylakoid membrane%2C apoplast%2C chloroplast stroma%2C chloroplast%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433)%2C Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927)%2C Oxidoreductase%2C FAD-binding domain (InterPro:IPR008333)%2C Riboflavin synthase-like beta-barrel (InterPro:IPR017938)%2C Ferredoxin Reductase (InterPro:IPR015701)%2C Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709)%2C Ferredoxin--NADP reductase (InterPro:IPR012146)%3B BEST Arabidopsis thaliana protein match is: ferredoxin-NADP(+)-oxidoreductase 1 (TAIR:AT5G66190.1)%3B Has 6774 Blast hits to 6774 proteins in 1708 species: Archae - 20%3B Bacteria - 3604%3B Metazoa - 802%3B Fungi - 759%3B Plants - 616%3B Viruses - 0%3B Other Eukaryotes - 973 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:14729914, PMID:15333754, PMID:15322131, PMID:16648217, PMID:17056707, PMID:17028151, PMID:17511964, PMID:17705847, PMID:17828791, PMID:18433503, PMID:18650403, PMID:18633119, PMID:19054362, PMID:19857612, PMID:20392519, PMID:20934402, PMID:22300243, PMID:22805436, PMID:24043709, PMID:24064926, locus:2198651; locus_type=protein_coding
AT1G20020.2	chr1:006943465	0.0	W/6943465-6943483,6943582-6943715,6943791-6943869,6943955-6944046,6944164-6944241,6944319-6944381,6944479-6944713,6944801-6944868	AT1G20020.2 CDS AT1G20020 ID=AT1G20020.2; Parent=AT1G20020; Name=AT1G20020.2; Note=ferredoxin-NADP[+]-oxidoreductase 2; curator_summary=Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase. It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the stroma; conf_class=2; symbol=FNR2; Alias=ATLFNR2, LEAF FNR 2, LFNR2, leaf-type chloroplast-targeted FNR 2; full_name=ferredoxin-NADP(+)-oxidoreductase 2; computational_description=ferredoxin-NADP(+)-oxidoreductase 2 (FNR2)%3B FUNCTIONS IN: oxidoreductase activity%2C poly(U) RNA binding%2C NADPH dehydrogenase activity%3B INVOLVED IN: oxidation reduction%2C defense response to fungus%2C incompatible interaction%2C defense response to bacterium%3B LOCATED IN: thylakoid%2C chloroplast thylakoid membrane%2C apoplast%2C chloroplast stroma%2C chloroplast%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433)%2C Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927)%2C Oxidoreductase%2C FAD-binding domain (InterPro:IPR008333)%2C Riboflavin synthase-like beta-barrel (InterPro:IPR017938)%2C Ferredoxin Reductase (InterPro:IPR015701)%2C Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709)%2C Ferredoxin--NADP reductase (InterPro:IPR012146)%3B BEST Arabidopsis thaliana protein match is: ferredoxin-NADP(+)-oxidoreductase 1 (TAIR:AT5G66190.1)%3B Has 6774 Blast hits to 6774 proteins in 1708 species: Archae - 20%3B Bacteria - 3604%3B Metazoa - 802%3B Fungi - 759%3B Plants - 616%3B Viruses - 0%3B Other Eukaryotes - 973 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:14729914, PMID:15333754, PMID:15322131, PMID:16648217, PMID:17056707, PMID:17028151, PMID:17511964, PMID:17705847, PMID:17828791, PMID:18433503, PMID:18650403, PMID:18633119, PMID:19054362, PMID:19857612, PMID:20392519, PMID:20934402, PMID:22300243, PMID:22805436, PMID:24043709, PMID:24064926, locus:2198651; locus_type=protein_coding
AT1G20030.2	chr1:006945725	0.0	W/6945725-6945770,6945845-6946547,6946816-6947017	AT1G20030.2 CDS AT1G20030 ID=AT1G20030.2; Parent=AT1G20030; Name=AT1G20030.2; Note=Pathogenesis-related thaumatin superfamily protein; conf_class=2; computational_description=Pathogenesis-related thaumatin superfamily protein%3B CONTAINS InterPro DOMAIN/s: Thaumatin%2C conserved site (InterPro:IPR017949)%2C Thaumatin%2C pathogenesis-related (InterPro:IPR001938)%3B BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT1G75800.1)%3B Has 1614 Blast hits to 1596 proteins in 182 species: Archae - 0%3B Bacteria - 45%3B Metazoa - 56%3B Fungi - 77%3B Plants - 1416%3B Viruses - 2%3B Other Eukaryotes - 18 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12068095, PMID:12805588, PMID:15086800, PMID:15375205, PMID:17351116, PMID:17565617, PMID:18671872, locus:2198641; locus_type=protein_coding
AT1G20030.1	chr1:006945850	0.0	W/6945850-6946547,6946816-6947017	AT1G20030.1 CDS AT1G20030 ID=AT1G20030.1; Parent=AT1G20030; Name=AT1G20030.1; Note=Pathogenesis-related thaumatin superfamily protein; conf_class=1; computational_description=Pathogenesis-related thaumatin superfamily protein%3B CONTAINS InterPro DOMAIN/s: Thaumatin%2C conserved site (InterPro:IPR017949)%2C Thaumatin%2C pathogenesis-related (InterPro:IPR001938)%3B BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT1G75800.1)%3B Has 1614 Blast hits to 1596 proteins in 182 species: Archae - 0%3B Bacteria - 45%3B Metazoa - 56%3B Fungi - 77%3B Plants - 1416%3B Viruses - 2%3B Other Eukaryotes - 18 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12068095, PMID:12805588, PMID:15086800, PMID:15375205, PMID:17351116, PMID:17565617, PMID:18671872, locus:2198641; locus_type=protein_coding
AT1TE22450	chr1:006947207	0.0	C/6947207-6947556	AT1TE22450 transposable_element AT1TE22450 ID=AT1TE22450; Name=AT1TE22450; Alias=ATREP3
AT1G20040.1	chr1:006948860	0.0	C/6948860-6948943	AT1G20040.1 tRNA AT1G20040 ID=AT1G20040.1; Parent=AT1G20040; Note=tRNA-Leu; computational_description=tRNA-Leu (anticodon: CAA); Dbxref=PMID:8980477, PMID:23066098, PMID:8980477, locus:3692268; Name=AT1G20040.1; locus_type=pre_trna
AT1G20050.1	chr1:006949160	0.0	W/6949160-6949301,6949440-6949580,6949667-6949775,6949856-6950135	AT1G20050.1 CDS AT1G20050 ID=AT1G20050.1; Parent=AT1G20050; Name=AT1G20050.1; Note=C-8%2C7 sterol isomerase; curator_summary=C-8 sterol isomerase that also plays a role in miRNA function.; conf_class=2; symbol=HYD1; Alias=MAD4, miRNA action deficient 4; full_name=HYDRA1; computational_description=HYDRA1 (HYD1)%3B FUNCTIONS IN: C-8 sterol isomerase activity%3B INVOLVED IN: sterol biosynthetic process%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Emopamil-binding (InterPro:IPR007905)%3B Has 377 Blast hits to 377 proteins in 112 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 119%3B Fungi - 175%3B Plants - 59%3B Viruses - 0%3B Other Eukaryotes - 24 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9862498, PMID:9334289, PMID:12100483, PMID:12034894, PMID:15078327, PMID:15138822, PMID:20736450, PMID:20808926, PMID:22247288, PMID:23551583, locus:2198626; locus_type=protein_coding
AT1G20060.10	chr1:006950723	0.0	C/6950723-6950818,6950917-6950998,6951086-6951213,6951334-6951424,6951550-6951689,6951778-6951864,6951955-6952014,6952132-6952224,6952309-6952398,6952479-6952571,6952827-6953012,6953146-6953300,6953470-6953515,6953632-6953734,6953818-6953900,6953998-6954048,6954162-6954224,6954327-6954392,6954675-6954810,6955008-6955102,6955205-6955331,6955479-6955678,6955769-6956293	AT1G20060.10 CDS AT1G20060 ID=AT1G20060.10; Parent=AT1G20060; Name=AT1G20060.10; Note=ATP binding microtubule motor family protein; computational_description=ATP binding microtubule motor family protein%3B FUNCTIONS IN: microtubule motor activity%2C ATP binding%3B INVOLVED IN: microtubule-based movement%3B LOCATED IN: chloroplast%3B CONTAINS InterPro DOMAIN/s: Kinesin%2C motor region%2C conserved site (InterPro:IPR019821)%2C Kinesin%2C motor domain (InterPro:IPR001752)%3B BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G60930.1)%3B Has 10625 Blast hits to 10139 proteins in 419 species: Archae - 2%3B Bacteria - 255%3B Metazoa - 4769%3B Fungi - 1373%3B Plants - 1690%3B Viruses - 3%3B Other Eukaryotes - 2533 (source: NCBI BLink).; Dbxref=PMID:14576160, PMID:20736450, locus:2198611; locus_type=protein_coding
AT1G20060.1	chr1:006950723	0.0	C/6950723-6950818,6950917-6950998,6951086-6951213,6951334-6951424,6951550-6951680,6951778-6951864,6951955-6952014,6952132-6952224,6952309-6952398,6952479-6952571,6952656-6952745,6952827-6953012,6953146-6953300,6953470-6953515,6953632-6953734,6953818-6953900,6953998-6954048,6954157-6954321,6954675-6954810,6955008-6955102,6955205-6955331,6955479-6955678,6955769-6956293	AT1G20060.1 CDS AT1G20060 ID=AT1G20060.1; Parent=AT1G20060; Name=AT1G20060.1; Note=ATP binding microtubule motor family protein; conf_class=6; computational_description=ATP binding microtubule motor family protein%3B FUNCTIONS IN: microtubule motor activity%2C ATP binding%3B INVOLVED IN: microtubule-based movement%3B LOCATED IN: chloroplast%3B CONTAINS InterPro DOMAIN/s: Kinesin%2C motor region%2C conserved site (InterPro:IPR019821)%2C Kinesin%2C motor domain (InterPro:IPR001752)%3B BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G60930.1)%3B Has 10625 Blast hits to 10139 proteins in 419 species: Archae - 2%3B Bacteria - 255%3B Metazoa - 4769%3B Fungi - 1373%3B Plants - 1690%3B Viruses - 3%3B Other Eukaryotes - 2533 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:14576160, PMID:20736450, locus:2198611; locus_type=protein_coding
AT1G20060.2	chr1:006950723	0.0	C/6950723-6950818,6950917-6950998,6951086-6951213,6951334-6951424,6951550-6951689,6951778-6951864,6951955-6952014,6952132-6952224,6952306-6952398,6952479-6952571,6952653-6952745,6952827-6953012,6953146-6953300,6953470-6953515,6953632-6953734,6953818-6953900,6953998-6954048,6954162-6954224,6954327-6954392,6954675-6954810,6955008-6955102,6955205-6955331,6955479-6955678,6955769-6956293	AT1G20060.2 CDS AT1G20060 ID=AT1G20060.2; Parent=AT1G20060; Name=AT1G20060.2; Note=ATP binding microtubule motor family protein; computational_description=ATP binding microtubule motor family protein%3B FUNCTIONS IN: microtubule motor activity%2C ATP binding%3B INVOLVED IN: microtubule-based movement%3B LOCATED IN: chloroplast%3B CONTAINS InterPro DOMAIN/s: Kinesin%2C motor region%2C conserved site (InterPro:IPR019821)%2C Kinesin%2C motor domain (InterPro:IPR001752)%3B BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G60930.1)%3B Has 10625 Blast hits to 10139 proteins in 419 species: Archae - 2%3B Bacteria - 255%3B Metazoa - 4769%3B Fungi - 1373%3B Plants - 1690%3B Viruses - 3%3B Other Eukaryotes - 2533 (source: NCBI BLink).; Dbxref=PMID:14576160, PMID:20736450, locus:2198611; locus_type=protein_coding
AT1G20060.3	chr1:006950723	0.0	C/6950723-6950818,6950917-6950998,6951086-6951213,6951334-6951424,6951550-6951689,6951778-6951864,6951955-6952014,6952132-6952224,6952306-6952398,6952653-6952745,6952827-6953012,6953146-6953300,6953470-6953515,6953632-6953734,6953818-6953900,6953998-6954048,6954162-6954224,6954327-6954392,6954675-6954810,6955008-6955102,6955205-6955331,6955479-6955678,6955769-6956293	AT1G20060.3 CDS AT1G20060 ID=AT1G20060.3; Parent=AT1G20060; Name=AT1G20060.3; Note=ATP binding microtubule motor family protein; computational_description=ATP binding microtubule motor family protein%3B FUNCTIONS IN: microtubule motor activity%2C ATP binding%3B INVOLVED IN: microtubule-based movement%3B LOCATED IN: chloroplast%3B CONTAINS InterPro DOMAIN/s: Kinesin%2C motor region%2C conserved site (InterPro:IPR019821)%2C Kinesin%2C motor domain (InterPro:IPR001752)%3B BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G60930.1)%3B Has 10625 Blast hits to 10139 proteins in 419 species: Archae - 2%3B Bacteria - 255%3B Metazoa - 4769%3B Fungi - 1373%3B Plants - 1690%3B Viruses - 3%3B Other Eukaryotes - 2533 (source: NCBI BLink).; Dbxref=PMID:14576160, PMID:20736450, locus:2198611; locus_type=protein_coding
AT1G20060.4	chr1:006950723	0.0	C/6950723-6950818,6950917-6950998,6951086-6951213,6951334-6951424,6951550-6951680,6951778-6951864,6951955-6952014,6952132-6952224,6952309-6952398,6952479-6952571,6952656-6952745,6952827-6953012,6953146-6953300,6953470-6953515,6953632-6953734,6953818-6953900,6953998-6954048,6954162-6954224,6954327-6954392,6954675-6954810,6955008-6955102,6955205-6955331,6955479-6955678,6955769-6956293	AT1G20060.4 CDS AT1G20060 ID=AT1G20060.4; Parent=AT1G20060; Name=AT1G20060.4; Note=ATP binding microtubule motor family protein; computational_description=ATP binding microtubule motor family protein%3B FUNCTIONS IN: microtubule motor activity%2C ATP binding%3B INVOLVED IN: microtubule-based movement%3B LOCATED IN: chloroplast%3B CONTAINS InterPro DOMAIN/s: Kinesin%2C motor region%2C conserved site (InterPro:IPR019821)%2C Kinesin%2C motor domain (InterPro:IPR001752)%3B BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G60930.1)%3B Has 10625 Blast hits to 10139 proteins in 419 species: Archae - 2%3B Bacteria - 255%3B Metazoa - 4769%3B Fungi - 1373%3B Plants - 1690%3B Viruses - 3%3B Other Eukaryotes - 2533 (source: NCBI BLink).; Dbxref=PMID:14576160, PMID:20736450, locus:2198611; locus_type=protein_coding
AT1G20060.5	chr1:006950723	0.0	C/6950723-6950818,6950917-6950998,6951086-6951213,6951334-6951424,6951550-6951689,6951778-6951864,6951955-6952014,6952132-6952224,6952309-6952398,6952479-6952571,6952656-6952745,6952827-6953012,6953146-6953300,6953470-6953515,6953632-6953734,6953818-6953900,6953998-6954048,6954162-6954224,6954327-6954392,6954675-6954810,6955008-6955102,6955205-6955331,6955479-6955678,6955769-6956293	AT1G20060.5 CDS AT1G20060 ID=AT1G20060.5; Parent=AT1G20060; Name=AT1G20060.5; Note=ATP binding microtubule motor family protein; computational_description=ATP binding microtubule motor family protein%3B FUNCTIONS IN: microtubule motor activity%2C ATP binding%3B INVOLVED IN: microtubule-based movement%3B LOCATED IN: chloroplast%3B CONTAINS InterPro DOMAIN/s: Kinesin%2C motor region%2C conserved site (InterPro:IPR019821)%2C Kinesin%2C motor domain (InterPro:IPR001752)%3B BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G60930.1)%3B Has 10625 Blast hits to 10139 proteins in 419 species: Archae - 2%3B Bacteria - 255%3B Metazoa - 4769%3B Fungi - 1373%3B Plants - 1690%3B Viruses - 3%3B Other Eukaryotes - 2533 (source: NCBI BLink).; Dbxref=PMID:14576160, PMID:20736450, locus:2198611; locus_type=protein_coding
AT1G20060.6	chr1:006950723	0.0	C/6950723-6950818,6950917-6950998,6951086-6951213,6951334-6951424,6951550-6951689,6951778-6951864,6951955-6952014,6952132-6952224,6952306-6952398,6952479-6952571,6952656-6952745,6952827-6953012,6953146-6953300,6953470-6953515,6953632-6953734,6953818-6953900,6953998-6954048,6954162-6954224,6954327-6954392,6954675-6954810,6955008-6955102,6955205-6955331,6955479-6955678,6955769-6956293	AT1G20060.6 CDS AT1G20060 ID=AT1G20060.6; Parent=AT1G20060; Name=AT1G20060.6; Note=ATP binding microtubule motor family protein; computational_description=ATP binding microtubule motor family protein%3B FUNCTIONS IN: microtubule motor activity%2C ATP binding%3B INVOLVED IN: microtubule-based movement%3B LOCATED IN: chloroplast%3B CONTAINS InterPro DOMAIN/s: Kinesin%2C motor region%2C conserved site (InterPro:IPR019821)%2C Kinesin%2C motor domain (InterPro:IPR001752)%3B BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G60930.1)%3B Has 10625 Blast hits to 10139 proteins in 419 species: Archae - 2%3B Bacteria - 255%3B Metazoa - 4769%3B Fungi - 1373%3B Plants - 1690%3B Viruses - 3%3B Other Eukaryotes - 2533 (source: NCBI BLink).; Dbxref=PMID:14576160, PMID:20736450, locus:2198611; locus_type=protein_coding
AT1G20060.7	chr1:006950723	0.0	C/6950723-6950818,6950917-6950998,6951086-6951213,6951334-6951424,6951550-6951689,6951778-6951864,6951955-6952014,6952132-6952224,6952306-6952398,6952479-6952571,6952656-6952745,6952827-6953012,6953146-6953289,6953632-6953734,6953818-6953900,6953998-6954048,6954162-6954224,6954327-6954392,6954675-6954810,6955008-6955102,6955205-6955331,6955479-6955678,6955769-6956293	AT1G20060.7 CDS AT1G20060 ID=AT1G20060.7; Parent=AT1G20060; Name=AT1G20060.7; Note=ATP binding microtubule motor family protein; computational_description=ATP binding microtubule motor family protein%3B FUNCTIONS IN: microtubule motor activity%2C ATP binding%3B INVOLVED IN: microtubule-based movement%3B LOCATED IN: chloroplast%3B CONTAINS InterPro DOMAIN/s: Kinesin%2C motor region%2C conserved site (InterPro:IPR019821)%2C Kinesin%2C motor domain (InterPro:IPR001752)%3B BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G60930.1)%3B Has 10625 Blast hits to 10139 proteins in 419 species: Archae - 2%3B Bacteria - 255%3B Metazoa - 4769%3B Fungi - 1373%3B Plants - 1690%3B Viruses - 3%3B Other Eukaryotes - 2533 (source: NCBI BLink).; Dbxref=PMID:14576160, PMID:20736450, locus:2198611; locus_type=protein_coding
AT1G20060.8	chr1:006950723	0.0	C/6950723-6950818,6950917-6950998,6951086-6951213,6951334-6951424,6951550-6951680,6951778-6951864,6951955-6952014,6952132-6952224,6952306-6952398,6952479-6952571,6952656-6952745,6952827-6953012,6953146-6953300,6953470-6953515,6953632-6953734,6953818-6953900,6953998-6954048,6954162-6954224,6954327-6954392,6954675-6954810,6955008-6955102,6955205-6955331,6955479-6955678,6955769-6956293	AT1G20060.8 CDS AT1G20060 ID=AT1G20060.8; Parent=AT1G20060; Name=AT1G20060.8; Note=ATP binding microtubule motor family protein; computational_description=ATP binding microtubule motor family protein%3B FUNCTIONS IN: microtubule motor activity%2C ATP binding%3B INVOLVED IN: microtubule-based movement%3B LOCATED IN: chloroplast%3B CONTAINS InterPro DOMAIN/s: Kinesin%2C motor region%2C conserved site (InterPro:IPR019821)%2C Kinesin%2C motor domain (InterPro:IPR001752)%3B BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G60930.1)%3B Has 10625 Blast hits to 10139 proteins in 419 species: Archae - 2%3B Bacteria - 255%3B Metazoa - 4769%3B Fungi - 1373%3B Plants - 1690%3B Viruses - 3%3B Other Eukaryotes - 2533 (source: NCBI BLink).; Dbxref=PMID:14576160, PMID:20736450, locus:2198611; locus_type=protein_coding
AT1G20060.9	chr1:006950723	0.0	C/6950723-6950818,6950917-6950998,6951086-6951213,6951334-6951424,6951550-6951680,6951778-6951864,6951955-6952014,6952132-6952224,6952309-6952398,6952653-6952745,6952827-6953012,6953146-6953300,6953470-6953515,6953632-6953734,6953818-6953900,6953998-6954048,6954162-6954224,6954327-6954392,6954675-6954810,6955008-6955102,6955205-6955331,6955479-6955678,6955769-6956293	AT1G20060.9 CDS AT1G20060 ID=AT1G20060.9; Parent=AT1G20060; Name=AT1G20060.9; Note=ATP binding microtubule motor family protein; computational_description=ATP binding microtubule motor family protein%3B FUNCTIONS IN: microtubule motor activity%2C ATP binding%3B INVOLVED IN: microtubule-based movement%3B LOCATED IN: chloroplast%3B CONTAINS InterPro DOMAIN/s: Kinesin%2C motor region%2C conserved site (InterPro:IPR019821)%2C Kinesin%2C motor domain (InterPro:IPR001752)%3B BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G60930.1)%3B Has 10625 Blast hits to 10139 proteins in 419 species: Archae - 2%3B Bacteria - 255%3B Metazoa - 4769%3B Fungi - 1373%3B Plants - 1690%3B Viruses - 3%3B Other Eukaryotes - 2533 (source: NCBI BLink).; Dbxref=PMID:14576160, PMID:20736450, locus:2198611; locus_type=protein_coding
AT1TE22460	chr1:006951418	0.0	C/6951418-6951538	AT1TE22460 transposable_element AT1TE22460 ID=AT1TE22460; Name=AT1TE22460; Alias=ATDNAI27T9A
AT1G20065.1	chr1:006956973	0.0	W/6956973-6957090,6957191-6957231,6957529-6957561	AT1G20065.1 CDS AT1G20065 ID=AT1G20065.1; Parent=AT1G20065; Name=AT1G20065.1; Note=DNA-directed RNA polymerase I subunit RPA12-like protein; conf_class=1; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B BEST Arabidopsis thaliana protein match is: TFIIB zinc-binding protein (TAIR:AT3G25940.1).; conf_rating=*****; Dbxref=locus:4010713455; locus_type=protein_coding
AT1G20065.2	chr1:006956973	0.0	W/6956973-6957090,6957191-6957348	AT1G20065.2 CDS AT1G20065 ID=AT1G20065.2; Parent=AT1G20065; Name=AT1G20065.2; Note=DNA-directed RNA polymerase I subunit RPA12-like protein; conf_class=3; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B BEST Arabidopsis thaliana protein match is: TFIIB zinc-binding protein (TAIR:AT3G25940.1).; conf_rating=****; Dbxref=locus:4010713455; locus_type=protein_coding
AT1G20065.3	chr1:006956973	0.0	W/6956973-6957090,6957191-6957231,6957529-6957561	AT1G20065.3 CDS AT1G20065 ID=AT1G20065.3; Parent=AT1G20065; Name=AT1G20065.3; Note=DNA-directed RNA polymerase I subunit RPA12-like protein; Dbxref=locus:4010713455; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B BEST Arabidopsis thaliana protein match is: TFIIB zinc-binding protein (TAIR:AT3G25940.1).; locus_type=protein_coding
AT1G20065.4	chr1:006956973	0.0	W/6956973-6957090,6957191-6957231,6957529-6957561	AT1G20065.4 CDS AT1G20065 ID=AT1G20065.4; Parent=AT1G20065; Name=AT1G20065.4; Note=DNA-directed RNA polymerase I subunit RPA12-like protein; Dbxref=locus:4010713455; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B BEST Arabidopsis thaliana protein match is: TFIIB zinc-binding protein (TAIR:AT3G25940.1).; locus_type=protein_coding
AT1G20065.5	chr1:006956973	0.0	W/6956973-6957090,6957191-6957231,6957529-6957561	AT1G20065.5 CDS AT1G20065 ID=AT1G20065.5; Parent=AT1G20065; Name=AT1G20065.5; Note=DNA-directed RNA polymerase I subunit RPA12-like protein; Dbxref=locus:4010713455; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B BEST Arabidopsis thaliana protein match is: TFIIB zinc-binding protein (TAIR:AT3G25940.1).; locus_type=protein_coding
AT1G05523.1	chr1:006957968	0.0	W/6957968-6959124	AT1G05523.1 antisense_lncRNA AT1G05523 ID=AT1G05523.1; Parent=AT1G05523; Name=AT1G05523.1; description=Natural antisense transcript overlaps with AT1G20070; Note=Natural antisense transcript overlaps with AT1G20070; locus_type=antisense_long_noncoding_rna
AT1G20070.1	chr1:006958244	0.0	C/6958244-6958825	AT1G20070.1 CDS AT1G20070 ID=AT1G20070.1; Parent=AT1G20070; Name=AT1G20070.1; Note=hypothetical protein; conf_class=1; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 11 growth stages%3B Has 26 Blast hits to 26 proteins in 9 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 2%3B Plants - 24%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14576160, PMID:16792696, PMID:18650403, locus:2198596; locus_type=protein_coding
AT1G05527.1	chr1:006959160	0.0	W/6959160-6959605	AT1G05527.1 lnc_RNA AT1G05527 ID=AT1G05527.1; Parent=AT1G05527; Name=AT1G05527.1; locus_type=long_noncoding_rna
AT1G05533.1	chr1:006961365	0.0	W/6961365-6961574	AT1G05533.1 lnc_RNA AT1G05533 ID=AT1G05533.1; Parent=AT1G05533; Name=AT1G05533.1; locus_type=long_noncoding_rna
AT1G20080.1	chr1:006962236	0.0	W/6962236-6962346,6962533-6962631,6962717-6962767,6962869-6962992,6963086-6963204,6963278-6963379,6963460-6963534,6963639-6963715,6963802-6964048,6964127-6964477,6964562-6964687,6964781-6964912	AT1G20080.1 CDS AT1G20080 ID=AT1G20080.1; Parent=AT1G20080; Name=AT1G20080.1; Note=Calcium-dependent lipid-binding (CaLB domain) family protein; curator_summary=Encodes a synaptotagmin localized on the Golgi apparatus and that regulates protein secretion via the unconventional protein transport from the cytosol to the extracellular matrix in plant cells.; conf_class=1; symbol=SYTB; computational_description=SYTB%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 6 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029)%2C C2 calcium/lipid-binding domain%2C CaLB (InterPro:IPR008973)%2C C2 region (InterPro:IPR020477)%2C C2 calcium-dependent membrane targeting (InterPro:IPR000008)%3B BEST Arabidopsis thaliana protein match is: synaptotagmin A (TAIR:AT2G20990.1)%3B Has 7272 Blast hits to 5651 proteins in 270 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 4705%3B Fungi - 871%3B Plants - 1207%3B Viruses - 0%3B Other Eukaryotes - 489 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11543631, PMID:18775970, PMID:20498364, PMID:20736450, PMID:22140429, locus:2198581; locus_type=protein_coding
AT1G20080.2	chr1:006962236	0.0	W/6962236-6962346,6962533-6962631,6962717-6962767,6962869-6962992,6963086-6963204,6963278-6963379,6963460-6963534,6963639-6963715,6963802-6964048,6964127-6964477,6964562-6964687,6964781-6964912	AT1G20080.2 CDS AT1G20080 ID=AT1G20080.2; Parent=AT1G20080; Name=AT1G20080.2; Note=Calcium-dependent lipid-binding (CaLB domain) family protein; symbol=SYTB; Dbxref=PMID:11543631, PMID:18775970, PMID:20498364, PMID:20736450, PMID:22140429, locus:2198581; curator_summary=Encodes a synaptotagmin localized on the Golgi apparatus and that regulates protein secretion via the unconventional protein transport from the cytosol to the extracellular matrix in plant cells.; computational_description=SYTB%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 6 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029)%2C C2 calcium/lipid-binding domain%2C CaLB (InterPro:IPR008973)%2C C2 region (InterPro:IPR020477)%2C C2 calcium-dependent membrane targeting (InterPro:IPR000008)%3B BEST Arabidopsis thaliana protein match is: synaptotagmin A (TAIR:AT2G20990.1)%3B Has 7272 Blast hits to 5651 proteins in 270 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 4705%3B Fungi - 871%3B Plants - 1207%3B Viruses - 0%3B Other Eukaryotes - 489 (source: NCBI BLink).; locus_type=protein_coding
AT1G20080.3	chr1:006962236	0.0	W/6962236-6962346,6962533-6962631,6962717-6962767,6962869-6962992,6963086-6963204,6963278-6963379,6963460-6963534,6963639-6963715,6963802-6964048,6964127-6964477,6964562-6964687,6964781-6964912	AT1G20080.3 CDS AT1G20080 ID=AT1G20080.3; Parent=AT1G20080; Name=AT1G20080.3; Note=Calcium-dependent lipid-binding (CaLB domain) family protein; symbol=SYTB; Dbxref=PMID:11543631, PMID:18775970, PMID:20498364, PMID:20736450, PMID:22140429, locus:2198581; curator_summary=Encodes a synaptotagmin localized on the Golgi apparatus and that regulates protein secretion via the unconventional protein transport from the cytosol to the extracellular matrix in plant cells.; computational_description=SYTB%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 6 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029)%2C C2 calcium/lipid-binding domain%2C CaLB (InterPro:IPR008973)%2C C2 region (InterPro:IPR020477)%2C C2 calcium-dependent membrane targeting (InterPro:IPR000008)%3B BEST Arabidopsis thaliana protein match is: synaptotagmin A (TAIR:AT2G20990.1)%3B Has 7272 Blast hits to 5651 proteins in 270 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 4705%3B Fungi - 871%3B Plants - 1207%3B Viruses - 0%3B Other Eukaryotes - 489 (source: NCBI BLink).; locus_type=protein_coding
AT1G20080.4	chr1:006962236	0.0	W/6962236-6962346,6962533-6962631,6962717-6962767,6962869-6962992,6963086-6963204,6963278-6963379,6963460-6963534,6963639-6963715,6963802-6964048,6964127-6964477,6964562-6964687,6964781-6964912	AT1G20080.4 CDS AT1G20080 ID=AT1G20080.4; Parent=AT1G20080; Name=AT1G20080.4; Note=Calcium-dependent lipid-binding (CaLB domain) family protein; symbol=SYTB; Dbxref=PMID:11543631, PMID:18775970, PMID:20498364, PMID:20736450, PMID:22140429, locus:2198581; curator_summary=Encodes a synaptotagmin localized on the Golgi apparatus and that regulates protein secretion via the unconventional protein transport from the cytosol to the extracellular matrix in plant cells.; computational_description=SYTB%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 6 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029)%2C C2 calcium/lipid-binding domain%2C CaLB (InterPro:IPR008973)%2C C2 region (InterPro:IPR020477)%2C C2 calcium-dependent membrane targeting (InterPro:IPR000008)%3B BEST Arabidopsis thaliana protein match is: synaptotagmin A (TAIR:AT2G20990.1)%3B Has 7272 Blast hits to 5651 proteins in 270 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 4705%3B Fungi - 871%3B Plants - 1207%3B Viruses - 0%3B Other Eukaryotes - 489 (source: NCBI BLink).; locus_type=protein_coding
AT1G20080.5	chr1:006962236	0.0	W/6962236-6962346,6962533-6962631,6962717-6962767,6962869-6962992,6963086-6963204,6963278-6963379,6963460-6963534,6963639-6963715,6963802-6964048,6964127-6964477,6964562-6964687,6964781-6964912	AT1G20080.5 CDS AT1G20080 ID=AT1G20080.5; Parent=AT1G20080; Name=AT1G20080.5; Note=Calcium-dependent lipid-binding (CaLB domain) family protein; symbol=SYTB; Dbxref=PMID:11543631, PMID:18775970, PMID:20498364, PMID:20736450, PMID:22140429, locus:2198581; curator_summary=Encodes a synaptotagmin localized on the Golgi apparatus and that regulates protein secretion via the unconventional protein transport from the cytosol to the extracellular matrix in plant cells.; computational_description=SYTB%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 6 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029)%2C C2 calcium/lipid-binding domain%2C CaLB (InterPro:IPR008973)%2C C2 region (InterPro:IPR020477)%2C C2 calcium-dependent membrane targeting (InterPro:IPR000008)%3B BEST Arabidopsis thaliana protein match is: synaptotagmin A (TAIR:AT2G20990.1)%3B Has 7272 Blast hits to 5651 proteins in 270 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 4705%3B Fungi - 871%3B Plants - 1207%3B Viruses - 0%3B Other Eukaryotes - 489 (source: NCBI BLink).; locus_type=protein_coding
AT1G20090.1	chr1:006967223	0.0	W/6967223-6967318,6967617-6967704,6967790-6967899,6967981-6968044,6968193-6968257,6968340-6968405,6968505-6968603	AT1G20090.1 CDS AT1G20090 ID=AT1G20090.1; Parent=AT1G20090; Name=AT1G20090.1; Note=RHO-related protein from plants 2; curator_summary=Member of the Rho GTPase family. Functions to organize the microtubular cytoskeleton in combination with RIC1 and RIC4. These interactions affect pavement cell morphogenesis and pollen tube growth. ROP2 expression is stimulated by brassinosteroid treatment. Inhibit light-induced stomatal opening.; conf_class=2; symbol=ROP2; Alias=ARAC4, Arabidopsis RAC-like 4, ATRAC4, ATROP2; full_name=RHO-related protein from plants 2; computational_description=RHO-related protein from plants 2 (ROP2)%3B CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225)%2C Ras GTPase (InterPro:IPR001806)%2C Ras (InterPro:IPR013753)%2C Ras small GTPase%2C Rab type (InterPro:IPR003579)%2C Ras small GTPase%2C Ras type (InterPro:IPR003577)%2C Small GTPase%2C Rho type (InterPro:IPR003578)%3B BEST Arabidopsis thaliana protein match is: RAC-like GTP binding protein 5 (TAIR:AT1G75840.1)%3B Has 24645 Blast hits to 24619 proteins in 682 species: Archae - 9%3B Bacteria - 67%3B Metazoa - 12700%3B Fungi - 3846%3B Plants - 2697%3B Viruses - 20%3B Other Eukaryotes - 5306 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9765526, PMID:9349271, PMID:11102387, PMID:12456757, PMID:12644670, PMID:15469496, PMID:20736450, PMID:20876100, PMID:20887895, PMID:21477123, PMID:21883287, PMID:22098134, PMID:22145096, PMID:22509133, PMID:23846874, PMID:24400013, PMID:25487440, locus:2198566; locus_type=protein_coding
AT1G20100.1	chr1:006969314	0.0	C/6969314-6969819,6969909-6970179,6970619-6970699	AT1G20100.1 CDS AT1G20100 ID=AT1G20100.1; Parent=AT1G20100; Name=AT1G20100.1; Note=DNA ligase-like protein; conf_class=2; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75860.1)%3B Has 471 Blast hits to 438 proteins in 92 species: Archae - 0%3B Bacteria - 14%3B Metazoa - 217%3B Fungi - 43%3B Plants - 91%3B Viruses - 1%3B Other Eukaryotes - 105 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14993207, PMID:15634198, PMID:18775970, locus:2198556; locus_type=protein_coding
AT1G20100.2	chr1:006969409	0.0	C/6969409-6969507,6969620-6969819,6969909-6970179,6970619-6970699	AT1G20100.2 CDS AT1G20100 ID=AT1G20100.2; Parent=AT1G20100; Name=AT1G20100.2; Note=DNA ligase-like protein; conf_class=3; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75860.1)%3B Has 471 Blast hits to 438 proteins in 92 species: Archae - 0%3B Bacteria - 14%3B Metazoa - 217%3B Fungi - 43%3B Plants - 91%3B Viruses - 1%3B Other Eukaryotes - 105 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14993207, PMID:15634198, PMID:18775970, locus:2198556; locus_type=protein_coding
AT1G20110.1	chr1:006971554	0.0	W/6971554-6972558,6972631-6972717,6972810-6972941,6973043-6973174,6973329-6973394,6973480-6973590,6973736-6973828,6973938-6973971,6974062-6974129,6974501-6974578	AT1G20110.1 CDS AT1G20110 ID=AT1G20110.1; Parent=AT1G20110; Name=AT1G20110.1; Note=RING/FYVE/PHD zinc finger superfamily protein; curator_summary=Encodes a protein that is localized to the peripheral membrane of late endosomal compartments. Involved in the regulation of mulitivesicular/prevacuolar compartment protein sorting. Loss of function mutations are embryo lethal.; conf_class=2; Alias=FREE1, FYVE domain protein required for endosomal sorting 1, FYVE1, FYVE-domain protein 1; computational_description=RING/FYVE/PHD zinc finger superfamily protein%3B FUNCTIONS IN: phosphoinositide binding%3B INVOLVED IN: signal transduction%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C FYVE-type (InterPro:IPR000306)%2C Zinc finger%2C FYVE-related (InterPro:IPR017455)%2C Zinc finger%2C FYVE/PHD-type (InterPro:IPR011011)%3B BEST Arabidopsis thaliana protein match is: phosphatidylinositol-4-phosphate 5-kinase family protein (TAIR:AT3G14270.1)%3B Has 29282 Blast hits to 20083 proteins in 828 species: Archae - 11%3B Bacteria - 1932%3B Metazoa - 10999%3B Fungi - 6486%3B Plants - 4104%3B Viruses - 590%3B Other Eukaryotes - 5160 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14581625, PMID:15358268, PMID:18541146, PMID:18650403, PMID:18775970, PMID:20678208, PMID:21700722, PMID:22645532, PMID:24843126, PMID:25438943, PMID:25624505, PMID:25699591, locus:2198646; locus_type=protein_coding
AT1G20120.1	chr1:006975504	0.0	W/6975504-6975891,6976030-6976160,6976263-6976496,6976582-6976837,6976924-6977123	AT1G20120.1 CDS AT1G20120 ID=AT1G20120.1; Parent=AT1G20120; Name=AT1G20120.1; Note=GDSL-like Lipase/Acylhydrolase superfamily protein; conf_class=2; computational_description=GDSL-like Lipase/Acylhydrolase superfamily protein%3B FUNCTIONS IN: lipase activity%2C hydrolase activity%2C acting on ester bonds%2C carboxylesterase activity%3B INVOLVED IN: lipid metabolic process%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 8 plant structures%3B EXPRESSED DURING: 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Lipase%2C GDSL%2C active site (InterPro:IPR008265)%2C Lipase%2C GDSL (InterPro:IPR001087)%3B BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G20132.1)%3B Has 3842 Blast hits to 3728 proteins in 303 species: Archae - 6%3B Bacteria - 497%3B Metazoa - 14%3B Fungi - 63%3B Plants - 3136%3B Viruses - 3%3B Other Eukaryotes - 123 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, locus:2198666; locus_type=protein_coding
AT1G20130.2	chr1:006977781	0.0	W/6977781-6977803,6977932-6977956,6978047-6978704,6978870-6979000,6979090-6979353,6979472-6979718,6979807-6980003	AT1G20130.2 CDS AT1G20130 ID=AT1G20130.2; Parent=AT1G20130; Name=AT1G20130.2; Note=GDSL-like Lipase/Acylhydrolase superfamily protein; conf_class=6; computational_description=GDSL-like Lipase/Acylhydrolase superfamily protein%3B FUNCTIONS IN: structural constituent of cell wall%2C lipase activity%2C hydrolase activity%2C acting on ester bonds%3B INVOLVED IN: lipid metabolic process%3B CONTAINS InterPro DOMAIN/s: Pistil-specific extensin-like protein (InterPro:IPR003882)%2C Lipase%2C GDSL%2C active site (InterPro:IPR008265)%2C Lipase%2C GDSL (InterPro:IPR001087)%3B BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G20132.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:12777046, PMID:14576160, PMID:15010618, PMID:15100403, PMID:16359384, PMID:18426585, PMID:20736450, locus:2198636; locus_type=protein_coding
AT1G20130.1	chr1:006977939	0.0	W/6977939-6978704,6978870-6979000,6979090-6979353,6979472-6979718,6979807-6980003	AT1G20130.1 CDS AT1G20130 ID=AT1G20130.1; Parent=AT1G20130; Name=AT1G20130.1; Note=GDSL-like Lipase/Acylhydrolase superfamily protein; conf_class=2; computational_description=GDSL-like Lipase/Acylhydrolase superfamily protein%3B FUNCTIONS IN: structural constituent of cell wall%2C lipase activity%2C hydrolase activity%2C acting on ester bonds%3B INVOLVED IN: lipid metabolic process%3B CONTAINS InterPro DOMAIN/s: Pistil-specific extensin-like protein (InterPro:IPR003882)%2C Lipase%2C GDSL%2C active site (InterPro:IPR008265)%2C Lipase%2C GDSL (InterPro:IPR001087)%3B BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G20132.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12777046, PMID:14576160, PMID:15010618, PMID:15100403, PMID:16359384, PMID:18426585, PMID:20736450, locus:2198636; locus_type=protein_coding
AT1G20132.1	chr1:006981358	0.0	W/6981358-6981694,6981876-6982006,6982081-6982314,6982958-6983213,6983302-6983495	AT1G20132.1 CDS AT1G20132 ID=AT1G20132.1; Parent=AT1G20132; Name=AT1G20132.1; Note=GDSL-like Lipase/Acylhydrolase superfamily protein; conf_class=2; computational_description=GDSL-like Lipase/Acylhydrolase superfamily protein%3B FUNCTIONS IN: hydrolase activity%2C acting on ester bonds%2C lipase activity%3B INVOLVED IN: lipid metabolic process%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: Lipase%2C GDSL%2C active site (InterPro:IPR008265)%2C Lipase%2C GDSL (InterPro:IPR001087)%3B BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G20120.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:4515102552; locus_type=protein_coding
AT1TE22560	chr1:006982367	0.0	W/6982367-6982963	AT1TE22560 transposable_element AT1TE22560 ID=AT1TE22560; Name=AT1TE22560; Alias=ATREP11
AT1G20135.1	chr1:006984124	0.0	W/6984124-6984364,6984497-6984627,6984716-6984952,6985034-6985283,6985371-6985498	AT1G20135.1 CDS AT1G20135 ID=AT1G20135.1; Parent=AT1G20135; Name=AT1G20135.1; Note=GDSL-like Lipase/Acylhydrolase family protein; conf_class=2; computational_description=GDSL-like Lipase/Acylhydrolase family protein%3B FUNCTIONS IN: lipase activity%2C hydrolase activity%2C acting on ester bonds%3B INVOLVED IN: lipid metabolic process%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: petal%2C leaf whorl%2C flower%2C carpel%2C stamen%3B EXPRESSED DURING: 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Lipase%2C GDSL%2C active site (InterPro:IPR008265)%2C Lipase%2C GDSL (InterPro:IPR001087)%3B BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT5G63170.1)%3B Has 3502 Blast hits to 3463 proteins in 221 species: Archae - 0%3B Bacteria - 352%3B Metazoa - 0%3B Fungi - 12%3B Plants - 3126%3B Viruses - 0%3B Other Eukaryotes - 12 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:20032078, locus:4515102553; locus_type=protein_coding
AT1G20140.1	chr1:006986430	0.0	W/6986430-6986747,6986906-6987079	AT1G20140.1 CDS AT1G20140 ID=AT1G20140.1; Parent=AT1G20140; Name=AT1G20140.1; Note=SKP1-like 4; conf_class=2; symbol=SK4; Alias=ASK4, SKP1-like 4; full_name=SKP1-like 4; computational_description=SKP1-like 4 (SK4)%3B CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase%2C SCF complex%2C Skp subunit (InterPro:IPR016897)%2C SKP1 component%2C dimerisation (InterPro:IPR016072)%2C SKP1 component (InterPro:IPR001232)%2C BTB/POZ fold (InterPro:IPR011333)%2C SKP1 component%2C POZ (InterPro:IPR016073)%3B BEST Arabidopsis thaliana protein match is: SKP1-like 3 (TAIR:AT2G25700.1)%3B Has 1439 Blast hits to 1435 proteins in 269 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 560%3B Fungi - 180%3B Plants - 528%3B Viruses - 11%3B Other Eukaryotes - 160 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11387208, PMID:12795696, PMID:13677462, PMID:12970487, PMID:14749489, PMID:15282545, PMID:15610358, PMID:17470057, PMID:21119043, PMID:21477822, PMID:23226441, locus:2198621; locus_type=protein_coding
AT1G20150.1	chr1:006987332	0.0	C/6987332-6987927,6988007-6988217,6988304-6988418,6988530-6988772,6988851-6988951,6989021-6989534,6989617-6989734,6989831-6990096,6990183-6990361	AT1G20150.1 CDS AT1G20150 ID=AT1G20150.1; Parent=AT1G20150; Name=AT1G20150.1; Note=Subtilisin-like serine endopeptidase family protein; conf_class=2; computational_description=Subtilisin-like serine endopeptidase family protein%3B FUNCTIONS IN: identical protein binding%2C serine-type endopeptidase activity%3B INVOLVED IN: proteolysis%2C negative regulation of catalytic activity%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: leaf whorl%2C sepal%2C root%2C flower%2C seed%3B EXPRESSED DURING: F mature embryo stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%3B CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137)%2C Proteinase inhibitor%2C propeptide (InterPro:IPR009020)%2C Peptidase S8/S53%2C subtilisin/kexin/sedolisin (InterPro:IPR000209)%2C Peptidase S8/S53%2C subtilisin%2C active site (InterPro:IPR022398)%2C Proteinase inhibitor I9%2C subtilisin propeptide (InterPro:IPR010259)%2C Peptidase S8%2C subtilisin-related (InterPro:IPR015500)%3B BEST Arabidopsis thaliana protein match is: Subtilisin-like serine endopeptidase family protein (TAIR:AT1G20160.1)%3B Has 5897 Blast hits to 5420 proteins in 979 species: Archae - 165%3B Bacteria - 3134%3B Metazoa - 93%3B Fungi - 262%3B Plants - 1911%3B Viruses - 0%3B Other Eukaryotes - 332 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14697270, PMID:16193095, PMID:16895613, locus:2198606; locus_type=protein_coding
AT1G20160.1	chr1:006990852	0.0	C/6990852-6991426,6991507-6991717,6991791-6991905,6991987-6992229,6992338-6992438,6992516-6993029,6993113-6993224,6993329-6993582,6993670-6993854	AT1G20160.1 CDS AT1G20160 ID=AT1G20160.1; Parent=AT1G20160; Name=AT1G20160.1; Note=Subtilisin-like serine endopeptidase family protein; curator_summary=Encodes a secreted%2C cell wall localized subtilisin-like serine protease that is involved in regulation of stomatal development.; conf_class=2; symbol=ATSBT5.2; computational_description=ATSBT5.2%3B FUNCTIONS IN: identical protein binding%2C serine-type endopeptidase activity%3B INVOLVED IN: proteolysis%2C negative regulation of catalytic activity%3B LOCATED IN: apoplast%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137)%2C Proteinase inhibitor%2C propeptide (InterPro:IPR009020)%2C Peptidase S8/S53%2C subtilisin/kexin/sedolisin (InterPro:IPR000209)%2C Peptidase S8%2C subtilisin-related (InterPro:IPR015500)%2C Proteinase inhibitor I9%2C subtilisin propeptide (InterPro:IPR010259)%2C Peptidase S8/S53%2C subtilisin%2C active site (InterPro:IPR022398)%3B BEST Arabidopsis thaliana protein match is: Subtilisin-like serine endopeptidase family protein (TAIR:AT1G20150.1)%3B Has 8668 Blast hits to 7419 proteins in 1217 species: Archae - 260%3B Bacteria - 4948%3B Metazoa - 184%3B Fungi - 671%3B Plants - 1928%3B Viruses - 0%3B Other Eukaryotes - 677 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14697270, PMID:15694452, PMID:15923329, PMID:16193095, PMID:16895613, PMID:16969662, PMID:17351116, PMID:20736450, PMID:23148892, PMID:25043023, locus:2198656; locus_type=protein_coding
AT1G20160.2	chr1:006990852	0.0	C/6990852-6991426,6991507-6991717,6991791-6991905,6991987-6992229,6992338-6992438,6992516-6993029,6993113-6993224,6993329-6993582,6993670-6993737	AT1G20160.2 CDS AT1G20160 ID=AT1G20160.2; Parent=AT1G20160; Name=AT1G20160.2; Note=Subtilisin-like serine endopeptidase family protein; curator_summary=Encodes a secreted%2C cell wall localized subtilisin-like serine protease that is involved in regulation of stomatal development.; conf_class=2; symbol=ATSBT5.2; computational_description=ATSBT5.2%3B FUNCTIONS IN: identical protein binding%2C serine-type endopeptidase activity%3B INVOLVED IN: proteolysis%2C negative regulation of catalytic activity%3B LOCATED IN: apoplast%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137)%2C Proteinase inhibitor%2C propeptide (InterPro:IPR009020)%2C Peptidase S8/S53%2C subtilisin/kexin/sedolisin (InterPro:IPR000209)%2C Peptidase S8%2C subtilisin-related (InterPro:IPR015500)%2C Proteinase inhibitor I9%2C subtilisin propeptide (InterPro:IPR010259)%2C Peptidase S8/S53%2C subtilisin%2C active site (InterPro:IPR022398)%3B BEST Arabidopsis thaliana protein match is: Subtilisin-like serine endopeptidase family protein (TAIR:AT1G20150.1)%3B Has 8668 Blast hits to 7419 proteins in 1217 species: Archae - 260%3B Bacteria - 4948%3B Metazoa - 184%3B Fungi - 671%3B Plants - 1928%3B Viruses - 0%3B Other Eukaryotes - 677 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14697270, PMID:15694452, PMID:15923329, PMID:16193095, PMID:16895613, PMID:16969662, PMID:17351116, PMID:20736450, PMID:23148892, PMID:25043023, locus:2198656; locus_type=protein_coding
AT1G20160.3	chr1:006991567	0.0	C/6991567-6991698,6991791-6991905,6991987-6992229,6992338-6992438,6992516-6993029,6993113-6993224,6993329-6993582,6993670-6993854	AT1G20160.3 CDS AT1G20160 ID=AT1G20160.3; Parent=AT1G20160; Name=AT1G20160.3; Note=Subtilisin-like serine endopeptidase family protein; symbol=ATSBT5.2; curator_summary=Encodes a secreted%2C cell wall localized subtilisin-like serine protease that is involved in regulation of stomatal development.; computational_description=ATSBT5.2%3B FUNCTIONS IN: identical protein binding%2C serine-type endopeptidase activity%3B INVOLVED IN: proteolysis%2C negative regulation of catalytic activity%3B LOCATED IN: apoplast%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137)%2C Proteinase inhibitor%2C propeptide (InterPro:IPR009020)%2C Peptidase S8/S53%2C subtilisin/kexin/sedolisin (InterPro:IPR000209)%2C Peptidase S8%2C subtilisin-related (InterPro:IPR015500)%2C Proteinase inhibitor I9%2C subtilisin propeptide (InterPro:IPR010259)%2C Peptidase S8/S53%2C subtilisin%2C active site (InterPro:IPR022398)%3B BEST Arabidopsis thaliana protein match is: Subtilisin-like serine endopeptidase family protein (TAIR:AT1G20150.1)%3B Has 8668 Blast hits to 7419 proteins in 1217 species: Archae - 260%3B Bacteria - 4948%3B Metazoa - 184%3B Fungi - 671%3B Plants - 1928%3B Viruses - 0%3B Other Eukaryotes - 677 (source: NCBI BLink).; Dbxref=PMID:14697270, PMID:15694452, PMID:15923329, PMID:16193095, PMID:16895613, PMID:16969662, PMID:17351116, PMID:20736450, PMID:23148892, PMID:25043023, locus:2198656; locus_type=protein_coding
AT1G20170.1	chr1:006995282	0.0	C/6995282-6995353	AT1G20170.1 tRNA AT1G20170 ID=AT1G20170.1; Parent=AT1G20170; Note=tRNA-Glu; computational_description=tRNA-Glu (anticodon: TTC); Dbxref=PMID:8980477, PMID:23066098, PMID:8980477, locus:3692265; Name=AT1G20170.1; locus_type=pre_trna
AT1G20180.1	chr1:006996354	0.0	W/6996354-6996411,6996665-6997779	AT1G20180.1 CDS AT1G20180 ID=AT1G20180.1; Parent=AT1G20180; Name=AT1G20180.1; Note=transmembrane protein (DUF677); conf_class=1; computational_description=Protein of unknown function (DUF677)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF677) (TAIR:AT3G49070.1)%3B Has 186 Blast hits to 186 proteins in 11 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 186%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:17227549, PMID:18650403, PMID:20736450, locus:2198591; locus_type=protein_coding
AT1G20180.2	chr1:006996354	0.0	W/6996354-6996411,6996665-6997265,6997359-6997779	AT1G20180.2 CDS AT1G20180 ID=AT1G20180.2; Parent=AT1G20180; Name=AT1G20180.2; Note=transmembrane protein (DUF677); conf_class=1; computational_description=Protein of unknown function (DUF677)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF677) (TAIR:AT3G49070.1)%3B Has 186 Blast hits to 186 proteins in 11 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 186%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:17227549, PMID:18650403, PMID:20736450, locus:2198591; locus_type=protein_coding
AT1G20190.1	chr1:006998762	0.0	C/6998762-6999068,6999175-6999496,6999581-6999710	AT1G20190.1 CDS AT1G20190 ID=AT1G20190.1; Parent=AT1G20190; Name=AT1G20190.1; Note=expansin 11; curator_summary=member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al%2C 2004. Plant Mol Bio); conf_class=2; symbol=EXPA11; Alias=ATEXP11, ATEXPA11, expansin 11, ATHEXP ALPHA 1.14, EXP11, EXPANSIN 11; full_name=expansin 11; computational_description=expansin 11 (EXPA11)%3B INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth%2C unidimensional cell growth%2C plant-type cell wall loosening%3B LOCATED IN: cell wall%3B EXPRESSED IN: 14 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009)%2C Pollen allergen%2C N-terminal (InterPro:IPR014734)%2C Expansin (InterPro:IPR002963)%2C Rare lipoprotein A (InterPro:IPR005132)%2C Expansin/Lol pI (InterPro:IPR007118)%2C Expansin 45%2C endoglucanase-like (InterPro:IPR007112)%2C Pollen allergen/expansin%2C C-terminal (InterPro:IPR007117)%3B BEST Arabidopsis thaliana protein match is: expansin A1 (TAIR:AT1G69530.4)%3B Has 2193 Blast hits to 2189 proteins in 161 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 0%3B Fungi - 64%3B Plants - 2080%3B Viruses - 0%3B Other Eukaryotes - 43 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11641069, PMID:11891242, PMID:15272873, PMID:15695462, PMID:15574398, PMID:15763661, PMID:15593128, PMID:15990873, PMID:15894741, PMID:16377748, PMID:16412086, PMID:16813576, PMID:16792696, PMID:16942607, PMID:16920880, PMID:17142483, PMID:17189325, PMID:18231654, PMID:18650403, PMID:18796151, locus:2198576; locus_type=protein_coding
AT1G20190.2	chr1:006998762	0.0	C/6998762-6999068,6999175-6999449	AT1G20190.2 CDS AT1G20190 ID=AT1G20190.2; Parent=AT1G20190; Name=AT1G20190.2; Note=expansin 11; symbol=EXPA11; Alias=ATEXP11, ATEXPA11, expansin 11, ATHEXP ALPHA 1.14, EXP11, EXPANSIN 11; full_name=expansin 11; curator_summary=member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al%2C 2004. Plant Mol Bio); computational_description=expansin 11 (EXPA11)%3B INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth%2C unidimensional cell growth%2C plant-type cell wall loosening%3B LOCATED IN: cell wall%3B EXPRESSED IN: 14 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009)%2C Pollen allergen%2C N-terminal (InterPro:IPR014734)%2C Expansin (InterPro:IPR002963)%2C Rare lipoprotein A (InterPro:IPR005132)%2C Expansin/Lol pI (InterPro:IPR007118)%2C Expansin 45%2C endoglucanase-like (InterPro:IPR007112)%2C Pollen allergen/expansin%2C C-terminal (InterPro:IPR007117)%3B BEST Arabidopsis thaliana protein match is: expansin A1 (TAIR:AT1G69530.4)%3B Has 2193 Blast hits to 2189 proteins in 161 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 0%3B Fungi - 64%3B Plants - 2080%3B Viruses - 0%3B Other Eukaryotes - 43 (source: NCBI BLink).; Dbxref=PMID:11641069, PMID:11891242, PMID:15272873, PMID:15695462, PMID:15574398, PMID:15763661, PMID:15593128, PMID:15990873, PMID:15894741, PMID:16377748, PMID:16412086, PMID:16813576, PMID:16792696, PMID:16942607, PMID:16920880, PMID:17142483, PMID:17189325, PMID:18231654, PMID:18650403, PMID:18796151, locus:2198576; locus_type=protein_coding
AT1G20200.1	chr1:007001409	0.0	C/7001409-7001921,7002272-7002511,7002879-7002989,7003078-7003132,7003234-7003370,7003460-7003600,7003792-7003982,7004076-7004154	AT1G20200.1 CDS AT1G20200 ID=AT1G20200.1; Parent=AT1G20200; Name=AT1G20200.1; Note=PAM domain (PCI/PINT associated module) protein; conf_class=2; symbol=EMB2719; Alias=HAP15, HAPLESS 15; full_name=EMBRYO DEFECTIVE 2719; computational_description=EMBRYO DEFECTIVE 2719 (EMB2719)%3B FUNCTIONS IN: enzyme regulator activity%3B INVOLVED IN: ubiquitin-dependent protein catabolic process%2C embryo development ending in seed dormancy%3B LOCATED IN: proteasome complex%2C plasma membrane%2C proteasome regulatory particle%2C lid subcomplex%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Proteasome component (PCI) domain (InterPro:IPR000717)%2C PCI/PINT associated module (InterPro:IPR013143)%2C 26S proteasome regulatory subunit%2C C-terminal (InterPro:IPR013586)%3B BEST Arabidopsis thaliana protein match is: PAM domain (PCI/PINT associated module) protein (TAIR:AT1G75990.1)%3B Has 763 Blast hits to 760 proteins in 218 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 312%3B Fungi - 164%3B Plants - 180%3B Viruses - 0%3B Other Eukaryotes - 107 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10363660, PMID:12609025, PMID:14623884, PMID:15514068, PMID:15531708, PMID:18650403, PMID:20516081, locus:2198561; locus_type=protein_coding
AT1G20210.1	chr1:007004514	0.0	W/7004514-7004585	AT1G20210.1 tRNA AT1G20210 ID=AT1G20210.1; Parent=AT1G20210; Note=tRNA-Asp; computational_description=tRNA-Asp (anticodon: GTC); Dbxref=PMID:8980477, PMID:23066098, PMID:8980477, locus:3692262; Name=AT1G20210.1; locus_type=pre_trna
AT1G20220.1	chr1:007005090	0.0	C/7005090-7005181,7005262-7005495,7005615-7005671,7005779-7005835,7005953-7006027,7006115-7006179,7006305-7006379,7006510-7006598,7006685-7006765,7007163-7007285	AT1G20220.1 CDS AT1G20220 ID=AT1G20220.1; Parent=AT1G20220; Name=AT1G20220.1; Note=Alba DNA/RNA-binding protein; conf_class=2; computational_description=Alba DNA/RNA-binding protein%3B FUNCTIONS IN: nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plant-type cell wall%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Alba%2C DNA/RNA-binding protein (InterPro:IPR002775)%3B BEST Arabidopsis thaliana protein match is: Alba DNA/RNA-binding protein (TAIR:AT1G76010.1)%3B Has 46942 Blast hits to 19054 proteins in 1334 species: Archae - 23%3B Bacteria - 15382%3B Metazoa - 15943%3B Fungi - 3395%3B Plants - 5072%3B Viruses - 633%3B Other Eukaryotes - 6494 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16287169, PMID:18775970, PMID:22487254, locus:2198551; locus_type=protein_coding
AT1G20225.1	chr1:007007966	0.0	C/7007966-7008148,7008413-7008574,7008722-7008824,7009065-7009318	AT1G20225.1 CDS AT1G20225 ID=AT1G20225.1; Parent=AT1G20225; Name=AT1G20225.1; Note=Thioredoxin superfamily protein; conf_class=2; computational_description=Thioredoxin superfamily protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: vacuole%3B CONTAINS InterPro DOMAIN/s: Thioredoxin-like fold (InterPro:IPR012336)%3B BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT1G76020.1)%3B Has 208 Blast hits to 204 proteins in 76 species: Archae - 0%3B Bacteria - 103%3B Metazoa - 14%3B Fungi - 6%3B Plants - 51%3B Viruses - 0%3B Other Eukaryotes - 34 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:504956159; locus_type=protein_coding
AT1G20230.1	chr1:007009570	0.0	W/7009570-7011852	AT1G20230.1 CDS AT1G20230 ID=AT1G20230.1; Parent=AT1G20230; Name=AT1G20230.1; Note=Pentatricopeptide repeat (PPR) superfamily protein; conf_class=4; computational_description=Pentatricopeptide repeat (PPR) superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G23330.1)%3B Has 43615 Blast hits to 14351 proteins in 266 species: Archae - 0%3B Bacteria - 17%3B Metazoa - 112%3B Fungi - 108%3B Plants - 42635%3B Viruses - 0%3B Other Eukaryotes - 743 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:15269332, PMID:15565108, locus:2198546; locus_type=protein_coding
AT1G20240.1	chr1:007012113	0.0	C/7012113-7013094,7014498-7015216	AT1G20240.1 CDS AT1G20240 ID=AT1G20240.1; Parent=AT1G20240; Name=AT1G20240.1; Note=SWI-SNF-related chromatin binding protein; conf_class=9; computational_description=SWI-SNF-related chromatin binding protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: mitochondrion%3B BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G20940.1)%3B Has 101 Blast hits to 51 proteins in 5 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 101%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*; Dbxref=PMID:20736450, locus:2012923; locus_type=protein_coding
AT1TE22660	chr1:007013323	0.0	W/7013323-7013781	AT1TE22660 transposable_element AT1TE22660 ID=AT1TE22660; Name=AT1TE22660; Alias=ATREP19
AT1TE22665	chr1:007013782	0.0	C/7013782-7013897	AT1TE22665 transposable_element AT1TE22665 ID=AT1TE22665; Name=AT1TE22665; Alias=ATREP1
AT1TE22670	chr1:007015746	0.0	C/7015746-7016316	AT1TE22670 transposable_element AT1TE22670 ID=AT1TE22670; Name=AT1TE22670; Alias=HELITRON2
AT1TE22675	chr1:007016514	0.0	W/7016514-7016567	AT1TE22675 transposable_element AT1TE22675 ID=AT1TE22675; Name=AT1TE22675; Alias=ATLINEIII
AT1G20250.1	chr1:007016516	0.0	W/7016516-7016588	AT1G20250.1 tRNA AT1G20250 ID=AT1G20250.1; Parent=AT1G20250; Note=tRNA-Lys; computational_description=tRNA-Lys (anticodon: CTT); Dbxref=PMID:8980477, PMID:23066098, PMID:8980477, locus:3686993; Name=AT1G20250.1; locus_type=pre_trna
AT1G20260.1	chr1:007016971	0.0	W/7016971-7017022,7017436-7017491,7017596-7017694,7017821-7017880,7018032-7018143,7018230-7018441,7018717-7018845,7018963-7019100,7019188-7019338,7019429-7019511,7019640-7019687,7019777-7019830,7019922-7020005,7020105-7020290	AT1G20260.1 CDS AT1G20260 ID=AT1G20260.1; Parent=AT1G20260; Name=AT1G20260.1; Note=ATPase%2C V1 complex%2C subunit B protein; curator_summary=One of three genes encoding the vacuolar ATP synthase subunit B1. The protein binds to and co-localizes with F-actin%2C bundles F-actin to form higher-order structure%2C and stabilizes actin filaments in vitro.; conf_class=2; symbol=VAB3; Alias=AtVAB3; full_name=V-ATPase B subunit 3; computational_description=ATPase%2C V1 complex%2C subunit B protein%3B FUNCTIONS IN: hydrogen ion transporting ATP synthase activity%2C rotational mechanism%2C hydrolase activity%2C acting on acid anhydrides%2C catalyzing transmembrane movement of substances%2C ATP binding%2C proton-transporting ATPase activity%2C rotational mechanism%3B INVOLVED IN: proton transport%2C ATP metabolic process%2C ATP synthesis coupled proton transport%3B LOCATED IN: plasma membrane%2C chloroplast%2C vacuole%3B EXPRESSED IN: cotyledon%2C male gametophyte%2C guard cell%2C cultured cell%3B EXPRESSED DURING: seedling growth%2C seed development stages%3B CONTAINS InterPro DOMAIN/s: ATPase%2C alpha/beta subunit%2C nucleotide-binding domain%2C active site (InterPro:IPR020003)%2C ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C C-terminal (InterPro:IPR000793)%2C ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C N-terminal (InterPro:IPR004100)%2C ATPase%2C alpha/beta subunit%2C nucleotide-binding domain (InterPro:IPR000194)%2C ATPase%2C V1 complex%2C subunit B (InterPro:IPR005723)%3B BEST Arabidopsis thaliana protein match is: ATPase%2C V1 complex%2C subunit B protein (TAIR:AT1G76030.1)%3B Has 40448 Blast hits to 39328 proteins in 9688 species: Archae - 965%3B Bacteria - 20989%3B Metazoa - 1674%3B Fungi - 795%3B Plants - 8187%3B Viruses - 0%3B Other Eukaryotes - 7838 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11950611, PMID:15215502, PMID:15295017, PMID:15489341, PMID:15618420, PMID:15539469, PMID:16247729, PMID:16581873, PMID:20118269, PMID:22371505, locus:2012913; locus_type=protein_coding
AT1G20270.1	chr1:007021383	0.0	C/7021383-7021456,7021558-7021745,7021832-7021961,7022116-7022213,7022327-7022424,7022562-7022646,7022733-7022923	AT1G20270.1 CDS AT1G20270 ID=AT1G20270.1; Parent=AT1G20270; Name=AT1G20270.1; Note=2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; conf_class=2; computational_description=2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein%3B FUNCTIONS IN: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors%2C oxidoreductase activity%2C oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C L-ascorbic acid binding%2C iron ion binding%3B INVOLVED IN: oxidation reduction%2C peptidyl-proline hydroxylation to 4-hydroxy-L-proline%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase%2C alpha subunit (InterPro:IPR006620)%2C Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123)%3B BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT5G66060.1)%3B Has 2479 Blast hits to 2467 proteins in 338 species: Archae - 0%3B Bacteria - 393%3B Metazoa - 997%3B Fungi - 73%3B Plants - 409%3B Viruses - 15%3B Other Eukaryotes - 592 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16081496, PMID:16941220, PMID:16935991, PMID:18650403, PMID:18775970, locus:2012903; locus_type=protein_coding
AT1G20270.2	chr1:007021828	0.0	C/7021828-7021961,7022116-7022213,7022327-7022424,7022562-7022646,7022733-7022923	AT1G20270.2 CDS AT1G20270 ID=AT1G20270.2; Parent=AT1G20270; Name=AT1G20270.2; Note=2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; computational_description=2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein%3B FUNCTIONS IN: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors%2C oxidoreductase activity%2C oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C L-ascorbic acid binding%2C iron ion binding%3B INVOLVED IN: oxidation reduction%2C peptidyl-proline hydroxylation to 4-hydroxy-L-proline%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase%2C alpha subunit (InterPro:IPR006620)%2C Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123)%3B BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT5G66060.1)%3B Has 2479 Blast hits to 2467 proteins in 338 species: Archae - 0%3B Bacteria - 393%3B Metazoa - 997%3B Fungi - 73%3B Plants - 409%3B Viruses - 15%3B Other Eukaryotes - 592 (source: NCBI BLink).; Dbxref=PMID:16081496, PMID:16941220, PMID:16935991, PMID:18650403, PMID:18775970, locus:2012903; locus_type=protein_coding
AT1G20270.3	chr1:007021828	0.0	C/7021828-7021961,7022116-7022213,7022327-7022424,7022562-7022646,7022733-7022923	AT1G20270.3 CDS AT1G20270 ID=AT1G20270.3; Parent=AT1G20270; Name=AT1G20270.3; Note=2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; computational_description=2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein%3B FUNCTIONS IN: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors%2C oxidoreductase activity%2C oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C L-ascorbic acid binding%2C iron ion binding%3B INVOLVED IN: oxidation reduction%2C peptidyl-proline hydroxylation to 4-hydroxy-L-proline%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase%2C alpha subunit (InterPro:IPR006620)%2C Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123)%3B BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT5G66060.1)%3B Has 2479 Blast hits to 2467 proteins in 338 species: Archae - 0%3B Bacteria - 393%3B Metazoa - 997%3B Fungi - 73%3B Plants - 409%3B Viruses - 15%3B Other Eukaryotes - 592 (source: NCBI BLink).; Dbxref=PMID:16081496, PMID:16941220, PMID:16935991, PMID:18650403, PMID:18775970, locus:2012903; locus_type=protein_coding
AT1TE22690	chr1:007023493	0.0	C/7023493-7023545	AT1TE22690 transposable_element AT1TE22690 ID=AT1TE22690; Name=AT1TE22690; Alias=ATMU6N1
AT1TE22695	chr1:007023546	0.0	W/7023546-7024535	AT1TE22695 transposable_element AT1TE22695 ID=AT1TE22695; Name=AT1TE22695; Alias=ATMU6N1
AT1G20280.1	chr1:007023829	0.0	W/7023829-7023916,7024063-7024145	AT1G20280.1 CDS AT1G20280 ID=AT1G20280.1; Parent=AT1G20280; Name=AT1G20280.1; Note=homeobox-leucine zipper protein-like protein; conf_class=4; computational_description=homeobox-leucine zipper protein-related%3B BEST Arabidopsis thaliana protein match is: homeobox-leucine zipper protein-related (TAIR:AT1G61200.1)%3B Has 19 Blast hits to 19 proteins in 9 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 19%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:14605227, locus:2012933; locus_type=protein_coding
AT1TE22700	chr1:007024536	0.0	C/7024536-7024565	AT1TE22700 transposable_element AT1TE22700 ID=AT1TE22700; Name=AT1TE22700; Alias=ATMU6N1
AT1TE22705	chr1:007024566	0.0	C/7024566-7024640	AT1TE22705 transposable_element AT1TE22705 ID=AT1TE22705; Name=AT1TE22705; Alias=ATMU6
AT1TE22710	chr1:007025035	0.0	W/7025035-7025356	AT1TE22710 transposable_element AT1TE22710 ID=AT1TE22710; Name=AT1TE22710; Alias=ATENSPM6
AT1G20290.1	chr1:007025548	0.0	C/7025548-7026091,7026413-7026725,7028359-7028569,7029618-7029698	AT1G20290.1 CDS AT1G20290 ID=AT1G20290.1; Parent=AT1G20290; Name=AT1G20290.1; Note=SWI-SNF-related chromatin binding protein; conf_class=8; computational_description=SWI-SNF-related chromatin binding protein%3B BEST Arabidopsis thaliana protein match is: SWI-SNF-related chromatin binding protein (TAIR:AT1G20240.1)%3B Has 82 Blast hits to 78 proteins in 10 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1%3B Fungi - 0%3B Plants - 81%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*; Dbxref=locus:2012893; locus_type=protein_coding
AT1TE22715	chr1:007026775	0.0	C/7026775-7026807	AT1TE22715 transposable_element AT1TE22715 ID=AT1TE22715; Name=AT1TE22715; Alias=ATREP15
AT1TE22720	chr1:007026808	0.0	C/7026808-7028132	AT1TE22720 transposable_element AT1TE22720 ID=AT1TE22720; Name=AT1TE22720; Alias=ATREP11
AT1G20300.1	chr1:007029701	0.0	W/7029701-7031314	AT1G20300.1 CDS AT1G20300 ID=AT1G20300.1; Parent=AT1G20300; Name=AT1G20300.1; Note=Pentatricopeptide repeat (PPR) superfamily protein; conf_class=1; computational_description=Pentatricopeptide repeat (PPR) superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G77360.1)%3B Has 44443 Blast hits to 14229 proteins in 312 species: Archae - 5%3B Bacteria - 69%3B Metazoa - 601%3B Fungi - 771%3B Plants - 41531%3B Viruses - 0%3B Other Eukaryotes - 1466 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15258262, PMID:15489341, PMID:21908688, locus:2012883; locus_type=protein_coding
AT1G20310.1	chr1:007032308	0.0	W/7032308-7033030	AT1G20310.1 CDS AT1G20310 ID=AT1G20310.1; Parent=AT1G20310; Name=AT1G20310.1; Note=syringolide-induced protein; conf_class=1; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 16 plant structures%3B EXPRESSED DURING: 9 growth stages%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76070.1)%3B Has 46 Blast hits to 46 proteins in 12 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 46%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14576160, PMID:16173598, PMID:18252252, PMID:18467340, PMID:20736450, locus:2012948; locus_type=protein_coding
AT1G20320.1	chr1:007033846	0.0	C/7033846-7034874	AT1G20320.1 CDS AT1G20320 ID=AT1G20320.1; Parent=AT1G20320; Name=AT1G20320.1; Note=Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; conf_class=8; computational_description=Haloacid dehalogenase-like hydrolase (HAD) superfamily protein%3B FUNCTIONS IN: phosphoprotein phosphatase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: nucleus%3B CONTAINS InterPro DOMAIN/s: FCP1-like phosphatase%2C phosphatase domain (InterPro:IPR011947)%2C NLI interacting factor (InterPro:IPR004274)%3B BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT5G54210.1)%3B Has 1363 Blast hits to 1358 proteins in 225 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 285%3B Fungi - 300%3B Plants - 331%3B Viruses - 0%3B Other Eukaryotes - 445 (source: NCBI BLink).; conf_rating=*; Dbxref=PMID:12068129, locus:2012943; locus_type=protein_coding
AT1TE22740	chr1:007034889	0.0	C/7034889-7034944	AT1TE22740 transposable_element AT1TE22740 ID=AT1TE22740; Name=AT1TE22740; Alias=ATREP5
AT1TE22745	chr1:007034945	0.0	C/7034945-7035030	AT1TE22745 transposable_element AT1TE22745 ID=AT1TE22745; Name=AT1TE22745; Alias=ATREP5
AT1TE22750	chr1:007035031	0.0	W/7035031-7037376	AT1TE22750 transposable_element AT1TE22750 ID=AT1TE22750; Name=AT1TE22750; Alias=ATREP3
AT1TE22755	chr1:007037377	0.0	W/7037377-7037487	AT1TE22755 transposable_element AT1TE22755 ID=AT1TE22755; Name=AT1TE22755; Alias=ATREP3
AT1TE22760	chr1:007037488	0.0	W/7037488-7037582	AT1TE22760 transposable_element AT1TE22760 ID=AT1TE22760; Name=AT1TE22760; Alias=ARNOLDY2
AT1G20330.1	chr1:007038968	0.0	C/7038968-7040053	AT1G20330.1 CDS AT1G20330 ID=AT1G20330.1; Parent=AT1G20330; Name=AT1G20330.1; Note=sterol methyltransferase 2; curator_summary=Encodes a sterol-C24-methyltransferases involved in sterol biosynthesis. Mutants display altered sterol composition%2C serrated petals and sepals and altered cotyledon vascular patterning as well as ectopic endoreduplication. This suggests that suppression of endoreduplication is important for petal morphogenesis and that normal sterol composition is required for this suppression.; conf_class=1; symbol=SMT2; Alias=CVP1, COTYLEDON VASCULAR PATTERN 1, FRL1, FRILL1; full_name=sterol methyltransferase 2; computational_description=sterol methyltransferase 2 (SMT2)%3B FUNCTIONS IN: S-adenosylmethionine-dependent methyltransferase activity%3B INVOLVED IN: xylem and phloem pattern formation%2C negative regulation of DNA endoreduplication%2C multidimensional cell growth%2C sterol biosynthetic process%2C pattern specification process%3B LOCATED IN: endoplasmic reticulum%3B EXPRESSED IN: 30 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Sterol methyltransferase C-terminal (InterPro:IPR013705)%2C Methyltransferase type 11 (InterPro:IPR013216)%3B BEST Arabidopsis thaliana protein match is: sterol methyltransferase 3 (TAIR:AT1G76090.1)%3B Has 13231 Blast hits to 13223 proteins in 2296 species: Archae - 440%3B Bacteria - 9200%3B Metazoa - 162%3B Fungi - 455%3B Plants - 664%3B Viruses - 0%3B Other Eukaryotes - 2310 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:10852933, PMID:10783003, PMID:10559439, PMID:9208946, PMID:11029701, PMID:11319028, PMID:12215504, PMID:14622971, PMID:15737981, PMID:11525513, PMID:16618929, PMID:18650403, PMID:18571124, PMID:20044451, PMID:20169349, PMID:20421456, PMID:20865301, PMID:22298683, PMID:23175744, PMID:23404886, PMID:23899645, locus:2012938; locus_type=protein_coding
AT1G20340.1	chr1:007042770	0.0	C/7042770-7043273	AT1G20340.1 CDS AT1G20340 ID=AT1G20340.1; Parent=AT1G20340; Name=AT1G20340.1; Note=Cupredoxin superfamily protein; curator_summary=recombination and DNA-damage resistance protein (DRT112) One of two Arabidopsis plastocyanin genes. Predominant form%2C expressed 10x higher than PETE1. PETE2 is thought to be post-transcriptionally regulated via copper accumulation and is involved in copper homeostasis. Mutation of this gene does not have obvious effect on photosynthesis. In plsp1-1 mutant plastids%2C the nonmature form of the protein localizes in the membrane.; conf_class=1; symbol=DRT112; Alias=PETE2, PLASTOCYANIN 2; full_name=DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 112; computational_description=DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 112 (DRT112)%3B FUNCTIONS IN: electron carrier activity%2C copper ion binding%3B INVOLVED IN: response to UV%2C response to chemical stimulus%2C copper ion homeostasis%2C negative regulation of translation%2C response to copper ion%3B LOCATED IN: thylakoid%2C thylakoid lumen%2C chloroplast thylakoid lumen%2C chloroplast stroma%2C chloroplast%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Blue (type 1) copper protein (InterPro:IPR001235)%2C Cupredoxin (InterPro:IPR008972)%2C Plastocyanin (InterPro:IPR002387)%2C Blue (type 1) copper domain (InterPro:IPR000923)%3B BEST Arabidopsis thaliana protein match is: plastocyanin 1 (TAIR:AT1G76100.1)%3B Has 1286 Blast hits to 1278 proteins in 235 species: Archae - 146%3B Bacteria - 416%3B Metazoa - 0%3B Fungi - 2%3B Plants - 206%3B Viruses - 5%3B Other Eukaryotes - 511 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:8479917, PMID:11719511, PMID:11826309, PMID:12376647, PMID:12773541, PMID:12913156, PMID:14576160, PMID:15010610, PMID:15208420, PMID:15971193, PMID:16159327, PMID:16500996, PMID:16684236, PMID:17163439, PMID:18230142, PMID:18433503, PMID:18431481, PMID:18650403, PMID:18633119, PMID:19084994, PMID:19403731, PMID:19825610, PMID:20736450, PMID:23802992, PMID:24841956, locus:2012928; locus_type=protein_coding
AT1G20350.1	chr1:007043737	0.0	W/7043737-7044393	AT1G20350.1 CDS AT1G20350 ID=AT1G20350.1; Parent=AT1G20350; Name=AT1G20350.1; Note=translocase inner membrane subunit 17-1; curator_summary=mitochondrial inner membrane translocase; conf_class=1; symbol=TIM17-1; Alias=ATTIM17-1, translocase inner membrane subunit 17-1; full_name=translocase inner membrane subunit 17-1; computational_description=translocase inner membrane subunit 17-1 (TIM17-1)%3B FUNCTIONS IN: protein transporter activity%2C P-P-bond-hydrolysis-driven protein transmembrane transporter activity%3B INVOLVED IN: protein transport%3B LOCATED IN: mitochondrial inner membrane presequence translocase complex%3B EXPRESSED IN: 11 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane translocase complex%2C subunit Tim17/22 (InterPro:IPR003397)%3B BEST Arabidopsis thaliana protein match is: translocase inner membrane subunit 17-2 (TAIR:AT2G37410.2)%3B Has 784 Blast hits to 781 proteins in 207 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 333%3B Fungi - 216%3B Plants - 165%3B Viruses - 0%3B Other Eukaryotes - 70 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12692332, PMID:14730085, PMID:14769929, PMID:15722347, PMID:16607029, PMID:16766691, PMID:16941219, PMID:17227549, PMID:18650403, PMID:25253887, locus:2012918; locus_type=protein_coding
AT1G05537.1	chr1:007046123	0.0	C/7046123-7046378	AT1G05537.1 lnc_RNA AT1G05537 ID=AT1G05537.1; Parent=AT1G05537; Name=AT1G05537.1; locus_type=long_noncoding_rna
AT1G20360.1	chr1:007046767	0.0	C/7046767-7047675	AT1G20360.1 CDS AT1G20360 ID=AT1G20360.1; Parent=AT1G20360; Name=AT1G20360.1; Note=F-box family protein; conf_class=1; computational_description=F-box family protein%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%3B BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G20940.1)%3B Has 127 Blast hits to 122 proteins in 15 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 127%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:20736450, locus:2012908; locus_type=protein_coding
AT1TE22790	chr1:007047676	0.0	C/7047676-7047813	AT1TE22790 transposable_element AT1TE22790 ID=AT1TE22790; Name=AT1TE22790; Alias=ATREP4
AT1TE22795	chr1:007047814	0.0	W/7047814-7048644,7048645-7048779	AT1TE22795 transposable_element AT1TE22795 ID=AT1TE22795; Name=AT1TE22795; Alias=ATREP3
AT1G05543.1	chr1:007049116	0.0	W/7049116-7049939	AT1G05543.1 lnc_RNA AT1G05543 ID=AT1G05543.1; Parent=AT1G05543; Name=AT1G05543.1; locus_type=long_noncoding_rna
AT1G05547.1	chr1:007050831	0.0	W/7050831-7051140	AT1G05547.1 ncRNA AT1G05547 ID=AT1G05547.1; Parent=AT1G05547; Name=AT1G05547.1; locus_type=other_rna
AT1G20370.1	chr1:007051846	0.0	C/7051846-7052269,7052363-7053588	AT1G20370.1 CDS AT1G20370 ID=AT1G20370.1; Parent=AT1G20370; Name=AT1G20370.1; Note=Pseudouridine synthase family protein; conf_class=1; computational_description=Pseudouridine synthase family protein%3B FUNCTIONS IN: pseudouridine synthase activity%3B INVOLVED IN: pseudouridine synthesis%2C RNA modification%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Pseudouridine synthase%2C catalytic domain (InterPro:IPR020103)%2C Pseudouridine synthase I%2C TruA%2C N-terminal (InterPro:IPR020094)%2C Pseudouridine synthase I%2C TruA%2C alpha/beta domain (InterPro:IPR020097)%2C Pseudouridine synthase I%2C TruA%2C C-terminal (InterPro:IPR020095)%2C Pseudouridine synthase I%2C TruA (InterPro:IPR001406)%3B BEST Arabidopsis thaliana protein match is: Pseudouridine synthase family protein (TAIR:AT1G76120.1)%3B Has 3883 Blast hits to 3550 proteins in 1359 species: Archae - 140%3B Bacteria - 2302%3B Metazoa - 346%3B Fungi - 312%3B Plants - 197%3B Viruses - 0%3B Other Eukaryotes - 586 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11782485, PMID:16520461, PMID:18599582, locus:2012898; locus_type=protein_coding
AT1G20375.1	chr1:007058194	0.0	W/7058194-7058310	AT1G20375.1 miRNA_primary_transcript AT1G20375 ID=AT1G20375.1; Parent=AT1G20375; Alias=p_MI0001005; Name=ath-MIR394a; symbol=MIR394A; curator_summary=Encodes a microRNA that targets one member of the F-box family. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUGGCAUUCUGUCCACCUCC. It targets F-box protein AT1g27340. It is involved in the regulation of leaf morphology.; Note=microRNA ath-MIR394a precursor; full_name=microRNA394A; Dbxref=PMID:15200956, PMID:22619471, PMID:24330668, locus:4010713456, PMID:15200956, PMID:22619471, PMID:24330668, locus:4010713456; locus_type=mirna
ath-miR394a	chr1:007058207	0.0	W/7058207-7058226	ath-miR394a miRNA ath-miR394a ID=ath-miR394a; Alias=MIMAT0000936; Name=ath-miR394a; Derives_from=AT1G20375.1; Note=microRNA ath-miR394a; computational_description=mature miRNA accession:MIMAT0000936
AT1G20380.1	chr1:007061665	0.0	W/7061665-7061774,7062144-7062363,7062436-7062636,7062717-7062787,7062900-7063062,7063195-7063788,7063878-7064258,7064341-7064480,7064561-7064696,7064783-7064896,7064982-7065047	AT1G20380.1 CDS AT1G20380 ID=AT1G20380.1; Parent=AT1G20380; Name=AT1G20380.1; Note=Prolyl oligopeptidase family protein; conf_class=2; computational_description=Prolyl oligopeptidase family protein%3B FUNCTIONS IN: serine-type peptidase activity%2C serine-type endopeptidase activity%3B INVOLVED IN: proteolysis%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 19 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase S9%2C prolyl oligopeptidase%2C catalytic domain (InterPro:IPR001375)%2C Peptidase S9A%2C oligopeptidase%2C N-terminal beta-propeller (InterPro:IPR004106)%2C Peptidase S9A%2C prolyl oligopeptidase (InterPro:IPR002470)%3B BEST Arabidopsis thaliana protein match is: Prolyl oligopeptidase family protein (TAIR:AT1G76140.1)%3B Has 7989 Blast hits to 7898 proteins in 1359 species: Archae - 93%3B Bacteria - 3809%3B Metazoa - 313%3B Fungi - 45%3B Plants - 231%3B Viruses - 0%3B Other Eukaryotes - 3498 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15632092, PMID:16520461, PMID:16895613, PMID:16998091, PMID:17059406, PMID:17217462, PMID:18775970, PMID:20736450, locus:2012888; locus_type=protein_coding
AT1G20380.2	chr1:007062592	0.0	W/7062592-7062636,7062717-7062787,7062900-7063062,7063195-7063788,7063878-7064258,7064341-7064480,7064561-7064696,7064783-7064896,7064982-7065047	AT1G20380.2 CDS AT1G20380 ID=AT1G20380.2; Parent=AT1G20380; Name=AT1G20380.2; Note=Prolyl oligopeptidase family protein; computational_description=Prolyl oligopeptidase family protein%3B FUNCTIONS IN: serine-type peptidase activity%2C serine-type endopeptidase activity%3B INVOLVED IN: proteolysis%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 19 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase S9%2C prolyl oligopeptidase%2C catalytic domain (InterPro:IPR001375)%2C Peptidase S9A%2C oligopeptidase%2C N-terminal beta-propeller (InterPro:IPR004106)%2C Peptidase S9A%2C prolyl oligopeptidase (InterPro:IPR002470)%3B BEST Arabidopsis thaliana protein match is: Prolyl oligopeptidase family protein (TAIR:AT1G76140.1)%3B Has 7989 Blast hits to 7898 proteins in 1359 species: Archae - 93%3B Bacteria - 3809%3B Metazoa - 313%3B Fungi - 45%3B Plants - 231%3B Viruses - 0%3B Other Eukaryotes - 3498 (source: NCBI BLink).; Dbxref=PMID:15632092, PMID:16520461, PMID:16895613, PMID:16998091, PMID:17059406, PMID:17217462, PMID:18775970, PMID:20736450, locus:2012888; locus_type=protein_coding
AT1G20390.1	chr1:007065494	0.0	W/7065494-7071561	AT1G20390.1 CDS AT1G20390 ID=AT1G20390.1; Parent=AT1G20390; Name=AT1G20390.1; index=1; computational_description=gypsy-like retrotransposon family%2C has a 1.5e-251 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor); Dbxref=PMID:16510518, PMID:22487254, locus:2034418; Note=transposable_element_gene; locus_type=transposable_element_gene
AT1TE22850	chr1:007066493	0.0	W/7066493-7067160,7067791-7071562	AT1TE22850 transposable_element AT1TE22850 ID=AT1TE22850; Name=AT1TE22850; Alias=ATLANTYS2
AT1TE22855	chr1:007067629	0.0	W/7067629-7067790	AT1TE22855 transposable_element AT1TE22855 ID=AT1TE22855; Name=AT1TE22855; Alias=ATLANTYS1
AT1TE22865	chr1:007071563	0.0	W/7071563-7071716	AT1TE22865 transposable_element AT1TE22865 ID=AT1TE22865; Name=AT1TE22865; Alias=ATLANTYS2
AT1G20400.1	chr1:007072192	0.0	C/7072192-7072983,7073064-7073120,7073198-7073655,7073724-7073873,7073955-7074886,7075072-7075181,7075395-7075628,7075737-7075838	AT1G20400.1 CDS AT1G20400 ID=AT1G20400.1; Parent=AT1G20400; Name=AT1G20400.1; Note=hypothetical protein (DUF1204); conf_class=6; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: cultured cell%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1204 (InterPro:IPR009596)%3B BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT2G15420.1)%3B Has 2374 Blast hits to 2027 proteins in 308 species: Archae - 22%3B Bacteria - 170%3B Metazoa - 962%3B Fungi - 207%3B Plants - 198%3B Viruses - 74%3B Other Eukaryotes - 741 (source: NCBI BLink).; conf_rating=**; Dbxref=locus:2034408; locus_type=protein_coding
AT1G20405.1	chr1:007077174	0.0	W/7077174-7077257,7077345-7077590	AT1G20405.1 CDS AT1G20405 ID=AT1G20405.1; Parent=AT1G20405; Name=AT1G20405.1; Note=hypothetical protein; conf_class=2; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF833) (TAIR:AT1G20680.2)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:4515102554; locus_type=protein_coding
AT1G20410.1	chr1:007079049	0.0	C/7079049-7079124,7079225-7079280,7079354-7079414,7079508-7079581,7079702-7079782,7079893-7079967,7080055-7080174,7080252-7080332,7080420-7080488,7080653-7080724,7080852-7080898,7081407-7081518,7081690-7081798,7081892-7082226,7082358-7082504	AT1G20410.1 CDS AT1G20410 ID=AT1G20410.1; Parent=AT1G20410; Name=AT1G20410.1; Note=Pseudouridine synthase family protein; conf_class=2; computational_description=Pseudouridine synthase family protein%3B FUNCTIONS IN: pseudouridine synthase activity%2C RNA binding%3B INVOLVED IN: pseudouridine synthesis%2C RNA modification%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Pseudouridine synthase%2C catalytic domain (InterPro:IPR020103)%3B Has 545 Blast hits to 513 proteins in 206 species: Archae - 168%3B Bacteria - 1%3B Metazoa - 125%3B Fungi - 4%3B Plants - 38%3B Viruses - 0%3B Other Eukaryotes - 209 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18315867, PMID:20736450, locus:2034398; locus_type=protein_coding
AT1G20410.2	chr1:007079049	0.0	C/7079049-7079124,7079225-7079280,7079354-7079414,7079508-7079581,7079702-7079782,7079893-7079967,7080055-7080174,7080252-7080332,7080420-7080488,7080653-7080724,7080852-7080898,7081407-7081518,7081690-7081798,7081892-7081914	AT1G20410.2 CDS AT1G20410 ID=AT1G20410.2; Parent=AT1G20410; Name=AT1G20410.2; Note=Pseudouridine synthase family protein; computational_description=Pseudouridine synthase family protein%3B FUNCTIONS IN: pseudouridine synthase activity%2C RNA binding%3B INVOLVED IN: pseudouridine synthesis%2C RNA modification%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Pseudouridine synthase%2C catalytic domain (InterPro:IPR020103)%3B Has 545 Blast hits to 513 proteins in 206 species: Archae - 168%3B Bacteria - 1%3B Metazoa - 125%3B Fungi - 4%3B Plants - 38%3B Viruses - 0%3B Other Eukaryotes - 209 (source: NCBI BLink).; Dbxref=PMID:18315867, PMID:20736450, locus:2034398; locus_type=protein_coding
AT1G20420.1	chr1:007082668	0.0	W/7082668-7082739	AT1G20420.1 tRNA AT1G20420 ID=AT1G20420.1; Parent=AT1G20420; Note=tRNA-Pro; computational_description=tRNA-Pro (anticodon: TGG); Dbxref=PMID:8980477, PMID:23066098, PMID:8980477, locus:3691027; Name=AT1G20420.1; locus_type=pre_trna
AT1G20430.1	chr1:007083471	0.0	C/7083471-7083821	AT1G20430.1 CDS AT1G20430 ID=AT1G20430.1; Parent=AT1G20430; Name=AT1G20430.1; Note=hypothetical protein; conf_class=1; computational_description=unknown protein%3B Has 29 Blast hits to 29 proteins in 10 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 29%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14671022, locus:2034387; locus_type=protein_coding
AT1G20440.1	chr1:007084722	0.0	C/7084722-7085180,7085326-7085664	AT1G20440.1 CDS AT1G20440 ID=AT1G20440.1; Parent=AT1G20440; Name=AT1G20440.1; Note=cold-regulated 47; curator_summary=Belongs to the dehydrin protein family%2C which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences%2C the K-%2C S-%2C Y- and lysine rich segments. Cold regulated gene%2C amino acid sequence homology with Group II LEA (late embryogenesis abundant) proteins. Also responds to osmotic stress%2C ABA%2C dehydration and inhibits e.coli growth while overexpressed. COR47 and RAB18 double overexpressor plants are cold tolerant.; conf_class=2; symbol=COR47; Alias=AtCOR47, RD17; full_name=cold-regulated 47; computational_description=cold-regulated 47 (COR47)%3B CONTAINS InterPro DOMAIN/s: Dehydrin (InterPro:IPR000167)%3B BEST Arabidopsis thaliana protein match is: Dehydrin family protein (TAIR:AT1G20450.1)%3B Has 14264 Blast hits to 8754 proteins in 735 species: Archae - 48%3B Bacteria - 976%3B Metazoa - 4799%3B Fungi - 1094%3B Plants - 2502%3B Viruses - 117%3B Other Eukaryotes - 4728 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10872217, PMID:10205894, PMID:9668134, PMID:7579189, PMID:7948863, PMID:1731964, PMID:11049741, PMID:11779861, PMID:11230576, PMID:11292073, PMID:11340187, PMID:11549764, PMID:12084824, PMID:16258011, PMID:16487487, PMID:16565295, PMID:16523692, PMID:16807682, PMID:16949955, PMID:17031511, PMID:17407531, PMID:18093929, PMID:18650403, PMID:18612099, PMID:18849483, PMID:19000195, PMID:19544047, PMID:19656045, PMID:19995345, PMID:20107029, PMID:20358223, PMID:20487379, PMID:20566565, PMID:20561255, PMID:21447070, PMID:21471455, PMID:21696534, PMID:21901277, PMID:22582100, PMID:22573619, PMID:22705253, PMID:24676855, PMID:25005920, PMID:25482793, PMID:25643917, locus:2034376; locus_type=protein_coding
AT1G20450.1	chr1:007088235	0.0	C/7088235-7088687,7088778-7089107	AT1G20450.1 CDS AT1G20450 ID=AT1G20450.1; Parent=AT1G20450; Name=AT1G20450.1; Note=Dehydrin family protein; curator_summary=Encodes a gene induced by low temperature and dehydration. Inhibits e.coli growth while overexpressed. Belongs to the dehydrin protein family%2C which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences%2C the K-%2C S-%2C Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer cold tolerance. Localized to membranes and cytoplasm.; conf_class=2; symbol=ERD10; Alias=LTI29, LOW TEMPERATURE INDUCED 29, LTI45, LOW TEMPERATURE INDUCED 45; full_name=EARLY RESPONSIVE TO DEHYDRATION 10; computational_description=EARLY RESPONSIVE TO DEHYDRATION 10 (ERD10)%3B CONTAINS InterPro DOMAIN/s: Dehydrin (InterPro:IPR000167)%3B BEST Arabidopsis thaliana protein match is: cold-regulated 47 (TAIR:AT1G20440.1)%3B Has 8140 Blast hits to 5021 proteins in 461 species: Archae - 16%3B Bacteria - 327%3B Metazoa - 2363%3B Fungi - 375%3B Plants - 2004%3B Viruses - 65%3B Other Eukaryotes - 2990 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:7579189, PMID:7948863, PMID:8075396, PMID:8069491, PMID:11049741, PMID:11292073, PMID:12785063, PMID:14509836, PMID:14535880, PMID:15356392, PMID:16487487, PMID:16574749, PMID:16565295, PMID:17031511, PMID:17010111, PMID:18093929, PMID:18089556, PMID:18359842, PMID:18650403, PMID:19000195, PMID:18761701, PMID:20054552, PMID:23289948, PMID:23517122, PMID:22325890, PMID:25005920, PMID:25450686, locus:2034369; locus_type=protein_coding
AT1G20450.2	chr1:007088235	0.0	C/7088235-7088674,7088768-7089107	AT1G20450.2 CDS AT1G20450 ID=AT1G20450.2; Parent=AT1G20450; Name=AT1G20450.2; Note=Dehydrin family protein; curator_summary=Encodes a gene induced by low temperature and dehydration. Inhibits e.coli growth while overexpressed. Belongs to the dehydrin protein family%2C which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences%2C the K-%2C S-%2C Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer cold tolerance. Localized to membranes and cytoplasm.; conf_class=2; symbol=ERD10; Alias=LTI29, LOW TEMPERATURE INDUCED 29, LTI45, LOW TEMPERATURE INDUCED 45; full_name=EARLY RESPONSIVE TO DEHYDRATION 10; computational_description=EARLY RESPONSIVE TO DEHYDRATION 10 (ERD10)%3B CONTAINS InterPro DOMAIN/s: Dehydrin (InterPro:IPR000167)%3B BEST Arabidopsis thaliana protein match is: cold-regulated 47 (TAIR:AT1G20440.1)%3B Has 8140 Blast hits to 5021 proteins in 461 species: Archae - 16%3B Bacteria - 327%3B Metazoa - 2363%3B Fungi - 375%3B Plants - 2004%3B Viruses - 65%3B Other Eukaryotes - 2990 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:7579189, PMID:7948863, PMID:8075396, PMID:8069491, PMID:11049741, PMID:11292073, PMID:12785063, PMID:14509836, PMID:14535880, PMID:15356392, PMID:16487487, PMID:16574749, PMID:16565295, PMID:17031511, PMID:17010111, PMID:18093929, PMID:18089556, PMID:18359842, PMID:18650403, PMID:19000195, PMID:18761701, PMID:20054552, PMID:23289948, PMID:23517122, PMID:22325890, PMID:25005920, PMID:25450686, locus:2034369; locus_type=protein_coding
AT1G20460.1	chr1:007091505	0.0	W/7091505-7091617,7092786-7092993	AT1G20460.1 CDS AT1G20460 ID=AT1G20460.1; Parent=AT1G20460; Name=AT1G20460.1; Note=NADH-ubiquinone oxidoreductase chain; conf_class=1; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76185.1)%3B Has 37 Blast hits to 37 proteins in 11 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 37%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:2034362; locus_type=protein_coding
AT1G05553.1	chr1:007093113	0.0	C/7093113-7093593	AT1G05553.1 lnc_RNA AT1G05553 ID=AT1G05553.1; Parent=AT1G05553; Name=AT1G05553.1; locus_type=long_noncoding_rna
AT1G05557.1	chr1:007094008	0.0	C/7094008-7094666	AT1G05557.1 antisense_lncRNA AT1G05557 ID=AT1G05557.1; Parent=AT1G05557; Name=AT1G05557.1; description=Natural antisense transcript overlaps with AT1G20470; Note=Natural antisense transcript overlaps with AT1G20470; locus_type=antisense_long_noncoding_rna
AT1G20470.1	chr1:007094325	0.0	W/7094325-7094765	AT1G20470.1 CDS AT1G20470 ID=AT1G20470.1; Parent=AT1G20470; Name=AT1G20470.1; Note=SAUR-like auxin-responsive protein family; conf_class=1; Alias=SAUR60, SMALL AUXIN UPREGULATED RNA 60; computational_description=SAUR-like auxin-responsive protein family %3B CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676)%3B BEST Arabidopsis thaliana protein match is: SAUR-like auxin-responsive protein family (TAIR:AT1G76190.1)%3B Has 1315 Blast hits to 1299 proteins in 26 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1314%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:2034351; locus_type=protein_coding
AT1G20480.1	chr1:007094978	0.0	C/7094978-7095091,7095187-7095289,7095396-7095463,7095567-7095712,7095807-7097073	AT1G20480.1 CDS AT1G20480 ID=AT1G20480.1; Parent=AT1G20480; Name=AT1G20480.1; Note=AMP-dependent synthetase and ligase family protein; conf_class=2; computational_description=AMP-dependent synthetase and ligase family protein%3B FUNCTIONS IN: 4-coumarate-CoA ligase activity%3B INVOLVED IN: phenylpropanoid metabolic process%2C metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: sperm cell%3B CONTAINS InterPro DOMAIN/s: AMP-binding%2C conserved site (InterPro:IPR020845)%2C AMP-dependent synthetase/ligase (InterPro:IPR000873)%3B BEST Arabidopsis thaliana protein match is: OPC-8:0 CoA ligase1 (TAIR:AT1G20510.1)%3B Has 83252 Blast hits to 75672 proteins in 3756 species: Archae - 1173%3B Bacteria - 54045%3B Metazoa - 3530%3B Fungi - 4633%3B Plants - 2807%3B Viruses - 1%3B Other Eukaryotes - 17063 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12805634, PMID:14568076, PMID:14612585, PMID:15677481, PMID:15878986, PMID:16963437, PMID:18931141, locus:2034423; locus_type=protein_coding
AT1G20490.1	chr1:007097958	0.0	C/7097958-7098073,7098445-7099672	AT1G20490.1 CDS AT1G20490 ID=AT1G20490.1; Parent=AT1G20490; Name=AT1G20490.1; Note=AMP-dependent synthetase and ligase family protein; conf_class=2; computational_description=AMP-dependent synthetase and ligase family protein%3B FUNCTIONS IN: 4-coumarate-CoA ligase activity%3B INVOLVED IN: phenylpropanoid metabolic process%2C metabolic process%3B EXPRESSED IN: 15 plant structures%3B EXPRESSED DURING: 4 anthesis%2C C globular stage%2C petal differentiation and expansion stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: AMP-binding%2C conserved site (InterPro:IPR020845)%2C AMP-dependent synthetase/ligase (InterPro:IPR000873)%3B BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT1G20500.1)%3B Has 66005 Blast hits to 61269 proteins in 3543 species: Archae - 1113%3B Bacteria - 45325%3B Metazoa - 2980%3B Fungi - 3725%3B Plants - 2277%3B Viruses - 1%3B Other Eukaryotes - 10584 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12372144, PMID:12805634, PMID:14568076, PMID:14612585, PMID:15677481, PMID:15807784, PMID:15878986, PMID:15937229, PMID:16998091, PMID:16963437, PMID:20736450, locus:2034413; locus_type=protein_coding
AT1G20490.2	chr1:007097958	0.0	C/7097958-7098073,7098445-7099672	AT1G20490.2 CDS AT1G20490 ID=AT1G20490.2; Parent=AT1G20490; Name=AT1G20490.2; Note=AMP-dependent synthetase and ligase family protein; computational_description=AMP-dependent synthetase and ligase family protein%3B FUNCTIONS IN: 4-coumarate-CoA ligase activity%3B INVOLVED IN: phenylpropanoid metabolic process%2C metabolic process%3B EXPRESSED IN: 15 plant structures%3B EXPRESSED DURING: 4 anthesis%2C C globular stage%2C petal differentiation and expansion stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: AMP-binding%2C conserved site (InterPro:IPR020845)%2C AMP-dependent synthetase/ligase (InterPro:IPR000873)%3B BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT1G20500.1)%3B Has 66005 Blast hits to 61269 proteins in 3543 species: Archae - 1113%3B Bacteria - 45325%3B Metazoa - 2980%3B Fungi - 3725%3B Plants - 2277%3B Viruses - 1%3B Other Eukaryotes - 10584 (source: NCBI BLink).; Dbxref=PMID:12372144, PMID:12805634, PMID:14568076, PMID:14612585, PMID:15677481, PMID:15807784, PMID:15878986, PMID:15937229, PMID:16998091, PMID:16963437, PMID:20736450, locus:2034413; locus_type=protein_coding
AT1G20500.1	chr1:007100502	0.0	C/7100502-7100615,7100733-7100835,7100951-7101018,7101103-7101248,7101626-7102847	AT1G20500.1 CDS AT1G20500 ID=AT1G20500.1; Parent=AT1G20500; Name=AT1G20500.1; Note=AMP-dependent synthetase and ligase family protein; conf_class=2; computational_description=AMP-dependent synthetase and ligase family protein%3B FUNCTIONS IN: 4-coumarate-CoA ligase activity%3B INVOLVED IN: phenylpropanoid metabolic process%2C metabolic process%3B CONTAINS InterPro DOMAIN/s: AMP-binding%2C conserved site (InterPro:IPR020845)%2C AMP-dependent synthetase/ligase (InterPro:IPR000873)%3B BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT5G38120.1)%3B Has 82776 Blast hits to 75503 proteins in 3739 species: Archae - 1179%3B Bacteria - 53477%3B Metazoa - 3434%3B Fungi - 4583%3B Plants - 2754%3B Viruses - 1%3B Other Eukaryotes - 17348 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12819348, PMID:12805634, PMID:14576160, PMID:14568076, PMID:14612585, PMID:15677481, PMID:15878986, PMID:16998091, PMID:16963437, locus:2034403; locus_type=protein_coding
AT1G20510.1	chr1:007103645	0.0	C/7103645-7103867,7103943-7104010,7104419-7104564,7104653-7105856	AT1G20510.1 CDS AT1G20510 ID=AT1G20510.1; Parent=AT1G20510; Name=AT1G20510.1; Note=OPC-8:0 CoA ligase1; conf_class=2; symbol=OPCL1; full_name=OPC-8:0 CoA ligase1; computational_description=OPC-8:0 CoA ligase1 (OPCL1)%3B FUNCTIONS IN: 4-coumarate-CoA ligase activity%3B INVOLVED IN: phenylpropanoid metabolic process%2C jasmonic acid biosynthetic process%2C response to wounding%3B LOCATED IN: peroxisome%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: AMP-binding%2C conserved site (InterPro:IPR020845)%2C AMP-dependent synthetase/ligase (InterPro:IPR000873)%3B BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT1G20500.1)%3B Has 85702 Blast hits to 78184 proteins in 3819 species: Archae - 1213%3B Bacteria - 55131%3B Metazoa - 3605%3B Fungi - 4761%3B Plants - 2762%3B Viruses - 1%3B Other Eukaryotes - 18229 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12372144, PMID:12805634, PMID:14576160, PMID:14568076, PMID:14612585, PMID:14769935, PMID:15677481, PMID:15878986, PMID:16099486, PMID:16553894, PMID:16963437, PMID:17254327, PMID:17337630, PMID:17587374, PMID:17675405, PMID:17951448, PMID:18252252, PMID:18400103, PMID:18805951, PMID:18931141, PMID:19704801, PMID:21228101, locus:2034392; locus_type=protein_coding
AT1G20510.2	chr1:007103939	0.0	C/7103939-7104010,7104419-7104564,7104653-7105856	AT1G20510.2 CDS AT1G20510 ID=AT1G20510.2; Parent=AT1G20510; Name=AT1G20510.2; Note=OPC-8:0 CoA ligase1; conf_class=2; symbol=OPCL1; full_name=OPC-8:0 CoA ligase1; computational_description=OPC-8:0 CoA ligase1 (OPCL1)%3B FUNCTIONS IN: 4-coumarate-CoA ligase activity%3B INVOLVED IN: phenylpropanoid metabolic process%2C jasmonic acid biosynthetic process%2C response to wounding%3B LOCATED IN: peroxisome%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: AMP-binding%2C conserved site (InterPro:IPR020845)%2C AMP-dependent synthetase/ligase (InterPro:IPR000873)%3B BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT1G20500.1)%3B Has 85702 Blast hits to 78184 proteins in 3819 species: Archae - 1213%3B Bacteria - 55131%3B Metazoa - 3605%3B Fungi - 4761%3B Plants - 2762%3B Viruses - 1%3B Other Eukaryotes - 18229 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12372144, PMID:12805634, PMID:14576160, PMID:14568076, PMID:14612585, PMID:14769935, PMID:15677481, PMID:15878986, PMID:16099486, PMID:16553894, PMID:16963437, PMID:17254327, PMID:17337630, PMID:17587374, PMID:17675405, PMID:17951448, PMID:18252252, PMID:18400103, PMID:18805951, PMID:18931141, PMID:19704801, PMID:21228101, locus:2034392; locus_type=protein_coding
AT1G20510.3	chr1:007104362	0.0	C/7104362-7104564,7104653-7105856	AT1G20510.3 CDS AT1G20510 ID=AT1G20510.3; Parent=AT1G20510; Name=AT1G20510.3; Note=OPC-8:0 CoA ligase1; symbol=OPCL1; full_name=OPC-8:0 CoA ligase1; computational_description=OPC-8:0 CoA ligase1 (OPCL1)%3B FUNCTIONS IN: 4-coumarate-CoA ligase activity%3B INVOLVED IN: phenylpropanoid metabolic process%2C jasmonic acid biosynthetic process%2C response to wounding%3B LOCATED IN: peroxisome%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: AMP-binding%2C conserved site (InterPro:IPR020845)%2C AMP-dependent synthetase/ligase (InterPro:IPR000873)%3B BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT1G20500.1)%3B Has 85702 Blast hits to 78184 proteins in 3819 species: Archae - 1213%3B Bacteria - 55131%3B Metazoa - 3605%3B Fungi - 4761%3B Plants - 2762%3B Viruses - 1%3B Other Eukaryotes - 18229 (source: NCBI BLink).; Dbxref=PMID:12372144, PMID:12805634, PMID:14576160, PMID:14568076, PMID:14612585, PMID:14769935, PMID:15677481, PMID:15878986, PMID:16099486, PMID:16553894, PMID:16963437, PMID:17254327, PMID:17337630, PMID:17587374, PMID:17675405, PMID:17951448, PMID:18252252, PMID:18400103, PMID:18805951, PMID:18931141, PMID:19704801, PMID:21228101, locus:2034392; locus_type=protein_coding
AT1G20515.1	chr1:007106128	0.0	W/7106128-7108108	AT1G20515.1 antisense_lncRNA AT1G20515 ID=AT1G20515.1; Parent=AT1G20515; curator_summary=Potential natural antisense gene%2C locus overlaps with AT1G20520; Dbxref=locus:4010713457; Name=AT1G20515.1; description=Natural antisense transcript overlaps with AT1G20520; Note=Natural antisense transcript overlaps with AT1G20520; locus_type=antisense_long_noncoding_rna
AT1G20515.2	chr1:007106144	0.0	W/7106144-7107966	AT1G20515.2 antisense_lncRNA AT1G20515 ID=AT1G20515.2; Parent=AT1G20515; Name=AT1G20515.2; description=Natural antisense transcript overlaps with AT1G20520; curator_summary=Potential natural antisense gene%2C locus overlaps with AT1G20520; Note=Natural antisense transcript overlaps with AT1G20520; Dbxref=locus:4010713457; locus_type=antisense_long_noncoding_rna
AT1G20515.3	chr1:007106832	0.0	W/7106832-7107937	AT1G20515.3 antisense_lncRNA AT1G20515 ID=AT1G20515.3; Parent=AT1G20515; Name=AT1G20515.3; description=Natural antisense transcript overlaps with AT1G20520; curator_summary=Potential natural antisense gene%2C locus overlaps with AT1G20520; Note=Natural antisense transcript overlaps with AT1G20520; Dbxref=locus:4010713457; locus_type=antisense_long_noncoding_rna
AT1G20520.1	chr1:007106922	0.0	C/7106922-7107617	AT1G20520.1 CDS AT1G20520 ID=AT1G20520.1; Parent=AT1G20520; Name=AT1G20520.1; Note=DUF241 domain protein%2C putative (DUF241); conf_class=1; computational_description=Arabidopsis protein of unknown function (DUF241)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF241%2C plant (InterPro:IPR004320)%3B BEST Arabidopsis thaliana protein match is: Arabidopsis protein of unknown function (DUF241) (TAIR:AT1G76210.1)%3B Has 416 Blast hits to 408 proteins in 12 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 416%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:2034381; locus_type=protein_coding
AT1G20530.1	chr1:007108370	0.0	C/7108370-7109009,7109088-7109311,7109397-7110377	AT1G20530.1 CDS AT1G20530 ID=AT1G20530.1; Parent=AT1G20530; Name=AT1G20530.1; Note=girdin (DUF630 and DUF632); conf_class=2; computational_description=Protein of unknown function (DUF630 and DUF632)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: N-terminal protein myristoylation%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: shoot apex%2C embryo%2C flower%3B EXPRESSED DURING: petal differentiation and expansion stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF630 (InterPro:IPR006868)%2C Protein of unknown function DUF632 (InterPro:IPR006867)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF630 and DUF632) (TAIR:AT2G17110.1)%3B Has 3752 Blast hits to 2914 proteins in 298 species: Archae - 59%3B Bacteria - 209%3B Metazoa - 1260%3B Fungi - 213%3B Plants - 622%3B Viruses - 0%3B Other Eukaryotes - 1389 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12912986, locus:2030382; locus_type=protein_coding
AT1G20540.1	chr1:007112652	0.0	W/7112652-7112696,7112772-7112855,7112955-7113087,7113195-7113306,7113439-7113538,7113645-7113772,7113952-7114021,7114225-7114313,7114416-7114461,7114672-7114745,7114835-7114908,7114990-7115048,7115150-7115191	AT1G20540.1 CDS AT1G20540 ID=AT1G20540.1; Parent=AT1G20540; Name=AT1G20540.1; Note=Transducin/WD40 repeat-like superfamily protein; conf_class=2; computational_description=Transducin/WD40 repeat-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782)%2C WD40 repeat-like-containing domain (InterPro:IPR011046)%2C WD40-repeat-containing domain (InterPro:IPR017986)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C WD40 repeat (InterPro:IPR001680)%2C WD40 repeat%2C subgroup (InterPro:IPR019781)%3B BEST Arabidopsis thaliana protein match is: DWD (DDB1-binding WD40 protein) hypersensitive to ABA 2 (TAIR:AT1G76260.1)%3B Has 8926 Blast hits to 7393 proteins in 418 species: Archae - 0%3B Bacteria - 876%3B Metazoa - 3687%3B Fungi - 2097%3B Plants - 1353%3B Viruses - 0%3B Other Eukaryotes - 913 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:14701923, PMID:18223036, PMID:18552200, PMID:18775970, locus:2030387; locus_type=protein_coding
AT1G20550.1	chr1:007115485	0.0	C/7115485-7115908,7116009-7116340,7116414-7116698,7116817-7117000,7117084-7117172,7117266-7117342,7117461-7117551,7117638-7117700,7117787-7117936	AT1G20550.1 CDS AT1G20550 ID=AT1G20550.1; Parent=AT1G20550; Name=AT1G20550.1; Note=O-fucosyltransferase family protein; conf_class=2; computational_description=O-fucosyltransferase family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 10 growth stages%3B CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378)%3B BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT1G76270.1)%3B Has 868 Blast hits to 809 proteins in 28 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 868%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, PMID:20736450, locus:2030392; locus_type=protein_coding
AT1G20560.1	chr1:007119927	0.0	C/7119927-7121393,7121527-7121730	AT1G20560.1 CDS AT1G20560 ID=AT1G20560.1; Parent=AT1G20560; Name=AT1G20560.1; Note=acyl activating enzyme 1; conf_class=2; symbol=AAE1; full_name=acyl activating enzyme 1; computational_description=acyl activating enzyme 1 (AAE1)%3B FUNCTIONS IN: AMP binding%3B INVOLVED IN: metabolic process%3B LOCATED IN: peroxisome%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: AMP-binding%2C conserved site (InterPro:IPR020845)%2C AMP-dependent synthetase/ligase (InterPro:IPR000873)%3B BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT2G17650.1)%3B Has 77741 Blast hits to 70781 proteins in 3571 species: Archae - 1189%3B Bacteria - 50806%3B Metazoa - 3349%3B Fungi - 3424%3B Plants - 2387%3B Viruses - 1%3B Other Eukaryotes - 16585 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12805634, PMID:17651367, PMID:18931141, PMID:19043666, PMID:19329564, PMID:25253886, locus:2030407; locus_type=protein_coding
AT1G20560.2	chr1:007119927	0.0	C/7119927-7121363	AT1G20560.2 CDS AT1G20560 ID=AT1G20560.2; Parent=AT1G20560; Name=AT1G20560.2; Note=acyl activating enzyme 1; conf_class=2; symbol=AAE1; full_name=acyl activating enzyme 1; computational_description=acyl activating enzyme 1 (AAE1)%3B FUNCTIONS IN: AMP binding%3B INVOLVED IN: metabolic process%3B LOCATED IN: peroxisome%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: AMP-binding%2C conserved site (InterPro:IPR020845)%2C AMP-dependent synthetase/ligase (InterPro:IPR000873)%3B BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT2G17650.1)%3B Has 77741 Blast hits to 70781 proteins in 3571 species: Archae - 1189%3B Bacteria - 50806%3B Metazoa - 3349%3B Fungi - 3424%3B Plants - 2387%3B Viruses - 1%3B Other Eukaryotes - 16585 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12805634, PMID:17651367, PMID:18931141, PMID:19043666, PMID:19329564, PMID:25253886, locus:2030407; locus_type=protein_coding
AT1G20570.1	chr1:007122018	0.0	C/7122018-7122140,7122219-7122392,7122474-7122605,7122736-7122834,7123005-7123055,7123154-7123210,7123312-7123506,7123674-7123768,7123845-7123944,7124029-7124181,7124283-7125266,7125433-7125543,7125626-7125797,7125896-7125983,7126085-7126349,7126428-7126559	AT1G20570.1 CDS AT1G20570 ID=AT1G20570.1; Parent=AT1G20570; Name=AT1G20570.1; Note=Spc97 / Spc98 family of spindle pole body (SBP) component; conf_class=6; computational_description=Spc97 / Spc98 family of spindle pole body (SBP) component%3B FUNCTIONS IN: transferase activity%2C transferring glycosyl groups%2C tubulin binding%3B INVOLVED IN: microtubule cytoskeleton organization%3B LOCATED IN: spindle pole%2C microtubule organizing center%3B CONTAINS InterPro DOMAIN/s: Spc97/Spc98 (InterPro:IPR007259)%3B BEST Arabidopsis thaliana protein match is: Spc97 / Spc98 family of spindle pole body (SBP) component (TAIR:AT1G80260.1)%3B Has 1016 Blast hits to 914 proteins in 149 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 582%3B Fungi - 173%3B Plants - 165%3B Viruses - 0%3B Other Eukaryotes - 96 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:20736450, locus:2030417; locus_type=protein_coding
AT1G20570.2	chr1:007122018	0.0	C/7122018-7122140,7122219-7122392,7122474-7122605,7122736-7122834,7123005-7123076,7123154-7123210,7123312-7123506,7123674-7123768,7123845-7123944,7124029-7124181,7124283-7125266,7125433-7125543,7125626-7125797,7125896-7125983,7126085-7126349,7126428-7126559	AT1G20570.2 CDS AT1G20570 ID=AT1G20570.2; Parent=AT1G20570; Name=AT1G20570.2; Note=Spc97 / Spc98 family of spindle pole body (SBP) component; computational_description=Spc97 / Spc98 family of spindle pole body (SBP) component%3B FUNCTIONS IN: transferase activity%2C transferring glycosyl groups%2C tubulin binding%3B INVOLVED IN: microtubule cytoskeleton organization%3B LOCATED IN: spindle pole%2C microtubule organizing center%3B CONTAINS InterPro DOMAIN/s: Spc97/Spc98 (InterPro:IPR007259)%3B BEST Arabidopsis thaliana protein match is: Spc97 / Spc98 family of spindle pole body (SBP) component (TAIR:AT1G80260.1)%3B Has 1016 Blast hits to 914 proteins in 149 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 582%3B Fungi - 173%3B Plants - 165%3B Viruses - 0%3B Other Eukaryotes - 96 (source: NCBI BLink).; Dbxref=PMID:20736450, locus:2030417; locus_type=protein_coding
AT1G20570.3	chr1:007122018	0.0	C/7122018-7122140,7122219-7122392,7122474-7122605,7122736-7122834,7123005-7123076,7123154-7123210,7123312-7123506,7123674-7123768,7123845-7123944,7124029-7124181,7124283-7125266,7125433-7125543,7125626-7125797,7125896-7125993,7126089-7126349,7126428-7126559	AT1G20570.3 CDS AT1G20570 ID=AT1G20570.3; Parent=AT1G20570; Name=AT1G20570.3; Note=Spc97 / Spc98 family of spindle pole body (SBP) component; computational_description=Spc97 / Spc98 family of spindle pole body (SBP) component%3B FUNCTIONS IN: transferase activity%2C transferring glycosyl groups%2C tubulin binding%3B INVOLVED IN: microtubule cytoskeleton organization%3B LOCATED IN: spindle pole%2C microtubule organizing center%3B CONTAINS InterPro DOMAIN/s: Spc97/Spc98 (InterPro:IPR007259)%3B BEST Arabidopsis thaliana protein match is: Spc97 / Spc98 family of spindle pole body (SBP) component (TAIR:AT1G80260.1)%3B Has 1016 Blast hits to 914 proteins in 149 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 582%3B Fungi - 173%3B Plants - 165%3B Viruses - 0%3B Other Eukaryotes - 96 (source: NCBI BLink).; Dbxref=PMID:20736450, locus:2030417; locus_type=protein_coding
AT1G20570.4	chr1:007123433	0.0	C/7123433-7123435,7123674-7123768,7123845-7123944,7124029-7124181,7124283-7125266,7125433-7125543,7125626-7125797,7125896-7125983,7126085-7126349,7126428-7126559	AT1G20570.4 CDS AT1G20570 ID=AT1G20570.4; Parent=AT1G20570; Name=AT1G20570.4; Note=Spc97 / Spc98 family of spindle pole body (SBP) component; computational_description=Spc97 / Spc98 family of spindle pole body (SBP) component%3B FUNCTIONS IN: transferase activity%2C transferring glycosyl groups%2C tubulin binding%3B INVOLVED IN: microtubule cytoskeleton organization%3B LOCATED IN: spindle pole%2C microtubule organizing center%3B CONTAINS InterPro DOMAIN/s: Spc97/Spc98 (InterPro:IPR007259)%3B BEST Arabidopsis thaliana protein match is: Spc97 / Spc98 family of spindle pole body (SBP) component (TAIR:AT1G80260.1)%3B Has 1016 Blast hits to 914 proteins in 149 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 582%3B Fungi - 173%3B Plants - 165%3B Viruses - 0%3B Other Eukaryotes - 96 (source: NCBI BLink).; Dbxref=PMID:20736450, locus:2030417; locus_type=protein_coding
AT1TE23040	chr1:007125860	0.0	C/7125860-7125994	AT1TE23040 transposable_element AT1TE23040 ID=AT1TE23040; Name=AT1TE23040; Alias=ATDNA1T9A
AT1G20575.1	chr1:007126987	0.0	C/7126987-7127091,7127189-7127303,7127391-7127555,7127646-7127671,7127748-7127824,7127906-7127939,7128034-7128133,7128559-7128677	AT1G20575.1 CDS AT1G20575 ID=AT1G20575.1; Parent=AT1G20575; Name=AT1G20575.1; Note=Nucleotide-diphospho-sugar transferases superfamily protein; curator_summary=Encodes the catalytic core of the dolichol phosphate mannase synthase (DPMS) complex. It is not active on its own but requires the presence of DPMS2 and DPMS3 for full activity. It is localized in the ER and mediates isoprenyl-linked glycan biogenesis%2C in%26#64258%3Buences development%2C stress response%2C and ammonium hypersensitivity.; conf_class=1; symbol=DPMS1; full_name=dolichol phosphate mannose synthase 1; computational_description=Nucleotide-diphospho-sugar transferases superfamily protein%3B CONTAINS InterPro DOMAIN/s: Glycosyl transferase%2C family 2 (InterPro:IPR001173)%3B BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferases superfamily protein (TAIR:AT2G39630.1)%3B Has 22705 Blast hits to 22656 proteins in 2589 species: Archae - 933%3B Bacteria - 16103%3B Metazoa - 288%3B Fungi - 260%3B Plants - 98%3B Viruses - 23%3B Other Eukaryotes - 5000 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:18650403, PMID:18775970, PMID:21558543, locus:505006134; locus_type=protein_coding
AT1G20580.1	chr1:007128979	0.0	W/7128979-7129137,7129779-7129831,7129925-7129991,7130088-7130141,7130309-7130371	AT1G20580.1 CDS AT1G20580 ID=AT1G20580.1; Parent=AT1G20580; Name=AT1G20580.1; Note=Small nuclear ribonucleoprotein family protein; conf_class=2; computational_description=Small nuclear ribonucleoprotein family protein%3B FUNCTIONS IN: molecular_function unknown%3B LOCATED IN: nucleolus%2C nucleus%2C small nucleolar ribonucleoprotein complex%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163)%2C Like-Sm ribonucleoprotein (LSM) domain%2C eukaryotic/archaea-type (InterPro:IPR006649)%2C Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920)%3B BEST Arabidopsis thaliana protein match is: snRNP core protein SMD3 (TAIR:AT1G76300.1)%3B Has 1253 Blast hits to 1253 proteins in 229 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 480%3B Fungi - 336%3B Plants - 223%3B Viruses - 0%3B Other Eukaryotes - 214 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16776300, PMID:18650403, PMID:20736450, PMID:21142222, locus:2030442; locus_type=protein_coding
AT1G20590.1	chr1:007131166	0.0	C/7131166-7131322,7131416-7131594,7131693-7131791,7131878-7132069,7132295-7132465	AT1G20590.1 CDS AT1G20590 ID=AT1G20590.1; Parent=AT1G20590; Name=AT1G20590.1; Note=cyclin; conf_class=6; computational_description=Cyclin family protein%3B FUNCTIONS IN: cyclin-dependent protein kinase regulator activity%3B INVOLVED IN: regulation of cell cycle%3B LOCATED IN: endomembrane system%2C nucleus%3B EXPRESSED IN: male gametophyte%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%3B CONTAINS InterPro DOMAIN/s: Cyclin%2C C-terminal (InterPro:IPR004367)%2C Cyclin-like (InterPro:IPR011028)%2C Cyclin-related (InterPro:IPR013763)%2C Cyclin%2C N-terminal (InterPro:IPR006671)%2C Cyclin%2C A/B/D/E (InterPro:IPR014400)%2C Cyclin (InterPro:IPR006670)%3B BEST Arabidopsis thaliana protein match is: Cyclin B2%3B3 (TAIR:AT1G20610.1)%3B Has 3281 Blast hits to 3278 proteins in 328 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1609%3B Fungi - 468%3B Plants - 793%3B Viruses - 0%3B Other Eukaryotes - 411 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:15208425, PMID:16243906, PMID:16489130, PMID:17329565, PMID:18775970, PMID:20736450, PMID:20706207, locus:2030457; locus_type=protein_coding
AT1TE23060	chr1:007132308	0.0	C/7132308-7132353	AT1TE23060 transposable_element AT1TE23060 ID=AT1TE23060; Name=AT1TE23060; Alias=ATREP8
AT1TE23065	chr1:007132354	0.0	C/7132354-7132972	AT1TE23065 transposable_element AT1TE23065 ID=AT1TE23065; Name=AT1TE23065; Alias=ATREP7
AT1TE23070	chr1:007132973	0.0	W/7132973-7133048	AT1TE23070 transposable_element AT1TE23070 ID=AT1TE23070; Name=AT1TE23070; Alias=ATREP19
AT1G20600.1	chr1:007133111	0.0	W/7133111-7133752,7134166-7134237	AT1G20600.1 CDS AT1G20600 ID=AT1G20600.1; Parent=AT1G20600; Name=AT1G20600.1; Note=AP2/B3-like transcriptional factor family protein; conf_class=8; computational_description=AP2/B3-like transcriptional factor family protein%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B LOCATED IN: membrane%3B EXPRESSED IN: leaf%3B CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340)%3B BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT4G03170.1)%3B Has 77 Blast hits to 77 proteins in 17 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 7%3B Fungi - 0%3B Plants - 64%3B Viruses - 0%3B Other Eukaryotes - 6 (source: NCBI BLink).; conf_rating=*; Dbxref=PMID:25002525, locus:2030477; locus_type=protein_coding
AT1G20610.1	chr1:007135073	0.0	C/7135073-7135205,7135289-7135467,7135566-7135664,7135751-7135972,7136063-7136152,7136264-7136398,7136481-7136627,7136710-7136758,7136843-7136890,7136993-7137125,7137219-7137273	AT1G20610.1 CDS AT1G20610 ID=AT1G20610.1; Parent=AT1G20610; Name=AT1G20610.1; Note=Cyclin B2%3B3; conf_class=1; symbol=CYCB2%3B3; full_name=Cyclin B2%3B3; computational_description=Cyclin B2%3B3 (CYCB2%3B3)%3B FUNCTIONS IN: cyclin-dependent protein kinase regulator activity%3B INVOLVED IN: regulation of cell cycle%3B LOCATED IN: nucleus%3B CONTAINS InterPro DOMAIN/s: Cyclin%2C C-terminal (InterPro:IPR004367)%2C Cyclin-like (InterPro:IPR011028)%2C Cyclin-related (InterPro:IPR013763)%2C Cyclin%2C N-terminal (InterPro:IPR006671)%2C Cyclin%2C A/B/D/E (InterPro:IPR014400)%2C Cyclin (InterPro:IPR006670)%3B BEST Arabidopsis thaliana protein match is: CYCLIN B2%3B4 (TAIR:AT1G76310.1)%3B Has 4405 Blast hits to 4396 proteins in 374 species: Archae - 0%3B Bacteria - 7%3B Metazoa - 2039%3B Fungi - 549%3B Plants - 1150%3B Viruses - 30%3B Other Eukaryotes - 630 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11971144, PMID:14660803, PMID:16489130, PMID:16517759, PMID:18923020, PMID:20706207, locus:2030482; locus_type=protein_coding
AT1TE23080	chr1:007138402	0.0	W/7138402-7139137	AT1TE23080 transposable_element AT1TE23080 ID=AT1TE23080; Name=AT1TE23080; Alias=HELITRONY1E
AT1G20620.1	chr1:007143142	0.0	W/7143142-7143156,7144207-7144303,7144459-7144736,7144829-7145605,7145691-7145780,7145880-7146041,7146134-7146193	AT1G20620.1 CDS AT1G20620 ID=AT1G20620.1; Parent=AT1G20620; Name=AT1G20620.1; Note=catalase 3; curator_summary=Catalase%2C catalyzes the breakdown of hydrogen peroxide (H2O2) into water and oxygen.; conf_class=2; symbol=CAT3; Alias=ATCAT3, SEN2, SENESCENCE 2; full_name=catalase 3; computational_description=catalase 3 (CAT3)%3B FUNCTIONS IN: catalase activity%2C cobalt ion binding%3B INVOLVED IN: in 7 processes%3B LOCATED IN: in 11 components%3B EXPRESSED IN: 29 plant structures%3B EXPRESSED DURING: 17 growth stages%3B CONTAINS InterPro DOMAIN/s: Catalase-like domain%2C haem-dependent (InterPro:IPR020835)%2C Catalase related subgroup (InterPro:IPR018028)%2C Catalase (InterPro:IPR002226)%2C Catalase%2C N-terminal (InterPro:IPR011614)%2C Catalase-related immune responsive (InterPro:IPR010582)%3B BEST Arabidopsis thaliana protein match is: catalase 2 (TAIR:AT4G35090.1)%3B Has 6176 Blast hits to 6156 proteins in 1860 species: Archae - 22%3B Bacteria - 4351%3B Metazoa - 678%3B Fungi - 546%3B Plants - 456%3B Viruses - 0%3B Other Eukaryotes - 123 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9617812, PMID:12376630, PMID:12736379, PMID:14581623, PMID:14671022, PMID:15032878, PMID:17587236, PMID:17728292, PMID:17785451, PMID:17951448, PMID:18230142, PMID:18775970, PMID:19500300, PMID:19017119, PMID:20018591, PMID:20031914, PMID:20138775, PMID:20230493, PMID:20442276, PMID:20736450, PMID:20876333, PMID:21622812, PMID:21665324, PMID:21665322, PMID:22525681, PMID:22771435, PMID:23958864, PMID:23940555, PMID:24018686, locus:2034357; locus_type=protein_coding
AT1G20620.2	chr1:007143142	0.0	W/7143142-7143156,7144207-7144303,7144459-7144736,7144829-7145605,7145691-7145807	AT1G20620.2 CDS AT1G20620 ID=AT1G20620.2; Parent=AT1G20620; Name=AT1G20620.2; Note=catalase 3; curator_summary=Catalase%2C catalyzes the breakdown of hydrogen peroxide (H2O2) into water and oxygen.; conf_class=2; symbol=CAT3; Alias=ATCAT3, SEN2, SENESCENCE 2; full_name=catalase 3; computational_description=catalase 3 (CAT3)%3B FUNCTIONS IN: catalase activity%2C cobalt ion binding%3B INVOLVED IN: in 7 processes%3B LOCATED IN: in 11 components%3B EXPRESSED IN: 29 plant structures%3B EXPRESSED DURING: 17 growth stages%3B CONTAINS InterPro DOMAIN/s: Catalase-like domain%2C haem-dependent (InterPro:IPR020835)%2C Catalase related subgroup (InterPro:IPR018028)%2C Catalase (InterPro:IPR002226)%2C Catalase%2C N-terminal (InterPro:IPR011614)%2C Catalase-related immune responsive (InterPro:IPR010582)%3B BEST Arabidopsis thaliana protein match is: catalase 2 (TAIR:AT4G35090.1)%3B Has 6176 Blast hits to 6156 proteins in 1860 species: Archae - 22%3B Bacteria - 4351%3B Metazoa - 678%3B Fungi - 546%3B Plants - 456%3B Viruses - 0%3B Other Eukaryotes - 123 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9617812, PMID:12376630, PMID:12736379, PMID:14581623, PMID:14671022, PMID:15032878, PMID:17587236, PMID:17728292, PMID:17785451, PMID:17951448, PMID:18230142, PMID:18775970, PMID:19500300, PMID:19017119, PMID:20018591, PMID:20031914, PMID:20138775, PMID:20230493, PMID:20442276, PMID:20736450, PMID:20876333, PMID:21622812, PMID:21665324, PMID:21665322, PMID:22525681, PMID:22771435, PMID:23958864, PMID:23940555, PMID:24018686, locus:2034357; locus_type=protein_coding
AT1G20620.5	chr1:007143142	0.0	W/7143142-7143156,7144207-7144303,7144459-7144736,7144829-7145605,7145691-7145780,7145880-7146041,7146155-7146193	AT1G20620.5 CDS AT1G20620 ID=AT1G20620.5; Parent=AT1G20620; Name=AT1G20620.5; Note=catalase 3; curator_summary=Catalase%2C catalyzes the breakdown of hydrogen peroxide (H2O2) into water and oxygen.; conf_class=2; symbol=CAT3; Alias=ATCAT3, SEN2, SENESCENCE 2; full_name=catalase 3; computational_description=catalase 3 (CAT3)%3B FUNCTIONS IN: catalase activity%2C cobalt ion binding%3B INVOLVED IN: in 7 processes%3B LOCATED IN: in 11 components%3B EXPRESSED IN: 29 plant structures%3B EXPRESSED DURING: 17 growth stages%3B CONTAINS InterPro DOMAIN/s: Catalase-like domain%2C haem-dependent (InterPro:IPR020835)%2C Catalase related subgroup (InterPro:IPR018028)%2C Catalase (InterPro:IPR002226)%2C Catalase%2C N-terminal (InterPro:IPR011614)%2C Catalase-related immune responsive (InterPro:IPR010582)%3B BEST Arabidopsis thaliana protein match is: catalase 2 (TAIR:AT4G35090.1)%3B Has 6176 Blast hits to 6156 proteins in 1860 species: Archae - 22%3B Bacteria - 4351%3B Metazoa - 678%3B Fungi - 546%3B Plants - 456%3B Viruses - 0%3B Other Eukaryotes - 123 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9617812, PMID:12376630, PMID:12736379, PMID:14581623, PMID:14671022, PMID:15032878, PMID:17587236, PMID:17728292, PMID:17785451, PMID:17951448, PMID:18230142, PMID:18775970, PMID:19500300, PMID:19017119, PMID:20018591, PMID:20031914, PMID:20138775, PMID:20230493, PMID:20442276, PMID:20736450, PMID:20876333, PMID:21622812, PMID:21665324, PMID:21665322, PMID:22525681, PMID:22771435, PMID:23958864, PMID:23940555, PMID:24018686, locus:2034357; locus_type=protein_coding
AT1G20620.6	chr1:007143914	0.0	W/7143914-7144105,7144207-7144303,7144459-7144736,7144829-7145605,7145691-7145780,7145880-7146041,7146134-7146193	AT1G20620.6 CDS AT1G20620 ID=AT1G20620.6; Parent=AT1G20620; Name=AT1G20620.6; Note=catalase 3; symbol=CAT3; Alias=ATCAT3, SEN2, SENESCENCE 2; full_name=catalase 3; curator_summary=Catalase%2C catalyzes the breakdown of hydrogen peroxide (H2O2) into water and oxygen.; computational_description=catalase 3 (CAT3)%3B FUNCTIONS IN: catalase activity%2C cobalt ion binding%3B INVOLVED IN: in 7 processes%3B LOCATED IN: in 11 components%3B EXPRESSED IN: 29 plant structures%3B EXPRESSED DURING: 17 growth stages%3B CONTAINS InterPro DOMAIN/s: Catalase-like domain%2C haem-dependent (InterPro:IPR020835)%2C Catalase related subgroup (InterPro:IPR018028)%2C Catalase (InterPro:IPR002226)%2C Catalase%2C N-terminal (InterPro:IPR011614)%2C Catalase-related immune responsive (InterPro:IPR010582)%3B BEST Arabidopsis thaliana protein match is: catalase 2 (TAIR:AT4G35090.1)%3B Has 6176 Blast hits to 6156 proteins in 1860 species: Archae - 22%3B Bacteria - 4351%3B Metazoa - 678%3B Fungi - 546%3B Plants - 456%3B Viruses - 0%3B Other Eukaryotes - 123 (source: NCBI BLink).; Dbxref=PMID:9617812, PMID:12376630, PMID:12736379, PMID:14581623, PMID:14671022, PMID:15032878, PMID:17587236, PMID:17728292, PMID:17785451, PMID:17951448, PMID:18230142, PMID:18775970, PMID:19500300, PMID:19017119, PMID:20018591, PMID:20031914, PMID:20138775, PMID:20230493, PMID:20442276, PMID:20736450, PMID:20876333, PMID:21622812, PMID:21665324, PMID:21665322, PMID:22525681, PMID:22771435, PMID:23958864, PMID:23940555, PMID:24018686, locus:2034357; locus_type=protein_coding
AT1G20620.4	chr1:007144692	0.0	W/7144692-7144736,7144829-7145605,7145691-7145780,7145880-7146041,7146134-7146193	AT1G20620.4 CDS AT1G20620 ID=AT1G20620.4; Parent=AT1G20620; Name=AT1G20620.4; Note=catalase 3; curator_summary=Catalase%2C catalyzes the breakdown of hydrogen peroxide (H2O2) into water and oxygen.; conf_class=2; symbol=CAT3; Alias=ATCAT3, SEN2, SENESCENCE 2; full_name=catalase 3; computational_description=catalase 3 (CAT3)%3B FUNCTIONS IN: catalase activity%2C cobalt ion binding%3B INVOLVED IN: in 7 processes%3B LOCATED IN: in 11 components%3B EXPRESSED IN: 29 plant structures%3B EXPRESSED DURING: 17 growth stages%3B CONTAINS InterPro DOMAIN/s: Catalase-like domain%2C haem-dependent (InterPro:IPR020835)%2C Catalase related subgroup (InterPro:IPR018028)%2C Catalase (InterPro:IPR002226)%2C Catalase%2C N-terminal (InterPro:IPR011614)%2C Catalase-related immune responsive (InterPro:IPR010582)%3B BEST Arabidopsis thaliana protein match is: catalase 2 (TAIR:AT4G35090.1)%3B Has 6176 Blast hits to 6156 proteins in 1860 species: Archae - 22%3B Bacteria - 4351%3B Metazoa - 678%3B Fungi - 546%3B Plants - 456%3B Viruses - 0%3B Other Eukaryotes - 123 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9617812, PMID:12376630, PMID:12736379, PMID:14581623, PMID:14671022, PMID:15032878, PMID:17587236, PMID:17728292, PMID:17785451, PMID:17951448, PMID:18230142, PMID:18775970, PMID:19500300, PMID:19017119, PMID:20018591, PMID:20031914, PMID:20138775, PMID:20230493, PMID:20442276, PMID:20736450, PMID:20876333, PMID:21622812, PMID:21665324, PMID:21665322, PMID:22525681, PMID:22771435, PMID:23958864, PMID:23940555, PMID:24018686, locus:2034357; locus_type=protein_coding
AT1G20620.7	chr1:007144692	0.0	W/7144692-7144736,7144829-7145716	AT1G20620.7 CDS AT1G20620 ID=AT1G20620.7; Parent=AT1G20620; Name=AT1G20620.7; Note=catalase 3; symbol=CAT3; Alias=ATCAT3, SEN2, SENESCENCE 2; full_name=catalase 3; curator_summary=Catalase%2C catalyzes the breakdown of hydrogen peroxide (H2O2) into water and oxygen.; computational_description=catalase 3 (CAT3)%3B FUNCTIONS IN: catalase activity%2C cobalt ion binding%3B INVOLVED IN: in 7 processes%3B LOCATED IN: in 11 components%3B EXPRESSED IN: 29 plant structures%3B EXPRESSED DURING: 17 growth stages%3B CONTAINS InterPro DOMAIN/s: Catalase-like domain%2C haem-dependent (InterPro:IPR020835)%2C Catalase related subgroup (InterPro:IPR018028)%2C Catalase (InterPro:IPR002226)%2C Catalase%2C N-terminal (InterPro:IPR011614)%2C Catalase-related immune responsive (InterPro:IPR010582)%3B BEST Arabidopsis thaliana protein match is: catalase 2 (TAIR:AT4G35090.1)%3B Has 6176 Blast hits to 6156 proteins in 1860 species: Archae - 22%3B Bacteria - 4351%3B Metazoa - 678%3B Fungi - 546%3B Plants - 456%3B Viruses - 0%3B Other Eukaryotes - 123 (source: NCBI BLink).; Dbxref=PMID:9617812, PMID:12376630, PMID:12736379, PMID:14581623, PMID:14671022, PMID:15032878, PMID:17587236, PMID:17728292, PMID:17785451, PMID:17951448, PMID:18230142, PMID:18775970, PMID:19500300, PMID:19017119, PMID:20018591, PMID:20031914, PMID:20138775, PMID:20230493, PMID:20442276, PMID:20736450, PMID:20876333, PMID:21622812, PMID:21665324, PMID:21665322, PMID:22525681, PMID:22771435, PMID:23958864, PMID:23940555, PMID:24018686, locus:2034357; locus_type=protein_coding
AT1G20630.1	chr1:007146812	0.0	W/7146812-7146826,7147413-7147509,7147783-7148060,7148239-7149015,7149106-7149195,7149286-7149353,7149456-7149609	AT1G20630.1 CDS AT1G20630 ID=AT1G20630.1; Parent=AT1G20630; Name=AT1G20630.1; Note=catalase 1; curator_summary=Catalyzes the reduction of hydrogen peroxide using heme group as cofactor. Protects cells from toxicity by H2O2.; conf_class=2; symbol=CAT1; full_name=catalase 1; computational_description=catalase 1 (CAT1)%3B FUNCTIONS IN: catalase activity%2C cobalt ion binding%3B INVOLVED IN: in 7 processes%3B LOCATED IN: mitochondrion%2C cytosolic ribosome%2C cell wall%2C peroxisome%2C chloroplast envelope%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 16 growth stages%3B CONTAINS InterPro DOMAIN/s: Catalase related subgroup (InterPro:IPR018028)%2C Catalase (InterPro:IPR002226)%2C Catalase-like domain%2C haem-dependent (InterPro:IPR020835)%2C Catalase%2C N-terminal (InterPro:IPR011614)%2C Catalase-related immune responsive (InterPro:IPR010582)%3B BEST Arabidopsis thaliana protein match is: catalase 2 (TAIR:AT4G35090.1)%3B Has 6108 Blast hits to 6088 proteins in 1842 species: Archae - 22%3B Bacteria - 4283%3B Metazoa - 677%3B Fungi - 546%3B Plants - 461%3B Viruses - 0%3B Other Eukaryotes - 119 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9214587, PMID:12114563, PMID:12376629, PMID:12943550, PMID:14671022, PMID:15608336, PMID:17080932, PMID:17728292, PMID:17951448, PMID:18248592, PMID:18650403, PMID:18775970, PMID:19017119, PMID:20018591, PMID:20118269, PMID:20637531, PMID:20691023, PMID:20876333, PMID:20947669, PMID:21492976, PMID:21665322, PMID:22447966, PMID:22525681, PMID:23958864, PMID:23940555, PMID:24018686, locus:2034428; locus_type=protein_coding
AT1TE23120	chr1:007151876	0.0	W/7151876-7152327	AT1TE23120 transposable_element AT1TE23120 ID=AT1TE23120; Name=AT1TE23120; Alias=HELITRONY1A
AT1TE23125	chr1:007152328	0.0	W/7152328-7152353	AT1TE23125 transposable_element AT1TE23125 ID=AT1TE23125; Name=AT1TE23125; Alias=ATREP5
AT1G20640.1	chr1:007155201	0.0	W/7155201-7155980,7156062-7156109,7156184-7157096,7157193-7157986	AT1G20640.1 CDS AT1G20640 ID=AT1G20640.1; Parent=AT1G20640; Name=AT1G20640.1; Note=Plant regulator RWP-RK family protein; conf_class=1; Alias=NLP4, NIN-like protein 4; computational_description=Plant regulator RWP-RK family protein%3B CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270)%2C Plant regulator RWP-RK (InterPro:IPR003035)%3B BEST Arabidopsis thaliana protein match is: Plant regulator RWP-RK family protein (TAIR:AT1G76350.1)%3B Has 665 Blast hits to 585 proteins in 44 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 2%3B Fungi - 2%3B Plants - 595%3B Viruses - 0%3B Other Eukaryotes - 64 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11118137, PMID:16911220, PMID:18775970, PMID:23511481, locus:2030397; locus_type=protein_coding
AT1G20640.2	chr1:007155201	0.0	W/7155201-7155980,7156062-7156109,7156184-7157096,7157193-7157986	AT1G20640.2 CDS AT1G20640 ID=AT1G20640.2; Parent=AT1G20640; Name=AT1G20640.2; Note=Plant regulator RWP-RK family protein; conf_class=2; Alias=NLP4, NIN-like protein 4; computational_description=Plant regulator RWP-RK family protein%3B CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270)%2C Plant regulator RWP-RK (InterPro:IPR003035)%3B BEST Arabidopsis thaliana protein match is: Plant regulator RWP-RK family protein (TAIR:AT1G76350.1)%3B Has 665 Blast hits to 585 proteins in 44 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 2%3B Fungi - 2%3B Plants - 595%3B Viruses - 0%3B Other Eukaryotes - 64 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:16911220, PMID:18775970, PMID:23511481, locus:2030397; locus_type=protein_coding
AT1G20640.3	chr1:007155201	0.0	W/7155201-7155980,7156062-7156109,7156184-7157096,7157193-7157986	AT1G20640.3 CDS AT1G20640 ID=AT1G20640.3; Parent=AT1G20640; Name=AT1G20640.3; Note=Plant regulator RWP-RK family protein; Alias=NLP4, NIN-like protein 4; Dbxref=PMID:11118137, PMID:16911220, PMID:18775970, PMID:23511481, locus:2030397; computational_description=Plant regulator RWP-RK family protein%3B CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270)%2C Plant regulator RWP-RK (InterPro:IPR003035)%3B BEST Arabidopsis thaliana protein match is: Plant regulator RWP-RK family protein (TAIR:AT1G76350.1)%3B Has 665 Blast hits to 585 proteins in 44 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 2%3B Fungi - 2%3B Plants - 595%3B Viruses - 0%3B Other Eukaryotes - 64 (source: NCBI BLink).; locus_type=protein_coding
AT1G20650.1	chr1:007158422	0.0	C/7158422-7158682,7158765-7159156,7159257-7159446,7159540-7159694,7159785-7159832,7159923-7160022	AT1G20650.1 CDS AT1G20650 ID=AT1G20650.1; Parent=AT1G20650; Name=AT1G20650.1; Note=Protein kinase superfamily protein; conf_class=2; symbol=ASG5; full_name=ALTERED SEED GERMINATION 5; computational_description=Protein kinase superfamily protein%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G76370.1)%3B Has 115469 Blast hits to 114023 proteins in 4226 species: Archae - 107%3B Bacteria - 13502%3B Metazoa - 42790%3B Fungi - 9725%3B Plants - 32710%3B Viruses - 380%3B Other Eukaryotes - 16255 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15489341, PMID:16720694, PMID:18650403, PMID:20736450, locus:2034344; locus_type=protein_coding
AT1G20657.1	chr1:007161846	0.0	C/7161846-7163686	AT1G20657.1 pseudogenic_transcript AT1G20657 ID=AT1G20657.1; Parent=AT1G20657; Name=AT1G20657.1; curator_summary=Pseudogene of AT3G61340%3B F-box family protein; Note=pseudogene; Dbxref=locus:5019474614; computational_description=pseudogene of F-box and associated interaction domains-containing protein; locus_type=pseudogene
AT1TE23160	chr1:007163108	0.0	C/7163108-7163343	AT1TE23160 transposable_element AT1TE23160 ID=AT1TE23160; Name=AT1TE23160; Alias=ATCOPIA81
AT1G20670.1	chr1:007164537	0.0	C/7164537-7165217,7165292-7165440,7165530-7165878,7165963-7166031,7166425-7166523,7166604-7166649,7166751-7166829,7166956-7166992,7167484-7167933	AT1G20670.1 CDS AT1G20670 ID=AT1G20670.1; Parent=AT1G20670; Name=AT1G20670.1; Note=DNA-binding bromodomain-containing protein; conf_class=2; computational_description=DNA-binding bromodomain-containing protein%3B CONTAINS InterPro DOMAIN/s: Bromodomain%2C conserved site (InterPro:IPR018359)%2C Bromodomain (InterPro:IPR001487)%3B BEST Arabidopsis thaliana protein match is: DNA-binding bromodomain-containing protein (TAIR:AT1G76380.2)%3B Has 11096 Blast hits to 8233 proteins in 323 species: Archae - 0%3B Bacteria - 121%3B Metazoa - 4363%3B Fungi - 1457%3B Plants - 677%3B Viruses - 7%3B Other Eukaryotes - 4471 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12466527, PMID:17825834, locus:2030422; locus_type=protein_coding
AT1G20680.2	chr1:007169382	0.0	W/7169382-7169464,7169576-7169762,7169846-7170070,7170209-7170367,7170450-7170587	AT1G20680.2 CDS AT1G20680 ID=AT1G20680.2; Parent=AT1G20680; Name=AT1G20680.2; Note=transport/golgi organization-like protein (DUF833); conf_class=6; computational_description=Protein of unknown function (DUF833)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF833 (InterPro:IPR008551)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF833) (TAIR:AT1G20740.1)%3B Has 128 Blast hits to 124 proteins in 28 species: Archae - 0%3B Bacteria - 24%3B Metazoa - 2%3B Fungi - 0%3B Plants - 83%3B Viruses - 0%3B Other Eukaryotes - 19 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:16299181, locus:2030437; locus_type=protein_coding
AT1G20680.1	chr1:007169402	0.0	W/7169402-7169498,7169566-7169762,7169846-7170070,7170209-7170367,7170450-7170587	AT1G20680.1 CDS AT1G20680 ID=AT1G20680.1; Parent=AT1G20680; Name=AT1G20680.1; Note=transport/golgi organization-like protein (DUF833); conf_class=6; computational_description=Protein of unknown function (DUF833)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF833 (InterPro:IPR008551)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF833) (TAIR:AT1G20740.1)%3B Has 128 Blast hits to 124 proteins in 28 species: Archae - 0%3B Bacteria - 24%3B Metazoa - 2%3B Fungi - 0%3B Plants - 83%3B Viruses - 0%3B Other Eukaryotes - 19 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:16299181, locus:2030437; locus_type=protein_coding
AT1G20683.1	chr1:007172575	0.0	W/7172575-7172592,7172704-7172835	AT1G20683.1 CDS AT1G20683 ID=AT1G20683.1; Parent=AT1G20683; Name=AT1G20683.1; Note=hypothetical protein; locus_type=protein_coding
AT1G20687.1	chr1:007173015	0.0	W/7173015-7173134,7173224-7173340	AT1G20687.1 CDS AT1G20687 ID=AT1G20687.1; Parent=AT1G20687; Name=AT1G20687.1; Note=hypothetical protein; locus_type=protein_coding
AT1TE23190	chr1:007173967	0.0	W/7173967-7174501	AT1TE23190 transposable_element AT1TE23190 ID=AT1TE23190; Name=AT1TE23190; Alias=ATREP19
AT1G20691.1	chr1:007174336	0.0	C/7174336-7176647	AT1G20691.1 antisense_lncRNA AT1G20691 ID=AT1G20691.1; Parent=AT1G20691; curator_summary=Potential natural antisense gene%2C locus overlaps with AT1G20690; Dbxref=locus:6530298143; Name=AT1G20691.1; description=Natural antisense transcript overlaps with AT1G20690; Note=Natural antisense transcript overlaps with AT1G20690; locus_type=antisense_long_noncoding_rna
AT1G20691.2	chr1:007174373	0.0	C/7174373-7176502	AT1G20691.2 antisense_lncRNA AT1G20691 ID=AT1G20691.2; Parent=AT1G20691; Name=AT1G20691.2; description=Natural antisense transcript overlaps with AT1G20690; curator_summary=Potential natural antisense gene%2C locus overlaps with AT1G20690; Note=Natural antisense transcript overlaps with AT1G20690; Dbxref=locus:6530298143; locus_type=antisense_long_noncoding_rna
AT1G20690.1	chr1:007175086	0.0	W/7175086-7175808	AT1G20690.1 CDS AT1G20690 ID=AT1G20690.1; Parent=AT1G20690; Name=AT1G20690.1; Note=SWI-SNF-related chromatin binding protein; conf_class=1; computational_description=SWI-SNF-related chromatin binding protein%3B BEST Arabidopsis thaliana protein match is: SWI-SNF-related chromatin binding protein (TAIR:AT1G20240.1)%3B Has 53 Blast hits to 49 proteins in 3 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 53%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12169696, PMID:16223710, PMID:20736450, locus:2030452; locus_type=protein_coding
AT1G05563.1	chr1:007176122	0.0	C/7176122-7176189	AT1G05563.1 snoRNA AT1G05563 ID=AT1G05563.1; Parent=AT1G05563; Name=AT1G05563.1; Alias=AtsnoR101; Dbxref=PMID:12520043, PMID:22820990; locus_type=small_nucleolar_rna
AT1G20693.1	chr1:007177282	0.0	W/7177282-7177322,7177418-7177522,7177798-7177855,7177960-7178004,7178120-7178200,7178290-7178376,7178470-7178487	AT1G20693.1 CDS AT1G20693 ID=AT1G20693.1; Parent=AT1G20693; Name=AT1G20693.1; Note=high mobility group B2; curator_summary=Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif%2C the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha.; conf_class=2; symbol=HMGB2; Alias=HMG BETA 1, HIGH MOBILITY GROUP BETA 1, NFD02, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, NFD2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2; full_name=high mobility group B2; computational_description=high mobility group B2 (HMGB2)%3B FUNCTIONS IN: chromatin binding%2C structural constituent of chromatin%2C DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: chromatin assembly or disassembly%3B LOCATED IN: chromatin%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: High mobility group%2C superfamily (InterPro:IPR009071)%2C High mobility group%2C HMG1/HMG2 (InterPro:IPR000910)%2C High mobility group%2C HMG1/HMG2%2C subgroup (InterPro:IPR000135)%3B BEST Arabidopsis thaliana protein match is: high mobility group B3 (TAIR:AT1G20696.3)%3B Has 7209 Blast hits to 6316 proteins in 714 species: Archae - 2%3B Bacteria - 5%3B Metazoa - 5374%3B Fungi - 532%3B Plants - 604%3B Viruses - 9%3B Other Eukaryotes - 683 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9461286, PMID:11118137, PMID:12653554, PMID:14756567, PMID:17169924, PMID:17827277, PMID:20123078, PMID:20940346, PMID:21543902, locus:505006135; locus_type=protein_coding
AT1G20693.2	chr1:007177282	0.0	W/7177282-7177322,7177418-7177522,7177798-7177855,7177960-7178004,7178120-7178200,7178290-7178376,7178476-7178487	AT1G20693.2 CDS AT1G20693 ID=AT1G20693.2; Parent=AT1G20693; Name=AT1G20693.2; Note=high mobility group B2; curator_summary=Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif%2C the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha.; conf_class=2; symbol=HMGB2; Alias=HMG BETA 1, HIGH MOBILITY GROUP BETA 1, NFD02, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, NFD2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2; full_name=high mobility group B2; computational_description=high mobility group B2 (HMGB2)%3B FUNCTIONS IN: chromatin binding%2C structural constituent of chromatin%2C DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: chromatin assembly or disassembly%3B LOCATED IN: chromatin%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: High mobility group%2C superfamily (InterPro:IPR009071)%2C High mobility group%2C HMG1/HMG2 (InterPro:IPR000910)%2C High mobility group%2C HMG1/HMG2%2C subgroup (InterPro:IPR000135)%3B BEST Arabidopsis thaliana protein match is: high mobility group B3 (TAIR:AT1G20696.3)%3B Has 7209 Blast hits to 6316 proteins in 714 species: Archae - 2%3B Bacteria - 5%3B Metazoa - 5374%3B Fungi - 532%3B Plants - 604%3B Viruses - 9%3B Other Eukaryotes - 683 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9461286, PMID:11118137, PMID:12653554, PMID:14756567, PMID:17169924, PMID:17827277, PMID:20123078, PMID:20940346, PMID:21543902, locus:505006135; locus_type=protein_coding
AT1G20693.3	chr1:007177282	0.0	W/7177282-7177322,7177418-7177522,7177798-7177855,7177960-7178004,7178120-7178200,7178290-7178376,7178473-7178487	AT1G20693.3 CDS AT1G20693 ID=AT1G20693.3; Parent=AT1G20693; Name=AT1G20693.3; Note=high mobility group B2; curator_summary=Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif%2C the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha.; conf_class=2; symbol=HMGB2; Alias=HMG BETA 1, HIGH MOBILITY GROUP BETA 1, NFD02, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, NFD2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2; full_name=high mobility group B2; computational_description=high mobility group B2 (HMGB2)%3B FUNCTIONS IN: chromatin binding%2C structural constituent of chromatin%2C DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: chromatin assembly or disassembly%3B LOCATED IN: chromatin%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: High mobility group%2C superfamily (InterPro:IPR009071)%2C High mobility group%2C HMG1/HMG2 (InterPro:IPR000910)%2C High mobility group%2C HMG1/HMG2%2C subgroup (InterPro:IPR000135)%3B BEST Arabidopsis thaliana protein match is: high mobility group B3 (TAIR:AT1G20696.3)%3B Has 7209 Blast hits to 6316 proteins in 714 species: Archae - 2%3B Bacteria - 5%3B Metazoa - 5374%3B Fungi - 532%3B Plants - 604%3B Viruses - 9%3B Other Eukaryotes - 683 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9461286, PMID:11118137, PMID:12653554, PMID:14756567, PMID:17169924, PMID:17827277, PMID:20123078, PMID:20940346, PMID:21543902, locus:505006135; locus_type=protein_coding
AT1G20696.1	chr1:007179825	0.0	W/7179825-7179865,7179999-7180094,7180368-7180425,7180537-7180581,7180674-7180754,7180983-7181069,7181157-7181174	AT1G20696.1 CDS AT1G20696 ID=AT1G20696.1; Parent=AT1G20696; Name=AT1G20696.1; Note=high mobility group B3; curator_summary=Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif%2C the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha.; conf_class=2; symbol=HMGB3; Alias=NFD03, NFD3; full_name=high mobility group B3; computational_description=high mobility group B3 (HMGB3)%3B FUNCTIONS IN: chromatin binding%2C structural constituent of chromatin%2C DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: chromatin assembly or disassembly%3B LOCATED IN: chromatin%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: High mobility group%2C superfamily (InterPro:IPR009071)%2C High mobility group%2C HMG1/HMG2 (InterPro:IPR000910)%3B BEST Arabidopsis thaliana protein match is: high mobility group B2 (TAIR:AT1G20693.2)%3B Has 5914 Blast hits to 5088 proteins in 514 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 4343%3B Fungi - 437%3B Plants - 569%3B Viruses - 4%3B Other Eukaryotes - 561 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9461286, PMID:11118137, PMID:12653554, PMID:14973164, PMID:14756567, PMID:15147899, PMID:17827277, PMID:20123078, locus:505006136; locus_type=protein_coding
AT1G20696.2	chr1:007179825	0.0	W/7179825-7179865,7179999-7180094,7180368-7180425,7180537-7180581,7180674-7180760,7180990-7181069,7181157-7181193	AT1G20696.2 CDS AT1G20696 ID=AT1G20696.2; Parent=AT1G20696; Name=AT1G20696.2; Note=high mobility group B3; curator_summary=Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif%2C the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha.; conf_class=3; symbol=HMGB3; Alias=NFD03, NFD3; full_name=high mobility group B3; computational_description=high mobility group B3 (HMGB3)%3B FUNCTIONS IN: chromatin binding%2C structural constituent of chromatin%2C DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: chromatin assembly or disassembly%3B LOCATED IN: chromatin%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: High mobility group%2C superfamily (InterPro:IPR009071)%2C High mobility group%2C HMG1/HMG2 (InterPro:IPR000910)%3B BEST Arabidopsis thaliana protein match is: high mobility group B2 (TAIR:AT1G20693.2)%3B Has 5914 Blast hits to 5088 proteins in 514 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 4343%3B Fungi - 437%3B Plants - 569%3B Viruses - 4%3B Other Eukaryotes - 561 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9461286, PMID:11118137, PMID:12653554, PMID:14973164, PMID:14756567, PMID:15147899, PMID:17827277, PMID:20123078, locus:505006136; locus_type=protein_coding
AT1G20696.5	chr1:007179825	0.0	W/7179825-7179865,7179999-7180094,7180368-7180425,7180537-7180581,7180674-7180835	AT1G20696.5 CDS AT1G20696 ID=AT1G20696.5; Parent=AT1G20696; Name=AT1G20696.5; Note=high mobility group B3; symbol=HMGB3; Alias=NFD03, NFD3; full_name=high mobility group B3; curator_summary=Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif%2C the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha.; computational_description=high mobility group B3 (HMGB3)%3B FUNCTIONS IN: chromatin binding%2C structural constituent of chromatin%2C DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: chromatin assembly or disassembly%3B LOCATED IN: chromatin%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: High mobility group%2C superfamily (InterPro:IPR009071)%2C High mobility group%2C HMG1/HMG2 (InterPro:IPR000910)%3B BEST Arabidopsis thaliana protein match is: high mobility group B2 (TAIR:AT1G20693.2)%3B Has 5914 Blast hits to 5088 proteins in 514 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 4343%3B Fungi - 437%3B Plants - 569%3B Viruses - 4%3B Other Eukaryotes - 561 (source: NCBI BLink).; Dbxref=PMID:9461286, PMID:11118137, PMID:12653554, PMID:14973164, PMID:14756567, PMID:15147899, PMID:17827277, PMID:20123078, locus:505006136; locus_type=protein_coding
AT1G20696.3	chr1:007180357	0.0	W/7180357-7180425,7180537-7180581,7180674-7180754,7180983-7181073,7181160-7181170	AT1G20696.3 CDS AT1G20696 ID=AT1G20696.3; Parent=AT1G20696; Name=AT1G20696.3; Note=high mobility group B3; curator_summary=Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif%2C the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha.; conf_class=2; symbol=HMGB3; Alias=NFD03, NFD3; full_name=high mobility group B3; computational_description=high mobility group B3 (HMGB3)%3B FUNCTIONS IN: chromatin binding%2C structural constituent of chromatin%2C DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: chromatin assembly or disassembly%3B LOCATED IN: chromatin%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: High mobility group%2C superfamily (InterPro:IPR009071)%2C High mobility group%2C HMG1/HMG2 (InterPro:IPR000910)%3B BEST Arabidopsis thaliana protein match is: high mobility group B2 (TAIR:AT1G20693.2)%3B Has 5914 Blast hits to 5088 proteins in 514 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 4343%3B Fungi - 437%3B Plants - 569%3B Viruses - 4%3B Other Eukaryotes - 561 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9461286, PMID:11118137, PMID:12653554, PMID:14973164, PMID:14756567, PMID:15147899, PMID:17827277, PMID:20123078, locus:505006136; locus_type=protein_coding
AT1G20696.4	chr1:007180357	0.0	W/7180357-7180425,7180537-7180581,7180674-7180754,7180983-7181069,7181157-7181174	AT1G20696.4 CDS AT1G20696 ID=AT1G20696.4; Parent=AT1G20696; Name=AT1G20696.4; Note=high mobility group B3; symbol=HMGB3; Alias=NFD03, NFD3; full_name=high mobility group B3; curator_summary=Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif%2C the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha.; computational_description=high mobility group B3 (HMGB3)%3B FUNCTIONS IN: chromatin binding%2C structural constituent of chromatin%2C DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: chromatin assembly or disassembly%3B LOCATED IN: chromatin%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: High mobility group%2C superfamily (InterPro:IPR009071)%2C High mobility group%2C HMG1/HMG2 (InterPro:IPR000910)%3B BEST Arabidopsis thaliana protein match is: high mobility group B2 (TAIR:AT1G20693.2)%3B Has 5914 Blast hits to 5088 proteins in 514 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 4343%3B Fungi - 437%3B Plants - 569%3B Viruses - 4%3B Other Eukaryotes - 561 (source: NCBI BLink).; Dbxref=PMID:9461286, PMID:11118137, PMID:12653554, PMID:14973164, PMID:14756567, PMID:15147899, PMID:17827277, PMID:20123078, locus:505006136; locus_type=protein_coding
AT1G20700.1	chr1:007182558	0.0	W/7182558-7182762,7183349-7183735,7183823-7183866	AT1G20700.1 CDS AT1G20700 ID=AT1G20700.1; Parent=AT1G20700; Name=AT1G20700.1; Note=WUSCHEL related homeobox 14; curator_summary=Encodes WOX14%2C a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box. Functions in the shoot meristem organizing center to maintain the stem cells in an undifferentiated state. WOX4 and WOX14 act downstream of the PXY receptor kinase to regulate plant vascular proliferation independently of any role in vascular organisation.; conf_class=2; symbol=WOX14; Alias=ATWOX14, WUSCHEL RELATED HOMEOBOX 14; full_name=WUSCHEL related homeobox 14; computational_description=WUSCHEL related homeobox 14 (WOX14)%3B CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356)%2C Homeodomain-like (InterPro:IPR009057)%2C Homeodomain-related (InterPro:IPR012287)%3B BEST Arabidopsis thaliana protein match is: WUSCHEL related homeobox 10 (TAIR:AT1G20710.1)%3B Has 657 Blast hits to 657 proteins in 86 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 109%3B Fungi - 12%3B Plants - 530%3B Viruses - 0%3B Other Eukaryotes - 6 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:12383089, PMID:14711878, PMID:18653559, PMID:18950478, PMID:20729381, PMID:20977659, PMID:22037706, PMID:23578929, locus:2030467; locus_type=protein_coding
AT1G20700.3	chr1:007182558	0.0	W/7182558-7182762,7183349-7183752	AT1G20700.3 CDS AT1G20700 ID=AT1G20700.3; Parent=AT1G20700; Name=AT1G20700.3; Note=WUSCHEL related homeobox 14; symbol=WOX14; Alias=ATWOX14, WUSCHEL RELATED HOMEOBOX 14; full_name=WUSCHEL related homeobox 14; curator_summary=Encodes WOX14%2C a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box. Functions in the shoot meristem organizing center to maintain the stem cells in an undifferentiated state. WOX4 and WOX14 act downstream of the PXY receptor kinase to regulate plant vascular proliferation independently of any role in vascular organisation.; computational_description=WUSCHEL related homeobox 14 (WOX14)%3B CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356)%2C Homeodomain-like (InterPro:IPR009057)%2C Homeodomain-related (InterPro:IPR012287)%3B BEST Arabidopsis thaliana protein match is: WUSCHEL related homeobox 10 (TAIR:AT1G20710.1)%3B Has 657 Blast hits to 657 proteins in 86 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 109%3B Fungi - 12%3B Plants - 530%3B Viruses - 0%3B Other Eukaryotes - 6 (source: NCBI BLink).; Dbxref=PMID:11118137, PMID:12383089, PMID:14711878, PMID:18653559, PMID:18950478, PMID:20729381, PMID:20977659, PMID:22037706, PMID:23578929, locus:2030467; locus_type=protein_coding
AT1G20700.2	chr1:007183330	0.0	W/7183330-7183735,7183823-7183866	AT1G20700.2 CDS AT1G20700 ID=AT1G20700.2; Parent=AT1G20700; Name=AT1G20700.2; Note=WUSCHEL related homeobox 14; symbol=WOX14; Alias=ATWOX14, WUSCHEL RELATED HOMEOBOX 14; full_name=WUSCHEL related homeobox 14; curator_summary=Encodes WOX14%2C a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box. Functions in the shoot meristem organizing center to maintain the stem cells in an undifferentiated state. WOX4 and WOX14 act downstream of the PXY receptor kinase to regulate plant vascular proliferation independently of any role in vascular organisation.; computational_description=WUSCHEL related homeobox 14 (WOX14)%3B CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356)%2C Homeodomain-like (InterPro:IPR009057)%2C Homeodomain-related (InterPro:IPR012287)%3B BEST Arabidopsis thaliana protein match is: WUSCHEL related homeobox 10 (TAIR:AT1G20710.1)%3B Has 657 Blast hits to 657 proteins in 86 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 109%3B Fungi - 12%3B Plants - 530%3B Viruses - 0%3B Other Eukaryotes - 6 (source: NCBI BLink).; Dbxref=PMID:11118137, PMID:12383089, PMID:14711878, PMID:18653559, PMID:18950478, PMID:20729381, PMID:20977659, PMID:22037706, PMID:23578929, locus:2030467; locus_type=protein_coding
AT1G20710.1	chr1:007184485	0.0	W/7184485-7184641,7184733-7185128,7185227-7185267	AT1G20710.1 CDS AT1G20710 ID=AT1G20710.1; Parent=AT1G20710; Name=AT1G20710.1; Note=WUSCHEL related homeobox 10; curator_summary=Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box.; conf_class=6; symbol=WOX10; Alias=WOX13B, WUSCHEL related homeobox 13B; full_name=WUSCHEL related homeobox 10; computational_description=WUSCHEL related homeobox 10 (WOX10)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%2C regulation of transcription%3B LOCATED IN: nucleus%3B CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356)%2C Homeodomain-like (InterPro:IPR009057)%2C Homeodomain-related (InterPro:IPR012287)%3B BEST Arabidopsis thaliana protein match is: WUSCHEL related homeobox 14 (TAIR:AT1G20700.1)%3B Has 658 Blast hits to 658 proteins in 86 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 98%3B Fungi - 6%3B Plants - 551%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:11118137, PMID:12383089, PMID:14711878, PMID:15517348, PMID:20736450, PMID:20729381, PMID:20977659, locus:2030487; locus_type=protein_coding
AT1G20720.1	chr1:007185658	0.0	C/7185658-7185702,7185782-7185904,7186069-7186140,7186248-7186432,7186715-7187121,7187302-7187507,7187594-7187728,7187802-7187926,7188018-7188065,7188159-7188280,7188366-7188394,7188499-7188543,7188720-7188901,7188986-7189142,7189260-7189343,7189418-7189511,7189855-7189963,7190063-7190152,7190241-7190319,7190403-7190490,7190880-7190950,7191031-7191104,7191191-7191252,7191380-7191521,7191600-7191700,7191792-7191839,7191924-7191988,7192088-7192163,7192256-7192337,7192413-7192794	AT1G20720.1 CDS AT1G20720 ID=AT1G20720.1; Parent=AT1G20720; Name=AT1G20720.1; Note=RAD3-like DNA-binding helicase protein; conf_class=6; computational_description=RAD3-like DNA-binding helicase protein%3B FUNCTIONS IN: in 6 functions%3B INVOLVED IN: nucleobase%2C nucleoside%2C nucleotide and nucleic acid metabolic process%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 8 plant structures%3B EXPRESSED DURING: 4 anthesis%2C F mature embryo stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: DEAD2 (InterPro:IPR010614)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain%2C DinG/Rad3-type (InterPro:IPR014013)%2C Helicase-like%2C DEXD box c2 type (InterPro:IPR006554)%2C DNA helicase (DNA repair)%2C Rad3 type (InterPro:IPR013020)%2C Helicase%2C ATP-dependent%2C c2 type (InterPro:IPR006555)%3B BEST Arabidopsis thaliana protein match is: RAD3-like DNA-binding helicase protein (TAIR:AT1G20750.1)%3B Has 2863 Blast hits to 2328 proteins in 675 species: Archae - 243%3B Bacteria - 679%3B Metazoa - 737%3B Fungi - 397%3B Plants - 210%3B Viruses - 5%3B Other Eukaryotes - 592 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:12609051, PMID:14671022, PMID:16126853, locus:2030497; locus_type=protein_coding
AT1G20720.2	chr1:007185658	0.0	C/7185658-7185702,7185782-7185904,7186069-7186140,7186248-7187121,7187302-7187507,7187594-7187728,7187802-7187926,7188018-7188065,7188159-7188280,7188366-7188394,7188499-7188543,7188720-7188901,7188986-7189142,7189260-7189343,7189418-7189511,7189855-7189963,7190063-7190152,7190241-7190319,7190403-7190490,7190880-7190950,7191031-7191104,7191191-7191252,7191380-7191521,7191600-7191700,7191792-7191839,7191924-7191988,7192088-7192163,7192256-7192337,7192413-7192794	AT1G20720.2 CDS AT1G20720 ID=AT1G20720.2; Parent=AT1G20720; Name=AT1G20720.2; Note=RAD3-like DNA-binding helicase protein; computational_description=RAD3-like DNA-binding helicase protein%3B FUNCTIONS IN: in 6 functions%3B INVOLVED IN: nucleobase%2C nucleoside%2C nucleotide and nucleic acid metabolic process%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 8 plant structures%3B EXPRESSED DURING: 4 anthesis%2C F mature embryo stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: DEAD2 (InterPro:IPR010614)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain%2C DinG/Rad3-type (InterPro:IPR014013)%2C Helicase-like%2C DEXD box c2 type (InterPro:IPR006554)%2C DNA helicase (DNA repair)%2C Rad3 type (InterPro:IPR013020)%2C Helicase%2C ATP-dependent%2C c2 type (InterPro:IPR006555)%3B BEST Arabidopsis thaliana protein match is: RAD3-like DNA-binding helicase protein (TAIR:AT1G20750.1)%3B Has 2863 Blast hits to 2328 proteins in 675 species: Archae - 243%3B Bacteria - 679%3B Metazoa - 737%3B Fungi - 397%3B Plants - 210%3B Viruses - 5%3B Other Eukaryotes - 592 (source: NCBI BLink).; Dbxref=PMID:12609051, PMID:14671022, PMID:16126853, locus:2030497; locus_type=protein_coding
AT1G20730.1	chr1:007194256	0.0	W/7194256-7194335,7194425-7194608,7194684-7194905,7195009-7195155,7195263-7195400	AT1G20730.1 CDS AT1G20730 ID=AT1G20730.1; Parent=AT1G20730; Name=AT1G20730.1; Note=transport/golgi organization-like protein%2C putative (DUF833); conf_class=3; computational_description=Protein of unknown function (DUF833)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF833 (InterPro:IPR008551)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF833) (TAIR:AT1G20740.1)%3B Has 432 Blast hits to 427 proteins in 156 species: Archae - 0%3B Bacteria - 238%3B Metazoa - 13%3B Fungi - 0%3B Plants - 127%3B Viruses - 2%3B Other Eukaryotes - 52 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:20736450, locus:2030507; locus_type=protein_coding
AT1TE23260	chr1:007196712	0.0	W/7196712-7197396	AT1TE23260 transposable_element AT1TE23260 ID=AT1TE23260; Name=AT1TE23260; Alias=ATREP4
AT1G20735.1	chr1:007197491	0.0	W/7197491-7198681	AT1G20735.1 CDS AT1G20735 ID=AT1G20735.1; Parent=AT1G20735; Name=AT1G20735.1; Note=F-box and associated interaction domains-containing protein; conf_class=9; computational_description=F-box and associated interaction domains-containing protein%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%2C F-box associated interaction domain (InterPro:IPR017451)%3B BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G20940.1).; conf_rating=*; Dbxref=locus:6530298144; locus_type=protein_coding
AT1G05567.1	chr1:007199048	0.0	C/7199048-7199427	AT1G05567.1 lnc_RNA AT1G05567 ID=AT1G05567.1; Parent=AT1G05567; Name=AT1G05567.1; locus_type=long_noncoding_rna
AT1G20740.2	chr1:007200374	0.0	W/7200374-7200453,7200542-7200728,7200807-7201031,7201146-7201289,7201398-7201538	AT1G20740.2 CDS AT1G20740 ID=AT1G20740.2; Parent=AT1G20740; Name=AT1G20740.2; Note=transport/golgi organization-like protein (DUF833); computational_description=Protein of unknown function (DUF833)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF833 (InterPro:IPR008551)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF833) (TAIR:AT1G20730.1)%3B Has 322 Blast hits to 322 proteins in 133 species: Archae - 0%3B Bacteria - 194%3B Metazoa - 18%3B Fungi - 2%3B Plants - 74%3B Viruses - 0%3B Other Eukaryotes - 34 (source: NCBI BLink).; Dbxref=locus:2030402; locus_type=protein_coding
AT1G20740.1	chr1:007200394	0.0	W/7200394-7200457,7200502-7200728,7200807-7201031,7201146-7201289,7201398-7201538	AT1G20740.1 CDS AT1G20740 ID=AT1G20740.1; Parent=AT1G20740; Name=AT1G20740.1; Note=transport/golgi organization-like protein (DUF833); conf_class=6; computational_description=Protein of unknown function (DUF833)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF833 (InterPro:IPR008551)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF833) (TAIR:AT1G20730.1)%3B Has 322 Blast hits to 322 proteins in 133 species: Archae - 0%3B Bacteria - 194%3B Metazoa - 18%3B Fungi - 2%3B Plants - 74%3B Viruses - 0%3B Other Eukaryotes - 34 (source: NCBI BLink).; conf_rating=**; Dbxref=locus:2030402; locus_type=protein_coding
AT1TE23270	chr1:007201688	0.0	C/7201688-7202038,7202039-7202131	AT1TE23270 transposable_element AT1TE23270 ID=AT1TE23270; Name=AT1TE23270; Alias=TNAT1A
AT1TE23275	chr1:007202132	0.0	C/7202132-7202162	AT1TE23275 transposable_element AT1TE23275 ID=AT1TE23275; Name=AT1TE23275; Alias=TNAT1A
AT1TE23280	chr1:007202163	0.0	C/7202163-7202263	AT1TE23280 transposable_element AT1TE23280 ID=AT1TE23280; Name=AT1TE23280; Alias=HELITRONY3A
AT1TE23285	chr1:007202464	0.0	W/7202464-7202502	AT1TE23285 transposable_element AT1TE23285 ID=AT1TE23285; Name=AT1TE23285; Alias=TNAT1A
AT1G20750.1	chr1:007203302	0.0	C/7203302-7203454,7203562-7203633,7203714-7204530,7204628-7204848,7204927-7205060,7205112-7205281,7205357-7205385,7205497-7205541,7205655-7205836,7205919-7206075,7206177-7206260,7206333-7206426,7206513-7206615,7206690-7206779,7206871-7206949,7207033-7207120,7207208-7207278,7207366-7207439,7207511-7207603,7207857-7207957,7208049-7208096,7208185-7208249,7208349-7208424,7208516-7208579,7208674-7208998	AT1G20750.1 CDS AT1G20750 ID=AT1G20750.1; Parent=AT1G20750; Name=AT1G20750.1; Note=RAD3-like DNA-binding helicase protein; conf_class=7; computational_description=RAD3-like DNA-binding helicase protein%3B FUNCTIONS IN: in 6 functions%3B INVOLVED IN: nucleobase%2C nucleoside%2C nucleotide and nucleic acid metabolic process%3B LOCATED IN: chloroplast%3B EXPRESSED IN: sperm cell%3B CONTAINS InterPro DOMAIN/s: DEAD2 (InterPro:IPR010614)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain%2C DinG/Rad3-type (InterPro:IPR014013)%2C Helicase-like%2C DEXD box c2 type (InterPro:IPR006554)%2C Helicase%2C ATP-dependent%2C c2 type (InterPro:IPR006555)%3B BEST Arabidopsis thaliana protein match is: RAD3-like DNA-binding helicase protein (TAIR:AT1G20720.1)%3B Has 2571 Blast hits to 1958 proteins in 520 species: Archae - 146%3B Bacteria - 396%3B Metazoa - 797%3B Fungi - 439%3B Plants - 210%3B Viruses - 2%3B Other Eukaryotes - 581 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:16126853, locus:2030412; locus_type=protein_coding
AT1G20760.1	chr1:007209515	0.0	W/7209515-7209655,7210007-7211048,7211328-7211546,7211632-7211849,7211938-7212012,7212494-7212565,7212644-7212742,7213030-7213101,7213192-7213306,7213419-7213487,7213586-7213944,7214195-7214773	AT1G20760.1 CDS AT1G20760 ID=AT1G20760.1; Parent=AT1G20760; Name=AT1G20760.1; Note=Calcium-binding EF hand family protein; conf_class=2; computational_description=Calcium-binding EF hand family protein%3B FUNCTIONS IN: calcium ion binding%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249)%2C EPS15 homology (EH) (InterPro:IPR000261)%2C EF-hand-like domain (InterPro:IPR011992)%2C Calcium-binding EF-hand (InterPro:IPR002048)%3B BEST Arabidopsis thaliana protein match is: Calcium-binding EF hand family protein (TAIR:AT1G21630.1)%3B Has 12017 Blast hits to 4944 proteins in 443 species: Archae - 20%3B Bacteria - 3590%3B Metazoa - 3650%3B Fungi - 1736%3B Plants - 412%3B Viruses - 16%3B Other Eukaryotes - 2593 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12372144, PMID:18775970, locus:2030432; locus_type=protein_coding
AT1G20770.1	chr1:007215345	0.0	C/7215345-7215421,7215505-7215592,7215683-7215732,7215816-7215962,7216085-7216202,7216481-7216648	AT1G20770.1 CDS AT1G20770 ID=AT1G20770.1; Parent=AT1G20770; Name=AT1G20770.1; Note=coiled-coil protein; conf_class=2; computational_description=unknown protein%3B Has 59 Blast hits to 59 proteins in 24 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 26%3B Fungi - 4%3B Plants - 29%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, locus:2030447; locus_type=protein_coding
AT1G20770.2	chr1:007215733	0.0	C/7215733-7215962,7216085-7216202,7216481-7216648	AT1G20770.2 CDS AT1G20770 ID=AT1G20770.2; Parent=AT1G20770; Name=AT1G20770.2; Note=coiled-coil protein; computational_description=unknown protein%3B Has 59 Blast hits to 59 proteins in 24 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 26%3B Fungi - 4%3B Plants - 29%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=PMID:18775970, locus:2030447; locus_type=protein_coding
AT1G20780.1	chr1:007217812	0.0	W/7217812-7218348,7218445-7218754,7219051-7220609	AT1G20780.1 CDS AT1G20780 ID=AT1G20780.1; Parent=AT1G20780; Name=AT1G20780.1; Note=senescence-associated E3 ubiquitin ligase 1; curator_summary=Encodes a protein containing a U-box and an ARM domain. Homozygous mutant seedlings have a seedling lethal phenotype with widespread cell death lesions throughout the cotyledons and roots.; conf_class=2; symbol=SAUL1; Alias=ATPUB44, ARABIDOPSIS THALIANA PLANT U-BOX 44, PUB44, PLANT U-BOX 44; full_name=senescence-associated E3 ubiquitin ligase 1; computational_description=senescence-associated E3 ubiquitin ligase 1 (SAUL1)%3B FUNCTIONS IN: ubiquitin-protein ligase activity%3B INVOLVED IN: regulation of chlorophyll catabolic process%2C regulation of chlorophyll biosynthetic process%2C leaf senescence%2C regulation of abscisic acid biosynthetic process%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 9 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613)%2C Armadillo-like helical (InterPro:IPR011989)%2C Armadillo (InterPro:IPR000225)%2C Armadillo-type fold (InterPro:IPR016024)%3B BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G76390.2)%3B Has 2790 Blast hits to 2660 proteins in 201 species: Archae - 0%3B Bacteria - 20%3B Metazoa - 434%3B Fungi - 161%3B Plants - 1969%3B Viruses - 3%3B Other Eukaryotes - 203 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12432076, PMID:12946625, PMID:14657406, PMID:18552232, PMID:19309463, PMID:20956359, PMID:21738636, PMID:22706448, PMID:24600457, locus:2030462; locus_type=protein_coding
AT1G20780.2	chr1:007217812	0.0	W/7217812-7218348,7218445-7218754,7219051-7220609	AT1G20780.2 CDS AT1G20780 ID=AT1G20780.2; Parent=AT1G20780; Name=AT1G20780.2; Note=senescence-associated E3 ubiquitin ligase 1; symbol=SAUL1; Alias=ATPUB44, ARABIDOPSIS THALIANA PLANT U-BOX 44, PUB44, PLANT U-BOX 44; full_name=senescence-associated E3 ubiquitin ligase 1; Dbxref=PMID:12432076, PMID:12946625, PMID:14657406, PMID:18552232, PMID:19309463, PMID:20956359, PMID:21738636, PMID:22706448, PMID:24600457, locus:2030462; curator_summary=Encodes a protein containing a U-box and an ARM domain. Homozygous mutant seedlings have a seedling lethal phenotype with widespread cell death lesions throughout the cotyledons and roots.; computational_description=senescence-associated E3 ubiquitin ligase 1 (SAUL1)%3B FUNCTIONS IN: ubiquitin-protein ligase activity%3B INVOLVED IN: regulation of chlorophyll catabolic process%2C regulation of chlorophyll biosynthetic process%2C leaf senescence%2C regulation of abscisic acid biosynthetic process%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 9 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613)%2C Armadillo-like helical (InterPro:IPR011989)%2C Armadillo (InterPro:IPR000225)%2C Armadillo-type fold (InterPro:IPR016024)%3B BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G76390.2)%3B Has 2790 Blast hits to 2660 proteins in 201 species: Archae - 0%3B Bacteria - 20%3B Metazoa - 434%3B Fungi - 161%3B Plants - 1969%3B Viruses - 3%3B Other Eukaryotes - 203 (source: NCBI BLink).; locus_type=protein_coding
AT1G20780.3	chr1:007217812	0.0	W/7217812-7218348,7218445-7218754,7219051-7220609	AT1G20780.3 CDS AT1G20780 ID=AT1G20780.3; Parent=AT1G20780; Name=AT1G20780.3; Note=senescence-associated E3 ubiquitin ligase 1; symbol=SAUL1; Alias=ATPUB44, ARABIDOPSIS THALIANA PLANT U-BOX 44, PUB44, PLANT U-BOX 44; full_name=senescence-associated E3 ubiquitin ligase 1; Dbxref=PMID:12432076, PMID:12946625, PMID:14657406, PMID:18552232, PMID:19309463, PMID:20956359, PMID:21738636, PMID:22706448, PMID:24600457, locus:2030462; curator_summary=Encodes a protein containing a U-box and an ARM domain. Homozygous mutant seedlings have a seedling lethal phenotype with widespread cell death lesions throughout the cotyledons and roots.; computational_description=senescence-associated E3 ubiquitin ligase 1 (SAUL1)%3B FUNCTIONS IN: ubiquitin-protein ligase activity%3B INVOLVED IN: regulation of chlorophyll catabolic process%2C regulation of chlorophyll biosynthetic process%2C leaf senescence%2C regulation of abscisic acid biosynthetic process%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 9 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613)%2C Armadillo-like helical (InterPro:IPR011989)%2C Armadillo (InterPro:IPR000225)%2C Armadillo-type fold (InterPro:IPR016024)%3B BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G76390.2)%3B Has 2790 Blast hits to 2660 proteins in 201 species: Archae - 0%3B Bacteria - 20%3B Metazoa - 434%3B Fungi - 161%3B Plants - 1969%3B Viruses - 3%3B Other Eukaryotes - 203 (source: NCBI BLink).; locus_type=protein_coding
AT1G20790.1	chr1:007220961	0.0	C/7220961-7222268	AT1G20790.1 CDS AT1G20790 ID=AT1G20790.1; Parent=AT1G20790; Name=AT1G20790.1; Note=F-box family protein; conf_class=4; computational_description=F-box family protein%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%2C F-box associated interaction domain (InterPro:IPR017451)%3B BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G20795.1)%3B Has 1819 Blast hits to 716 proteins in 166 species: Archae - 2%3B Bacteria - 445%3B Metazoa - 392%3B Fungi - 63%3B Plants - 395%3B Viruses - 75%3B Other Eukaryotes - 447 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:15266052, PMID:20736450, locus:2030472; locus_type=protein_coding
AT1G05583.1	chr1:007223055	0.0	C/7223055-7223257	AT1G05583.1 lnc_RNA AT1G05583 ID=AT1G05583.1; Parent=AT1G05583; Name=AT1G05583.1; locus_type=long_noncoding_rna
AT1G05587.1	chr1:007223476	0.0	C/7223476-7223713	AT1G05587.1 lnc_RNA AT1G05587 ID=AT1G05587.1; Parent=AT1G05587; Name=AT1G05587.1; locus_type=long_noncoding_rna
AT1G05593.1	chr1:007223760	0.0	W/7223760-7224256	AT1G05593.1 lnc_RNA AT1G05593 ID=AT1G05593.1; Parent=AT1G05593; Name=AT1G05593.1; locus_type=long_noncoding_rna
AT1TE23350	chr1:007224970	0.0	C/7224970-7225108	AT1TE23350 transposable_element AT1TE23350 ID=AT1TE23350; Name=AT1TE23350; Alias=ATHATN3
AT1G05597.1	chr1:007225309	0.0	C/7225309-7225588	AT1G05597.1 lnc_RNA AT1G05597 ID=AT1G05597.1; Parent=AT1G05597; Name=AT1G05597.1; locus_type=long_noncoding_rna
AT1G05603.1	chr1:007225434	0.0	W/7225434-7225775	AT1G05603.1 lnc_RNA AT1G05603 ID=AT1G05603.1; Parent=AT1G05603; Name=AT1G05603.1; locus_type=long_noncoding_rna
AT1G20795.1	chr1:007226310	0.0	C/7226310-7227566	AT1G20795.1 CDS AT1G20795 ID=AT1G20795.1; Parent=AT1G20795; Name=AT1G20795.1; Note=F-box family protein; conf_class=9; computational_description=F-box family protein%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C F-box associated interaction domain (InterPro:IPR017451)%3B BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G20800.2)%3B Has 127 Blast hits to 118 proteins in 14 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 127%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*; Dbxref=PMID:20736450, locus:1005716748; locus_type=protein_coding
AT1TE23355	chr1:007227970	0.0	W/7227970-7228129	AT1TE23355 transposable_element AT1TE23355 ID=AT1TE23355; Name=AT1TE23355; Alias=ATREP2
AT1G20800.1	chr1:007228718	0.0	C/7228718-7229648,7229909-7230240	AT1G20800.1 CDS AT1G20800 ID=AT1G20800.1; Parent=AT1G20800; Name=AT1G20800.1; Note=F-box/associated interaction domain protein; curator_summary=F-box family protein; conf_class=4; computational_description=F-box family protein%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%3B BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G20795.1)%3B Has 109 Blast hits to 52 proteins in 4 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 109%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:20226671, locus:2030492; locus_type=protein_coding
AT1G20803.1	chr1:007231049	0.0	C/7231049-7231600	AT1G20803.1 CDS AT1G20803 ID=AT1G20803.1; Parent=AT1G20803; Name=AT1G20803.1; Note=F-box/associated interaction domain protein; locus_type=protein_coding
AT1G20810.1	chr1:007232025	0.0	W/7232025-7232289,7232551-7232621,7232717-7232803,7232883-7233032,7233119-7233178,7233302-7233367	AT1G20810.1 CDS AT1G20810 ID=AT1G20810.1; Parent=AT1G20810; Name=AT1G20810.1; Note=FKBP-like peptidyl-prolyl cis-trans isomerase family protein; conf_class=2; computational_description=FKBP-like peptidyl-prolyl cis-trans isomerase family protein%3B FUNCTIONS IN: FK506 binding%2C peptidyl-prolyl cis-trans isomerase activity%3B INVOLVED IN: protein folding%3B LOCATED IN: thylakoid lumen%2C chloroplast thylakoid lumen%2C chloroplast%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase%2C FKBP-type (InterPro:IPR001179)%3B BEST Arabidopsis thaliana protein match is: FKBP-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT3G10060.1)%3B Has 1763 Blast hits to 1744 proteins in 606 species: Archae - 0%3B Bacteria - 1027%3B Metazoa - 95%3B Fungi - 57%3B Plants - 263%3B Viruses - 0%3B Other Eukaryotes - 321 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11719511, PMID:11983057, PMID:12432076, PMID:12649433, PMID:14576160, PMID:15047905, PMID:16923014, PMID:18431481, PMID:18650403, PMID:20736450, locus:2030502; locus_type=protein_coding
AT1G20810.2	chr1:007232025	0.0	W/7232025-7232289,7232551-7232621,7232717-7232803,7232883-7233032,7233119-7233235	AT1G20810.2 CDS AT1G20810 ID=AT1G20810.2; Parent=AT1G20810; Name=AT1G20810.2; Note=FKBP-like peptidyl-prolyl cis-trans isomerase family protein; computational_description=FKBP-like peptidyl-prolyl cis-trans isomerase family protein%3B FUNCTIONS IN: FK506 binding%2C peptidyl-prolyl cis-trans isomerase activity%3B INVOLVED IN: protein folding%3B LOCATED IN: thylakoid lumen%2C chloroplast thylakoid lumen%2C chloroplast%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase%2C FKBP-type (InterPro:IPR001179)%3B BEST Arabidopsis thaliana protein match is: FKBP-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT3G10060.1)%3B Has 1763 Blast hits to 1744 proteins in 606 species: Archae - 0%3B Bacteria - 1027%3B Metazoa - 95%3B Fungi - 57%3B Plants - 263%3B Viruses - 0%3B Other Eukaryotes - 321 (source: NCBI BLink).; Dbxref=PMID:11719511, PMID:11983057, PMID:12432076, PMID:12649433, PMID:14576160, PMID:15047905, PMID:16923014, PMID:18431481, PMID:18650403, PMID:20736450, locus:2030502; locus_type=protein_coding
AT1G20816.1	chr1:007233814	0.0	W/7233814-7233906,7234275-7234349,7234430-7234582,7234671-7234769,7234858-7234941	AT1G20816.1 CDS AT1G20816 ID=AT1G20816.1; Parent=AT1G20816; Name=AT1G20816.1; Note=outer envelope pore-like protein; conf_class=2; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76405.2)%3B Has 52 Blast hits to 52 proteins in 19 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 50%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2825702; locus_type=protein_coding
AT1G20823.1	chr1:007238880	0.0	W/7238880-7239473	AT1G20823.1 CDS AT1G20823 ID=AT1G20823.1; Parent=AT1G20823; Name=AT1G20823.1; Note=RING/U-box superfamily protein; conf_class=1; computational_description=RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B INVOLVED IN: response to chitin%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G76410.1)%3B Has 9063 Blast hits to 9039 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2341%3B Fungi - 637%3B Plants - 4964%3B Viruses - 26%3B Other Eukaryotes - 1095 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:17722694, locus:2825708; locus_type=protein_coding
AT1TE23390	chr1:007241159	0.0	W/7241159-7241362	AT1TE23390 transposable_element AT1TE23390 ID=AT1TE23390; Name=AT1TE23390; Alias=RP1_AT
AT1TE23395	chr1:007241363	0.0	W/7241363-7241617	AT1TE23395 transposable_element AT1TE23395 ID=AT1TE23395; Name=AT1TE23395; Alias=RP1_AT
AT1G20820.1	chr1:007242761	0.0	C/7242761-7242832	AT1G20820.1 tRNA AT1G20820 ID=AT1G20820.1; Parent=AT1G20820; Note=tRNA-Trp; computational_description=tRNA-Trp (anticodon: CCA); Dbxref=PMID:8980477, PMID:19135368, PMID:23066098, PMID:8980477, PMID:19135368, locus:3690297; Name=AT1G20820.1; locus_type=pre_trna
AT1G20830.1	chr1:007242933	0.0	W/7242933-7242980,7243103-7243384,7243754-7243926,7244095-7244482,7244578-7244736	AT1G20830.1 CDS AT1G20830 ID=AT1G20830.1; Parent=AT1G20830; Name=AT1G20830.1; Note=multiple chloroplast division site 1; curator_summary=Encodes MCD1 (MULTIPLE CHLOROPLAST DIVISION SITE 1). Determines the site of chloroplast division in concert with MinD (AT5G24020).; conf_class=2; symbol=MCD1; full_name=MULTIPLE CHLOROPLAST DIVISION SITE 1; computational_description=MULTIPLE CHLOROPLAST DIVISION SITE 1 (MCD1)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: chloroplast fission%3B LOCATED IN: chloroplast inner membrane%2C chloroplast envelope%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B Has 38 Blast hits to 38 proteins in 12 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 38%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12766230, PMID:14576160, PMID:19135368, PMID:19907699, PMID:23936263, locus:2030512; locus_type=protein_coding
AT1G20830.2	chr1:007243352	0.0	W/7243352-7243384,7243754-7243926,7244095-7244482,7244578-7244736	AT1G20830.2 CDS AT1G20830 ID=AT1G20830.2; Parent=AT1G20830; Name=AT1G20830.2; Note=multiple chloroplast division site 1; symbol=MCD1; full_name=MULTIPLE CHLOROPLAST DIVISION SITE 1; curator_summary=Encodes MCD1 (MULTIPLE CHLOROPLAST DIVISION SITE 1). Determines the site of chloroplast division in concert with MinD (AT5G24020).; computational_description=MULTIPLE CHLOROPLAST DIVISION SITE 1 (MCD1)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: chloroplast fission%3B LOCATED IN: chloroplast inner membrane%2C chloroplast envelope%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B Has 38 Blast hits to 38 proteins in 12 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 38%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=PMID:12766230, PMID:14576160, PMID:19135368, PMID:19907699, PMID:23936263, locus:2030512; locus_type=protein_coding
AT1G20840.1	chr1:007245107	0.0	C/7245107-7245557,7245641-7245828,7245923-7246848,7246927-7247487,7247596-7247674	AT1G20840.1 CDS AT1G20840 ID=AT1G20840.1; Parent=AT1G20840; Name=AT1G20840.1; Note=tonoplast monosaccharide transporter1; curator_summary=The protein encoded by this gene is found in the tonoplast (vacuole membrane) of Arabidopsis cells. The gene is expressed at highest levels in juvenile (sink) and adult (source) leaves%2C followed by flower tissues.; conf_class=2; symbol=TMT1; Alias=AtTMT1; full_name=tonoplast monosaccharide transporter1; computational_description=tonoplast monosaccharide transporter1 (TMT1)%3B FUNCTIONS IN: carbohydrate transmembrane transporter activity%2C sugar:hydrogen symporter activity%2C nucleoside transmembrane transporter activity%3B INVOLVED IN: in 6 processes%3B LOCATED IN: plant-type vacuole membrane%2C plasma membrane%2C vacuole%2C membrane%3B EXPRESSED IN: 30 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Sugar transporter%2C conserved site (InterPro:IPR005829)%2C Major facilitator superfamily (InterPro:IPR020846)%2C General substrate transporter (InterPro:IPR005828)%2C Sugar/inositol transporter (InterPro:IPR003663)%2C Major facilitator superfamily%2C general substrate transporter (InterPro:IPR016196)%3B BEST Arabidopsis thaliana protein match is: tonoplast monosaccharide transporter2 (TAIR:AT4G35300.4)%3B Has 47782 Blast hits to 35006 proteins in 2411 species: Archae - 763%3B Bacteria - 22324%3B Metazoa - 7189%3B Fungi - 11789%3B Plants - 3723%3B Viruses - 0%3B Other Eukaryotes - 1994 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15539469, PMID:16478044, PMID:16581873, PMID:16798886, PMID:17158605, PMID:18441213, PMID:18702670, PMID:18775970, PMID:20736450, PMID:20709831, PMID:21668536, PMID:21838775, PMID:23054470, locus:2030377; locus_type=protein_coding
AT1G20840.2	chr1:007245107	0.0	C/7245107-7245557,7245641-7245828,7245923-7246848,7246927-7247487,7247596-7247674	AT1G20840.2 CDS AT1G20840 ID=AT1G20840.2; Parent=AT1G20840; Name=AT1G20840.2; Note=tonoplast monosaccharide transporter1; symbol=TMT1; Alias=AtTMT1; full_name=tonoplast monosaccharide transporter1; Dbxref=PMID:15539469, PMID:16478044, PMID:16581873, PMID:16798886, PMID:17158605, PMID:18441213, PMID:18702670, PMID:18775970, PMID:20736450, PMID:20709831, PMID:21668536, PMID:21838775, PMID:23054470, locus:2030377; curator_summary=The protein encoded by this gene is found in the tonoplast (vacuole membrane) of Arabidopsis cells. The gene is expressed at highest levels in juvenile (sink) and adult (source) leaves%2C followed by flower tissues.; computational_description=tonoplast monosaccharide transporter1 (TMT1)%3B FUNCTIONS IN: carbohydrate transmembrane transporter activity%2C sugar:hydrogen symporter activity%2C nucleoside transmembrane transporter activity%3B INVOLVED IN: in 6 processes%3B LOCATED IN: plant-type vacuole membrane%2C plasma membrane%2C vacuole%2C membrane%3B EXPRESSED IN: 30 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Sugar transporter%2C conserved site (InterPro:IPR005829)%2C Major facilitator superfamily (InterPro:IPR020846)%2C General substrate transporter (InterPro:IPR005828)%2C Sugar/inositol transporter (InterPro:IPR003663)%2C Major facilitator superfamily%2C general substrate transporter (InterPro:IPR016196)%3B BEST Arabidopsis thaliana protein match is: tonoplast monosaccharide transporter2 (TAIR:AT4G35300.4)%3B Has 47782 Blast hits to 35006 proteins in 2411 species: Archae - 763%3B Bacteria - 22324%3B Metazoa - 7189%3B Fungi - 11789%3B Plants - 3723%3B Viruses - 0%3B Other Eukaryotes - 1994 (source: NCBI BLink).; locus_type=protein_coding
AT1G05607.1	chr1:007248291	0.0	W/7248291-7248588	AT1G05607.1 lnc_RNA AT1G05607 ID=AT1G05607.1; Parent=AT1G05607; Name=AT1G05607.1; locus_type=long_noncoding_rna
AT1TE23410	chr1:007248747	0.0	C/7248747-7250145	AT1TE23410 transposable_element AT1TE23410 ID=AT1TE23410; Name=AT1TE23410; Alias=ATREP1
AT1G20850.1	chr1:007252208	0.0	W/7252208-7252685,7252772-7253007,7253090-7253230,7253322-7253537	AT1G20850.1 CDS AT1G20850 ID=AT1G20850.1; Parent=AT1G20850; Name=AT1G20850.1; Note=xylem cysteine peptidase 2; conf_class=2; symbol=XCP2; full_name=xylem cysteine peptidase 2; computational_description=xylem cysteine peptidase 2 (XCP2)%3B FUNCTIONS IN: cysteine-type peptidase activity%2C peptidase activity%3B INVOLVED IN: proteolysis%2C developmental programmed cell death%3B LOCATED IN: cell wall%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase C1A%2C papain (InterPro:IPR013128)%2C Proteinase inhibitor I29%2C cathepsin propeptide (InterPro:IPR013201)%2C Peptidase C1A%2C papain C-terminal (InterPro:IPR000668)%2C Peptidase%2C cysteine peptidase active site (InterPro:IPR000169)%3B BEST Arabidopsis thaliana protein match is: xylem cysteine peptidase 1 (TAIR:AT4G35350.1)%3B Has 7701 Blast hits to 7638 proteins in 709 species: Archae - 59%3B Bacteria - 219%3B Metazoa - 3282%3B Fungi - 4%3B Plants - 1889%3B Viruses - 133%3B Other Eukaryotes - 2115 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10889267, PMID:14585825, PMID:14697270, PMID:15272873, PMID:15763661, PMID:15593128, PMID:15923329, PMID:16061508, PMID:16081527, PMID:16214898, PMID:16299169, PMID:16367961, PMID:16927204, PMID:17565617, PMID:17890373, PMID:18573193, PMID:20736450, PMID:24947605, locus:2030427; locus_type=protein_coding
AT1G20860.1	chr1:007254007	0.0	C/7254007-7254925,7257992-7258677	AT1G20860.1 CDS AT1G20860 ID=AT1G20860.1; Parent=AT1G20860; Name=AT1G20860.1; Note=phosphate transporter 1%3B8; curator_summary=Encodes Pht1%3B8%2C a member of the Pht1 family of phosphate transporters which include: Pht1%3B1/At5g43350%2C Pht1%3B2/At5g43370%2C Pht1%3B3/At5g43360%2C Pht1%3B4/At2g38940%2C Pht1%3B5/At2g32830%2C Pht1%3B6/At5g43340%2C Pht1%3B7/At3g54700%2C Pht1%3B8/At1g20860%2C Pht1%3B9/At1g76430 (Plant Journal 2002%2C 31:341).; conf_class=1; symbol=PHT1%3B8; full_name=phosphate transporter 1%3B8; computational_description=phosphate transporter 1%3B8 (PHT1%3B8)%3B FUNCTIONS IN: phosphate transmembrane transporter activity%2C carbohydrate transmembrane transporter activity%2C sugar:hydrogen symporter activity%3B INVOLVED IN: transport%2C transmembrane transport%3B LOCATED IN: integral to membrane%2C membrane%3B CONTAINS InterPro DOMAIN/s: Sugar transporter%2C conserved site (InterPro:IPR005829)%2C Major facilitator superfamily (InterPro:IPR020846)%2C General substrate transporter (InterPro:IPR005828)%2C Major facilitator superfamily%2C general substrate transporter (InterPro:IPR016196)%3B BEST Arabidopsis thaliana protein match is: phosphate transporter 1%3B9 (TAIR:AT1G76430.1)%3B Has 29417 Blast hits to 29300 proteins in 2177 species: Archae - 688%3B Bacteria - 21243%3B Metazoa - 1648%3B Fungi - 3510%3B Plants - 1450%3B Viruses - 0%3B Other Eukaryotes - 878 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12119378, PMID:12164813, PMID:15075387, PMID:16679417, PMID:17562688, PMID:22578268, PMID:25428623, PMID:25697796, locus:2037390; locus_type=protein_coding
AT1G20860.2	chr1:007254007	0.0	C/7254007-7254925,7257992-7258833	AT1G20860.2 CDS AT1G20860 ID=AT1G20860.2; Parent=AT1G20860; Name=AT1G20860.2; Note=phosphate transporter 1%3B8; symbol=PHT1%3B8; full_name=phosphate transporter 1%3B8; curator_summary=Encodes Pht1%3B8%2C a member of the Pht1 family of phosphate transporters which include: Pht1%3B1/At5g43350%2C Pht1%3B2/At5g43370%2C Pht1%3B3/At5g43360%2C Pht1%3B4/At2g38940%2C Pht1%3B5/At2g32830%2C Pht1%3B6/At5g43340%2C Pht1%3B7/At3g54700%2C Pht1%3B8/At1g20860%2C Pht1%3B9/At1g76430 (Plant Journal 2002%2C 31:341).; computational_description=phosphate transporter 1%3B8 (PHT1%3B8)%3B FUNCTIONS IN: phosphate transmembrane transporter activity%2C carbohydrate transmembrane transporter activity%2C sugar:hydrogen symporter activity%3B INVOLVED IN: transport%2C transmembrane transport%3B LOCATED IN: integral to membrane%2C membrane%3B CONTAINS InterPro DOMAIN/s: Sugar transporter%2C conserved site (InterPro:IPR005829)%2C Major facilitator superfamily (InterPro:IPR020846)%2C General substrate transporter (InterPro:IPR005828)%2C Major facilitator superfamily%2C general substrate transporter (InterPro:IPR016196)%3B BEST Arabidopsis thaliana protein match is: phosphate transporter 1%3B9 (TAIR:AT1G76430.1)%3B Has 29417 Blast hits to 29300 proteins in 2177 species: Archae - 688%3B Bacteria - 21243%3B Metazoa - 1648%3B Fungi - 3510%3B Plants - 1450%3B Viruses - 0%3B Other Eukaryotes - 878 (source: NCBI BLink).; Dbxref=PMID:12119378, PMID:12164813, PMID:15075387, PMID:16679417, PMID:17562688, PMID:22578268, PMID:25428623, PMID:25697796, locus:2037390; locus_type=protein_coding
AT1TE23420	chr1:007254947	0.0	C/7254947-7256001,7255971-7257226	AT1TE23420 transposable_element AT1TE23420 ID=AT1TE23420; Name=AT1TE23420; Alias=VANDAL1N1
AT1G20870.1	chr1:007259287	0.0	C/7259287-7259531,7259629-7260775	AT1G20870.1 CDS AT1G20870 ID=AT1G20870.1; Parent=AT1G20870; Name=AT1G20870.1; Note=HSP20-like chaperones superfamily protein; conf_class=2; Alias=IDM3, Increased DNA Methylation 3; computational_description=HSP20-like chaperones superfamily protein%3B CONTAINS InterPro DOMAIN/s: HSP20-like chaperone (InterPro:IPR008978)%3B BEST Arabidopsis thaliana protein match is: HSP20-like chaperones superfamily protein (TAIR:AT1G54850.1)%3B Has 109 Blast hits to 81 proteins in 18 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1%3B Fungi - 0%3B Plants - 99%3B Viruses - 0%3B Other Eukaryotes - 9 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16531488, PMID:25684209, locus:2037380; locus_type=protein_coding
AT1G20870.2	chr1:007259287	0.0	C/7259287-7259531,7259629-7260775	AT1G20870.2 CDS AT1G20870 ID=AT1G20870.2; Parent=AT1G20870; Name=AT1G20870.2; Note=HSP20-like chaperones superfamily protein; Alias=IDM3, Increased DNA Methylation 3; Dbxref=PMID:16531488, PMID:25684209, locus:2037380; computational_description=HSP20-like chaperones superfamily protein%3B CONTAINS InterPro DOMAIN/s: HSP20-like chaperone (InterPro:IPR008978)%3B BEST Arabidopsis thaliana protein match is: HSP20-like chaperones superfamily protein (TAIR:AT1G54850.1)%3B Has 109 Blast hits to 81 proteins in 18 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1%3B Fungi - 0%3B Plants - 99%3B Viruses - 0%3B Other Eukaryotes - 9 (source: NCBI BLink).; locus_type=protein_coding
AT1G20875.1	chr1:007261481	0.0	W/7261481-7261681	AT1G20875.1 CDS AT1G20875 ID=AT1G20875.1; Parent=AT1G20875; Name=AT1G20875.1; Note=hypothetical protein; conf_class=10; computational_description=unknown protein%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=PMID:17395691, locus:4515102556; locus_type=protein_coding
AT1G20880.1	chr1:007262879	0.0	C/7262879-7263181,7263285-7263327,7263871-7263997,7264140-7264284,7264628-7264834	AT1G20880.1 CDS AT1G20880 ID=AT1G20880.1; Parent=AT1G20880; Name=AT1G20880.1; Note=RNA-binding (RRM/RBD/RNP motifs) family protein; conf_class=2; computational_description=RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G76460.1)%3B Has 7701 Blast hits to 7638 proteins in 709 species: Archae - 59%3B Bacteria - 219%3B Metazoa - 3282%3B Fungi - 4%3B Plants - 1889%3B Viruses - 133%3B Other Eukaryotes - 2115 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, locus:2037370; locus_type=protein_coding
AT1G20880.2	chr1:007262879	0.0	C/7262879-7263181,7263285-7263327,7263871-7263997,7264140-7264284,7264628-7264834	AT1G20880.2 CDS AT1G20880 ID=AT1G20880.2; Parent=AT1G20880; Name=AT1G20880.2; Note=RNA-binding (RRM/RBD/RNP motifs) family protein; conf_class=2; computational_description=RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G76460.1)%3B Has 7701 Blast hits to 7638 proteins in 709 species: Archae - 59%3B Bacteria - 219%3B Metazoa - 3282%3B Fungi - 4%3B Plants - 1889%3B Viruses - 133%3B Other Eukaryotes - 2115 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, locus:2037370; locus_type=protein_coding
AT1G20880.3	chr1:007262879	0.0	C/7262879-7263181,7263285-7263327,7263871-7263997,7264140-7264284,7264628-7264834	AT1G20880.3 CDS AT1G20880 ID=AT1G20880.3; Parent=AT1G20880; Name=AT1G20880.3; Note=RNA-binding (RRM/RBD/RNP motifs) family protein; Dbxref=PMID:18775970, locus:2037370; computational_description=RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G76460.1)%3B Has 7701 Blast hits to 7638 proteins in 709 species: Archae - 59%3B Bacteria - 219%3B Metazoa - 3282%3B Fungi - 4%3B Plants - 1889%3B Viruses - 133%3B Other Eukaryotes - 2115 (source: NCBI BLink).; locus_type=protein_coding
AT1G20890.1	chr1:007266088	0.0	C/7266088-7266230,7266342-7266432,7266513-7266644,7266737-7266875,7266972-7267060	AT1G20890.1 CDS AT1G20890 ID=AT1G20890.1; Parent=AT1G20890; Name=AT1G20890.1; Note=caveolin-1 protein; conf_class=2; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76480.2)%3B Has 33 Blast hits to 33 proteins in 11 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2%3B Fungi - 0%3B Plants - 31%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16829591, PMID:18775970, locus:2037360; locus_type=protein_coding
AT1G20890.2	chr1:007266274	0.0	C/7266274-7266432,7266513-7266644,7266737-7266875,7266972-7267060	AT1G20890.2 CDS AT1G20890 ID=AT1G20890.2; Parent=AT1G20890; Name=AT1G20890.2; Note=caveolin-1 protein; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76480.2)%3B Has 33 Blast hits to 33 proteins in 11 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2%3B Fungi - 0%3B Plants - 31%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=PMID:16829591, PMID:18775970, locus:2037360; locus_type=protein_coding
AT1G20900.1	chr1:007273024	0.0	W/7273024-7273959	AT1G20900.1 CDS AT1G20900 ID=AT1G20900.1; Parent=AT1G20900; Name=AT1G20900.1; Note=Putative AT-hook DNA-binding family protein; curator_summary=Encodes an AT hook domain containing protein that acts redundantly with SOB3 to modulate hypocotyl growth inhibition in response to light.; conf_class=1; symbol=ESC; Alias=AHL27, AT-hook motif nuclear-localized protein 27, ORE7, ORESARA 7; full_name=ESCAROLA; computational_description=ESCAROLA (ESC)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175)%2C Predicted AT-hook DNA-binding (InterPro:IPR014476)%3B BEST Arabidopsis thaliana protein match is: Predicted AT-hook DNA-binding family protein (TAIR:AT1G76500.1)%3B Has 2335 Blast hits to 2120 proteins in 205 species: Archae - 0%3B Bacteria - 577%3B Metazoa - 531%3B Fungi - 95%3B Plants - 869%3B Viruses - 15%3B Other Eukaryotes - 248 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:17971039, PMID:18088311, PMID:19517252, PMID:20738724, PMID:20736450, PMID:22995285, PMID:24218605, locus:2037350; locus_type=protein_coding
AT1G08945.1	chr1:007274575	0.0	W/7274575-7275117	AT1G08945.1 transcript_region AT1G08945 ID=AT1G08945.1; Parent=AT1G08945; computational_description=novel transcribed region; Name=AT1G08945.1; locus_type=novel_transcribed_region
AT1G20910.1	chr1:007277209	0.0	C/7277209-7277304,7277397-7277489,7277732-7277782,7277894-7277960,7278131-7278194,7278272-7278320,7278476-7278598,7279041-7279133,7279392-7279437,7279534-7279586,7279956-7279995,7280081-7280214,7280348-7280635	AT1G20910.1 CDS AT1G20910 ID=AT1G20910.1; Parent=AT1G20910; Name=AT1G20910.1; Note=ARID/BRIGHT DNA-binding domain-containing protein; conf_class=2; computational_description=ARID/BRIGHT DNA-binding domain-containing protein%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: intracellular%3B EXPRESSED IN: 19 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068)%2C HSP20-like chaperone (InterPro:IPR008978)%2C ARID/BRIGHT DNA-binding domain (InterPro:IPR001606)%3B BEST Arabidopsis thaliana protein match is: ARID/BRIGHT DNA-binding domain-containing protein (TAIR:AT1G76510.2)%3B Has 727 Blast hits to 727 proteins in 115 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 457%3B Fungi - 67%3B Plants - 164%3B Viruses - 0%3B Other Eukaryotes - 39 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:16531488, locus:2037345; locus_type=protein_coding
AT1G20910.2	chr1:007277319	0.0	C/7277319-7277489,7277732-7277782,7277894-7277960,7278131-7278194,7278272-7278320,7278476-7278598,7279041-7279133,7279392-7279437,7279534-7279586,7279956-7279995,7280081-7280214,7280348-7280635	AT1G20910.2 CDS AT1G20910 ID=AT1G20910.2; Parent=AT1G20910; Name=AT1G20910.2; Note=ARID/BRIGHT DNA-binding domain-containing protein; computational_description=ARID/BRIGHT DNA-binding domain-containing protein%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: intracellular%3B EXPRESSED IN: 19 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068)%2C HSP20-like chaperone (InterPro:IPR008978)%2C ARID/BRIGHT DNA-binding domain (InterPro:IPR001606)%3B BEST Arabidopsis thaliana protein match is: ARID/BRIGHT DNA-binding domain-containing protein (TAIR:AT1G76510.2)%3B Has 727 Blast hits to 727 proteins in 115 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 457%3B Fungi - 67%3B Plants - 164%3B Viruses - 0%3B Other Eukaryotes - 39 (source: NCBI BLink).; Dbxref=PMID:11118137, PMID:16531488, locus:2037345; locus_type=protein_coding
AT1TE23500	chr1:007281215	0.0	W/7281215-7281533	AT1TE23500 transposable_element AT1TE23500 ID=AT1TE23500; Name=AT1TE23500; Alias=HELITRONY3
AT1TE23505	chr1:007281534	0.0	W/7281534-7284779	AT1TE23505 transposable_element AT1TE23505 ID=AT1TE23505; Name=AT1TE23505; Alias=ATREP5
AT1TE23510	chr1:007284780	0.0	W/7284780-7284911	AT1TE23510 transposable_element AT1TE23510 ID=AT1TE23510; Name=AT1TE23510; Alias=HELITRONY3
AT1TE23515	chr1:007284912	0.0	W/7284912-7284990	AT1TE23515 transposable_element AT1TE23515 ID=AT1TE23515; Name=AT1TE23515; Alias=ATREP15
AT1G20920.1	chr1:007285342	0.0	W/7285342-7288842	AT1G20920.1 CDS AT1G20920 ID=AT1G20920.1; Parent=AT1G20920; Name=AT1G20920.1; Note=P-loop containing nucleoside triphosphate hydrolases superfamily protein; conf_class=2; Alias=RCF1, regulator of CBF gene expression 1; computational_description=P-loop containing nucleoside triphosphate hydrolases superfamily protein%3B FUNCTIONS IN: helicase activity%2C nucleic acid binding%2C ATP-dependent helicase activity%2C ATP binding%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (InterPro:IPR011545)%2C RNA helicase%2C DEAD-box type%2C Q motif (InterPro:IPR014014)%2C RNA helicase%2C ATP-dependent%2C DEAD-box%2C conserved site (InterPro:IPR000629)%2C DEAD-like helicase%2C N-terminal (InterPro:IPR014001)%2C DNA/RNA helicase%2C C-terminal (InterPro:IPR001650)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain (InterPro:IPR014021)%3B BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G09620.1)%3B Has 370658 Blast hits to 166919 proteins in 4473 species: Archae - 2452%3B Bacteria - 63379%3B Metazoa - 145404%3B Fungi - 45975%3B Plants - 23206%3B Viruses - 1711%3B Other Eukaryotes - 88531 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15345049, PMID:18775970, PMID:23371945, locus:2037416; locus_type=protein_coding
AT1G20920.3	chr1:007285342	0.0	W/7285342-7288842	AT1G20920.3 CDS AT1G20920 ID=AT1G20920.3; Parent=AT1G20920; Name=AT1G20920.3; Note=P-loop containing nucleoside triphosphate hydrolases superfamily protein; Alias=RCF1, regulator of CBF gene expression 1; Dbxref=PMID:15345049, PMID:18775970, PMID:23371945, locus:2037416; computational_description=P-loop containing nucleoside triphosphate hydrolases superfamily protein%3B FUNCTIONS IN: helicase activity%2C nucleic acid binding%2C ATP-dependent helicase activity%2C ATP binding%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (InterPro:IPR011545)%2C RNA helicase%2C DEAD-box type%2C Q motif (InterPro:IPR014014)%2C RNA helicase%2C ATP-dependent%2C DEAD-box%2C conserved site (InterPro:IPR000629)%2C DEAD-like helicase%2C N-terminal (InterPro:IPR014001)%2C DNA/RNA helicase%2C C-terminal (InterPro:IPR001650)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain (InterPro:IPR014021)%3B BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G09620.1)%3B Has 370658 Blast hits to 166919 proteins in 4473 species: Archae - 2452%3B Bacteria - 63379%3B Metazoa - 145404%3B Fungi - 45975%3B Plants - 23206%3B Viruses - 1711%3B Other Eukaryotes - 88531 (source: NCBI BLink).; locus_type=protein_coding
AT1G20920.4	chr1:007285342	0.0	W/7285342-7288842	AT1G20920.4 CDS AT1G20920 ID=AT1G20920.4; Parent=AT1G20920; Name=AT1G20920.4; Note=P-loop containing nucleoside triphosphate hydrolases superfamily protein; Alias=RCF1, regulator of CBF gene expression 1; Dbxref=PMID:15345049, PMID:18775970, PMID:23371945, locus:2037416; computational_description=P-loop containing nucleoside triphosphate hydrolases superfamily protein%3B FUNCTIONS IN: helicase activity%2C nucleic acid binding%2C ATP-dependent helicase activity%2C ATP binding%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (InterPro:IPR011545)%2C RNA helicase%2C DEAD-box type%2C Q motif (InterPro:IPR014014)%2C RNA helicase%2C ATP-dependent%2C DEAD-box%2C conserved site (InterPro:IPR000629)%2C DEAD-like helicase%2C N-terminal (InterPro:IPR014001)%2C DNA/RNA helicase%2C C-terminal (InterPro:IPR001650)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain (InterPro:IPR014021)%3B BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G09620.1)%3B Has 370658 Blast hits to 166919 proteins in 4473 species: Archae - 2452%3B Bacteria - 63379%3B Metazoa - 145404%3B Fungi - 45975%3B Plants - 23206%3B Viruses - 1711%3B Other Eukaryotes - 88531 (source: NCBI BLink).; locus_type=protein_coding
AT1G20920.5	chr1:007285342	0.0	W/7285342-7288842	AT1G20920.5 CDS AT1G20920 ID=AT1G20920.5; Parent=AT1G20920; Name=AT1G20920.5; Note=P-loop containing nucleoside triphosphate hydrolases superfamily protein; Alias=RCF1, regulator of CBF gene expression 1; Dbxref=PMID:15345049, PMID:18775970, PMID:23371945, locus:2037416; computational_description=P-loop containing nucleoside triphosphate hydrolases superfamily protein%3B FUNCTIONS IN: helicase activity%2C nucleic acid binding%2C ATP-dependent helicase activity%2C ATP binding%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (InterPro:IPR011545)%2C RNA helicase%2C DEAD-box type%2C Q motif (InterPro:IPR014014)%2C RNA helicase%2C ATP-dependent%2C DEAD-box%2C conserved site (InterPro:IPR000629)%2C DEAD-like helicase%2C N-terminal (InterPro:IPR014001)%2C DNA/RNA helicase%2C C-terminal (InterPro:IPR001650)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain (InterPro:IPR014021)%3B BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G09620.1)%3B Has 370658 Blast hits to 166919 proteins in 4473 species: Archae - 2452%3B Bacteria - 63379%3B Metazoa - 145404%3B Fungi - 45975%3B Plants - 23206%3B Viruses - 1711%3B Other Eukaryotes - 88531 (source: NCBI BLink).; locus_type=protein_coding
AT1G20920.6	chr1:007285342	0.0	W/7285342-7288842	AT1G20920.6 CDS AT1G20920 ID=AT1G20920.6; Parent=AT1G20920; Name=AT1G20920.6; Note=P-loop containing nucleoside triphosphate hydrolases superfamily protein; Alias=RCF1, regulator of CBF gene expression 1; Dbxref=PMID:15345049, PMID:18775970, PMID:23371945, locus:2037416; computational_description=P-loop containing nucleoside triphosphate hydrolases superfamily protein%3B FUNCTIONS IN: helicase activity%2C nucleic acid binding%2C ATP-dependent helicase activity%2C ATP binding%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (InterPro:IPR011545)%2C RNA helicase%2C DEAD-box type%2C Q motif (InterPro:IPR014014)%2C RNA helicase%2C ATP-dependent%2C DEAD-box%2C conserved site (InterPro:IPR000629)%2C DEAD-like helicase%2C N-terminal (InterPro:IPR014001)%2C DNA/RNA helicase%2C C-terminal (InterPro:IPR001650)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain (InterPro:IPR014021)%3B BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G09620.1)%3B Has 370658 Blast hits to 166919 proteins in 4473 species: Archae - 2452%3B Bacteria - 63379%3B Metazoa - 145404%3B Fungi - 45975%3B Plants - 23206%3B Viruses - 1711%3B Other Eukaryotes - 88531 (source: NCBI BLink).; locus_type=protein_coding
AT1G20920.7	chr1:007285342	0.0	W/7285342-7288842	AT1G20920.7 CDS AT1G20920 ID=AT1G20920.7; Parent=AT1G20920; Name=AT1G20920.7; Note=P-loop containing nucleoside triphosphate hydrolases superfamily protein; Alias=RCF1, regulator of CBF gene expression 1; Dbxref=PMID:15345049, PMID:18775970, PMID:23371945, locus:2037416; computational_description=P-loop containing nucleoside triphosphate hydrolases superfamily protein%3B FUNCTIONS IN: helicase activity%2C nucleic acid binding%2C ATP-dependent helicase activity%2C ATP binding%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (InterPro:IPR011545)%2C RNA helicase%2C DEAD-box type%2C Q motif (InterPro:IPR014014)%2C RNA helicase%2C ATP-dependent%2C DEAD-box%2C conserved site (InterPro:IPR000629)%2C DEAD-like helicase%2C N-terminal (InterPro:IPR014001)%2C DNA/RNA helicase%2C C-terminal (InterPro:IPR001650)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain (InterPro:IPR014021)%3B BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G09620.1)%3B Has 370658 Blast hits to 166919 proteins in 4473 species: Archae - 2452%3B Bacteria - 63379%3B Metazoa - 145404%3B Fungi - 45975%3B Plants - 23206%3B Viruses - 1711%3B Other Eukaryotes - 88531 (source: NCBI BLink).; locus_type=protein_coding
AT1TE23520	chr1:007285421	0.0	C/7285421-7286126	AT1TE23520 transposable_element AT1TE23520 ID=AT1TE23520; Name=AT1TE23520; Alias=VANDAL17
AT1TE23525	chr1:007286127	0.0	C/7286127-7286289	AT1TE23525 transposable_element AT1TE23525 ID=AT1TE23525; Name=AT1TE23525; Alias=VANDAL17
AT1G20920.2	chr1:007286356	0.0	W/7286356-7288842	AT1G20920.2 CDS AT1G20920 ID=AT1G20920.2; Parent=AT1G20920; Name=AT1G20920.2; Note=P-loop containing nucleoside triphosphate hydrolases superfamily protein; conf_class=2; Alias=RCF1, regulator of CBF gene expression 1; computational_description=P-loop containing nucleoside triphosphate hydrolases superfamily protein%3B FUNCTIONS IN: helicase activity%2C nucleic acid binding%2C ATP-dependent helicase activity%2C ATP binding%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (InterPro:IPR011545)%2C RNA helicase%2C DEAD-box type%2C Q motif (InterPro:IPR014014)%2C RNA helicase%2C ATP-dependent%2C DEAD-box%2C conserved site (InterPro:IPR000629)%2C DEAD-like helicase%2C N-terminal (InterPro:IPR014001)%2C DNA/RNA helicase%2C C-terminal (InterPro:IPR001650)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain (InterPro:IPR014021)%3B BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G09620.1)%3B Has 370658 Blast hits to 166919 proteins in 4473 species: Archae - 2452%3B Bacteria - 63379%3B Metazoa - 145404%3B Fungi - 45975%3B Plants - 23206%3B Viruses - 1711%3B Other Eukaryotes - 88531 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15345049, PMID:18775970, PMID:23371945, locus:2037416; locus_type=protein_coding
AT1G20923.1	chr1:007289730	0.0	C/7289730-7289861,7290310-7290390	AT1G20923.1 CDS AT1G20923 ID=AT1G20923.1; Parent=AT1G20923; Name=AT1G20923.1; Note=hypothetical protein; locus_type=protein_coding
AT1G20925.1	chr1:007289973	0.0	W/7289973-7290163,7290412-7290478,7290612-7290752,7290831-7290910,7290983-7291107,7291182-7291303,7291399-7291533,7291610-7291702,7291793-7291893,7291973-7292025,7292114-7292299,7292383-7292507	AT1G20925.1 CDS AT1G20925 ID=AT1G20925.1; Parent=AT1G20925; Name=AT1G20925.1; Note=Auxin efflux carrier family protein; conf_class=6; Alias=PILS1, PIN-LIKES 1; computational_description=Auxin efflux carrier family protein%3B FUNCTIONS IN: auxin:hydrogen symporter activity%3B INVOLVED IN: auxin polar transport%2C transmembrane transport%3B LOCATED IN: integral to membrane%3B CONTAINS InterPro DOMAIN/s: Auxin efflux carrier (InterPro:IPR004776)%3B BEST Arabidopsis thaliana protein match is: Auxin efflux carrier family protein (TAIR:AT1G76520.2)%3B Has 641 Blast hits to 607 proteins in 137 species: Archae - 6%3B Bacteria - 69%3B Metazoa - 0%3B Fungi - 180%3B Plants - 327%3B Viruses - 0%3B Other Eukaryotes - 59 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:23091477, PMID:22504182, locus:504956196; locus_type=protein_coding
AT1G20930.1	chr1:007292752	0.0	C/7292752-7292847,7292942-7293080,7293172-7293241,7293329-7293422,7293555-7293666,7293759-7293820,7293909-7294050,7294432-7294664	AT1G20930.1 CDS AT1G20930 ID=AT1G20930.1; Parent=AT1G20930; Name=AT1G20930.1; Note=cyclin-dependent kinase B2%3B2; curator_summary=Cyclin-dependent kinase%2C expressed in flowers and suspension cell culture%2C expression peaks during M phase in synchronized cultures. Required for proper organization of the shoot apical meristem and for hormone signaling. Expressed in the shoot apical meristem. Involved in regulation of the G2/M transition of the mitotic cell cycle.; conf_class=2; symbol=CDKB2%3B2; full_name=cyclin-dependent kinase B2%3B2; computational_description=cyclin-dependent kinase B2%3B2 (CDKB2%3B2)%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: cyclin-dependent kinase B2%3B1 (TAIR:AT1G76540.1)%3B Has 109034 Blast hits to 107606 proteins in 3051 species: Archae - 93%3B Bacteria - 11427%3B Metazoa - 41458%3B Fungi - 12141%3B Plants - 24398%3B Viruses - 437%3B Other Eukaryotes - 19080 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11432958, PMID:12000456, PMID:11971144, PMID:12169696, PMID:12383089, PMID:12913170, PMID:12969430, PMID:14535885, PMID:15908605, PMID:16489130, PMID:16517759, PMID:17360592, PMID:17329565, PMID:18775970, PMID:18923020, PMID:19666737, PMID:20706207, PMID:21477822, locus:2037410; locus_type=protein_coding
AT1TE23550	chr1:007294987	0.0	W/7294987-7295099	AT1TE23550 transposable_element AT1TE23550 ID=AT1TE23550; Name=AT1TE23550; Alias=ATCOPIA37
AT1G20940.1	chr1:007295274	0.0	C/7295274-7296518	AT1G20940.1 CDS AT1G20940 ID=AT1G20940.1; Parent=AT1G20940; Name=AT1G20940.1; Note=F-box family protein; conf_class=9; computational_description=F-box family protein%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%2C F-box associated interaction domain (InterPro:IPR017451)%3B BEST Arabidopsis thaliana protein match is: SWI-SNF-related chromatin binding protein (TAIR:AT1G20240.1)%3B Has 79 Blast hits to 74 proteins in 8 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 79%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*; Dbxref=PMID:20736450, locus:2037395; locus_type=protein_coding
AT1TE23555	chr1:007296463	0.0	W/7296463-7296507	AT1TE23555 transposable_element AT1TE23555 ID=AT1TE23555; Name=AT1TE23555; Alias=ATREP9
AT1TE23560	chr1:007296508	0.0	C/7296508-7297177	AT1TE23560 transposable_element AT1TE23560 ID=AT1TE23560; Name=AT1TE23560; Alias=HELITRONY3
AT1G20950.1	chr1:007297467	0.0	C/7297467-7297580,7297685-7297850,7297936-7298045,7298144-7298260,7298349-7298453,7298575-7298631,7298724-7298768,7298860-7298970,7299059-7299132,7299226-7299319,7299415-7299495,7299684-7299737,7299880-7299963,7300045-7300112,7300199-7300312,7300407-7300481,7300575-7300687,7300788-7300960,7301247-7301336	AT1G20950.1 CDS AT1G20950 ID=AT1G20950.1; Parent=AT1G20950; Name=AT1G20950.1; Note=Phosphofructokinase family protein; conf_class=2; computational_description=Phosphofructokinase family protein%3B FUNCTIONS IN: diphosphate-fructose-6-phosphate 1-phosphotransferase activity%3B INVOLVED IN: response to fructose stimulus%2C response to sucrose stimulus%2C photosynthesis%2C response to glucose stimulus%3B LOCATED IN: pyrophosphate-dependent phosphofructokinase complex%2C alpha-subunit complex%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Pyrophosphate-dependent phosphofructokinase PfpB (InterPro:IPR011183)%2C Phosphofructokinase (InterPro:IPR000023)%3B BEST Arabidopsis thaliana protein match is: Phosphofructokinase family protein (TAIR:AT1G76550.1)%3B Has 4397 Blast hits to 4316 proteins in 1453 species: Archae - 20%3B Bacteria - 3299%3B Metazoa - 3%3B Fungi - 0%3B Plants - 433%3B Viruses - 0%3B Other Eukaryotes - 642 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16916443, PMID:17205343, PMID:18650403, PMID:19533038, locus:2037385; locus_type=protein_coding
AT1G20960.1	chr1:007302591	0.0	C/7302591-7305776,7305879-7306268,7306975-7309914	AT1G20960.1 CDS AT1G20960 ID=AT1G20960.1; Parent=AT1G20960; Name=AT1G20960.1; Note=U5 small nuclear ribonucleoprotein helicase; conf_class=2; symbol=emb1507; full_name=embryo defective 1507; computational_description=embryo defective 1507 (emb1507)%3B FUNCTIONS IN: in 6 functions%3B INVOLVED IN: embryo development ending in seed dormancy%3B LOCATED IN: nucleolus%2C membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (InterPro:IPR011545)%2C Sec63 domain (InterPro:IPR004179)%2C Sec63 domain%2C subgroup (InterPro:IPR018127)%2C DEAD-like helicase%2C N-terminal (InterPro:IPR014001)%2C DNA/RNA helicase%2C C-terminal (InterPro:IPR001650)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain (InterPro:IPR014021)%3B BEST Arabidopsis thaliana protein match is: U5 small nuclear ribonucleoprotein helicase (TAIR:AT2G42270.1)%3B Has 19827 Blast hits to 11921 proteins in 1742 species: Archae - 1778%3B Bacteria - 7152%3B Metazoa - 2915%3B Fungi - 2450%3B Plants - 1068%3B Viruses - 118%3B Other Eukaryotes - 4346 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16621846, PMID:18775970, PMID:23877244, locus:2037375; locus_type=protein_coding
AT1G20960.2	chr1:007302591	0.0	C/7302591-7305776,7305879-7306268,7306975-7309914	AT1G20960.2 CDS AT1G20960 ID=AT1G20960.2; Parent=AT1G20960; Name=AT1G20960.2; Note=U5 small nuclear ribonucleoprotein helicase; conf_class=2; symbol=emb1507; full_name=embryo defective 1507; computational_description=embryo defective 1507 (emb1507)%3B FUNCTIONS IN: in 6 functions%3B INVOLVED IN: embryo development ending in seed dormancy%3B LOCATED IN: nucleolus%2C membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (InterPro:IPR011545)%2C Sec63 domain (InterPro:IPR004179)%2C Sec63 domain%2C subgroup (InterPro:IPR018127)%2C DEAD-like helicase%2C N-terminal (InterPro:IPR014001)%2C DNA/RNA helicase%2C C-terminal (InterPro:IPR001650)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain (InterPro:IPR014021)%3B BEST Arabidopsis thaliana protein match is: U5 small nuclear ribonucleoprotein helicase (TAIR:AT2G42270.1)%3B Has 19827 Blast hits to 11921 proteins in 1742 species: Archae - 1778%3B Bacteria - 7152%3B Metazoa - 2915%3B Fungi - 2450%3B Plants - 1068%3B Viruses - 118%3B Other Eukaryotes - 4346 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16621846, PMID:18775970, PMID:23877244, locus:2037375; locus_type=protein_coding
AT1TE23620	chr1:007313962	0.0	C/7313962-7314091	AT1TE23620 transposable_element AT1TE23620 ID=AT1TE23620; Name=AT1TE23620; Alias=ATDNAI27T9C
AT1G20970.1	chr1:007314338	0.0	W/7314338-7316579,7316676-7316914,7317001-7317159,7317262-7317441,7317660-7317854,7317952-7318050,7318129-7318749,7318887-7319246	AT1G20970.1 CDS AT1G20970 ID=AT1G20970.1; Parent=AT1G20970; Name=AT1G20970.1; Note=calponin-like domain protein; conf_class=2; computational_description=FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%2C vacuole%3B EXPRESSED IN: guard cell%2C cultured cell%3B BEST Arabidopsis thaliana protein match is: proton pump interactor 1 (TAIR:AT4G27500.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18831797, PMID:21284606, locus:2037365; locus_type=protein_coding
AT1TE23650	chr1:007323476	0.0	W/7323476-7323623	AT1TE23650 transposable_element AT1TE23650 ID=AT1TE23650; Name=AT1TE23650; Alias=ATREP3
AT1TE23655	chr1:007323624	0.0	C/7323624-7324366	AT1TE23655 transposable_element AT1TE23655 ID=AT1TE23655; Name=AT1TE23655; Alias=HELITRONY3
AT1G20980.1	chr1:007325042	0.0	W/7325042-7325538,7325626-7325831,7325929-7326731,7326823-7326897,7326989-7327096,7327180-7327297,7327391-7327526,7327609-7327753,7327832-7328431,7328514-7328933	AT1G20980.1 CDS AT1G20980 ID=AT1G20980.1; Parent=AT1G20980; Name=AT1G20980.1; Note=squamosa promoter binding protein-like 14; curator_summary=Encodes a nuclear plant-specific protein with features characteristic of a transcriptional regulator%2C including a nuclear localization signal sequence%2C a plant-specific DNA binding domain (the SBP box)%2C and a protein interaction motif (ankyrin repeats). It unctions as a transcriptional regulator that plays a role not only in sensitivity to FB1%2C but also in the development of normal plant architecture.; conf_class=2; symbol=SPL14; Alias=ATSPL14, SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 14, FBR6, SPL1R2; full_name=squamosa promoter binding protein-like 14; computational_description=squamosa promoter binding protein-like 14 (SPL14)%3B FUNCTIONS IN: DNA binding%2C transcription activator activity%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: defense response to bacterium%2C regulation of transcription%3B LOCATED IN: nucleus%2C plasma membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Transcription factor%2C SBP-box (InterPro:IPR004333)%2C Ankyrin repeat-containing domain (InterPro:IPR020683)%2C Ankyrin repeat (InterPro:IPR002110)%3B BEST Arabidopsis thaliana protein match is: Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (TAIR:AT1G76580.1)%3B Has 1851 Blast hits to 1143 proteins in 117 species: Archae - 0%3B Bacteria - 38%3B Metazoa - 215%3B Fungi - 101%3B Plants - 958%3B Viruses - 0%3B Other Eukaryotes - 539 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11118137, PMID:15703061, PMID:17028151, PMID:18302343, PMID:18495384, PMID:24508602, locus:2037355; locus_type=protein_coding
AT1G20990.1	chr1:007330524	0.0	C/7330524-7331068,7331532-7331946	AT1G20990.1 CDS AT1G20990 ID=AT1G20990.1; Parent=AT1G20990; Name=AT1G20990.1; Note=Cysteine/Histidine-rich C1 domain family protein; conf_class=4; computational_description=Cysteine/Histidine-rich C1 domain family protein%3B LOCATED IN: chloroplast%3B CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146)%2C C1-like (InterPro:IPR011424)%3B BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT2G16050.1)%3B Has 1603 Blast hits to 716 proteins in 35 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 20%3B Fungi - 0%3B Plants - 1573%3B Viruses - 0%3B Other Eukaryotes - 8 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:14576160, PMID:20032078, PMID:20736450, locus:2037422; locus_type=protein_coding
AT1G05613.1	chr1:007336674	0.0	C/7336674-7336952	AT1G05613.1 lnc_RNA AT1G05613 ID=AT1G05613.1; Parent=AT1G05613; Name=AT1G05613.1; locus_type=long_noncoding_rna
AT1G21000.1	chr1:007337919	0.0	W/7337919-7337921,7338007-7338210,7338298-7338513,7338771-7339088	AT1G21000.1 CDS AT1G21000 ID=AT1G21000.1; Parent=AT1G21000; Name=AT1G21000.1; Note=PLATZ transcription factor family protein; conf_class=2; computational_description=PLATZ transcription factor family protein%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF597 (InterPro:IPR006734)%3B BEST Arabidopsis thaliana protein match is: PLATZ transcription factor family protein (TAIR:AT1G76590.1)%3B Has 403 Blast hits to 403 proteins in 26 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 403%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12169696, PMID:15489280, PMID:16055634, PMID:18552355, PMID:18650403, locus:2037405; locus_type=protein_coding
AT1G21000.2	chr1:007338013	0.0	W/7338013-7338210,7338298-7338513,7338771-7339088	AT1G21000.2 CDS AT1G21000 ID=AT1G21000.2; Parent=AT1G21000; Name=AT1G21000.2; Note=PLATZ transcription factor family protein; conf_class=6; computational_description=PLATZ transcription factor family protein%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF597 (InterPro:IPR006734)%3B BEST Arabidopsis thaliana protein match is: PLATZ transcription factor family protein (TAIR:AT1G76590.1)%3B Has 403 Blast hits to 403 proteins in 26 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 403%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:12169696, PMID:15489280, PMID:16055634, PMID:18552355, PMID:18650403, locus:2037405; locus_type=protein_coding
AT1G05617.1	chr1:007344747	0.0	W/7344747-7345128	AT1G05617.1 lnc_RNA AT1G05617 ID=AT1G05617.1; Parent=AT1G05617; Name=AT1G05617.1; locus_type=long_noncoding_rna
AT1G21010.1	chr1:007346239	0.0	W/7346239-7346871	AT1G21010.1 CDS AT1G21010 ID=AT1G21010.1; Parent=AT1G21010; Name=AT1G21010.1; Note=poly polymerase; conf_class=1; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: N-terminal protein myristoylation%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76600.1)%3B Has 206 Blast hits to 206 proteins in 13 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 206%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12912986, PMID:18650403, PMID:18805951, PMID:18775970, locus:2037400; locus_type=protein_coding
AT1TE23740	chr1:007352930	0.0	C/7352930-7365197	AT1TE23740 transposable_element AT1TE23740 ID=AT1TE23740; Name=AT1TE23740; Alias=VANDAL14
AT1G21020.1	chr1:007353540	0.0	W/7353540-7357981	AT1G21020.1 CDS AT1G21020 ID=AT1G21020.1; Parent=AT1G21020; Name=AT1G21020.1; index=1; computational_description=similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G08740.1)%3B similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G26530.1)%3B similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G44890.1)%3B similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); Dbxref=PMID:18775970, locus:2199602; Note=transposable_element_gene; locus_type=transposable_element_gene
AT1G21040.1	chr1:007359983	0.0	C/7359983-7363334	AT1G21040.1 CDS AT1G21040 ID=AT1G21040.1; Parent=AT1G21040; Name=AT1G21040.1; index=1; computational_description=Mutator-like transposase family%2C has a 3.3e-87 P-value blast match to Q9SLM0 /314-478 Pfam PF03108 MuDR family transposase (MuDr-element domain); Dbxref=locus:2025550; Note=transposable_element_gene; locus_type=transposable_element_gene
AT1G21050.2	chr1:007366751	0.0	W/7366751-7367596	AT1G21050.2 CDS AT1G21050 ID=AT1G21050.2; Parent=AT1G21050; Name=AT1G21050.2; Note=MIZU-KUSSEI-like protein (Protein of unknown function%2C DUF617); computational_description=Protein of unknown function%2C DUF617%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF617%2C plant (InterPro:IPR006460)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function%2C DUF617 (TAIR:AT1G76610.1)%3B Has 257 Blast hits to 256 proteins in 14 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 257%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=locus:2199577; locus_type=protein_coding
AT1G21050.1	chr1:007366859	0.0	W/7366859-7367596	AT1G21050.1 CDS AT1G21050 ID=AT1G21050.1; Parent=AT1G21050; Name=AT1G21050.1; Note=MIZU-KUSSEI-like protein (Protein of unknown function%2C DUF617); conf_class=1; computational_description=Protein of unknown function%2C DUF617%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF617%2C plant (InterPro:IPR006460)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function%2C DUF617 (TAIR:AT1G76610.1)%3B Has 257 Blast hits to 256 proteins in 14 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 257%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:2199577; locus_type=protein_coding
AT1G05623.1	chr1:007370611	0.0	W/7370611-7370903	AT1G05623.1 lnc_RNA AT1G05623 ID=AT1G05623.1; Parent=AT1G05623; Name=AT1G05623.1; locus_type=long_noncoding_rna
AT1G21060.1	chr1:007371763	0.0	W/7371763-7371857,7371947-7372013,7372098-7372160,7372248-7372532,7372610-7372959,7373055-7373154,7373238-7373291,7373371-7373457,7373543-7373671,7373762-7374085	AT1G21060.1 CDS AT1G21060 ID=AT1G21060.1; Parent=AT1G21060; Name=AT1G21060.1; Note=Serine/Threonine-kinase%2C putative (Protein of unknown function%2C DUF547); conf_class=2; computational_description=Protein of unknown function%2C DUF547%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 16 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function%2C DUF547 (TAIR:AT1G76620.1)%3B Has 536 Blast hits to 524 proteins in 67 species: Archae - 0%3B Bacteria - 34%3B Metazoa - 26%3B Fungi - 3%3B Plants - 441%3B Viruses - 0%3B Other Eukaryotes - 32 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:20736450, locus:2199567; locus_type=protein_coding
AT1G21060.2	chr1:007371763	0.0	W/7371763-7371857,7371947-7372013,7372134-7372160,7372248-7372532,7372610-7372959,7373055-7373154,7373238-7373291,7373371-7373457,7373543-7373671,7373762-7374085	AT1G21060.2 CDS AT1G21060 ID=AT1G21060.2; Parent=AT1G21060; Name=AT1G21060.2; Note=Serine/Threonine-kinase%2C putative (Protein of unknown function%2C DUF547); conf_class=3; computational_description=Protein of unknown function%2C DUF547%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 16 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function%2C DUF547 (TAIR:AT1G76620.1)%3B Has 536 Blast hits to 524 proteins in 67 species: Archae - 0%3B Bacteria - 34%3B Metazoa - 26%3B Fungi - 3%3B Plants - 441%3B Viruses - 0%3B Other Eukaryotes - 32 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:20736450, locus:2199567; locus_type=protein_coding
AT1G21065.1	chr1:007374210	0.0	W/7374210-7374503,7374623-7374683,7374794-7374888,7374968-7375001,7375166-7375220,7375320-7375362,7375573-7375644	AT1G21065.1 CDS AT1G21065 ID=AT1G21065.1; Parent=AT1G21065; Name=AT1G21065.1; Note=secondary thiamine-phosphate synthase enzyme; conf_class=2; computational_description=unknown protein%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0047 (InterPro:IPR001602)%3B Has 3800 Blast hits to 3784 proteins in 1137 species: Archae - 215%3B Bacteria - 2154%3B Metazoa - 42%3B Fungi - 99%3B Plants - 99%3B Viruses - 0%3B Other Eukaryotes - 1191 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:22487254, locus:505006137; locus_type=protein_coding
AT1G21070.1	chr1:007376148	0.0	C/7376148-7376507,7376589-7376750,7377085-7377285,7377381-7377565,7377672-7377810	AT1G21070.1 CDS AT1G21070 ID=AT1G21070.1; Parent=AT1G21070; Name=AT1G21070.1; Note=Nucleotide-sugar transporter family protein; conf_class=2; Alias=URGT2, UDP-Rha/UDP-Gal transporter 2; computational_description=Nucleotide-sugar transporter family protein%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853)%3B BEST Arabidopsis thaliana protein match is: Nucleotide-sugar transporter family protein (TAIR:AT1G76670.1)%3B Has 2012 Blast hits to 2008 proteins in 220 species: Archae - 0%3B Bacteria - 26%3B Metazoa - 397%3B Fungi - 317%3B Plants - 1060%3B Viruses - 0%3B Other Eukaryotes - 212 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12644669, PMID:15456736, PMID:16367961, PMID:16607029, PMID:25053812, PMID:25658798, locus:2199557; locus_type=protein_coding
AT1G21080.1	chr1:007378822	0.0	C/7378822-7378926,7379332-7379469,7379582-7379662,7379753-7379931,7380133-7380291,7380410-7380536,7380802-7380958,7381099-7381181,7381805-7381864,7382189-7382275	AT1G21080.1 CDS AT1G21080 ID=AT1G21080.1; Parent=AT1G21080; Name=AT1G21080.1; Note=DNAJ heat shock N-terminal domain-containing protein; conf_class=2; computational_description=DNAJ heat shock N-terminal domain-containing protein%3B FUNCTIONS IN: unfolded protein binding%2C heat shock protein binding%3B INVOLVED IN: protein folding%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Molecular chaperone%2C heat shock protein%2C Hsp40%2C DnaJ (InterPro:IPR015609)%2C Heat shock protein DnaJ%2C N-terminal (InterPro:IPR001623)%2C Heat shock protein DnaJ (InterPro:IPR003095)%2C Heat shock protein DnaJ%2C conserved site (InterPro:IPR018253)%3B BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT1G76700.1)%3B Has 22938 Blast hits to 22804 proteins in 3197 species: Archae - 169%3B Bacteria - 9211%3B Metazoa - 3964%3B Fungi - 2251%3B Plants - 2330%3B Viruses - 17%3B Other Eukaryotes - 4996 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, PMID:20736450, locus:2199622; locus_type=protein_coding
AT1G21080.2	chr1:007378822	0.0	C/7378822-7378926,7379332-7379469,7379582-7379662,7379753-7379931,7380133-7380291,7380410-7380536,7380802-7380927	AT1G21080.2 CDS AT1G21080 ID=AT1G21080.2; Parent=AT1G21080; Name=AT1G21080.2; Note=DNAJ heat shock N-terminal domain-containing protein; conf_class=1; computational_description=DNAJ heat shock N-terminal domain-containing protein%3B FUNCTIONS IN: unfolded protein binding%2C heat shock protein binding%3B INVOLVED IN: protein folding%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Molecular chaperone%2C heat shock protein%2C Hsp40%2C DnaJ (InterPro:IPR015609)%2C Heat shock protein DnaJ%2C N-terminal (InterPro:IPR001623)%2C Heat shock protein DnaJ (InterPro:IPR003095)%2C Heat shock protein DnaJ%2C conserved site (InterPro:IPR018253)%3B BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT1G76700.1)%3B Has 22938 Blast hits to 22804 proteins in 3197 species: Archae - 169%3B Bacteria - 9211%3B Metazoa - 3964%3B Fungi - 2251%3B Plants - 2330%3B Viruses - 17%3B Other Eukaryotes - 4996 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:18775970, PMID:20736450, locus:2199622; locus_type=protein_coding
AT1G21080.3	chr1:007378822	0.0	C/7378822-7378926,7379024-7379050,7379332-7379469,7379582-7379662,7379753-7379931,7380133-7380291,7380410-7380536,7380802-7380958,7381099-7381181,7381805-7381864,7382189-7382275	AT1G21080.3 CDS AT1G21080 ID=AT1G21080.3; Parent=AT1G21080; Name=AT1G21080.3; Note=DNAJ heat shock N-terminal domain-containing protein; conf_class=6; computational_description=DNAJ heat shock N-terminal domain-containing protein%3B FUNCTIONS IN: unfolded protein binding%2C heat shock protein binding%3B INVOLVED IN: protein folding%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Molecular chaperone%2C heat shock protein%2C Hsp40%2C DnaJ (InterPro:IPR015609)%2C Heat shock protein DnaJ%2C N-terminal (InterPro:IPR001623)%2C Heat shock protein DnaJ (InterPro:IPR003095)%2C Heat shock protein DnaJ%2C conserved site (InterPro:IPR018253)%3B BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT1G76700.1)%3B Has 22938 Blast hits to 22804 proteins in 3197 species: Archae - 169%3B Bacteria - 9211%3B Metazoa - 3964%3B Fungi - 2251%3B Plants - 2330%3B Viruses - 17%3B Other Eukaryotes - 4996 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:18775970, PMID:20736450, locus:2199622; locus_type=protein_coding
AT1G21090.1	chr1:007384854	0.0	W/7384854-7385007,7385099-7385214,7385638-7386024,7386128-7386199	AT1G21090.1 CDS AT1G21090 ID=AT1G21090.1; Parent=AT1G21090; Name=AT1G21090.1; Note=Cupredoxin superfamily protein; conf_class=1; computational_description=Cupredoxin superfamily protein%3B CONTAINS InterPro DOMAIN/s: Cupredoxin (InterPro:IPR008972)%3B Has 232 Blast hits to 228 proteins in 41 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 16%3B Fungi - 9%3B Plants - 195%3B Viruses - 0%3B Other Eukaryotes - 8 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12068095, PMID:12805588, PMID:18315867, locus:2199617; locus_type=protein_coding
AT1G21090.2	chr1:007384854	0.0	W/7384854-7385007,7385099-7385214,7385638-7386045	AT1G21090.2 CDS AT1G21090 ID=AT1G21090.2; Parent=AT1G21090; Name=AT1G21090.2; Note=Cupredoxin superfamily protein; computational_description=Cupredoxin superfamily protein%3B CONTAINS InterPro DOMAIN/s: Cupredoxin (InterPro:IPR008972)%3B Has 232 Blast hits to 228 proteins in 41 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 16%3B Fungi - 9%3B Plants - 195%3B Viruses - 0%3B Other Eukaryotes - 8 (source: NCBI BLink).; Dbxref=PMID:12068095, PMID:12805588, PMID:18315867, locus:2199617; locus_type=protein_coding
AT1G21100.1	chr1:007386991	0.0	C/7386991-7387290,7387407-7387779,7387870-7388318	AT1G21100.1 CDS AT1G21100 ID=AT1G21100.1; Parent=AT1G21100; Name=AT1G21100.1; Note=O-methyltransferase family protein; conf_class=2; symbol=IGMT1; full_name=indole glucosinolate O-methyltransferase 1; computational_description=O-methyltransferase family protein%3B FUNCTIONS IN: methyltransferase activity%2C O-methyltransferase activity%2C protein dimerization activity%3B LOCATED IN: cytosol%3B EXPRESSED IN: stem%2C cotyledon%2C hypocotyl%2C root%2C leaf%3B EXPRESSED DURING: LP.04 four leaves visible%3B CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991)%2C Plant methyltransferase dimerisation (InterPro:IPR012967)%2C O-methyltransferase%2C family 2 (InterPro:IPR001077)%2C O-methyltransferase%2C COMT%2C eukaryota (InterPro:IPR016461)%3B BEST Arabidopsis thaliana protein match is: O-methyltransferase family protein (TAIR:AT1G21130.1)%3B Has 3375 Blast hits to 3370 proteins in 588 species: Archae - 3%3B Bacteria - 947%3B Metazoa - 107%3B Fungi - 659%3B Plants - 1542%3B Viruses - 0%3B Other Eukaryotes - 117 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12368499, PMID:9484457, PMID:14568076, PMID:14551330, PMID:14612585, PMID:15235117, PMID:15713015, PMID:15923329, PMID:15878986, PMID:16698904, PMID:16766693, PMID:16913859, PMID:17061125, PMID:17257166, PMID:17497164, PMID:20736450, PMID:21317374, PMID:23073694, locus:2199607; locus_type=protein_coding
AT1G21110.1	chr1:007390110	0.0	C/7390110-7390409,7390503-7390875,7390971-7391419	AT1G21110.1 CDS AT1G21110 ID=AT1G21110.1; Parent=AT1G21110; Name=AT1G21110.1; Note=O-methyltransferase family protein; conf_class=2; symbol=IGMT3; full_name=indole glucosinolate O-methyltransferase 3; computational_description=O-methyltransferase family protein%3B FUNCTIONS IN: methyltransferase activity%2C O-methyltransferase activity%2C protein dimerization activity%3B LOCATED IN: cytosol%3B CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991)%2C Plant methyltransferase dimerisation (InterPro:IPR012967)%2C O-methyltransferase%2C family 2 (InterPro:IPR001077)%2C O-methyltransferase%2C COMT%2C eukaryota (InterPro:IPR016461)%3B BEST Arabidopsis thaliana protein match is: O-methyltransferase family protein (TAIR:AT1G21120.1)%3B Has 3289 Blast hits to 3284 proteins in 565 species: Archae - 1%3B Bacteria - 890%3B Metazoa - 104%3B Fungi - 640%3B Plants - 1549%3B Viruses - 0%3B Other Eukaryotes - 105 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9484457, PMID:14568076, PMID:14535883, PMID:14612585, PMID:15086809, PMID:15235117, PMID:15713015, PMID:15878986, PMID:16698904, PMID:20736450, locus:2199597; locus_type=protein_coding
AT1TE23830	chr1:007392261	0.0	W/7392261-7392513	AT1TE23830 transposable_element AT1TE23830 ID=AT1TE23830; Name=AT1TE23830; Alias=VANDAL13
AT1TE23835	chr1:007393252	0.0	W/7393252-7393404	AT1TE23835 transposable_element AT1TE23835 ID=AT1TE23835; Name=AT1TE23835; Alias=VANDAL14
AT1TE23840	chr1:007394406	0.0	C/7394406-7394765	AT1TE23840 transposable_element AT1TE23840 ID=AT1TE23840; Name=AT1TE23840; Alias=ATSINE4
AT1G21120.1	chr1:007395331	0.0	C/7395331-7395630,7395724-7396096,7396192-7396640	AT1G21120.1 CDS AT1G21120 ID=AT1G21120.1; Parent=AT1G21120; Name=AT1G21120.1; Note=O-methyltransferase family protein; conf_class=1; symbol=IGMT2; full_name=indole glucosinolate O-methyltransferase 2; computational_description=O-methyltransferase family protein%3B FUNCTIONS IN: methyltransferase activity%2C O-methyltransferase activity%2C protein dimerization activity%3B LOCATED IN: cytosol%3B EXPRESSED IN: 9 plant structures%3B EXPRESSED DURING: LP.04 four leaves visible%2C LP.10 ten leaves visible%2C LP.08 eight leaves visible%3B CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991)%2C Plant methyltransferase dimerisation (InterPro:IPR012967)%2C O-methyltransferase%2C family 2 (InterPro:IPR001077)%2C O-methyltransferase%2C COMT%2C eukaryota (InterPro:IPR016461)%3B BEST Arabidopsis thaliana protein match is: O-methyltransferase family protein (TAIR:AT1G21110.1)%3B Has 3310 Blast hits to 3305 proteins in 577 species: Archae - 1%3B Bacteria - 921%3B Metazoa - 104%3B Fungi - 640%3B Plants - 1542%3B Viruses - 0%3B Other Eukaryotes - 102 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:9484457, PMID:14568076, PMID:14612585, PMID:15235117, PMID:15713015, PMID:15878986, PMID:16500996, PMID:16698904, PMID:16913859, PMID:17257166, PMID:18650403, PMID:21317374, PMID:23073694, locus:2199587; locus_type=protein_coding
AT1G21120.2	chr1:007395331	0.0	C/7395331-7395630,7395724-7396096,7396192-7396784	AT1G21120.2 CDS AT1G21120 ID=AT1G21120.2; Parent=AT1G21120; Name=AT1G21120.2; Note=O-methyltransferase family protein; symbol=IGMT2; full_name=indole glucosinolate O-methyltransferase 2; computational_description=O-methyltransferase family protein%3B FUNCTIONS IN: methyltransferase activity%2C O-methyltransferase activity%2C protein dimerization activity%3B LOCATED IN: cytosol%3B EXPRESSED IN: 9 plant structures%3B EXPRESSED DURING: LP.04 four leaves visible%2C LP.10 ten leaves visible%2C LP.08 eight leaves visible%3B CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991)%2C Plant methyltransferase dimerisation (InterPro:IPR012967)%2C O-methyltransferase%2C family 2 (InterPro:IPR001077)%2C O-methyltransferase%2C COMT%2C eukaryota (InterPro:IPR016461)%3B BEST Arabidopsis thaliana protein match is: O-methyltransferase family protein (TAIR:AT1G21110.1)%3B Has 3310 Blast hits to 3305 proteins in 577 species: Archae - 1%3B Bacteria - 921%3B Metazoa - 104%3B Fungi - 640%3B Plants - 1542%3B Viruses - 0%3B Other Eukaryotes - 102 (source: NCBI BLink).; Dbxref=PMID:9484457, PMID:14568076, PMID:14612585, PMID:15235117, PMID:15713015, PMID:15878986, PMID:16500996, PMID:16698904, PMID:16913859, PMID:17257166, PMID:18650403, PMID:21317374, PMID:23073694, locus:2199587; locus_type=protein_coding
AT1TE23845	chr1:007397253	0.0	C/7397253-7397547	AT1TE23845 transposable_element AT1TE23845 ID=AT1TE23845; Name=AT1TE23845; Alias=ATMUN1
AT1G21130.1	chr1:007399170	0.0	C/7399170-7399469,7399558-7399930,7400022-7400470	AT1G21130.1 CDS AT1G21130 ID=AT1G21130.1; Parent=AT1G21130; Name=AT1G21130.1; Note=O-methyltransferase family protein; conf_class=2; symbol=IGMT4; full_name=indole glucosinolate O-methyltransferase 4; computational_description=O-methyltransferase family protein%3B FUNCTIONS IN: methyltransferase activity%2C protein dimerization activity%2C O-methyltransferase activity%3B LOCATED IN: cytosol%3B EXPRESSED IN: 15 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991)%2C Plant methyltransferase dimerisation (InterPro:IPR012967)%2C O-methyltransferase%2C family 2 (InterPro:IPR001077)%2C O-methyltransferase%2C COMT%2C eukaryota (InterPro:IPR016461)%3B BEST Arabidopsis thaliana protein match is: O-methyltransferase family protein (TAIR:AT1G21100.1)%3B Has 3382 Blast hits to 3377 proteins in 592 species: Archae - 1%3B Bacteria - 963%3B Metazoa - 105%3B Fungi - 662%3B Plants - 1542%3B Viruses - 0%3B Other Eukaryotes - 109 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9484457, PMID:14568076, PMID:14612585, PMID:15235117, PMID:15713015, PMID:15878986, PMID:16005291, PMID:16081527, PMID:16913859, PMID:16998091, PMID:17257166, locus:2199582; locus_type=protein_coding
AT1G21130.2	chr1:007399489	0.0	C/7399489-7399930,7400022-7400470	AT1G21130.2 CDS AT1G21130 ID=AT1G21130.2; Parent=AT1G21130; Name=AT1G21130.2; Note=O-methyltransferase family protein; conf_class=2; symbol=IGMT4; full_name=indole glucosinolate O-methyltransferase 4; computational_description=O-methyltransferase family protein%3B FUNCTIONS IN: methyltransferase activity%2C protein dimerization activity%2C O-methyltransferase activity%3B LOCATED IN: cytosol%3B EXPRESSED IN: 15 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991)%2C Plant methyltransferase dimerisation (InterPro:IPR012967)%2C O-methyltransferase%2C family 2 (InterPro:IPR001077)%2C O-methyltransferase%2C COMT%2C eukaryota (InterPro:IPR016461)%3B BEST Arabidopsis thaliana protein match is: O-methyltransferase family protein (TAIR:AT1G21100.1)%3B Has 3382 Blast hits to 3377 proteins in 592 species: Archae - 1%3B Bacteria - 963%3B Metazoa - 105%3B Fungi - 662%3B Plants - 1542%3B Viruses - 0%3B Other Eukaryotes - 109 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:9484457, PMID:14568076, PMID:14612585, PMID:15235117, PMID:15713015, PMID:15878986, PMID:16005291, PMID:16081527, PMID:16913859, PMID:16998091, PMID:17257166, locus:2199582; locus_type=protein_coding
AT1G05627.1	chr1:007400802	0.0	C/7400802-7400992	AT1G05627.1 miRNA_primary_transcript AT1G05627 ID=AT1G05627.1; Parent=AT1G05627; Alias=MI0020196; Name=ath-MIR5999; symbol=ath-MIR5999; Note=microRNA ath-MIR5999 precursor; locus_type=mirna
ath-miR5999	chr1:007400952	0.0	C/7400952-7400972	ath-miR5999 miRNA ath-miR5999 ID=ath-miR5999; Alias=MIMAT0023525; Name=ath-miR5999; Derives_from=AT1G05627.1; Note=microRNA ath-miR5999; computational_description=mature miRNA accession:MIMAT0023525
AT1G05633.1	chr1:007401345	0.0	W/7401345-7401549	AT1G05633.1 lnc_RNA AT1G05633 ID=AT1G05633.1; Parent=AT1G05633; Name=AT1G05633.1; locus_type=long_noncoding_rna
AT1G21140.1	chr1:007404464	0.0	W/7404464-7405066	AT1G21140.1 CDS AT1G21140 ID=AT1G21140.1; Parent=AT1G21140; Name=AT1G21140.1; Note=Vacuolar iron transporter (VIT) family protein; curator_summary=The gene encodes nodulin-like1 whose transcript abundance was repressed under conditions of Fe-deficient growth.; conf_class=1; Alias=AtVTL1, VTL1, Vacuolar Iron Transporter-Like 1; computational_description=Vacuolar iron transporter (VIT) family protein%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF125%2C transmembrane (InterPro:IPR008217)%3B BEST Arabidopsis thaliana protein match is: Vacuolar iron transporter (VIT) family protein (TAIR:AT3G43660.1)%3B Has 1867 Blast hits to 1856 proteins in 645 species: Archae - 60%3B Bacteria - 1279%3B Metazoa - 0%3B Fungi - 103%3B Plants - 211%3B Viruses - 0%3B Other Eukaryotes - 214 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:17028341, PMID:18650403, PMID:20627899, PMID:21411332, PMID:25360591, locus:2199572; locus_type=protein_coding
AT1G21150.1	chr1:007406406	0.0	C/7406406-7407578	AT1G21150.1 CDS AT1G21150 ID=AT1G21150.1; Parent=AT1G21150; Name=AT1G21150.1; Note=Mitochondrial transcription termination factor family protein; conf_class=1; computational_description=Mitochondrial transcription termination factor family protein%3B CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690)%3B BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT5G07900.1)%3B Has 922 Blast hits to 791 proteins in 36 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 9%3B Fungi - 0%3B Plants - 903%3B Viruses - 0%3B Other Eukaryotes - 10 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:23087700, locus:2199612; locus_type=protein_coding
AT1G21150.2	chr1:007406406	0.0	C/7406406-7407770	AT1G21150.2 CDS AT1G21150 ID=AT1G21150.2; Parent=AT1G21150; Name=AT1G21150.2; Note=Mitochondrial transcription termination factor family protein; computational_description=Mitochondrial transcription termination factor family protein%3B CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690)%3B BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT5G07900.1)%3B Has 922 Blast hits to 791 proteins in 36 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 9%3B Fungi - 0%3B Plants - 903%3B Viruses - 0%3B Other Eukaryotes - 10 (source: NCBI BLink).; Dbxref=PMID:23087700, locus:2199612; locus_type=protein_coding
AT1G21150.3	chr1:007406406	0.0	C/7406406-7407403,7407704-7407770	AT1G21150.3 CDS AT1G21150 ID=AT1G21150.3; Parent=AT1G21150; Name=AT1G21150.3; Note=Mitochondrial transcription termination factor family protein; computational_description=Mitochondrial transcription termination factor family protein%3B CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690)%3B BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT5G07900.1)%3B Has 922 Blast hits to 791 proteins in 36 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 9%3B Fungi - 0%3B Plants - 903%3B Viruses - 0%3B Other Eukaryotes - 10 (source: NCBI BLink).; Dbxref=PMID:23087700, locus:2199612; locus_type=protein_coding
AT1G21160.1	chr1:007408121	0.0	C/7408121-7408186,7408292-7408408,7408489-7408626,7408711-7409268,7409380-7409439,7409564-7409629,7409738-7409848,7409929-7410019,7410116-7410216,7410311-7410418,7410501-7411048,7411141-7412455	AT1G21160.1 CDS AT1G21160 ID=AT1G21160.1; Parent=AT1G21160; Name=AT1G21160.1; Note=eukaryotic translation initiation factor 2 (eIF-2) family protein; conf_class=2; computational_description=eukaryotic translation initiation factor 2 (eIF-2) family protein%3B FUNCTIONS IN: GTP binding%2C GTPase activity%2C translation initiation factor activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225)%2C Translation elongation factor EFTu/EF1A%2C domain 2 (InterPro:IPR004161)%2C Translation initiation factor 2 related (InterPro:IPR015760)%2C Protein synthesis factor%2C GTP-binding (InterPro:IPR000795)%2C Translation elongation/initiation factor/Ribosomal%2C beta-barrel (InterPro:IPR009000)%3B BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 2 (eIF-2) family protein (TAIR:AT1G76810.1)%3B Has 90488 Blast hits to 74140 proteins in 3758 species: Archae - 1026%3B Bacteria - 37280%3B Metazoa - 18910%3B Fungi - 5896%3B Plants - 2823%3B Viruses - 221%3B Other Eukaryotes - 24332 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2199562; locus_type=protein_coding
AT1G21170.1	chr1:007413050	0.0	W/7413050-7413469,7413798-7413955,7414070-7414155,7414271-7414465,7414549-7414676,7414762-7414920,7415054-7415158,7415419-7415493,7415735-7415872,7415969-7416154,7416243-7416371,7416507-7416633,7416714-7416924,7417310-7417425,7417543-7417771,7418030-7418123,7418266-7418343,7418456-7418512,7418624-7418773,7418870-7419085,7419196-7419411	AT1G21170.1 CDS AT1G21170 ID=AT1G21170.1; Parent=AT1G21170; Name=AT1G21170.1; Note=Exocyst complex component SEC5; conf_class=2; symbol=SEC5B; computational_description=SEC5B%3B BEST Arabidopsis thaliana protein match is: exocyst complex component sec5 (TAIR:AT1G76850.1)%3B Has 822 Blast hits to 808 proteins in 207 species: Archae - 0%3B Bacteria - 24%3B Metazoa - 388%3B Fungi - 169%3B Plants - 124%3B Viruses - 8%3B Other Eukaryotes - 109 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18433157, PMID:18492870, PMID:20008096, PMID:20736450, locus:2199552; locus_type=protein_coding
AT1G21170.2	chr1:007413050	0.0	W/7413050-7413469,7413798-7413955,7414070-7414155,7414271-7414465,7414549-7414676,7414762-7414920,7415054-7415158,7415419-7415493,7415735-7415924,7415994-7416154,7416243-7416371,7416507-7416633,7416714-7416924,7417310-7417425,7417543-7417771,7418030-7418123,7418266-7418343,7418456-7418512,7418624-7418773,7418870-7419085,7419196-7419411	AT1G21170.2 CDS AT1G21170 ID=AT1G21170.2; Parent=AT1G21170; Name=AT1G21170.2; Note=Exocyst complex component SEC5; symbol=SEC5B; computational_description=SEC5B%3B BEST Arabidopsis thaliana protein match is: exocyst complex component sec5 (TAIR:AT1G76850.1)%3B Has 822 Blast hits to 808 proteins in 207 species: Archae - 0%3B Bacteria - 24%3B Metazoa - 388%3B Fungi - 169%3B Plants - 124%3B Viruses - 8%3B Other Eukaryotes - 109 (source: NCBI BLink).; Dbxref=PMID:18433157, PMID:18492870, PMID:20008096, PMID:20736450, locus:2199552; locus_type=protein_coding
AT1G21190.1	chr1:007419989	0.0	C/7419989-7420069,7420392-7420487,7420740-7420856	AT1G21190.1 CDS AT1G21190 ID=AT1G21190.1; Parent=AT1G21190; Name=AT1G21190.1; Note=Small nuclear ribonucleoprotein family protein; conf_class=2; symbol=LSM3A; full_name=SM-like 3A; computational_description=Small nuclear ribonucleoprotein family protein%3B CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163)%2C Like-Sm ribonucleoprotein (LSM) domain%2C eukaryotic/archaea-type (InterPro:IPR006649)%2C Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920)%3B BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT1G76860.1)%3B Has 1267 Blast hits to 1267 proteins in 306 species: Archae - 319%3B Bacteria - 0%3B Metazoa - 370%3B Fungi - 215%3B Plants - 174%3B Viruses - 0%3B Other Eukaryotes - 189 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:21142222, PMID:23221597, PMID:23620288, locus:2014922; locus_type=protein_coding
AT1G21200.1	chr1:007421483	0.0	W/7421483-7422814	AT1G21200.1 CDS AT1G21200 ID=AT1G21200.1; Parent=AT1G21200; Name=AT1G21200.1; Note=sequence-specific DNA binding transcription factor; conf_class=1; computational_description=sequence-specific DNA binding transcription factors%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76870.1)%3B Has 317 Blast hits to 297 proteins in 56 species: Archae - 2%3B Bacteria - 28%3B Metazoa - 67%3B Fungi - 2%3B Plants - 135%3B Viruses - 9%3B Other Eukaryotes - 74 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11118137, PMID:15546358, PMID:18650403, locus:2014942; locus_type=protein_coding
AT1G21200.2	chr1:007421483	0.0	W/7421483-7422814	AT1G21200.2 CDS AT1G21200 ID=AT1G21200.2; Parent=AT1G21200; Name=AT1G21200.2; Note=sequence-specific DNA binding transcription factor; Dbxref=PMID:11118137, PMID:15546358, PMID:18650403, locus:2014942; computational_description=sequence-specific DNA binding transcription factors%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76870.1)%3B Has 317 Blast hits to 297 proteins in 56 species: Archae - 2%3B Bacteria - 28%3B Metazoa - 67%3B Fungi - 2%3B Plants - 135%3B Viruses - 9%3B Other Eukaryotes - 74 (source: NCBI BLink).; locus_type=protein_coding
AT1G21202.1	chr1:007423518	0.0	W/7423518-7423611	AT1G21202.1 miRNA_primary_transcript AT1G21202 ID=AT1G21202.1; Parent=AT1G21202; Alias=p_MI0005111; Name=ath-MIR781a; symbol=MIR781A; curator_summary=Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UUAGAGUUUUCUGGAUACUUA; Note=microRNA ath-MIR781a precursor; full_name=microRNA781A; Dbxref=locus:4515102558, locus:4515102558; locus_type=mirna
AT1G05637.1	chr1:007423521	0.0	C/7423521-7423607	AT1G05637.1 miRNA_primary_transcript AT1G05637 ID=AT1G05637.1; Parent=AT1G05637; Alias=MI0019231; Name=ath-MIR781b; symbol=ath-MIR781b; Note=microRNA ath-MIR781b precursor; locus_type=mirna
ath-miR781a	chr1:007423523	0.0	W/7423523-7423543	ath-miR781a miRNA ath-miR781a ID=ath-miR781a; Alias=MIMAT0003940; Name=ath-miR781a; Derives_from=AT1G21202.1; Note=microRNA ath-miR781a; computational_description=mature miRNA accession:MIMAT0003940
ath-miR781b	chr1:007423585	0.0	C/7423585-7423605	ath-miR781b miRNA ath-miR781b ID=ath-miR781b; Alias=MIMAT0022420; Name=ath-miR781b; Derives_from=AT1G05637.1; Note=microRNA ath-miR781b; computational_description=mature miRNA accession:MIMAT0022420
AT1G21210.1	chr1:007424653	0.0	W/7424653-7425487,7425585-7425770,7425846-7427041	AT1G21210.1 CDS AT1G21210 ID=AT1G21210.1; Parent=AT1G21210; Name=AT1G21210.1; Note=wall associated kinase 4; curator_summary=cell wall-associated ser/thr kinase involved in cell elongation and lateral root development; conf_class=6; symbol=WAK4; full_name=wall associated kinase 4; computational_description=wall associated kinase 4 (WAK4)%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C ATP binding%2C calcium ion binding%3B INVOLVED IN: protein amino acid phosphorylation%2C unidimensional cell growth%2C lateral root development%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: root%2C trichome%3B CONTAINS InterPro DOMAIN/s: EGF-like calcium-binding (InterPro:IPR001881)%2C EGF-like%2C type 3 (InterPro:IPR000742)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C EGF-like calcium-binding%2C conserved site (InterPro:IPR018097)%2C EGF-type aspartate/asparagine hydroxylation site (InterPro:IPR000152)%2C EGF calcium-binding (InterPro:IPR013091)%2C EGF-like (InterPro:IPR006210)%3B BEST Arabidopsis thaliana protein match is: wall-associated kinase 2 (TAIR:AT1G21270.1)%3B Has 129683 Blast hits to 121711 proteins in 4745 species: Archae - 127%3B Bacteria - 14044%3B Metazoa - 54379%3B Fungi - 9626%3B Plants - 33474%3B Viruses - 427%3B Other Eukaryotes - 17606 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:10380805, PMID:11402163, PMID:15105442, PMID:15276459, PMID:18650403, locus:2014952; locus_type=protein_coding
AT1G21220.1	chr1:007428112	0.0	C/7428112-7428930	AT1G21220.1 CDS AT1G21220 ID=AT1G21220.1; Parent=AT1G21220; Name=AT1G21220.1; index=1; computational_description=copia-like retrotransposon family%2C has a 3.9e-26 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea); Dbxref=locus:2014957; Note=transposable_element_gene; locus_type=transposable_element_gene
AT1TE23940	chr1:007428112	0.0	C/7428112-7428930	AT1TE23940 transposable_element AT1TE23940 ID=AT1TE23940; Name=AT1TE23940; Alias=Unassigned
AT1G21230.1	chr1:007429980	0.0	W/7429980-7430814,7430895-7431074,7431160-7432346	AT1G21230.1 CDS AT1G21230 ID=AT1G21230.1; Parent=AT1G21230; Name=AT1G21230.1; Note=wall associated kinase 5; curator_summary=encodes a wall-associated kinase; conf_class=2; symbol=WAK5; full_name=wall associated kinase 5; computational_description=wall associated kinase 5 (WAK5)%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C kinase activity%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: plasma membrane%3B CONTAINS InterPro DOMAIN/s: EGF-like calcium-binding (InterPro:IPR001881)%2C EGF-like%2C type 3 (InterPro:IPR000742)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C EGF-like calcium-binding%2C conserved site (InterPro:IPR018097)%2C EGF-type aspartate/asparagine hydroxylation site (InterPro:IPR000152)%2C EGF calcium-binding (InterPro:IPR013091)%2C EGF-like (InterPro:IPR006210)%3B BEST Arabidopsis thaliana protein match is: cell wall-associated kinase (TAIR:AT1G21250.1)%3B Has 137298 Blast hits to 123121 proteins in 4733 species: Archae - 125%3B Bacteria - 14072%3B Metazoa - 61552%3B Fungi - 9626%3B Plants - 33595%3B Viruses - 427%3B Other Eukaryotes - 17901 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10380805, PMID:20736450, locus:2014962; locus_type=protein_coding
AT1TE23950	chr1:007433093	0.0	C/7433093-7433175	AT1TE23950 transposable_element AT1TE23950 ID=AT1TE23950; Name=AT1TE23950; Alias=ATLINE1_3A
AT1TE23955	chr1:007433495	0.0	W/7433495-7433653	AT1TE23955 transposable_element AT1TE23955 ID=AT1TE23955; Name=AT1TE23955; Alias=ATCOPIA57
AT1G05643.1	chr1:007433801	0.0	C/7433801-7434105	AT1G05643.1 lnc_RNA AT1G05643 ID=AT1G05643.1; Parent=AT1G05643; Name=AT1G05643.1; locus_type=long_noncoding_rna
AT1G21240.1	chr1:007434303	0.0	W/7434303-7435179,7435281-7435439,7435513-7436702	AT1G21240.1 CDS AT1G21240 ID=AT1G21240.1; Parent=AT1G21240; Name=AT1G21240.1; Note=wall associated kinase 3; curator_summary=encodes a wall-associated kinase; conf_class=4; symbol=WAK3; full_name=wall associated kinase 3; computational_description=wall associated kinase 3 (WAK3)%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C kinase activity%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 9 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: EGF-like calcium-binding (InterPro:IPR001881)%2C EGF-like%2C type 3 (InterPro:IPR000742)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C EGF-type aspartate/asparagine hydroxylation site (InterPro:IPR000152)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C EGF-like calcium-binding%2C conserved site (InterPro:IPR018097)%2C EGF calcium-binding (InterPro:IPR013091)%2C EGF-like (InterPro:IPR006210)%3B BEST Arabidopsis thaliana protein match is: cell wall-associated kinase (TAIR:AT1G21250.1)%3B Has 137245 Blast hits to 122966 proteins in 4824 species: Archae - 125%3B Bacteria - 13959%3B Metazoa - 61902%3B Fungi - 9553%3B Plants - 33418%3B Viruses - 443%3B Other Eukaryotes - 17845 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:10380805, PMID:15381001, PMID:15375205, PMID:15860015, PMID:17181774, PMID:18650403, PMID:20736450, PMID:23794026, PMID:23771594, locus:2014897; locus_type=protein_coding
AT1G21240.2	chr1:007434303	0.0	W/7434303-7434788,7435746-7436702	AT1G21240.2 CDS AT1G21240 ID=AT1G21240.2; Parent=AT1G21240; Name=AT1G21240.2; Note=wall associated kinase 3; symbol=WAK3; full_name=wall associated kinase 3; curator_summary=encodes a wall-associated kinase; computational_description=wall associated kinase 3 (WAK3)%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C kinase activity%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 9 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: EGF-like calcium-binding (InterPro:IPR001881)%2C EGF-like%2C type 3 (InterPro:IPR000742)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C EGF-type aspartate/asparagine hydroxylation site (InterPro:IPR000152)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C EGF-like calcium-binding%2C conserved site (InterPro:IPR018097)%2C EGF calcium-binding (InterPro:IPR013091)%2C EGF-like (InterPro:IPR006210)%3B BEST Arabidopsis thaliana protein match is: cell wall-associated kinase (TAIR:AT1G21250.1)%3B Has 137245 Blast hits to 122966 proteins in 4824 species: Archae - 125%3B Bacteria - 13959%3B Metazoa - 61902%3B Fungi - 9553%3B Plants - 33418%3B Viruses - 443%3B Other Eukaryotes - 17845 (source: NCBI BLink).; Dbxref=PMID:10380805, PMID:15381001, PMID:15375205, PMID:15860015, PMID:17181774, PMID:18650403, PMID:20736450, PMID:23794026, PMID:23771594, locus:2014897; locus_type=protein_coding
AT1G21245.1	chr1:007436842	0.0	W/7436842-7437342	AT1G21245.1 CDS AT1G21245 ID=AT1G21245.1; Parent=AT1G21245; Name=AT1G21245.1; Note=Protein kinase superfamily protein; conf_class=1; computational_description=Protein kinase superfamily protein%3B FUNCTIONS IN: protein kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%3B BEST Arabidopsis thaliana protein match is: wall associated kinase 3 (TAIR:AT1G21240.1)%3B Has 18774 Blast hits to 18543 proteins in 473 species: Archae - 0%3B Bacteria - 447%3B Metazoa - 261%3B Fungi - 0%3B Plants - 17989%3B Viruses - 0%3B Other Eukaryotes - 77 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:504956303; locus_type=protein_coding
AT1G21250.1	chr1:007439512	0.0	W/7439512-7440355,7440441-7440614,7440703-7441892	AT1G21250.1 CDS AT1G21250 ID=AT1G21250.1; Parent=AT1G21250; Name=AT1G21250.1; Note=cell wall-associated kinase; curator_summary=cell wall-associated kinase%2C may function as a signaling receptor of extracellular matrix component such as oligogalacturonides.; conf_class=2; symbol=WAK1; Alias=AtWAK1, PRO25; full_name=cell wall-associated kinase; computational_description=cell wall-associated kinase (WAK1)%3B FUNCTIONS IN: kinase activity%3B INVOLVED IN: cell surface receptor linked signaling pathway%2C response to virus%2C defense response to fungus%2C response to salicylic acid stimulus%3B LOCATED IN: plasma membrane%2C vacuole%2C plant-type cell wall%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: EGF-like calcium-binding (InterPro:IPR001881)%2C EGF-like%2C type 3 (InterPro:IPR000742)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C EGF-like calcium-binding%2C conserved site (InterPro:IPR018097)%2C EGF-type aspartate/asparagine hydroxylation site (InterPro:IPR000152)%2C EGF calcium-binding (InterPro:IPR013091)%2C EGF-like (InterPro:IPR006210)%3B BEST Arabidopsis thaliana protein match is: wall associated kinase 3 (TAIR:AT1G21240.1)%3B Has 130372 Blast hits to 120319 proteins in 4569 species: Archae - 123%3B Bacteria - 13482%3B Metazoa - 56283%3B Fungi - 9380%3B Plants - 33196%3B Viruses - 438%3B Other Eukaryotes - 17470 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10380805, PMID:9681026, PMID:8702686, PMID:1438303, PMID:11554472, PMID:11335717, PMID:16307367, PMID:16631829, PMID:16723734, PMID:18381977, PMID:18650403, PMID:19216774, PMID:15769808, PMID:20042021, PMID:20439716, PMID:20736450, PMID:19737363, PMID:21477822, PMID:21536040, locus:2014902; locus_type=protein_coding
AT1G21260.1	chr1:007442218	0.0	C/7442218-7442979	AT1G21260.1 CDS AT1G21260 ID=AT1G21260.1; Parent=AT1G21260; Name=AT1G21260.1; index=1; computational_description=copia-like retrotransposon family%2C has a 2.4e-23 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea); Dbxref=locus:2824726; Note=transposable_element_gene; locus_type=transposable_element_gene
AT1TE23980	chr1:007442218	0.0	C/7442218-7442979	AT1TE23980 transposable_element AT1TE23980 ID=AT1TE23980; Name=AT1TE23980; Alias=Unassigned
AT1TE23985	chr1:007443907	0.0	C/7443907-7444123	AT1TE23985 transposable_element AT1TE23985 ID=AT1TE23985; Name=AT1TE23985; Alias=HELITRONY3
AT1G21270.1	chr1:007444997	0.0	W/7444997-7445828,7445903-7446073,7446150-7447345	AT1G21270.1 CDS AT1G21270 ID=AT1G21270.1; Parent=AT1G21270; Name=AT1G21270.1; Note=wall-associated kinase 2; curator_summary=cytoplasmic serine/threonine protein kinase induced by salicylic acid. mutant plants exhibit a loss of cell expansion and dependence on sugars and salts for seedling growth%2C affecting the expression and activity of vacuolar invertase.; conf_class=2; symbol=WAK2; full_name=wall-associated kinase 2; computational_description=wall-associated kinase 2 (WAK2)%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C calcium ion binding%2C ATP binding%3B INVOLVED IN: cellular water homeostasis%2C protein amino acid phosphorylation%2C oligosaccharide metabolic process%2C unidimensional cell growth%2C response to salicylic acid stimulus%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 18 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: EGF-like calcium-binding (InterPro:IPR001881)%2C EGF-like%2C type 3 (InterPro:IPR000742)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C EGF-like region%2C conserved site (InterPro:IPR013032)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C EGF-like calcium-binding%2C conserved site (InterPro:IPR018097)%2C EGF-type aspartate/asparagine hydroxylation site (InterPro:IPR000152)%2C EGF calcium-binding (InterPro:IPR013091)%2C EGF-like (InterPro:IPR006210)%3B BEST Arabidopsis thaliana protein match is: wall associated kinase 5 (TAIR:AT1G21230.1)%3B Has 140654 Blast hits to 123720 proteins in 4781 species: Archae - 129%3B Bacteria - 13911%3B Metazoa - 65181%3B Fungi - 9585%3B Plants - 33448%3B Viruses - 437%3B Other Eukaryotes - 17963 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10380805, PMID:11554472, PMID:12172015, PMID:12609038, PMID:15181209, PMID:16214899, PMID:16299169, PMID:16623892, PMID:16920880, PMID:17217462, PMID:18650403, PMID:18805951, PMID:18783601, PMID:19039666, PMID:20736450, PMID:19737363, PMID:21477822, PMID:22155845, PMID:23148892, PMID:24855660, locus:2014912; locus_type=protein_coding
AT1G21280.1	chr1:007447690	0.0	C/7447690-7448403	AT1G21280.1 CDS AT1G21280 ID=AT1G21280.1; Parent=AT1G21280; Name=AT1G21280.1; Note=Copia-like polyprotein/retrotransposon; conf_class=1; computational_description=CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162)%3B Has 707 Blast hits to 705 proteins in 25 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 4%3B Fungi - 0%3B Plants - 703%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:20736450, locus:2014907; locus_type=protein_coding
AT1G21286.1	chr1:007449472	0.0	W/7449472-7449664	AT1G21286.1 pseudogenic_transcript AT1G21286 ID=AT1G21286.1; Parent=AT1G21286; Name=AT1G21286.1; index=1; Note=pseudogene; curator_summary=Pseudogene of AT1G21245%3B wall-associated kinase-related protein; Dbxref=locus:5019474615, locus:5019474615; locus_type=pseudogene; computational_description=pseudogene of wall-associated kinase 2
AT1G21290.1	chr1:007449964	0.0	C/7449964-7450695	AT1G21290.1 CDS AT1G21290 ID=AT1G21290.1; Parent=AT1G21290; Name=AT1G21290.1; index=1; computational_description=copia-like retrotransposon family%2C has a 3.7e-25 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea); Dbxref=locus:2014917; Note=transposable_element_gene; locus_type=transposable_element_gene
AT1TE23995	chr1:007449964	0.0	C/7449964-7450695	AT1TE23995 transposable_element AT1TE23995 ID=AT1TE23995; Name=AT1TE23995; Alias=Unassigned
AT1G21300.1	chr1:007451150	0.0	C/7451150-7451707	AT1G21300.1 CDS AT1G21300 ID=AT1G21300.1; Parent=AT1G21300; Name=AT1G21300.1; index=1; computational_description=copia-like retrotransposon family%2C has a 3.9e-15 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea); Dbxref=locus:2014927; Note=transposable_element_gene; locus_type=transposable_element_gene
AT1TE24000	chr1:007451150	0.0	C/7451150-7451707	AT1TE24000 transposable_element AT1TE24000 ID=AT1TE24000; Name=AT1TE24000; Alias=Unassigned
AT1TE24005	chr1:007452574	0.0	C/7452574-7452646	AT1TE24005 transposable_element AT1TE24005 ID=AT1TE24005; Name=AT1TE24005; Alias=TSCL
AT1G21310.1	chr1:007453693	0.0	C/7453693-7454988	AT1G21310.1 CDS AT1G21310 ID=AT1G21310.1; Parent=AT1G21310; Name=AT1G21310.1; Note=extensin 3; curator_summary=Encodes extensin 3.; conf_class=2; symbol=EXT3; Alias=ATEXT3, extensin 3, RSH, ROOT-SHOOT-HYPOCOTYL DEFECTIVE; full_name=extensin 3; computational_description=extensin 3 (EXT3)%3B FUNCTIONS IN: structural constituent of cell wall%3B INVOLVED IN: plant-type cell wall organization%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 7 plant structures%3B EXPRESSED DURING: 4 anthesis%2C F mature embryo stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: Extensin-like repeat (InterPro:IPR006706)%3B BEST Arabidopsis thaliana protein match is: extensin 4 (TAIR:AT1G76930.1)%3B Has 148545 Blast hits to 27416 proteins in 1232 species: Archae - 272%3B Bacteria - 19294%3B Metazoa - 56539%3B Fungi - 24663%3B Plants - 25187%3B Viruses - 4465%3B Other Eukaryotes - 18125 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11475326, PMID:12034904, PMID:12671088, PMID:14535883, PMID:14730065, PMID:15381001, PMID:16489130, PMID:16553894, PMID:16603662, PMID:16724114, PMID:17149585, PMID:17208187, PMID:18256186, PMID:18650403, PMID:23578334, locus:2014947; locus_type=protein_coding
AT1G21313.1	chr1:007453735	0.0	W/7453735-7453775,7453815-7454256	AT1G21313.1 CDS AT1G21313 ID=AT1G21313.1; Parent=AT1G21313; Name=AT1G21313.1; Note=transmembrane protein; locus_type=protein_coding
AT1TE24015	chr1:007458513	0.0	W/7458513-7458854	AT1TE24015 transposable_element AT1TE24015 ID=AT1TE24015; Name=AT1TE24015; Alias=HELITRONY1D
AT1G05647.1	chr1:007460104	0.0	C/7460104-7460501	AT1G05647.1 lnc_RNA AT1G05647 ID=AT1G05647.1; Parent=AT1G05647; Name=AT1G05647.1; locus_type=long_noncoding_rna
AT1G21320.1	chr1:007462834	0.0	C/7462834-7462934,7463141-7463222,7463320-7463381,7463467-7463752,7463837-7463970,7464600-7465200	AT1G21320.1 CDS AT1G21320 ID=AT1G21320.1; Parent=AT1G21320; Name=AT1G21320.1; Note=nucleic acid/nucleotide binding protein; conf_class=3; computational_description=nucleotide binding%3Bnucleic acid binding%3B FUNCTIONS IN: nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: flower%2C cultured cell%3B EXPRESSED DURING: petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%2C VQ (InterPro:IPR008889)%3B BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT1G21326.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2014937; locus_type=protein_coding
AT1G21320.2	chr1:007462834	0.0	C/7462834-7462934,7463141-7463222,7463320-7463381,7463467-7463752,7463837-7463970,7466068-7466164	AT1G21320.2 CDS AT1G21320 ID=AT1G21320.2; Parent=AT1G21320; Name=AT1G21320.2; Note=nucleic acid/nucleotide binding protein; conf_class=2; computational_description=nucleotide binding%3Bnucleic acid binding%3B FUNCTIONS IN: nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: flower%2C cultured cell%3B EXPRESSED DURING: petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%2C VQ (InterPro:IPR008889)%3B BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT1G21326.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2014937; locus_type=protein_coding
AT1G21320.3	chr1:007462834	0.0	C/7462834-7462934,7463141-7463222,7463320-7463381,7463467-7463752,7463837-7464076	AT1G21320.3 CDS AT1G21320 ID=AT1G21320.3; Parent=AT1G21320; Name=AT1G21320.3; Note=nucleic acid/nucleotide binding protein; computational_description=nucleotide binding%3Bnucleic acid binding%3B FUNCTIONS IN: nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: flower%2C cultured cell%3B EXPRESSED DURING: petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%2C VQ (InterPro:IPR008889)%3B BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT1G21326.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=locus:2014937; locus_type=protein_coding
AT1G21320.5	chr1:007462834	0.0	C/7462834-7462934,7463141-7463222,7463320-7463381,7463467-7463752,7463837-7463938	AT1G21320.5 CDS AT1G21320 ID=AT1G21320.5; Parent=AT1G21320; Name=AT1G21320.5; Note=nucleic acid/nucleotide binding protein; computational_description=nucleotide binding%3Bnucleic acid binding%3B FUNCTIONS IN: nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: flower%2C cultured cell%3B EXPRESSED DURING: petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%2C VQ (InterPro:IPR008889)%3B BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT1G21326.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=locus:2014937; locus_type=protein_coding
AT1G21320.4	chr1:007463411	0.0	C/7463411-7463752,7463837-7463970,7464600-7465200	AT1G21320.4 CDS AT1G21320 ID=AT1G21320.4; Parent=AT1G21320; Name=AT1G21320.4; Note=nucleic acid/nucleotide binding protein; computational_description=nucleotide binding%3Bnucleic acid binding%3B FUNCTIONS IN: nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: flower%2C cultured cell%3B EXPRESSED DURING: petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%2C VQ (InterPro:IPR008889)%3B BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT1G21326.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=locus:2014937; locus_type=protein_coding
AT1G21323.1	chr1:007466694	0.0	W/7466694-7466834,7466918-7467053,7467250-7467359	AT1G21323.1 CDS AT1G21323 ID=AT1G21323.1; Parent=AT1G21323; Name=AT1G21323.1; Note=dual specificity kinase; conf_class=10; computational_description=unknown protein%3B Has 1 Blast hits to 1 proteins in 1 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=PMID:20032078, locus:504956304; locus_type=protein_coding
AT1G21326.1	chr1:007469002	0.0	C/7469002-7469721	AT1G21326.1 CDS AT1G21326 ID=AT1G21326.1; Parent=AT1G21326; Name=AT1G21326.1; Note=VQ motif-containing protein; conf_class=4; computational_description=VQ motif-containing protein%3B CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889)%3B BEST Arabidopsis thaliana protein match is: nucleotide binding%3Bnucleic acid binding (TAIR:AT1G21320.1)%3B Has 294 Blast hits to 294 proteins in 63 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 108%3B Fungi - 21%3B Plants - 144%3B Viruses - 0%3B Other Eukaryotes - 21 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:15990873, locus:504956305; locus_type=protein_coding
AT1G05653.1	chr1:007471090	0.0	W/7471090-7471300	AT1G05653.1 lnc_RNA AT1G05653 ID=AT1G05653.1; Parent=AT1G05653; Name=AT1G05653.1; locus_type=long_noncoding_rna
AT1G05657.1	chr1:007473011	0.0	W/7473011-7473358	AT1G05657.1 lnc_RNA AT1G05657 ID=AT1G05657.1; Parent=AT1G05657; Name=AT1G05657.1; locus_type=long_noncoding_rna
AT1G21330.1	chr1:007474703	0.0	W/7474703-7475683	AT1G21330.1 CDS AT1G21330 ID=AT1G21330.1; Parent=AT1G21330; Name=AT1G21330.1; index=1; computational_description=similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G40680.1)%3B similar to hypothetical protein 23.t00046 [Brassica oleracea] (GB:ABD65629.1)%3B contains domain NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE RELATED (PTHR19446:SF34)%3B contains domain REVERSE TRANSCRIPTASES (PTHR19446); Dbxref=locus:2027067; Note=transposable_element_gene; locus_type=transposable_element_gene
AT1TE24060	chr1:007474986	0.0	W/7474986-7475697	AT1TE24060 transposable_element AT1TE24060 ID=AT1TE24060; Name=AT1TE24060; Alias=ATLINEIII
AT1G21340.1	chr1:007476087	0.0	W/7476087-7476869	AT1G21340.1 CDS AT1G21340 ID=AT1G21340.1; Parent=AT1G21340; Name=AT1G21340.1; Note=Dof-type zinc finger DNA-binding family protein; conf_class=1; computational_description=Dof-type zinc finger DNA-binding family protein%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C Dof-type (InterPro:IPR003851)%3B BEST Arabidopsis thaliana protein match is: Dof-type zinc finger DNA-binding family protein (TAIR:AT3G52440.1)%3B Has 1085 Blast hits to 1080 proteins in 56 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1080%3B Viruses - 0%3B Other Eukaryotes - 5 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11118137, PMID:12475498, PMID:12877745, locus:2027027; locus_type=protein_coding
AT1G21350.1	chr1:007477376	0.0	C/7477376-7477418,7477498-7477563,7477638-7477720,7478008-7478070,7478164-7478232,7478315-7478368,7478442-7478519	AT1G21350.1 CDS AT1G21350 ID=AT1G21350.1; Parent=AT1G21350; Name=AT1G21350.1; Note=Thioredoxin superfamily protein; conf_class=2; computational_description=Thioredoxin superfamily protein%3B FUNCTIONS IN: oxidoreductase activity%2C antioxidant activity%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335)%2C Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B Has 2579 Blast hits to 2579 proteins in 331 species: Archae - 32%3B Bacteria - 684%3B Metazoa - 4%3B Fungi - 0%3B Plants - 49%3B Viruses - 0%3B Other Eukaryotes - 1810 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:15769804, locus:2027052; locus_type=protein_coding
AT1G21350.2	chr1:007477376	0.0	C/7477376-7477418,7477498-7477563,7477638-7477720,7478008-7478070,7478164-7478232,7478315-7478368,7478617-7478682,7478779-7479012	AT1G21350.2 CDS AT1G21350 ID=AT1G21350.2; Parent=AT1G21350; Name=AT1G21350.2; Note=Thioredoxin superfamily protein; conf_class=6; computational_description=Thioredoxin superfamily protein%3B FUNCTIONS IN: oxidoreductase activity%2C antioxidant activity%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335)%2C Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B Has 2579 Blast hits to 2579 proteins in 331 species: Archae - 32%3B Bacteria - 684%3B Metazoa - 4%3B Fungi - 0%3B Plants - 49%3B Viruses - 0%3B Other Eukaryotes - 1810 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:14576160, PMID:15769804, locus:2027052; locus_type=protein_coding
AT1G21350.3	chr1:007477376	0.0	C/7477376-7477418,7477498-7477563,7477638-7477720,7478008-7478070,7478164-7478232,7478315-7478368,7478442-7478522,7478617-7478682,7478779-7479012	AT1G21350.3 CDS AT1G21350 ID=AT1G21350.3; Parent=AT1G21350; Name=AT1G21350.3; Note=Thioredoxin superfamily protein; conf_class=2; computational_description=Thioredoxin superfamily protein%3B FUNCTIONS IN: oxidoreductase activity%2C antioxidant activity%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335)%2C Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B Has 2579 Blast hits to 2579 proteins in 331 species: Archae - 32%3B Bacteria - 684%3B Metazoa - 4%3B Fungi - 0%3B Plants - 49%3B Viruses - 0%3B Other Eukaryotes - 1810 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:15769804, locus:2027052; locus_type=protein_coding
AT1G21350.4	chr1:007477376	0.0	C/7477376-7477418,7477498-7477563,7477638-7477720,7478008-7478070,7478164-7478232,7478315-7478368,7478442-7478519	AT1G21350.4 CDS AT1G21350 ID=AT1G21350.4; Parent=AT1G21350; Name=AT1G21350.4; Note=Thioredoxin superfamily protein; Dbxref=PMID:14576160, PMID:15769804, locus:2027052; computational_description=Thioredoxin superfamily protein%3B FUNCTIONS IN: oxidoreductase activity%2C antioxidant activity%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335)%2C Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B Has 2579 Blast hits to 2579 proteins in 331 species: Archae - 32%3B Bacteria - 684%3B Metazoa - 4%3B Fungi - 0%3B Plants - 49%3B Viruses - 0%3B Other Eukaryotes - 1810 (source: NCBI BLink).; locus_type=protein_coding
AT1G21350.5	chr1:007477376	0.0	C/7477376-7477418,7477498-7477563,7477638-7477720,7478008-7478070,7478164-7478232,7478315-7478368,7478442-7478522,7478617-7478682,7478779-7479051	AT1G21350.5 CDS AT1G21350 ID=AT1G21350.5; Parent=AT1G21350; Name=AT1G21350.5; Note=Thioredoxin superfamily protein; computational_description=Thioredoxin superfamily protein%3B FUNCTIONS IN: oxidoreductase activity%2C antioxidant activity%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335)%2C Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B Has 2579 Blast hits to 2579 proteins in 331 species: Archae - 32%3B Bacteria - 684%3B Metazoa - 4%3B Fungi - 0%3B Plants - 49%3B Viruses - 0%3B Other Eukaryotes - 1810 (source: NCBI BLink).; Dbxref=PMID:14576160, PMID:15769804, locus:2027052; locus_type=protein_coding
AT1G21360.1	chr1:007481365	0.0	W/7481365-7481533,7481680-7481735,7482135-7482265,7482599-7482734,7482912-7483055,7483202-7483237	AT1G21360.1 CDS AT1G21360 ID=AT1G21360.1; Parent=AT1G21360; Name=AT1G21360.1; Note=glycolipid transfer protein 2; conf_class=1; symbol=GLTP2; full_name=glycolipid transfer protein 2; computational_description=glycolipid transfer protein 2 (GLTP2)%3B FUNCTIONS IN: glycolipid transporter activity%2C glycolipid binding%3B INVOLVED IN: glycolipid transport%3B LOCATED IN: cytoplasm%3B CONTAINS InterPro DOMAIN/s: Glycolipid transfer protein%2C GLTP (InterPro:IPR014830)%3B BEST Arabidopsis thaliana protein match is: Glycolipid transfer protein (GLTP) family protein (TAIR:AT3G21260.3)%3B Has 509 Blast hits to 509 proteins in 154 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 240%3B Fungi - 112%3B Plants - 114%3B Viruses - 0%3B Other Eukaryotes - 43 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:2027042; locus_type=protein_coding
AT1G21360.3	chr1:007481365	0.0	W/7481365-7481533,7481680-7481735,7482135-7482265,7482599-7482833	AT1G21360.3 CDS AT1G21360 ID=AT1G21360.3; Parent=AT1G21360; Name=AT1G21360.3; Note=glycolipid transfer protein 2; symbol=GLTP2; full_name=glycolipid transfer protein 2; computational_description=glycolipid transfer protein 2 (GLTP2)%3B FUNCTIONS IN: glycolipid transporter activity%2C glycolipid binding%3B INVOLVED IN: glycolipid transport%3B LOCATED IN: cytoplasm%3B CONTAINS InterPro DOMAIN/s: Glycolipid transfer protein%2C GLTP (InterPro:IPR014830)%3B BEST Arabidopsis thaliana protein match is: Glycolipid transfer protein (GLTP) family protein (TAIR:AT3G21260.3)%3B Has 509 Blast hits to 509 proteins in 154 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 240%3B Fungi - 112%3B Plants - 114%3B Viruses - 0%3B Other Eukaryotes - 43 (source: NCBI BLink).; Dbxref=locus:2027042; locus_type=protein_coding
AT1G21360.2	chr1:007481697	0.0	W/7481697-7481735,7482135-7482265,7482599-7482734,7482912-7483055,7483202-7483237	AT1G21360.2 CDS AT1G21360 ID=AT1G21360.2; Parent=AT1G21360; Name=AT1G21360.2; Note=glycolipid transfer protein 2; symbol=GLTP2; full_name=glycolipid transfer protein 2; computational_description=glycolipid transfer protein 2 (GLTP2)%3B FUNCTIONS IN: glycolipid transporter activity%2C glycolipid binding%3B INVOLVED IN: glycolipid transport%3B LOCATED IN: cytoplasm%3B CONTAINS InterPro DOMAIN/s: Glycolipid transfer protein%2C GLTP (InterPro:IPR014830)%3B BEST Arabidopsis thaliana protein match is: Glycolipid transfer protein (GLTP) family protein (TAIR:AT3G21260.3)%3B Has 509 Blast hits to 509 proteins in 154 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 240%3B Fungi - 112%3B Plants - 114%3B Viruses - 0%3B Other Eukaryotes - 43 (source: NCBI BLink).; Dbxref=locus:2027042; locus_type=protein_coding
AT1G21370.1	chr1:007484250	0.0	W/7484250-7484838,7484920-7485041,7485134-7485451	AT1G21370.1 CDS AT1G21370 ID=AT1G21370.1; Parent=AT1G21370; Name=AT1G21370.1; Note=transmembrane protein; conf_class=1; computational_description=unknown protein%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF218 (InterPro:IPR003848)%3B Has 160 Blast hits to 160 proteins in 86 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 102%3B Plants - 44%3B Viruses - 0%3B Other Eukaryotes - 14 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:18650403, PMID:18775970, locus:2027057; locus_type=protein_coding
AT1G21370.2	chr1:007484250	0.0	W/7484250-7484838,7484920-7485041,7485134-7485451	AT1G21370.2 CDS AT1G21370 ID=AT1G21370.2; Parent=AT1G21370; Name=AT1G21370.2; Note=transmembrane protein; conf_class=2; computational_description=unknown protein%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF218 (InterPro:IPR003848)%3B Has 160 Blast hits to 160 proteins in 86 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 102%3B Plants - 44%3B Viruses - 0%3B Other Eukaryotes - 14 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18650403, PMID:18775970, locus:2027057; locus_type=protein_coding
AT1G21380.1	chr1:007485806	0.0	C/7485806-7486415,7486496-7486684,7486781-7486866,7486949-7487030,7487126-7487277,7487360-7487473,7487563-7487661,7487744-7487822,7487923-7488032	AT1G21380.1 CDS AT1G21380 ID=AT1G21380.1; Parent=AT1G21380; Name=AT1G21380.1; Note=Target of Myb protein 1; conf_class=2; computational_description=Target of Myb protein 1%3B FUNCTIONS IN: protein transporter activity%3B INVOLVED IN: intracellular protein transport%2C intra-Golgi vesicle-mediated transport%3B LOCATED IN: Golgi stack%2C intracellular%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: VHS (InterPro:IPR002014)%2C Target of Myb protein 1 (InterPro:IPR014645)%2C GAT (InterPro:IPR004152)%2C VHS subgroup (InterPro:IPR018205)%2C ENTH/VHS (InterPro:IPR008942)%3B BEST Arabidopsis thaliana protein match is: Target of Myb protein 1 (TAIR:AT1G76970.1)%3B Has 1707 Blast hits to 1699 proteins in 198 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 892%3B Fungi - 452%3B Plants - 279%3B Viruses - 0%3B Other Eukaryotes - 78 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15634198, PMID:16488176, PMID:18650403, PMID:24699223, locus:2027037; locus_type=protein_coding
AT1G21390.1	chr1:007489385	0.0	C/7489385-7489481,7489905-7490554	AT1G21390.1 CDS AT1G21390 ID=AT1G21390.1; Parent=AT1G21390; Name=AT1G21390.1; Note=embryo defective 2170; conf_class=1; symbol=emb2170; full_name=embryo defective 2170; computational_description=embryo defective 2170 (emb2170)%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76980.2)%3B Has 51 Blast hits to 51 proteins in 18 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1%3B Fungi - 0%3B Plants - 42%3B Viruses - 0%3B Other Eukaryotes - 8 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14576160, PMID:15266054, locus:2027017; locus_type=protein_coding
AT1G05663.1	chr1:007490992	0.0	W/7490992-7491645	AT1G05663.1 lnc_RNA AT1G05663 ID=AT1G05663.1; Parent=AT1G05663; Name=AT1G05663.1; locus_type=long_noncoding_rna
AT1G05667.1	chr1:007491251	0.0	C/7491251-7491464	AT1G05667.1 lnc_RNA AT1G05667 ID=AT1G05667.1; Parent=AT1G05667; Name=AT1G05667.1; locus_type=long_noncoding_rna
AT1G05673.1	chr1:007491379	0.0	C/7491379-7491489	AT1G05673.1 snRNA AT1G05673 ID=AT1G05673.1; Parent=AT1G05673; Name=AT1G05673.1; Note=U6atac; symbol=U6atac2; Dbxref=PMID:15575968; Alias=U6atac2; locus_type=small_nuclear_rna
AT1G21395.1	chr1:007492011	0.0	W/7492011-7492232	AT1G21395.1 CDS AT1G21395 ID=AT1G21395.1; Parent=AT1G21395; Name=AT1G21395.1; Note=transmembrane protein; conf_class=1; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G26865.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11152613, locus:1006230727; locus_type=protein_coding
AT1G21400.5	chr1:007493336	0.0	W/7493336-7493725,7494444-7494581,7494663-7494845,7494923-7495080,7495167-7495266,7495366-7495477,7495572-7495711,7495801-7495986,7496073-7496240	AT1G21400.5 CDS AT1G21400 ID=AT1G21400.5; Parent=AT1G21400; Name=AT1G21400.5; Note=Thiamin diphosphate-binding fold (THDP-binding) superfamily protein; computational_description=Thiamin diphosphate-binding fold (THDP-binding) superfamily protein%3B FUNCTIONS IN: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C disulfide as acceptor%2C 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity%3B INVOLVED IN: metabolic process%3B EXPRESSED IN: guard cell%3B CONTAINS InterPro DOMAIN/s: Dehydrogenase%2C E1 component (InterPro:IPR001017)%3B BEST Arabidopsis thaliana protein match is: Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (TAIR:AT5G09300.1)%3B Has 9510 Blast hits to 9506 proteins in 1925 species: Archae - 124%3B Bacteria - 6142%3B Metazoa - 513%3B Fungi - 243%3B Plants - 187%3B Viruses - 0%3B Other Eukaryotes - 2301 (source: NCBI BLink).; Dbxref=PMID:14973164, PMID:15047901, PMID:15272001, PMID:15824099, PMID:16055629, PMID:16159328, PMID:16359384, PMID:17580301, PMID:17885809, PMID:18650403, PMID:18616834, PMID:18687588, locus:2027072; locus_type=protein_coding
AT1G21400.6	chr1:007493336	0.0	W/7493336-7493725,7494444-7494581,7494663-7494845,7494923-7495080,7495167-7495266,7495366-7495494	AT1G21400.6 CDS AT1G21400 ID=AT1G21400.6; Parent=AT1G21400; Name=AT1G21400.6; Note=Thiamin diphosphate-binding fold (THDP-binding) superfamily protein; computational_description=Thiamin diphosphate-binding fold (THDP-binding) superfamily protein%3B FUNCTIONS IN: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C disulfide as acceptor%2C 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity%3B INVOLVED IN: metabolic process%3B EXPRESSED IN: guard cell%3B CONTAINS InterPro DOMAIN/s: Dehydrogenase%2C E1 component (InterPro:IPR001017)%3B BEST Arabidopsis thaliana protein match is: Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (TAIR:AT5G09300.1)%3B Has 9510 Blast hits to 9506 proteins in 1925 species: Archae - 124%3B Bacteria - 6142%3B Metazoa - 513%3B Fungi - 243%3B Plants - 187%3B Viruses - 0%3B Other Eukaryotes - 2301 (source: NCBI BLink).; Dbxref=PMID:14973164, PMID:15047901, PMID:15272001, PMID:15824099, PMID:16055629, PMID:16159328, PMID:16359384, PMID:17580301, PMID:17885809, PMID:18650403, PMID:18616834, PMID:18687588, locus:2027072; locus_type=protein_coding
AT1G21400.1	chr1:007493492	0.0	W/7493492-7493725,7494444-7494581,7494663-7494845,7494923-7495080,7495167-7495266,7495366-7495477,7495572-7495711,7495801-7495986,7496073-7496240	AT1G21400.1 CDS AT1G21400 ID=AT1G21400.1; Parent=AT1G21400; Name=AT1G21400.1; Note=Thiamin diphosphate-binding fold (THDP-binding) superfamily protein; conf_class=2; computational_description=Thiamin diphosphate-binding fold (THDP-binding) superfamily protein%3B FUNCTIONS IN: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C disulfide as acceptor%2C 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity%3B INVOLVED IN: metabolic process%3B EXPRESSED IN: guard cell%3B CONTAINS InterPro DOMAIN/s: Dehydrogenase%2C E1 component (InterPro:IPR001017)%3B BEST Arabidopsis thaliana protein match is: Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (TAIR:AT5G09300.1)%3B Has 9510 Blast hits to 9506 proteins in 1925 species: Archae - 124%3B Bacteria - 6142%3B Metazoa - 513%3B Fungi - 243%3B Plants - 187%3B Viruses - 0%3B Other Eukaryotes - 2301 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14973164, PMID:15047901, PMID:15272001, PMID:15824099, PMID:16055629, PMID:16159328, PMID:16359384, PMID:17580301, PMID:17885809, PMID:18650403, PMID:18616834, PMID:18687588, locus:2027072; locus_type=protein_coding
AT1G21400.3	chr1:007494169	0.0	W/7494169-7494177,7494444-7494581,7494663-7494845,7494923-7495080,7495167-7495266,7495366-7495477,7495572-7495711,7495801-7495986,7496073-7496240	AT1G21400.3 CDS AT1G21400 ID=AT1G21400.3; Parent=AT1G21400; Name=AT1G21400.3; Note=Thiamin diphosphate-binding fold (THDP-binding) superfamily protein; computational_description=Thiamin diphosphate-binding fold (THDP-binding) superfamily protein%3B FUNCTIONS IN: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C disulfide as acceptor%2C 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity%3B INVOLVED IN: metabolic process%3B EXPRESSED IN: guard cell%3B CONTAINS InterPro DOMAIN/s: Dehydrogenase%2C E1 component (InterPro:IPR001017)%3B BEST Arabidopsis thaliana protein match is: Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (TAIR:AT5G09300.1)%3B Has 9510 Blast hits to 9506 proteins in 1925 species: Archae - 124%3B Bacteria - 6142%3B Metazoa - 513%3B Fungi - 243%3B Plants - 187%3B Viruses - 0%3B Other Eukaryotes - 2301 (source: NCBI BLink).; Dbxref=PMID:14973164, PMID:15047901, PMID:15272001, PMID:15824099, PMID:16055629, PMID:16159328, PMID:16359384, PMID:17580301, PMID:17885809, PMID:18650403, PMID:18616834, PMID:18687588, locus:2027072; locus_type=protein_coding
AT1G21400.2	chr1:007494486	0.0	W/7494486-7494581,7494663-7494845,7494923-7495080,7495167-7495266,7495366-7495477,7495572-7495711,7495801-7495986,7496073-7496240	AT1G21400.2 CDS AT1G21400 ID=AT1G21400.2; Parent=AT1G21400; Name=AT1G21400.2; Note=Thiamin diphosphate-binding fold (THDP-binding) superfamily protein; computational_description=Thiamin diphosphate-binding fold (THDP-binding) superfamily protein%3B FUNCTIONS IN: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C disulfide as acceptor%2C 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity%3B INVOLVED IN: metabolic process%3B EXPRESSED IN: guard cell%3B CONTAINS InterPro DOMAIN/s: Dehydrogenase%2C E1 component (InterPro:IPR001017)%3B BEST Arabidopsis thaliana protein match is: Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (TAIR:AT5G09300.1)%3B Has 9510 Blast hits to 9506 proteins in 1925 species: Archae - 124%3B Bacteria - 6142%3B Metazoa - 513%3B Fungi - 243%3B Plants - 187%3B Viruses - 0%3B Other Eukaryotes - 2301 (source: NCBI BLink).; Dbxref=PMID:14973164, PMID:15047901, PMID:15272001, PMID:15824099, PMID:16055629, PMID:16159328, PMID:16359384, PMID:17580301, PMID:17885809, PMID:18650403, PMID:18616834, PMID:18687588, locus:2027072; locus_type=protein_coding
AT1G21400.4	chr1:007494486	0.0	W/7494486-7494581,7494663-7494845,7494923-7495080,7495167-7495266,7495366-7495477,7495572-7495711,7495801-7495986,7496073-7496240	AT1G21400.4 CDS AT1G21400 ID=AT1G21400.4; Parent=AT1G21400; Name=AT1G21400.4; Note=Thiamin diphosphate-binding fold (THDP-binding) superfamily protein; computational_description=Thiamin diphosphate-binding fold (THDP-binding) superfamily protein%3B FUNCTIONS IN: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C disulfide as acceptor%2C 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity%3B INVOLVED IN: metabolic process%3B EXPRESSED IN: guard cell%3B CONTAINS InterPro DOMAIN/s: Dehydrogenase%2C E1 component (InterPro:IPR001017)%3B BEST Arabidopsis thaliana protein match is: Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (TAIR:AT5G09300.1)%3B Has 9510 Blast hits to 9506 proteins in 1925 species: Archae - 124%3B Bacteria - 6142%3B Metazoa - 513%3B Fungi - 243%3B Plants - 187%3B Viruses - 0%3B Other Eukaryotes - 2301 (source: NCBI BLink).; Dbxref=PMID:14973164, PMID:15047901, PMID:15272001, PMID:15824099, PMID:16055629, PMID:16159328, PMID:16359384, PMID:17580301, PMID:17885809, PMID:18650403, PMID:18616834, PMID:18687588, locus:2027072; locus_type=protein_coding
AT1G21410.1	chr1:007497479	0.0	W/7497479-7497696,7498245-7498593,7498698-7498839,7499013-7499386	AT1G21410.1 CDS AT1G21410 ID=AT1G21410.1; Parent=AT1G21410; Name=AT1G21410.1; Note=F-box/RNI-like superfamily protein; curator_summary=AtSKP2%3B1 is a homolog of human SKP2%2C the human F-box protein that recruits E2F1. Contains an F-box motif at the N-terminal region and a C-terminal Leu-rich repeat domain. Forms part of an E3-ubiquitin-ligase SCF (Skp1%2C cullin%2C F-box) complex and recruits phosphorylated AtE2Fc%2C a transcriptional factor that might play a role in cell division and during the transition from skotomorphogenesis to photomorphogenesis. AtSKP2%3B1 (At1g21410) and AtSKP2%3B2 (At1g77000) may be duplicated genes.; conf_class=2; symbol=SKP2A; computational_description=SKP2A%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%2C Leucine-rich repeat%2C cysteine-containing subtype (InterPro:IPR006553)%3B BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT1G77000.2)%3B Has 8874 Blast hits to 3879 proteins in 263 species: Archae - 0%3B Bacteria - 386%3B Metazoa - 3510%3B Fungi - 1080%3B Plants - 2969%3B Viruses - 9%3B Other Eukaryotes - 920 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12468727, PMID:16489130, PMID:16920782, PMID:18650403, PMID:18036202, PMID:19704565, PMID:23226441, locus:2027082; locus_type=protein_coding
AT1G21410.2	chr1:007497479	0.0	W/7497479-7497696,7498245-7498593,7498698-7498839,7499013-7499386	AT1G21410.2 CDS AT1G21410 ID=AT1G21410.2; Parent=AT1G21410; Name=AT1G21410.2; Note=F-box/RNI-like superfamily protein; symbol=SKP2A; Dbxref=PMID:12468727, PMID:16489130, PMID:16920782, PMID:18650403, PMID:18036202, PMID:19704565, PMID:23226441, locus:2027082; curator_summary=AtSKP2%3B1 is a homolog of human SKP2%2C the human F-box protein that recruits E2F1. Contains an F-box motif at the N-terminal region and a C-terminal Leu-rich repeat domain. Forms part of an E3-ubiquitin-ligase SCF (Skp1%2C cullin%2C F-box) complex and recruits phosphorylated AtE2Fc%2C a transcriptional factor that might play a role in cell division and during the transition from skotomorphogenesis to photomorphogenesis. AtSKP2%3B1 (At1g21410) and AtSKP2%3B2 (At1g77000) may be duplicated genes.; computational_description=SKP2A%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%2C Leucine-rich repeat%2C cysteine-containing subtype (InterPro:IPR006553)%3B BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT1G77000.2)%3B Has 8874 Blast hits to 3879 proteins in 263 species: Archae - 0%3B Bacteria - 386%3B Metazoa - 3510%3B Fungi - 1080%3B Plants - 2969%3B Viruses - 9%3B Other Eukaryotes - 920 (source: NCBI BLink).; locus_type=protein_coding
AT1G21420.1	chr1:007499733	0.0	C/7499733-7499804	AT1G21420.1 tRNA AT1G21420 ID=AT1G21420.1; Parent=AT1G21420; Note=tRNA-Gln; computational_description=tRNA-Gln (anticodon: TTG); Dbxref=PMID:8980477, PMID:23066098, PMID:8980477, locus:3689471; Name=AT1G21420.1; locus_type=pre_trna
AT1G21430.1	chr1:007500845	0.0	W/7500845-7501462,7501549-7501905,7501986-7502186	AT1G21430.1 CDS AT1G21430 ID=AT1G21430.1; Parent=AT1G21430; Name=AT1G21430.1; Note=Flavin-binding monooxygenase family protein; conf_class=4; symbol=YUC11; computational_description=YUC11%3B FUNCTIONS IN: NADP or NADPH binding%2C oxidoreductase activity%2C monooxygenase activity%2C FAD binding%2C flavin-containing monooxygenase activity%3B INVOLVED IN: regulation of anatomical structure morphogenesis%3B LOCATED IN: membrane%3B EXPRESSED IN: leaf%3B CONTAINS InterPro DOMAIN/s: Pyridine nucleotide-disulphide oxidoreductase%2C class-II (InterPro:IPR000103)%2C FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027)%2C Flavin-containing monooxygenase-like (InterPro:IPR020946)%3B BEST Arabidopsis thaliana protein match is: Flavin-containing monooxygenase family protein (TAIR:AT1G48910.1)%3B Has 9762 Blast hits to 9749 proteins in 1331 species: Archae - 35%3B Bacteria - 5524%3B Metazoa - 772%3B Fungi - 1287%3B Plants - 602%3B Viruses - 0%3B Other Eukaryotes - 1542 (source: NCBI BLink).; conf_rating=***; Dbxref=locus:2026967; locus_type=protein_coding
AT1G21440.1	chr1:007502325	0.0	C/7502325-7502690,7502781-7502936,7503045-7503064,7503174-7503198,7503385-7503467,7503663-7503736,7503817-7504103	AT1G21440.1 CDS AT1G21440 ID=AT1G21440.1; Parent=AT1G21440; Name=AT1G21440.1; Note=Phosphoenolpyruvate carboxylase family protein; conf_class=2; computational_description=Phosphoenolpyruvate carboxylase family protein%3B FUNCTIONS IN: isocitrate lyase activity%2C catalytic activity%3B INVOLVED IN: metabolic process%3B LOCATED IN: chloroplast%2C chloroplast stroma%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase%2C catalytic core (InterPro:IPR015813)%2C Isocitrate lyase/phosphorylmutase%2C conserved site (InterPro:IPR018523)%2C Isocitrate lyase/phosphorylmutase (InterPro:IPR000918)%3B BEST Arabidopsis thaliana protein match is: Phosphoenolpyruvate carboxylase family protein (TAIR:AT1G77060.1)%3B Has 8771 Blast hits to 8771 proteins in 1489 species: Archae - 119%3B Bacteria - 4900%3B Metazoa - 32%3B Fungi - 522%3B Plants - 172%3B Viruses - 0%3B Other Eukaryotes - 3026 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:17163439, PMID:17411438, PMID:18650403, locus:2027022; locus_type=protein_coding
AT1G21440.2	chr1:007502325	0.0	C/7502325-7502690,7502781-7502936,7503045-7503064,7503174-7503198,7503385-7503467,7503663-7503736,7503817-7504103	AT1G21440.2 CDS AT1G21440 ID=AT1G21440.2; Parent=AT1G21440; Name=AT1G21440.2; Note=Phosphoenolpyruvate carboxylase family protein; Dbxref=PMID:14576160, PMID:17163439, PMID:17411438, PMID:18650403, locus:2027022; computational_description=Phosphoenolpyruvate carboxylase family protein%3B FUNCTIONS IN: isocitrate lyase activity%2C catalytic activity%3B INVOLVED IN: metabolic process%3B LOCATED IN: chloroplast%2C chloroplast stroma%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase%2C catalytic core (InterPro:IPR015813)%2C Isocitrate lyase/phosphorylmutase%2C conserved site (InterPro:IPR018523)%2C Isocitrate lyase/phosphorylmutase (InterPro:IPR000918)%3B BEST Arabidopsis thaliana protein match is: Phosphoenolpyruvate carboxylase family protein (TAIR:AT1G77060.1)%3B Has 8771 Blast hits to 8771 proteins in 1489 species: Archae - 119%3B Bacteria - 4900%3B Metazoa - 32%3B Fungi - 522%3B Plants - 172%3B Viruses - 0%3B Other Eukaryotes - 3026 (source: NCBI BLink).; locus_type=protein_coding
AT1TE24160	chr1:007504605	0.0	C/7504605-7505040	AT1TE24160 transposable_element AT1TE24160 ID=AT1TE24160; Name=AT1TE24160; Alias=ATREP3
AT1TE24165	chr1:007505041	0.0	C/7505041-7505756	AT1TE24165 transposable_element AT1TE24165 ID=AT1TE24165; Name=AT1TE24165; Alias=ATREP10B
AT1TE24170	chr1:007505757	0.0	W/7505757-7505989	AT1TE24170 transposable_element AT1TE24170 ID=AT1TE24170; Name=AT1TE24170; Alias=ATDNA2T9C
AT1G21450.1	chr1:007509721	0.0	W/7509721-7511502	AT1G21450.1 CDS AT1G21450 ID=AT1G21450.1; Parent=AT1G21450; Name=AT1G21450.1; Note=SCARECROW-like 1; curator_summary=Encodes a scarecrow-like protein (SCL1). Member of GRAS gene family.; conf_class=2; symbol=SCL1; full_name=SCARECROW-like 1; computational_description=SCARECROW-like 1 (SCL1)%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202)%3B BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT5G48150.2)%3B Has 2480 Blast hits to 2441 proteins in 303 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 0%3B Fungi - 0%3B Plants - 2475%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10817761, PMID:11118137, PMID:12169696, PMID:14760535, PMID:16367961, PMID:16330523, PMID:16489130, PMID:15604690, PMID:18650403, PMID:24377444, locus:2026982; locus_type=protein_coding
AT1G21460.1	chr1:007512030	0.0	C/7512030-7512206,7512294-7512413,7512507-7512786,7512883-7512978,7513094-7513130,7513248-7513281	AT1G21460.1 CDS AT1G21460 ID=AT1G21460.1; Parent=AT1G21460; Name=AT1G21460.1; Note=Nodulin MtN3 family protein; conf_class=2; symbol=SWEET1; computational_description=Nodulin MtN3 family protein%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%2C integral to membrane%2C membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: MtN3/saliva-related transmembrane protein%2C conserved region (InterPro:IPR018169)%2C RAG1-activating protein 1 homologue (InterPro:IPR018179)%2C RAG1-activating protein-1-related (InterPro:IPR004316)%3B BEST Arabidopsis thaliana protein match is: Nodulin MtN3 family protein (TAIR:AT5G53190.1)%3B Has 988 Blast hits to 930 proteins in 114 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 221%3B Fungi - 0%3B Plants - 643%3B Viruses - 0%3B Other Eukaryotes - 124 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15047901, PMID:17064408, PMID:18775970, PMID:20736450, PMID:22253225, PMID:22157085, PMID:24027245, locus:2026997; locus_type=protein_coding
AT1G21460.2	chr1:007512252	0.0	C/7512252-7512413,7512507-7512786,7512883-7512978,7513094-7513130,7513248-7513281	AT1G21460.2 CDS AT1G21460 ID=AT1G21460.2; Parent=AT1G21460; Name=AT1G21460.2; Note=Nodulin MtN3 family protein; symbol=SWEET1; computational_description=Nodulin MtN3 family protein%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%2C integral to membrane%2C membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: MtN3/saliva-related transmembrane protein%2C conserved region (InterPro:IPR018169)%2C RAG1-activating protein 1 homologue (InterPro:IPR018179)%2C RAG1-activating protein-1-related (InterPro:IPR004316)%3B BEST Arabidopsis thaliana protein match is: Nodulin MtN3 family protein (TAIR:AT5G53190.1)%3B Has 988 Blast hits to 930 proteins in 114 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 221%3B Fungi - 0%3B Plants - 643%3B Viruses - 0%3B Other Eukaryotes - 124 (source: NCBI BLink).; Dbxref=PMID:15047901, PMID:17064408, PMID:18775970, PMID:20736450, PMID:22253225, PMID:22157085, PMID:24027245, locus:2026997; locus_type=protein_coding
AT1G21470.1	chr1:007516210	0.0	C/7516210-7516410,7516520-7516597	AT1G21470.1 CDS AT1G21470 ID=AT1G21470.1; Parent=AT1G21470; Name=AT1G21470.1; Note=hypothetical protein; conf_class=4; computational_description=BEST Arabidopsis thaliana protein match is: CLPC homologue 1 (TAIR:AT5G50920.1)%3B Has 326 Blast hits to 324 proteins in 95 species: Archae - 0%3B Bacteria - 130%3B Metazoa - 0%3B Fungi - 0%3B Plants - 67%3B Viruses - 0%3B Other Eukaryotes - 129 (source: NCBI BLink).; conf_rating=***; Dbxref=locus:2825268; locus_type=protein_coding
AT1G21470.2	chr1:007516210	0.0	C/7516210-7516410,7516520-7516597	AT1G21470.2 CDS AT1G21470 ID=AT1G21470.2; Parent=AT1G21470; Name=AT1G21470.2; Note=hypothetical protein; computational_description=BEST Arabidopsis thaliana protein match is: CLPC homologue 1 (TAIR:AT5G50920.1)%3B Has 326 Blast hits to 324 proteins in 95 species: Archae - 0%3B Bacteria - 130%3B Metazoa - 0%3B Fungi - 0%3B Plants - 67%3B Viruses - 0%3B Other Eukaryotes - 129 (source: NCBI BLink).; Dbxref=locus:2825268; locus_type=protein_coding
AT1G21480.1	chr1:007519116	0.0	C/7519116-7519345,7519446-7519581,7519676-7519819,7519955-7520173,7520431-7520500,7520600-7520664,7520772-7520918,7521049-7521426	AT1G21480.1 CDS AT1G21480 ID=AT1G21480.1; Parent=AT1G21480; Name=AT1G21480.1; Note=Exostosin family protein; conf_class=1; computational_description=Exostosin family protein%3B CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263)%3B BEST Arabidopsis thaliana protein match is: FRA8 homolog (TAIR:AT5G22940.1)%3B Has 1205 Blast hits to 1196 proteins in 102 species: Archae - 0%3B Bacteria - 8%3B Metazoa - 259%3B Fungi - 4%3B Plants - 850%3B Viruses - 0%3B Other Eukaryotes - 84 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15020758, PMID:16618929, PMID:22487254, locus:2027002; locus_type=protein_coding
AT1G21480.2	chr1:007519372	0.0	C/7519372-7519581,7519676-7519819,7519955-7520173,7520431-7520500,7520600-7520664,7520772-7520918,7521049-7521426	AT1G21480.2 CDS AT1G21480 ID=AT1G21480.2; Parent=AT1G21480; Name=AT1G21480.2; Note=Exostosin family protein; conf_class=2; computational_description=Exostosin family protein%3B CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263)%3B BEST Arabidopsis thaliana protein match is: FRA8 homolog (TAIR:AT5G22940.1)%3B Has 1205 Blast hits to 1196 proteins in 102 species: Archae - 0%3B Bacteria - 8%3B Metazoa - 259%3B Fungi - 4%3B Plants - 850%3B Viruses - 0%3B Other Eukaryotes - 84 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15020758, PMID:16618929, PMID:22487254, locus:2027002; locus_type=protein_coding
AT1G21475.1	chr1:007524086	0.0	C/7524086-7524631	AT1G21475.1 CDS AT1G21475 ID=AT1G21475.1; Parent=AT1G21475; Name=AT1G21475.1; Note=hypothetical protein (DUF506); conf_class=4; computational_description=Protein of unknown function (DUF506) %3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF506%2C plant (InterPro:IPR006502)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF506) (TAIR:AT3G07350.1)%3B Has 13 Blast hits to 13 proteins in 4 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 13%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=***; Dbxref=locus:504956259; locus_type=protein_coding
AT1TE24240	chr1:007526122	0.0	C/7526122-7526145	AT1TE24240 transposable_element AT1TE24240 ID=AT1TE24240; Name=AT1TE24240; Alias=ATGP9B
AT1TE24245	chr1:007526146	0.0	C/7526146-7526520	AT1TE24245 transposable_element AT1TE24245 ID=AT1TE24245; Name=AT1TE24245; Alias=ATGP9B
AT1G21490.1	chr1:007527079	0.0	C/7527079-7528202	AT1G21490.1 pseudogenic_transcript AT1G21490 ID=AT1G21490.1; Parent=AT1G21490; Name=AT1G21490.1; index=1; Note=pseudogene; computational_description=pseudogene%2C hypothetical protein; Dbxref=locus:2825263, locus:2825263; locus_type=pseudogene
AT1TE24250	chr1:007528010	0.0	C/7528010-7528105	AT1TE24250 transposable_element AT1TE24250 ID=AT1TE24250; Name=AT1TE24250; Alias=ATREP3
AT1TE24255	chr1:007528106	0.0	W/7528106-7529158	AT1TE24255 transposable_element AT1TE24255 ID=AT1TE24255; Name=AT1TE24255; Alias=ATREP10D
AT1G21500.1	chr1:007530047	0.0	C/7530047-7530302,7530830-7530954	AT1G21500.1 CDS AT1G21500 ID=AT1G21500.1; Parent=AT1G21500; Name=AT1G21500.1; Note=hypothetical protein; conf_class=2; computational_description=unknown protein%3B Has 29 Blast hits to 29 proteins in 12 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 2%3B Plants - 27%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11719511, PMID:11826309, PMID:14576160, PMID:18650403, locus:2026962; locus_type=protein_coding
AT1G21510.1	chr1:007531534	0.0	C/7531534-7532505	AT1G21510.1 CDS AT1G21510 ID=AT1G21510.1; Parent=AT1G21510; Name=AT1G21510.1; Note=TPRXL; conf_class=1; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: N-terminal protein myristoylation%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: cotyledon%3B Has 380 Blast hits to 286 proteins in 63 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 254%3B Fungi - 44%3B Plants - 13%3B Viruses - 5%3B Other Eukaryotes - 58 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12912986, PMID:16297073, locus:2026977; locus_type=protein_coding
AT1G21520.1	chr1:007534533	0.0	C/7534533-7534733	AT1G21520.1 CDS AT1G21520 ID=AT1G21520.1; Parent=AT1G21520; Name=AT1G21520.1; Note=hypothetical protein; conf_class=1; computational_description=unknown protein%3B Has 9 Blast hits to 9 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 9%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11351099, PMID:15086809, PMID:15489280, PMID:16766691, PMID:18307823, PMID:18539592, PMID:18614705, locus:2026992; locus_type=protein_coding
AT1G21525.1	chr1:007537075	0.0	C/7537075-7537650	AT1G21525.1 pseudogenic_transcript AT1G21525 ID=AT1G21525.1; Parent=AT1G21525; Name=AT1G21525.1; curator_summary=pseudogene of unknown protein; Note=pseudogene; computational_description=expressed protein; Dbxref=locus:504956260; locus_type=pseudogene
AT1G21528.1	chr1:007542830	0.0	C/7542830-7543039	AT1G21528.1 CDS AT1G21528 ID=AT1G21528.1; Parent=AT1G21528; Name=AT1G21528.1; Note=hypothetical protein; conf_class=1; computational_description=unknown protein%3B Has 2 Blast hits to 2 proteins in 1 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 2%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:20032078, locus:4010713458; locus_type=protein_coding
AT1G21529.1	chr1:007543924	0.0	C/7543924-7544678	AT1G21529.1 ncRNA AT1G21529 ID=AT1G21529.1; Parent=AT1G21529; Name=AT1G21529.1; index=1; Dbxref=locus:6530298145; Note=other_RNA; locus_type=other_rna
AT1G21530.1	chr1:007545151	0.0	C/7545151-7545900,7546043-7546936	AT1G21530.1 CDS AT1G21530 ID=AT1G21530.1; Parent=AT1G21530; Name=AT1G21530.1; Note=AMP-dependent synthetase and ligase family protein; conf_class=1; computational_description=AMP-dependent synthetase and ligase family protein%3B FUNCTIONS IN: catalytic activity%3B INVOLVED IN: metabolic process%3B CONTAINS InterPro DOMAIN/s: AMP-binding%2C conserved site (InterPro:IPR020845)%2C AMP-dependent synthetase/ligase (InterPro:IPR000873)%3B BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT1G21540.1)%3B Has 77218 Blast hits to 70321 proteins in 3603 species: Archae - 1163%3B Bacteria - 50491%3B Metazoa - 3382%3B Fungi - 3676%3B Plants - 2327%3B Viruses - 1%3B Other Eukaryotes - 16178 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12805634, PMID:16510518, PMID:17651367, PMID:20736450, locus:2027012; locus_type=protein_coding
AT1G21530.2	chr1:007545151	0.0	C/7545151-7545900,7546037-7546936	AT1G21530.2 CDS AT1G21530 ID=AT1G21530.2; Parent=AT1G21530; Name=AT1G21530.2; Note=AMP-dependent synthetase and ligase family protein; conf_class=1; computational_description=AMP-dependent synthetase and ligase family protein%3B FUNCTIONS IN: catalytic activity%3B INVOLVED IN: metabolic process%3B CONTAINS InterPro DOMAIN/s: AMP-binding%2C conserved site (InterPro:IPR020845)%2C AMP-dependent synthetase/ligase (InterPro:IPR000873)%3B BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT1G21540.1)%3B Has 77218 Blast hits to 70321 proteins in 3603 species: Archae - 1163%3B Bacteria - 50491%3B Metazoa - 3382%3B Fungi - 3676%3B Plants - 2327%3B Viruses - 1%3B Other Eukaryotes - 16178 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12805634, PMID:16510518, PMID:17651367, PMID:20736450, locus:2027012; locus_type=protein_coding
AT1G21540.1	chr1:007548758	0.0	C/7548758-7549501,7549613-7550521	AT1G21540.1 CDS AT1G21540 ID=AT1G21540.1; Parent=AT1G21540; Name=AT1G21540.1; Note=AMP-dependent synthetase and ligase family protein; conf_class=1; computational_description=AMP-dependent synthetase and ligase family protein%3B FUNCTIONS IN: catalytic activity%3B INVOLVED IN: metabolic process%3B EXPRESSED IN: 10 plant structures%3B EXPRESSED DURING: 4 anthesis%2C C globular stage%2C F mature embryo stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%3B CONTAINS InterPro DOMAIN/s: EF-Hand 1%2C calcium-binding site (InterPro:IPR018247)%2C AMP-binding%2C conserved site (InterPro:IPR020845)%2C AMP-dependent synthetase/ligase (InterPro:IPR000873)%3B BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT1G21530.2)%3B Has 76629 Blast hits to 70171 proteins in 3593 species: Archae - 1132%3B Bacteria - 50179%3B Metazoa - 3309%3B Fungi - 3660%3B Plants - 2281%3B Viruses - 1%3B Other Eukaryotes - 16067 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12372144, PMID:12805634, PMID:17651367, PMID:18433503, PMID:18613973, PMID:20736450, locus:2027032; locus_type=protein_coding
AT1G21550.1	chr1:007553317	0.0	C/7553317-7553784	AT1G21550.1 CDS AT1G21550 ID=AT1G21550.1; Parent=AT1G21550; Name=AT1G21550.1; Note=Calcium-binding EF-hand family protein; conf_class=1; computational_description=Calcium-binding EF-hand family protein%3B FUNCTIONS IN: calcium ion binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 14 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: EF-Hand 1%2C calcium-binding site (InterPro:IPR018247)%2C EF-HAND 2 (InterPro:IPR018249)%2C EF-hand-like domain (InterPro:IPR011992)%2C Calcium-binding EF-hand (InterPro:IPR002048)%2C EF-hand (InterPro:IPR018248)%3B BEST Arabidopsis thaliana protein match is: calmodulin like 42 (TAIR:AT4G20780.1)%3B Has 8971 Blast hits to 8616 proteins in 1133 species: Archae - 0%3B Bacteria - 20%3B Metazoa - 2955%3B Fungi - 1509%3B Plants - 3114%3B Viruses - 0%3B Other Eukaryotes - 1373 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12372144, PMID:15235117, PMID:15720654, PMID:16023399, PMID:17545220, PMID:18156220, PMID:18218973, PMID:18252844, locus:2027047; locus_type=protein_coding
AT1G21560.2	chr1:007555208	0.0	W/7555208-7556032,7556132-7556348,7556540-7556628,7556721-7556789	AT1G21560.2 CDS AT1G21560 ID=AT1G21560.2; Parent=AT1G21560; Name=AT1G21560.2; Note=hypothetical protein; conf_class=4; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01170.1)%3B Has 76 Blast hits to 76 proteins in 15 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 3%3B Fungi - 2%3B Plants - 67%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:15937229, locus:2027062; locus_type=protein_coding
AT1G21560.3	chr1:007555208	0.0	W/7555208-7556032,7556132-7556348,7556540-7556628,7556721-7556789	AT1G21560.3 CDS AT1G21560 ID=AT1G21560.3; Parent=AT1G21560; Name=AT1G21560.3; Note=hypothetical protein; conf_class=4; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01170.1)%3B Has 76 Blast hits to 76 proteins in 15 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 3%3B Fungi - 2%3B Plants - 67%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:15937229, locus:2027062; locus_type=protein_coding
AT1G21560.4	chr1:007555208	0.0	W/7555208-7556032,7556132-7556404	AT1G21560.4 CDS AT1G21560 ID=AT1G21560.4; Parent=AT1G21560; Name=AT1G21560.4; Note=hypothetical protein; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01170.1)%3B Has 76 Blast hits to 76 proteins in 15 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 3%3B Fungi - 2%3B Plants - 67%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=PMID:15937229, locus:2027062; locus_type=protein_coding
AT1G21560.5	chr1:007555208	0.0	W/7555208-7556032,7556132-7556348,7556540-7556628,7556721-7556789	AT1G21560.5 CDS AT1G21560 ID=AT1G21560.5; Parent=AT1G21560; Name=AT1G21560.5; Note=hypothetical protein; Dbxref=PMID:15937229, locus:2027062; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01170.1)%3B Has 76 Blast hits to 76 proteins in 15 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 3%3B Fungi - 2%3B Plants - 67%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; locus_type=protein_coding
AT1G21560.6	chr1:007555208	0.0	W/7555208-7556032,7556132-7556348,7556540-7556628,7556721-7556789	AT1G21560.6 CDS AT1G21560 ID=AT1G21560.6; Parent=AT1G21560; Name=AT1G21560.6; Note=hypothetical protein; Dbxref=PMID:15937229, locus:2027062; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01170.1)%3B Has 76 Blast hits to 76 proteins in 15 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 3%3B Fungi - 2%3B Plants - 67%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; locus_type=protein_coding
AT1G21560.1	chr1:007555430	0.0	W/7555430-7556032,7556132-7556348,7556540-7556628,7556721-7556789	AT1G21560.1 CDS AT1G21560 ID=AT1G21560.1; Parent=AT1G21560; Name=AT1G21560.1; Note=hypothetical protein; conf_class=2; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01170.1)%3B Has 76 Blast hits to 76 proteins in 15 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 3%3B Fungi - 2%3B Plants - 67%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15937229, locus:2027062; locus_type=protein_coding
AT1G21580.1	chr1:007557822	0.0	C/7557822-7558211,7558475-7558578,7558644-7558686,7558761-7559031,7559115-7559205,7559439-7559513,7559649-7559745,7559850-7560000,7560093-7560288,7560573-7565655	AT1G21580.1 CDS AT1G21580 ID=AT1G21580.1; Parent=AT1G21580; Name=AT1G21580.1; Note=Zinc finger C-x8-C-x5-C-x3-H type family protein; conf_class=2; computational_description=Zinc finger C-x8-C-x5-C-x3-H type family protein%3B FUNCTIONS IN: zinc ion binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C CCCH-type (InterPro:IPR000571)%3B Has 6412 Blast hits to 4180 proteins in 441 species: Archae - 2%3B Bacteria - 615%3B Metazoa - 1993%3B Fungi - 936%3B Plants - 1540%3B Viruses - 149%3B Other Eukaryotes - 1177 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17586839, locus:2027077; locus_type=protein_coding
AT1G21580.4	chr1:007558445	0.0	C/7558445-7558578,7558644-7558686,7558761-7559031,7559115-7559205,7559439-7559513,7559649-7559745,7559850-7560000,7560093-7560288,7560573-7565655	AT1G21580.4 CDS AT1G21580 ID=AT1G21580.4; Parent=AT1G21580; Name=AT1G21580.4; Note=Zinc finger C-x8-C-x5-C-x3-H type family protein; computational_description=Zinc finger C-x8-C-x5-C-x3-H type family protein%3B FUNCTIONS IN: zinc ion binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C CCCH-type (InterPro:IPR000571)%3B Has 6412 Blast hits to 4180 proteins in 441 species: Archae - 2%3B Bacteria - 615%3B Metazoa - 1993%3B Fungi - 936%3B Plants - 1540%3B Viruses - 149%3B Other Eukaryotes - 1177 (source: NCBI BLink).; Dbxref=PMID:17586839, locus:2027077; locus_type=protein_coding
AT1G21580.3	chr1:007558501	0.0	C/7558501-7558578,7558644-7559031,7559115-7559205,7559439-7559513,7559649-7559745,7559850-7560000,7560093-7560288,7560573-7565655	AT1G21580.3 CDS AT1G21580 ID=AT1G21580.3; Parent=AT1G21580; Name=AT1G21580.3; Note=Zinc finger C-x8-C-x5-C-x3-H type family protein; computational_description=Zinc finger C-x8-C-x5-C-x3-H type family protein%3B FUNCTIONS IN: zinc ion binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C CCCH-type (InterPro:IPR000571)%3B Has 6412 Blast hits to 4180 proteins in 441 species: Archae - 2%3B Bacteria - 615%3B Metazoa - 1993%3B Fungi - 936%3B Plants - 1540%3B Viruses - 149%3B Other Eukaryotes - 1177 (source: NCBI BLink).; Dbxref=PMID:17586839, locus:2027077; locus_type=protein_coding
AT1G21580.6	chr1:007558501	0.0	C/7558501-7558578,7558644-7559031,7559115-7559205,7559439-7559513,7559649-7559745,7559850-7560000,7560093-7560288,7560573-7565655	AT1G21580.6 CDS AT1G21580 ID=AT1G21580.6; Parent=AT1G21580; Name=AT1G21580.6; Note=Zinc finger C-x8-C-x5-C-x3-H type family protein; computational_description=Zinc finger C-x8-C-x5-C-x3-H type family protein%3B FUNCTIONS IN: zinc ion binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C CCCH-type (InterPro:IPR000571)%3B Has 6412 Blast hits to 4180 proteins in 441 species: Archae - 2%3B Bacteria - 615%3B Metazoa - 1993%3B Fungi - 936%3B Plants - 1540%3B Viruses - 149%3B Other Eukaryotes - 1177 (source: NCBI BLink).; Dbxref=PMID:17586839, locus:2027077; locus_type=protein_coding
AT1G21580.7	chr1:007558501	0.0	C/7558501-7558686,7558761-7559031,7559115-7559205,7559439-7559513,7559649-7559745,7559850-7560000,7560093-7560288,7560573-7565655	AT1G21580.7 CDS AT1G21580 ID=AT1G21580.7; Parent=AT1G21580; Name=AT1G21580.7; Note=Zinc finger C-x8-C-x5-C-x3-H type family protein; computational_description=Zinc finger C-x8-C-x5-C-x3-H type family protein%3B FUNCTIONS IN: zinc ion binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C CCCH-type (InterPro:IPR000571)%3B Has 6412 Blast hits to 4180 proteins in 441 species: Archae - 2%3B Bacteria - 615%3B Metazoa - 1993%3B Fungi - 936%3B Plants - 1540%3B Viruses - 149%3B Other Eukaryotes - 1177 (source: NCBI BLink).; Dbxref=PMID:17586839, locus:2027077; locus_type=protein_coding
AT1G21580.8	chr1:007558501	0.0	C/7558501-7558686,7558761-7559031,7559115-7559205,7559439-7559513,7559649-7559745,7559850-7560000,7560093-7560288,7560573-7565655	AT1G21580.8 CDS AT1G21580 ID=AT1G21580.8; Parent=AT1G21580; Name=AT1G21580.8; Note=Zinc finger C-x8-C-x5-C-x3-H type family protein; computational_description=Zinc finger C-x8-C-x5-C-x3-H type family protein%3B FUNCTIONS IN: zinc ion binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C CCCH-type (InterPro:IPR000571)%3B Has 6412 Blast hits to 4180 proteins in 441 species: Archae - 2%3B Bacteria - 615%3B Metazoa - 1993%3B Fungi - 936%3B Plants - 1540%3B Viruses - 149%3B Other Eukaryotes - 1177 (source: NCBI BLink).; Dbxref=PMID:17586839, locus:2027077; locus_type=protein_coding
AT1G21580.2	chr1:007558593	0.0	C/7558593-7559031,7559115-7559205,7559439-7559513,7559649-7559745,7559850-7560000,7560093-7560288,7560573-7565655	AT1G21580.2 CDS AT1G21580 ID=AT1G21580.2; Parent=AT1G21580; Name=AT1G21580.2; Note=Zinc finger C-x8-C-x5-C-x3-H type family protein; computational_description=Zinc finger C-x8-C-x5-C-x3-H type family protein%3B FUNCTIONS IN: zinc ion binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C CCCH-type (InterPro:IPR000571)%3B Has 6412 Blast hits to 4180 proteins in 441 species: Archae - 2%3B Bacteria - 615%3B Metazoa - 1993%3B Fungi - 936%3B Plants - 1540%3B Viruses - 149%3B Other Eukaryotes - 1177 (source: NCBI BLink).; Dbxref=PMID:17586839, locus:2027077; locus_type=protein_coding
AT1G21580.5	chr1:007558593	0.0	C/7558593-7559031,7559115-7559205,7559439-7559513,7559649-7559745,7559850-7560000,7560093-7560288,7560573-7565655	AT1G21580.5 CDS AT1G21580 ID=AT1G21580.5; Parent=AT1G21580; Name=AT1G21580.5; Note=Zinc finger C-x8-C-x5-C-x3-H type family protein; computational_description=Zinc finger C-x8-C-x5-C-x3-H type family protein%3B FUNCTIONS IN: zinc ion binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C CCCH-type (InterPro:IPR000571)%3B Has 6412 Blast hits to 4180 proteins in 441 species: Archae - 2%3B Bacteria - 615%3B Metazoa - 1993%3B Fungi - 936%3B Plants - 1540%3B Viruses - 149%3B Other Eukaryotes - 1177 (source: NCBI BLink).; Dbxref=PMID:17586839, locus:2027077; locus_type=protein_coding
AT1G21580.9	chr1:007560565	0.0	C/7560565-7565655	AT1G21580.9 CDS AT1G21580 ID=AT1G21580.9; Parent=AT1G21580; Name=AT1G21580.9; Note=Zinc finger C-x8-C-x5-C-x3-H type family protein; Dbxref=PMID:17586839, locus:2027077; computational_description=Zinc finger C-x8-C-x5-C-x3-H type family protein%3B FUNCTIONS IN: zinc ion binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C CCCH-type (InterPro:IPR000571)%3B Has 6412 Blast hits to 4180 proteins in 441 species: Archae - 2%3B Bacteria - 615%3B Metazoa - 1993%3B Fungi - 936%3B Plants - 1540%3B Viruses - 149%3B Other Eukaryotes - 1177 (source: NCBI BLink).; locus_type=protein_coding
AT1G21590.1	chr1:007566613	0.0	C/7566613-7566858,7566963-7567112,7567203-7567350,7567441-7567520,7567601-7567764,7567844-7568092,7568197-7568931,7569032-7569281,7569360-7569457,7569544-7569694	AT1G21590.1 CDS AT1G21590 ID=AT1G21590.1; Parent=AT1G21590; Name=AT1G21590.1; Note=kinase with adenine nucleotide alpha hydrolases-like domain-containing protein; conf_class=2; computational_description=Protein kinase protein with adenine nucleotide alpha hydrolases-like domain%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%2C response to stress%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016)%2C Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (TAIR:AT1G77280.1)%3B Has 117833 Blast hits to 116515 proteins in 3694 species: Archae - 139%3B Bacteria - 13671%3B Metazoa - 42887%3B Fungi - 10197%3B Plants - 33102%3B Viruses - 429%3B Other Eukaryotes - 17408 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12644671, PMID:17149585, PMID:21477822, locus:2026957; locus_type=protein_coding
AT1G21590.2	chr1:007566613	0.0	C/7566613-7566858,7566963-7567112,7567203-7567350,7567441-7567520,7567601-7567764,7567844-7568092,7568197-7568931,7569032-7569281,7569360-7569488	AT1G21590.2 CDS AT1G21590 ID=AT1G21590.2; Parent=AT1G21590; Name=AT1G21590.2; Note=kinase with adenine nucleotide alpha hydrolases-like domain-containing protein; computational_description=Protein kinase protein with adenine nucleotide alpha hydrolases-like domain%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%2C response to stress%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016)%2C Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (TAIR:AT1G77280.1)%3B Has 117833 Blast hits to 116515 proteins in 3694 species: Archae - 139%3B Bacteria - 13671%3B Metazoa - 42887%3B Fungi - 10197%3B Plants - 33102%3B Viruses - 429%3B Other Eukaryotes - 17408 (source: NCBI BLink).; Dbxref=PMID:12644671, PMID:17149585, PMID:21477822, locus:2026957; locus_type=protein_coding
AT1G21600.1	chr1:007571514	0.0	C/7571514-7571630,7571742-7571831,7572122-7572241,7572476-7572580,7573128-7573196,7573297-7573782	AT1G21600.1 CDS AT1G21600 ID=AT1G21600.1; Parent=AT1G21600; Name=AT1G21600.1; Note=plastid transcriptionally active 6; curator_summary=Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression.; conf_class=2; symbol=PTAC6; full_name=plastid transcriptionally active 6; computational_description=plastid transcriptionally active 6 (PTAC6)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: positive regulation of transcription%2C DNA-dependent%2C transcription from plastid promoter%3B LOCATED IN: plastid chromosome%2C chloroplast%2C nucleoid%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B Has 36 Blast hits to 36 proteins in 8 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 36%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:16326926, PMID:21949211, PMID:24023856, PMID:24272250, locus:2026972; locus_type=protein_coding
AT1G21600.2	chr1:007571514	0.0	C/7571514-7571630,7571742-7571831,7572122-7572241,7572476-7572580,7573128-7573196,7573297-7573782	AT1G21600.2 CDS AT1G21600 ID=AT1G21600.2; Parent=AT1G21600; Name=AT1G21600.2; Note=plastid transcriptionally active 6; curator_summary=Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression.; conf_class=2; symbol=PTAC6; full_name=plastid transcriptionally active 6; computational_description=plastid transcriptionally active 6 (PTAC6)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: positive regulation of transcription%2C DNA-dependent%2C transcription from plastid promoter%3B LOCATED IN: plastid chromosome%2C chloroplast%2C nucleoid%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B Has 36 Blast hits to 36 proteins in 8 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 36%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:16326926, PMID:21949211, PMID:24023856, PMID:24272250, locus:2026972; locus_type=protein_coding
AT1G21610.1	chr1:007574104	0.0	W/7574104-7574343,7574956-7575042,7575193-7575285,7575359-7575435,7575831-7575957,7576039-7576380,7576585-7576666,7576752-7576864,7576949-7577035,7577221-7577346,7577628-7577756,7577849-7577896,7578052-7578162,7578251-7578643	AT1G21610.1 CDS AT1G21610 ID=AT1G21610.1; Parent=AT1G21610; Name=AT1G21610.1; Note=wound-responsive family protein; conf_class=2; Alias=UBN1, Ubinuclein 1; computational_description=wound-responsive family protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77310.1)%3B Has 560 Blast hits to 534 proteins in 143 species: Archae - 0%3B Bacteria - 34%3B Metazoa - 261%3B Fungi - 64%3B Plants - 78%3B Viruses - 0%3B Other Eukaryotes - 123 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, PMID:21477822, PMID:25086063, PMID:25600486, locus:2026987; locus_type=protein_coding
AT1G21610.2	chr1:007574104	0.0	W/7574104-7574343,7574956-7575042,7575193-7575285,7575359-7575435,7575831-7575957,7576039-7576380,7576585-7576666,7576752-7576864,7576952-7577035,7577221-7577346,7577628-7577756,7577849-7577896,7578052-7578162,7578251-7578643	AT1G21610.2 CDS AT1G21610 ID=AT1G21610.2; Parent=AT1G21610; Name=AT1G21610.2; Note=wound-responsive family protein; conf_class=2; Alias=UBN1, Ubinuclein 1; computational_description=wound-responsive family protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77310.1)%3B Has 560 Blast hits to 534 proteins in 143 species: Archae - 0%3B Bacteria - 34%3B Metazoa - 261%3B Fungi - 64%3B Plants - 78%3B Viruses - 0%3B Other Eukaryotes - 123 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, PMID:21477822, PMID:25086063, PMID:25600486, locus:2026987; locus_type=protein_coding
AT1G21610.3	chr1:007574104	0.0	W/7574104-7574343,7574956-7575042,7575193-7575285,7575359-7575435,7575831-7575957,7576039-7576380,7576585-7576666,7576752-7576864,7576949-7577035,7577221-7577346,7577628-7577756,7577849-7577896,7578052-7578165,7578251-7578643	AT1G21610.3 CDS AT1G21610 ID=AT1G21610.3; Parent=AT1G21610; Name=AT1G21610.3; Note=wound-responsive family protein; conf_class=2; Alias=UBN1, Ubinuclein 1; computational_description=wound-responsive family protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77310.1)%3B Has 560 Blast hits to 534 proteins in 143 species: Archae - 0%3B Bacteria - 34%3B Metazoa - 261%3B Fungi - 64%3B Plants - 78%3B Viruses - 0%3B Other Eukaryotes - 123 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, PMID:21477822, PMID:25086063, PMID:25600486, locus:2026987; locus_type=protein_coding
AT1G21610.4	chr1:007574104	0.0	W/7574104-7574343,7574956-7575042,7575193-7575285,7575359-7575435,7575831-7575957,7576039-7576380,7576585-7576666,7576752-7576864,7576952-7577035,7577221-7577490	AT1G21610.4 CDS AT1G21610 ID=AT1G21610.4; Parent=AT1G21610; Name=AT1G21610.4; Note=wound-responsive family protein; Alias=UBN1, Ubinuclein 1; computational_description=wound-responsive family protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77310.1)%3B Has 560 Blast hits to 534 proteins in 143 species: Archae - 0%3B Bacteria - 34%3B Metazoa - 261%3B Fungi - 64%3B Plants - 78%3B Viruses - 0%3B Other Eukaryotes - 123 (source: NCBI BLink).; Dbxref=PMID:18775970, PMID:21477822, PMID:25086063, PMID:25600486, locus:2026987; locus_type=protein_coding
AT1G21610.5	chr1:007574104	0.0	W/7574104-7574343,7574956-7575042,7575193-7575285,7575359-7575435,7575831-7575957,7576039-7576380,7576585-7576666,7576752-7576864,7576952-7577035,7577221-7577346,7577628-7577798	AT1G21610.5 CDS AT1G21610 ID=AT1G21610.5; Parent=AT1G21610; Name=AT1G21610.5; Note=wound-responsive family protein; Alias=UBN1, Ubinuclein 1; computational_description=wound-responsive family protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77310.1)%3B Has 560 Blast hits to 534 proteins in 143 species: Archae - 0%3B Bacteria - 34%3B Metazoa - 261%3B Fungi - 64%3B Plants - 78%3B Viruses - 0%3B Other Eukaryotes - 123 (source: NCBI BLink).; Dbxref=PMID:18775970, PMID:21477822, PMID:25086063, PMID:25600486, locus:2026987; locus_type=protein_coding
AT1G21610.6	chr1:007574104	0.0	W/7574104-7574343,7574956-7575042,7575193-7575285,7575359-7575435,7575831-7575957,7576039-7576380,7576585-7576666,7576752-7576864,7576952-7577035,7577221-7577346,7577628-7577798	AT1G21610.6 CDS AT1G21610 ID=AT1G21610.6; Parent=AT1G21610; Name=AT1G21610.6; Note=wound-responsive family protein; Alias=UBN1, Ubinuclein 1; computational_description=wound-responsive family protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77310.1)%3B Has 560 Blast hits to 534 proteins in 143 species: Archae - 0%3B Bacteria - 34%3B Metazoa - 261%3B Fungi - 64%3B Plants - 78%3B Viruses - 0%3B Other Eukaryotes - 123 (source: NCBI BLink).; Dbxref=PMID:18775970, PMID:21477822, PMID:25086063, PMID:25600486, locus:2026987; locus_type=protein_coding
AT1G21620.1	chr1:007579129	0.0	W/7579129-7579336,7579380-7579691,7579765-7580171	AT1G21620.1 CDS AT1G21620 ID=AT1G21620.1; Parent=AT1G21620; Name=AT1G21620.1; Note=pumilio 20; curator_summary=Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.; conf_class=8; symbol=PUM20; Alias=APUM20, pumilio 20; full_name=pumilio 20; computational_description=pumilio 20 (PUM20)%3B FUNCTIONS IN: RNA binding%2C binding%3B CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313)%2C Armadillo-like helical (InterPro:IPR011989)%2C Armadillo-type fold (InterPro:IPR016024)%3B BEST Arabidopsis thaliana protein match is: pumilio 18 (TAIR:AT5G60110.1)%3B Has 2073 Blast hits to 1204 proteins in 222 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 801%3B Fungi - 431%3B Plants - 579%3B Viruses - 0%3B Other Eukaryotes - 262 (source: NCBI BLink).; conf_rating=*; Dbxref=PMID:19682068, PMID:20214804, locus:2027007; locus_type=protein_coding
AT1G21630.1	chr1:007581457	0.0	W/7581457-7581603,7582231-7583461,7583756-7583974,7584053-7584276,7584695-7584769,7585019-7585090,7585176-7585274,7585378-7585449,7585521-7585635,7585908-7585976,7586163-7586463,7586629-7586740,7586876-7587796	AT1G21630.1 CDS AT1G21630 ID=AT1G21630.1; Parent=AT1G21630; Name=AT1G21630.1; Note=Calcium-binding EF hand family protein; conf_class=2; computational_description=Calcium-binding EF hand family protein%3B FUNCTIONS IN: calcium ion binding%3B LOCATED IN: cytosol%2C plasma membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249)%2C EPS15 homology (EH) (InterPro:IPR000261)%2C EF-hand-like domain (InterPro:IPR011992)%2C Calcium-binding EF-hand (InterPro:IPR002048)%3B BEST Arabidopsis thaliana protein match is: Calcium-binding EF hand family protein (TAIR:AT1G20760.1)%3B Has 21780 Blast hits to 9779 proteins in 834 species: Archae - 101%3B Bacteria - 6804%3B Metazoa - 6519%3B Fungi - 2817%3B Plants - 623%3B Viruses - 89%3B Other Eukaryotes - 4827 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12372144, PMID:16911220, PMID:18433157, PMID:18775970, PMID:20687615, locus:2036937; locus_type=protein_coding
AT1G21630.2	chr1:007581457	0.0	W/7581457-7581603,7582231-7583461,7583756-7583974,7584053-7584276,7584341-7584430,7584695-7584769,7585019-7585090,7585176-7585274,7585378-7585449,7585524-7585635,7585908-7585976,7586163-7586463,7586629-7586740,7586876-7587796	AT1G21630.2 CDS AT1G21630 ID=AT1G21630.2; Parent=AT1G21630; Name=AT1G21630.2; Note=Calcium-binding EF hand family protein; conf_class=6; computational_description=Calcium-binding EF hand family protein%3B FUNCTIONS IN: calcium ion binding%3B LOCATED IN: cytosol%2C plasma membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249)%2C EPS15 homology (EH) (InterPro:IPR000261)%2C EF-hand-like domain (InterPro:IPR011992)%2C Calcium-binding EF-hand (InterPro:IPR002048)%3B BEST Arabidopsis thaliana protein match is: Calcium-binding EF hand family protein (TAIR:AT1G20760.1)%3B Has 21780 Blast hits to 9779 proteins in 834 species: Archae - 101%3B Bacteria - 6804%3B Metazoa - 6519%3B Fungi - 2817%3B Plants - 623%3B Viruses - 89%3B Other Eukaryotes - 4827 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:12372144, PMID:16911220, PMID:18433157, PMID:18775970, PMID:20687615, locus:2036937; locus_type=protein_coding
AT1G21630.3	chr1:007581457	0.0	W/7581457-7581603,7582231-7583461,7583756-7583974,7584053-7584276,7584695-7584769,7585019-7585090,7585176-7585274,7585378-7585449,7585521-7585635,7585908-7585976,7586163-7586463,7586629-7586740,7586876-7587170,7587237-7587796	AT1G21630.3 CDS AT1G21630 ID=AT1G21630.3; Parent=AT1G21630; Name=AT1G21630.3; Note=Calcium-binding EF hand family protein; computational_description=Calcium-binding EF hand family protein%3B FUNCTIONS IN: calcium ion binding%3B LOCATED IN: cytosol%2C plasma membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249)%2C EPS15 homology (EH) (InterPro:IPR000261)%2C EF-hand-like domain (InterPro:IPR011992)%2C Calcium-binding EF-hand (InterPro:IPR002048)%3B BEST Arabidopsis thaliana protein match is: Calcium-binding EF hand family protein (TAIR:AT1G20760.1)%3B Has 21780 Blast hits to 9779 proteins in 834 species: Archae - 101%3B Bacteria - 6804%3B Metazoa - 6519%3B Fungi - 2817%3B Plants - 623%3B Viruses - 89%3B Other Eukaryotes - 4827 (source: NCBI BLink).; Dbxref=PMID:12372144, PMID:16911220, PMID:18433157, PMID:18775970, PMID:20687615, locus:2036937; locus_type=protein_coding
AT1G21630.4	chr1:007581457	0.0	W/7581457-7581603,7582231-7583461,7583756-7583974,7584053-7584276,7584341-7584430,7584695-7584769,7585019-7585090,7585176-7585274,7585378-7585449,7585524-7585635,7585908-7585976,7586163-7586463,7586629-7586740,7586876-7587170,7587237-7587796	AT1G21630.4 CDS AT1G21630 ID=AT1G21630.4; Parent=AT1G21630; Name=AT1G21630.4; Note=Calcium-binding EF hand family protein; computational_description=Calcium-binding EF hand family protein%3B FUNCTIONS IN: calcium ion binding%3B LOCATED IN: cytosol%2C plasma membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249)%2C EPS15 homology (EH) (InterPro:IPR000261)%2C EF-hand-like domain (InterPro:IPR011992)%2C Calcium-binding EF-hand (InterPro:IPR002048)%3B BEST Arabidopsis thaliana protein match is: Calcium-binding EF hand family protein (TAIR:AT1G20760.1)%3B Has 21780 Blast hits to 9779 proteins in 834 species: Archae - 101%3B Bacteria - 6804%3B Metazoa - 6519%3B Fungi - 2817%3B Plants - 623%3B Viruses - 89%3B Other Eukaryotes - 4827 (source: NCBI BLink).; Dbxref=PMID:12372144, PMID:16911220, PMID:18433157, PMID:18775970, PMID:20687615, locus:2036937; locus_type=protein_coding
AT1G21640.1	chr1:007588726	0.0	W/7588726-7588956,7589170-7591026,7591142-7591263,7591353-7591494,7591594-7591818,7591967-7592041,7592187-7592288,7592466-7592669	AT1G21640.1 CDS AT1G21640 ID=AT1G21640.1; Parent=AT1G21640; Name=AT1G21640.1; Note=NAD kinase 2; curator_summary=Encodes a protein with NAD kinase activity. The protein was also shown to bind calmodulin.; conf_class=2; symbol=NADK2; Alias=ATNADK2, NAD KINASE 2; full_name=NAD kinase 2; computational_description=NAD kinase 2 (NADK2)%3B FUNCTIONS IN: NAD+ kinase activity%2C calmodulin binding%3B INVOLVED IN: pyridine nucleotide biosynthetic process%2C metabolic process%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: ATP-NAD kinase%2C PpnK-type%2C alpha/beta (InterPro:IPR017438)%2C ATP-NAD kinase%2C PpnK-type (InterPro:IPR016064)%2C ATP-NAD/AcoX kinase (InterPro:IPR002504)%2C ATP-NAD kinase%2C PpnK-type%2C all-beta (InterPro:IPR017437)%3B BEST Arabidopsis thaliana protein match is: NAD kinase 1 (TAIR:AT3G21070.2)%3B Has 8697 Blast hits to 8591 proteins in 2758 species: Archae - 277%3B Bacteria - 5531%3B Metazoa - 247%3B Fungi - 416%3B Plants - 137%3B Viruses - 0%3B Other Eukaryotes - 2089 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15247403, PMID:15347288, PMID:16244906, PMID:16856986, PMID:17082216, PMID:19587098, PMID:19921251, PMID:20154096, PMID:20736450, PMID:21477822, locus:2036952; locus_type=protein_coding
AT1G21640.2	chr1:007588726	0.0	W/7588726-7588956,7589170-7591026,7591100-7591263,7591353-7591494,7591594-7591818,7591967-7592041,7592187-7592288,7592466-7592669	AT1G21640.2 CDS AT1G21640 ID=AT1G21640.2; Parent=AT1G21640; Name=AT1G21640.2; Note=NAD kinase 2; curator_summary=Encodes a protein with NAD kinase activity. The protein was also shown to bind calmodulin.; conf_class=4; symbol=NADK2; Alias=ATNADK2, NAD KINASE 2; full_name=NAD kinase 2; computational_description=NAD kinase 2 (NADK2)%3B FUNCTIONS IN: NAD+ kinase activity%2C calmodulin binding%3B INVOLVED IN: pyridine nucleotide biosynthetic process%2C metabolic process%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: ATP-NAD kinase%2C PpnK-type%2C alpha/beta (InterPro:IPR017438)%2C ATP-NAD kinase%2C PpnK-type (InterPro:IPR016064)%2C ATP-NAD/AcoX kinase (InterPro:IPR002504)%2C ATP-NAD kinase%2C PpnK-type%2C all-beta (InterPro:IPR017437)%3B BEST Arabidopsis thaliana protein match is: NAD kinase 1 (TAIR:AT3G21070.2)%3B Has 8697 Blast hits to 8591 proteins in 2758 species: Archae - 277%3B Bacteria - 5531%3B Metazoa - 247%3B Fungi - 416%3B Plants - 137%3B Viruses - 0%3B Other Eukaryotes - 2089 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:15247403, PMID:15347288, PMID:16244906, PMID:16856986, PMID:17082216, PMID:19587098, PMID:19921251, PMID:20154096, PMID:20736450, PMID:21477822, locus:2036952; locus_type=protein_coding
AT1G21650.1	chr1:007592891	0.0	C/7592891-7593055,7593139-7593213,7593294-7593417,7593517-7593685,7593811-7593880,7593988-7594042,7594149-7594228,7594566-7594646,7594757-7594874,7595055-7595110,7595438-7595727,7595838-7595901,7596034-7596129,7596312-7596425,7596515-7596593,7596887-7596972,7597076-7597171,7597283-7597375,7597460-7597543,7597701-7597791,7598248-7598363,7598467-7598532,7598705-7598792,7598856-7598920,7599008-7599073,7599165-7599256,7599433-7599553,7599665-7599729,7599872-7599941,7600030-7600164,7600405-7600590	AT1G21650.1 CDS AT1G21650 ID=AT1G21650.1; Parent=AT1G21650; Name=AT1G21650.1; Note=Preprotein translocase SecA family protein; curator_summary=Encodes a component of the thylakoid-localized Sec system involved in the translocation of cytoplasmic proteins into plastid. Loss-of-function mutations result in arrest at the globular stage and embryo lethality.; conf_class=3; symbol=SECA2; computational_description=Preprotein translocase SecA family protein%3B FUNCTIONS IN: ATPase activity%2C P-P-bond-hydrolysis-driven protein transmembrane transporter activity%2C ATP binding%3B INVOLVED IN: intracellular protein transport%2C protein targeting%2C protein transport by the Sec complex%2C protein import%3B LOCATED IN: internal side of plasma membrane%2C chloroplast%2C membrane%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: SecA%2C preprotein translocase (InterPro:IPR022491)%2C SecA motor DEAD (InterPro:IPR014018)%2C SecA Wing/Scaffold (InterPro:IPR011116)%2C SecA preprotein%2C cross-linking domain (InterPro:IPR011130)%2C SecA conserved site (InterPro:IPR020937)%2C SecA DEAD-like (InterPro:IPR011115)%2C SecA protein (InterPro:IPR000185)%3B BEST Arabidopsis thaliana protein match is: Albino or Glassy Yellow 1 (TAIR:AT4G01800.1)%3B Has 21976 Blast hits to 13078 proteins in 2820 species: Archae - 0%3B Bacteria - 13647%3B Metazoa - 53%3B Fungi - 1%3B Plants - 97%3B Viruses - 0%3B Other Eukaryotes - 8178 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11983057, PMID:14576160, PMID:16979780, PMID:21051552, PMID:20736450, locus:2036922; locus_type=protein_coding
AT1G21650.2	chr1:007592891	0.0	C/7592891-7593055,7593139-7593213,7593294-7593417,7593517-7593706,7593811-7593880,7593988-7594042,7594149-7594228,7594566-7594646,7594757-7594874,7595055-7595110,7595438-7595727,7595838-7595901,7596034-7596129,7596312-7596425,7596515-7596593,7596887-7596972,7597076-7597171,7597283-7597375,7597460-7597543,7597701-7597791,7598248-7598363,7598467-7598532,7598705-7598792,7598856-7598920,7599008-7599073,7599165-7599256,7599433-7599553,7599665-7599729,7599872-7599941,7600030-7600164,7600405-7600590	AT1G21650.2 CDS AT1G21650 ID=AT1G21650.2; Parent=AT1G21650; Name=AT1G21650.2; Note=Preprotein translocase SecA family protein; curator_summary=Encodes a component of the thylakoid-localized Sec system involved in the translocation of cytoplasmic proteins into plastid. Loss-of-function mutations result in arrest at the globular stage and embryo lethality.; conf_class=3; symbol=SECA2; computational_description=Preprotein translocase SecA family protein%3B FUNCTIONS IN: ATPase activity%2C P-P-bond-hydrolysis-driven protein transmembrane transporter activity%2C ATP binding%3B INVOLVED IN: intracellular protein transport%2C protein targeting%2C protein transport by the Sec complex%2C protein import%3B LOCATED IN: internal side of plasma membrane%2C chloroplast%2C membrane%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: SecA%2C preprotein translocase (InterPro:IPR022491)%2C SecA motor DEAD (InterPro:IPR014018)%2C SecA Wing/Scaffold (InterPro:IPR011116)%2C SecA preprotein%2C cross-linking domain (InterPro:IPR011130)%2C SecA conserved site (InterPro:IPR020937)%2C SecA DEAD-like (InterPro:IPR011115)%2C SecA protein (InterPro:IPR000185)%3B BEST Arabidopsis thaliana protein match is: Albino or Glassy Yellow 1 (TAIR:AT4G01800.1)%3B Has 21976 Blast hits to 13078 proteins in 2820 species: Archae - 0%3B Bacteria - 13647%3B Metazoa - 53%3B Fungi - 1%3B Plants - 97%3B Viruses - 0%3B Other Eukaryotes - 8178 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11983057, PMID:14576160, PMID:16979780, PMID:21051552, PMID:20736450, locus:2036922; locus_type=protein_coding
AT1G21650.3	chr1:007592891	0.0	C/7592891-7593055,7593139-7593213,7593294-7593417,7593517-7593706,7593811-7593880,7593988-7594042,7594149-7594228,7594566-7594646,7594757-7594874,7595055-7595110,7595438-7595727,7595838-7595901,7596034-7596129,7596312-7596425,7596515-7596593,7596887-7596972,7597076-7597171,7597283-7597375,7597460-7597543,7597701-7597791,7598248-7598363,7598467-7598532,7598705-7598792,7598856-7598920,7599008-7599073,7599165-7599256,7599433-7599553,7599665-7599729,7599872-7599941,7600018-7600164,7601186-7601314,7601450-7601569,7601665-7601901,7601983-7602255,7602386-7602441,7602553-7604152	AT1G21650.3 CDS AT1G21650 ID=AT1G21650.3; Parent=AT1G21650; Name=AT1G21650.3; Note=Preprotein translocase SecA family protein; curator_summary=Encodes a component of the thylakoid-localized Sec system involved in the translocation of cytoplasmic proteins into plastid. Loss-of-function mutations result in arrest at the globular stage and embryo lethality.; conf_class=6; symbol=SECA2; computational_description=Preprotein translocase SecA family protein%3B FUNCTIONS IN: ATPase activity%2C P-P-bond-hydrolysis-driven protein transmembrane transporter activity%2C ATP binding%3B INVOLVED IN: intracellular protein transport%2C protein targeting%2C protein transport by the Sec complex%2C protein import%3B LOCATED IN: internal side of plasma membrane%2C chloroplast%2C membrane%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: SecA%2C preprotein translocase (InterPro:IPR022491)%2C SecA motor DEAD (InterPro:IPR014018)%2C SecA Wing/Scaffold (InterPro:IPR011116)%2C SecA preprotein%2C cross-linking domain (InterPro:IPR011130)%2C SecA conserved site (InterPro:IPR020937)%2C SecA DEAD-like (InterPro:IPR011115)%2C SecA protein (InterPro:IPR000185)%3B BEST Arabidopsis thaliana protein match is: Albino or Glassy Yellow 1 (TAIR:AT4G01800.1)%3B Has 21976 Blast hits to 13078 proteins in 2820 species: Archae - 0%3B Bacteria - 13647%3B Metazoa - 53%3B Fungi - 1%3B Plants - 97%3B Viruses - 0%3B Other Eukaryotes - 8178 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:11983057, PMID:14576160, PMID:16979780, PMID:21051552, PMID:20736450, locus:2036922; locus_type=protein_coding
AT1G21651.1	chr1:007601061	0.0	C/7601061-7601081,7601186-7601314,7601450-7601569,7601665-7601901,7601983-7602255,7602386-7602441,7602553-7604152	AT1G21651.1 CDS AT1G21651 ID=AT1G21651.1; Parent=AT1G21651; Name=AT1G21651.1; Note=zinc ion binding protein; conf_class=2; computational_description=zinc ion binding%3B FUNCTIONS IN: zinc ion binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C WD40 repeat (InterPro:IPR001680)%2C G-protein beta WD-40 repeat%2C region (InterPro:IPR020472)%2C WD40 repeat-like-containing domain (InterPro:IPR011046)%2C WD40-repeat-containing domain (InterPro:IPR017986)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C WD40 repeat%2C subgroup (InterPro:IPR019781)%3B BEST Arabidopsis thaliana protein match is: Preprotein translocase SecA family protein (TAIR:AT1G21650.3)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:4515102561; locus_type=protein_coding
AT1G05683.1	chr1:007604410	0.0	W/7604410-7604655	AT1G05683.1 lnc_RNA AT1G05683 ID=AT1G05683.1; Parent=AT1G05683; Name=AT1G05683.1; locus_type=long_noncoding_rna
AT1G21660.1	chr1:007605924	0.0	W/7605924-7606504,7606707-7606903,7606998-7607206,7607307-7607421,7607502-7607599,7607921-7607986,7608195-7608284,7608386-7608562,7608797-7608835	AT1G21660.1 CDS AT1G21660 ID=AT1G21660.1; Parent=AT1G21660; Name=AT1G21660.1; Note=Chaperone DnaJ-domain superfamily protein; conf_class=1; computational_description=Chaperone DnaJ-domain superfamily protein%3B FUNCTIONS IN: heat shock protein binding%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Heat shock protein DnaJ%2C N-terminal (InterPro:IPR001623)%3B BEST Arabidopsis thaliana protein match is: Chaperone DnaJ-domain superfamily protein (TAIR:AT4G12770.1)%3B Has 3482 Blast hits to 1316 proteins in 282 species: Archae - 0%3B Bacteria - 662%3B Metazoa - 522%3B Fungi - 399%3B Plants - 281%3B Viruses - 8%3B Other Eukaryotes - 1610 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14576160, PMID:14973164, PMID:16113208, PMID:18775970, locus:2036967; locus_type=protein_coding
AT1G21670.1	chr1:007610409	0.0	W/7610409-7612520	AT1G21670.1 CDS AT1G21670 ID=AT1G21670.1; Parent=AT1G21670; Name=AT1G21670.1; Note=DPP6 amino-terminal domain protein; conf_class=1; computational_description=LOCATED IN: cell wall%2C plant-type cell wall%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: WD40-like Beta Propeller (InterPro:IPR011659)%2C Six-bladed beta-propeller%2C TolB-like (InterPro:IPR011042)%3B BEST Arabidopsis thaliana protein match is: DPP6 N-terminal domain-like protein (TAIR:AT1G21680.1)%3B Has 8461 Blast hits to 5060 proteins in 1257 species: Archae - 79%3B Bacteria - 5567%3B Metazoa - 37%3B Fungi - 70%3B Plants - 117%3B Viruses - 0%3B Other Eukaryotes - 2591 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14576160, PMID:14617064, PMID:15593128, PMID:15769804, PMID:15824099, PMID:15894741, PMID:16299181, PMID:16630346, PMID:20736450, locus:2036982; locus_type=protein_coding
AT1G21680.1	chr1:007613028	0.0	W/7613028-7615148	AT1G21680.1 CDS AT1G21680 ID=AT1G21680.1; Parent=AT1G21680; Name=AT1G21680.1; Note=DPP6 N-terminal domain-like protein; conf_class=1; computational_description=DPP6 N-terminal domain-like protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%2C vacuole%2C plant-type cell wall%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: WD40-like Beta Propeller (InterPro:IPR011659)%2C Six-bladed beta-propeller%2C TolB-like (InterPro:IPR011042)%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21670.1)%3B Has 9463 Blast hits to 5353 proteins in 1263 species: Archae - 75%3B Bacteria - 6165%3B Metazoa - 47%3B Fungi - 60%3B Plants - 122%3B Viruses - 0%3B Other Eukaryotes - 2994 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15824099, PMID:16920880, PMID:18650403, PMID:20736450, locus:2036916; locus_type=protein_coding
AT1G21690.1	chr1:007615675	0.0	W/7615675-7615718,7615805-7615883,7616028-7616107,7616604-7616726,7616816-7616885,7616967-7617040,7617242-7617362,7617441-7617503,7617589-7617648,7617748-7617873,7617957-7618043,7618270-7618362	AT1G21690.1 CDS AT1G21690 ID=AT1G21690.1; Parent=AT1G21690; Name=AT1G21690.1; Note=ATPase family associated with various cellular activities (AAA); conf_class=2; symbol=EMB1968; Alias=RFC4, replication factor C 4; full_name=embryo defective 1968; computational_description=embryo defective 1968 (EMB1968)%3B FUNCTIONS IN: in 6 functions%3B INVOLVED IN: embryo development ending in seed dormancy%3B LOCATED IN: DNA replication factor C complex%2C nucleolus%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C ATPase%2C AAA-type%2C core (InterPro:IPR003959)%2C Replication factor C (InterPro:IPR013748)%2C DNA polymerase III%2C clamp loader complex%2C gamma/delta/delta subunit%2C C-terminal (InterPro:IPR008921)%3B BEST Arabidopsis thaliana protein match is: replication factor C 2 (TAIR:AT1G63160.1)%3B Has 18128 Blast hits to 18077 proteins in 2897 species: Archae - 631%3B Bacteria - 10254%3B Metazoa - 847%3B Fungi - 935%3B Plants - 386%3B Viruses - 88%3B Other Eukaryotes - 4987 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12609051, PMID:12953064, PMID:16045477, PMID:17556508, PMID:17675552, PMID:18775970, PMID:20639449, locus:2036927; locus_type=protein_coding
AT1G21690.2	chr1:007615675	0.0	W/7615675-7615718,7615805-7615847,7616028-7616107,7616604-7616726,7616816-7616885,7616967-7617040,7617242-7617362,7617441-7617503,7617589-7617648,7617748-7617873,7617957-7618043,7618270-7618362	AT1G21690.2 CDS AT1G21690 ID=AT1G21690.2; Parent=AT1G21690; Name=AT1G21690.2; Note=ATPase family associated with various cellular activities (AAA); conf_class=3; symbol=EMB1968; Alias=RFC4, replication factor C 4; full_name=embryo defective 1968; computational_description=embryo defective 1968 (EMB1968)%3B FUNCTIONS IN: in 6 functions%3B INVOLVED IN: embryo development ending in seed dormancy%3B LOCATED IN: DNA replication factor C complex%2C nucleolus%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C ATPase%2C AAA-type%2C core (InterPro:IPR003959)%2C Replication factor C (InterPro:IPR013748)%2C DNA polymerase III%2C clamp loader complex%2C gamma/delta/delta subunit%2C C-terminal (InterPro:IPR008921)%3B BEST Arabidopsis thaliana protein match is: replication factor C 2 (TAIR:AT1G63160.1)%3B Has 18128 Blast hits to 18077 proteins in 2897 species: Archae - 631%3B Bacteria - 10254%3B Metazoa - 847%3B Fungi - 935%3B Plants - 386%3B Viruses - 88%3B Other Eukaryotes - 4987 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12609051, PMID:12953064, PMID:16045477, PMID:17556508, PMID:17675552, PMID:18775970, PMID:20639449, locus:2036927; locus_type=protein_coding
AT1G21690.3	chr1:007615675	0.0	W/7615675-7615718,7615805-7615883,7616028-7616107,7616604-7616726,7616816-7616885,7616967-7617040,7617242-7617362,7617441-7617503,7617589-7617648,7617748-7617873,7617957-7618043,7618323-7618421	AT1G21690.3 CDS AT1G21690 ID=AT1G21690.3; Parent=AT1G21690; Name=AT1G21690.3; Note=ATPase family associated with various cellular activities (AAA); conf_class=4; symbol=EMB1968; Alias=RFC4, replication factor C 4; full_name=embryo defective 1968; computational_description=embryo defective 1968 (EMB1968)%3B FUNCTIONS IN: in 6 functions%3B INVOLVED IN: embryo development ending in seed dormancy%3B LOCATED IN: DNA replication factor C complex%2C nucleolus%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C ATPase%2C AAA-type%2C core (InterPro:IPR003959)%2C Replication factor C (InterPro:IPR013748)%2C DNA polymerase III%2C clamp loader complex%2C gamma/delta/delta subunit%2C C-terminal (InterPro:IPR008921)%3B BEST Arabidopsis thaliana protein match is: replication factor C 2 (TAIR:AT1G63160.1)%3B Has 18128 Blast hits to 18077 proteins in 2897 species: Archae - 631%3B Bacteria - 10254%3B Metazoa - 847%3B Fungi - 935%3B Plants - 386%3B Viruses - 88%3B Other Eukaryotes - 4987 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:12609051, PMID:12953064, PMID:16045477, PMID:17556508, PMID:17675552, PMID:18775970, PMID:20639449, locus:2036927; locus_type=protein_coding
AT1G21690.4	chr1:007615675	0.0	W/7615675-7615718,7615805-7615883,7616028-7616107,7616625-7616726,7616816-7616885,7616967-7617040,7617242-7617362,7617441-7617503,7617589-7617648,7617748-7617873,7617957-7618043,7618270-7618362	AT1G21690.4 CDS AT1G21690 ID=AT1G21690.4; Parent=AT1G21690; Name=AT1G21690.4; Note=ATPase family associated with various cellular activities (AAA); conf_class=2; symbol=EMB1968; Alias=RFC4, replication factor C 4; full_name=embryo defective 1968; computational_description=embryo defective 1968 (EMB1968)%3B FUNCTIONS IN: in 6 functions%3B INVOLVED IN: embryo development ending in seed dormancy%3B LOCATED IN: DNA replication factor C complex%2C nucleolus%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C ATPase%2C AAA-type%2C core (InterPro:IPR003959)%2C Replication factor C (InterPro:IPR013748)%2C DNA polymerase III%2C clamp loader complex%2C gamma/delta/delta subunit%2C C-terminal (InterPro:IPR008921)%3B BEST Arabidopsis thaliana protein match is: replication factor C 2 (TAIR:AT1G63160.1)%3B Has 18128 Blast hits to 18077 proteins in 2897 species: Archae - 631%3B Bacteria - 10254%3B Metazoa - 847%3B Fungi - 935%3B Plants - 386%3B Viruses - 88%3B Other Eukaryotes - 4987 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12609051, PMID:12953064, PMID:16045477, PMID:17556508, PMID:17675552, PMID:18775970, PMID:20639449, locus:2036927; locus_type=protein_coding
AT1G21695.1	chr1:007619132	0.0	W/7619132-7619785	AT1G21695.1 CDS AT1G21695 ID=AT1G21695.1; Parent=AT1G21695; Name=AT1G21695.1; Note=hydroxyproline-rich glycoprotein family protein; conf_class=1; computational_description=hydroxyproline-rich glycoprotein family protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77400.1)%3B Has 5872 Blast hits to 1129 proteins in 201 species: Archae - 0%3B Bacteria - 86%3B Metazoa - 581%3B Fungi - 299%3B Plants - 356%3B Viruses - 57%3B Other Eukaryotes - 4493 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:504956213; locus_type=protein_coding
AT1G21700.1	chr1:007620156	0.0	C/7620156-7620731,7620828-7621003,7621105-7621172,7621268-7621353,7621549-7621622,7621715-7622072,7622229-7622767,7623294-7623824,7623963-7623978	AT1G21700.1 CDS AT1G21700 ID=AT1G21700.1; Parent=AT1G21700; Name=AT1G21700.1; Note=SWITCH/sucrose nonfermenting 3C; curator_summary=a member of the Arabidopsis SWI3 gene family. Protein physically interacts with ATSWI3B and ATSWI3A%2C the other two members of the SWI3 family. Homologous to yeast SWI3 %26 RSC8%2C components of the SWI/SNF and RSC chromatin remodeling complexes. Referred to as CHB3 in Zhou et al (2003).; conf_class=2; symbol=SWI3C; Alias=ATSWI3C, SWITCH/sucrose nonfermenting 3C, CHB4; full_name=SWITCH/sucrose nonfermenting 3C; computational_description=SWITCH/sucrose nonfermenting 3C (SWI3C)%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: chromatin remodeling%3B LOCATED IN: SWI/SNF complex%2C chromatin remodeling complex%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C SWIRM (InterPro:IPR007526)%2C SANT%2C eukarya (InterPro:IPR017884)%3B BEST Arabidopsis thaliana protein match is: DNA-binding family protein (TAIR:AT4G34430.3)%3B Has 4703 Blast hits to 3623 proteins in 273 species: Archae - 0%3B Bacteria - 43%3B Metazoa - 1892%3B Fungi - 779%3B Plants - 380%3B Viruses - 2%3B Other Eukaryotes - 1607 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12140326, PMID:14682613, PMID:15371304, PMID:16055636, PMID:16489130, PMID:16845477, PMID:17293567, PMID:18508955, PMID:18775970, PMID:19301030, PMID:23893173, PMID:24443518, locus:2036942; locus_type=protein_coding
AT1G21710.1	chr1:007624439	0.0	W/7624439-7625082,7625300-7625510,7625627-7625869	AT1G21710.1 CDS AT1G21710 ID=AT1G21710.1; Parent=AT1G21710; Name=AT1G21710.1; Note=8-oxoguanine-DNA glycosylase 1; curator_summary=Encodes 8-oxoguanine-DNA glycosylase. DNA repair enzyme.; conf_class=2; symbol=OGG1; Alias=ATOGG1, ARABIDOPSIS 8-OXOGUANINE-DNA GLYCOSYLASE 1; full_name=8-oxoguanine-DNA glycosylase 1; computational_description=8-oxoguanine-DNA glycosylase 1 (OGG1)%3B FUNCTIONS IN: oxidized purine base lesion DNA N-glycosylase activity%3B INVOLVED IN: DNA repair%2C base-excision repair%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257)%2C Helix-hairpin-helix DNA-binding motif%2C class 1 (InterPro:IPR003583)%2C Transcription factor TFIID%2C C-terminal/DNA glycosylase%2C N-terminal (InterPro:IPR012294)%2C 8-oxoguanine DNA glycosylase%2C N-terminal (InterPro:IPR012904)%2C HhH-GPD domain (InterPro:IPR003265)%3B Has 951 Blast hits to 936 proteins in 417 species: Archae - 106%3B Bacteria - 332%3B Metazoa - 176%3B Fungi - 163%3B Plants - 46%3B Viruses - 0%3B Other Eukaryotes - 128 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:11785940, PMID:11361340, PMID:12627976, PMID:14576160, PMID:15937229, PMID:17804481, PMID:18650403, PMID:20736450, PMID:22473985, locus:2036957; locus_type=protein_coding
AT1G21720.1	chr1:007626394	0.0	W/7626394-7626399,7626519-7626700,7626810-7626917,7627079-7627168,7627427-7627511,7627838-7627932,7628022-7628070	AT1G21720.1 CDS AT1G21720 ID=AT1G21720.1; Parent=AT1G21720; Name=AT1G21720.1; Note=proteasome beta subunit C1; curator_summary=20S proteasome beta subunit PBC1 truncated protein (PBC1); conf_class=2; symbol=PBC1; full_name=proteasome beta subunit C1; computational_description=proteasome beta subunit C1 (PBC1)%3B FUNCTIONS IN: peptidase activity%2C endopeptidase activity%2C threonine-type endopeptidase activity%3B INVOLVED IN: ubiquitin-dependent protein catabolic process%3B LOCATED IN: proteasome core complex%2C proteasome complex%2C plasma membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Proteasome%2C beta-type subunit%2C conserved site (InterPro:IPR016050)%2C Proteasome%2C subunit alpha/beta (InterPro:IPR001353)%3B BEST Arabidopsis thaliana protein match is: 20S proteasome beta subunit C2 (TAIR:AT1G77440.2)%3B Has 3309 Blast hits to 3309 proteins in 436 species: Archae - 498%3B Bacteria - 34%3B Metazoa - 1257%3B Fungi - 828%3B Plants - 282%3B Viruses - 0%3B Other Eukaryotes - 410 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10363660, PMID:9611183, PMID:9373170, PMID:12969430, PMID:12952558, PMID:14645734, PMID:15659098, PMID:15941401, PMID:16055689, PMID:16608866, PMID:17828791, PMID:18650403, PMID:20118269, PMID:20516081, PMID:20736450, locus:2036972; locus_type=protein_coding
AT1G21722.1	chr1:007628456	0.0	W/7628456-7628553,7628649-7629252	AT1G21722.1 CDS AT1G21722 ID=AT1G21722.1; Parent=AT1G21722; Name=AT1G21722.1; Note=transmembrane protein; conf_class=4; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78922.1)%3B Has 47 Blast hits to 47 proteins in 13 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1%3B Fungi - 1%3B Plants - 42%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).; conf_rating=***; Dbxref=locus:5019474616; locus_type=protein_coding
AT1G21730.1	chr1:007630365	0.0	W/7630365-7630621,7630718-7630815,7630905-7630994,7631144-7631196,7631345-7631410,7631494-7631547,7631902-7631961,7632090-7632168,7632461-7632528,7632656-7632718,7632839-7632943,7633021-7633125,7633328-7633435,7633516-7633632,7633879-7634043,7634174-7634344,7634501-7634698,7634910-7635050,7635140-7635265,7635393-7635443,7635556-7635603,7635702-7635953,7636050-7636247	AT1G21730.1 CDS AT1G21730 ID=AT1G21730.1; Parent=AT1G21730; Name=AT1G21730.1; Note=P-loop containing nucleoside triphosphate hydrolases superfamily protein; conf_class=2; computational_description=P-loop containing nucleoside triphosphate hydrolases superfamily protein%3B FUNCTIONS IN: microtubule motor activity%2C ATP binding%3B INVOLVED IN: microtubule-based movement%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 9 plant structures%3B EXPRESSED DURING: F mature embryo stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: Kinesin%2C motor region%2C conserved site (InterPro:IPR019821)%2C Kinesin%2C motor domain (InterPro:IPR001752)%3B BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G06670.1)%3B Has 16169 Blast hits to 14119 proteins in 580 species: Archae - 38%3B Bacteria - 464%3B Metazoa - 7403%3B Fungi - 1809%3B Plants - 2013%3B Viruses - 19%3B Other Eukaryotes - 4423 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14576160, PMID:20736450, locus:2036987; locus_type=protein_coding
AT1TE24580	chr1:007630434	0.0	W/7630434-7630573	AT1TE24580 transposable_element AT1TE24580 ID=AT1TE24580; Name=AT1TE24580; Alias=ATCOPIA26
AT1G21738.1	chr1:007641002	0.0	C/7641002-7641094	AT1G21738.1 CDS AT1G21738 ID=AT1G21738.1; Parent=AT1G21738; Name=AT1G21738.1; Note=hypothetical protein; conf_class=10; computational_description=unknown protein%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; Dbxref=PMID:17395691, locus:4515102562; locus_type=protein_coding
AT1G21740.1	chr1:007641580	0.0	W/7641580-7643197,7643669-7643877,7643964-7644187,7644268-7645078	AT1G21740.1 CDS AT1G21740 ID=AT1G21740.1; Parent=AT1G21740; Name=AT1G21740.1; Note=DUF630 family protein%2C putative (DUF630 and DUF632); conf_class=4; computational_description=Protein of unknown function (DUF630 and DUF632)%3B INVOLVED IN: N-terminal protein myristoylation%3B EXPRESSED IN: 10 plant structures%3B EXPRESSED DURING: F mature embryo stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF630 (InterPro:IPR006868)%2C Protein of unknown function DUF632 (InterPro:IPR006867)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF630 and DUF632) (TAIR:AT1G77500.1)%3B Has 1513 Blast hits to 1244 proteins in 193 species: Archae - 7%3B Bacteria - 66%3B Metazoa - 463%3B Fungi - 80%3B Plants - 701%3B Viruses - 0%3B Other Eukaryotes - 196 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:12649433, PMID:12912986, PMID:15937229, locus:2036900; locus_type=protein_coding
AT1G21750.1	chr1:007645767	0.0	W/7645767-7645939,7646330-7646360,7646471-7646758,7646851-7647039,7647116-7647241,7647553-7647690,7647787-7648024,7648116-7648228,7648305-7648514	AT1G21750.1 CDS AT1G21750 ID=AT1G21750.1; Parent=AT1G21750; Name=AT1G21750.1; Note=PDI-like 1-1; curator_summary=Encodes a protein disulfide isomerase-like (PDIL) protein%2C a member of a multigene family within the thioredoxin (TRX) superfamily%3B isoform contains non-consensus GA donor splice site at intron 9. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol%2C beta-mercaptoethanol%2C and tunicamycin). Neither AtIRE1-2 nor AtbZIP60 appear to be required for this response.; conf_class=2; symbol=PDIL1-1; Alias=ATPDI5, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, ATPDIL1-1, PDI-like 1-1, PDI5, PROTEIN DISULFIDE ISOMERASE 5; full_name=PDI-like 1-1; computational_description=PDI-like 1-1 (PDIL1-1)%3B FUNCTIONS IN: protein disulfide isomerase activity%3B INVOLVED IN: in 6 processes%3B LOCATED IN: in 8 components%3B EXPRESSED IN: 29 plant structures%3B EXPRESSED DURING: 16 growth stages%3B CONTAINS InterPro DOMAIN/s: Disulphide isomerase (InterPro:IPR005788)%2C Thioredoxin fold (InterPro:IPR012335)%2C Thioredoxin domain (InterPro:IPR013766)%2C Thioredoxin%2C conserved site (InterPro:IPR017937)%2C Thioredoxin-like subdomain (InterPro:IPR006662)%2C Protein disulphide isomerase (InterPro:IPR005792)%2C Thioredoxin-like (InterPro:IPR017936)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B BEST Arabidopsis thaliana protein match is: PDI-like 1-2 (TAIR:AT1G77510.1)%3B Has 31573 Blast hits to 17834 proteins in 2924 species: Archae - 337%3B Bacteria - 15428%3B Metazoa - 5451%3B Fungi - 1644%3B Plants - 2422%3B Viruses - 29%3B Other Eukaryotes - 6262 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12169696, PMID:11826309, PMID:12492832, PMID:12566592, PMID:12805589, PMID:12853141, PMID:15282545, PMID:15352244, PMID:15618420, PMID:15684019, PMID:15894741, PMID:15998247, PMID:15908592, PMID:15978049, PMID:16199612, PMID:16247729, PMID:16242667, PMID:16547123, PMID:16531467, PMID:16618929, PMID:16648214, PMID:16844841, PMID:16979780, PMID:17194767, PMID:17163439, PMID:17153927, PMID:17828791, PMID:18156219, PMID:18574595, PMID:18650403, PMID:18775970, PMID:18931141, PMID:19880396, PMID:20118269, PMID:21909944, PMID:24064926, locus:2036906; locus_type=protein_coding
AT1G21750.2	chr1:007645767	0.0	W/7645767-7645939,7646330-7646360,7646471-7646758,7646851-7647039,7647116-7647241,7647553-7647690,7647787-7648024,7648116-7648228,7648305-7648411,7648635-7648695	AT1G21750.2 CDS AT1G21750 ID=AT1G21750.2; Parent=AT1G21750; Name=AT1G21750.2; Note=PDI-like 1-1; curator_summary=Encodes a protein disulfide isomerase-like (PDIL) protein%2C a member of a multigene family within the thioredoxin (TRX) superfamily%3B isoform contains non-consensus GA donor splice site at intron 9. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol%2C beta-mercaptoethanol%2C and tunicamycin). Neither AtIRE1-2 nor AtbZIP60 appear to be required for this response.; conf_class=6; symbol=PDIL1-1; Alias=ATPDI5, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, ATPDIL1-1, PDI-like 1-1, PDI5, PROTEIN DISULFIDE ISOMERASE 5; full_name=PDI-like 1-1; computational_description=PDI-like 1-1 (PDIL1-1)%3B FUNCTIONS IN: protein disulfide isomerase activity%3B INVOLVED IN: in 6 processes%3B LOCATED IN: in 8 components%3B EXPRESSED IN: 29 plant structures%3B EXPRESSED DURING: 16 growth stages%3B CONTAINS InterPro DOMAIN/s: Disulphide isomerase (InterPro:IPR005788)%2C Thioredoxin fold (InterPro:IPR012335)%2C Thioredoxin domain (InterPro:IPR013766)%2C Thioredoxin%2C conserved site (InterPro:IPR017937)%2C Thioredoxin-like subdomain (InterPro:IPR006662)%2C Protein disulphide isomerase (InterPro:IPR005792)%2C Thioredoxin-like (InterPro:IPR017936)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B BEST Arabidopsis thaliana protein match is: PDI-like 1-2 (TAIR:AT1G77510.1)%3B Has 31573 Blast hits to 17834 proteins in 2924 species: Archae - 337%3B Bacteria - 15428%3B Metazoa - 5451%3B Fungi - 1644%3B Plants - 2422%3B Viruses - 29%3B Other Eukaryotes - 6262 (source: NCBI BLink).; conf_rating=**; Dbxref=PMID:12169696, PMID:11826309, PMID:12492832, PMID:12566592, PMID:12805589, PMID:12853141, PMID:15282545, PMID:15352244, PMID:15618420, PMID:15684019, PMID:15894741, PMID:15998247, PMID:15908592, PMID:15978049, PMID:16199612, PMID:16247729, PMID:16242667, PMID:16547123, PMID:16531467, PMID:16618929, PMID:16648214, PMID:16844841, PMID:16979780, PMID:17194767, PMID:17163439, PMID:17153927, PMID:17828791, PMID:18156219, PMID:18574595, PMID:18650403, PMID:18775970, PMID:18931141, PMID:19880396, PMID:20118269, PMID:21909944, PMID:24064926, locus:2036906; locus_type=protein_coding
AT1G21760.1	chr1:007649324	0.0	W/7649324-7649333,7649720-7649803,7649896-7650008,7650103-7650316,7650451-7650524,7650619-7650672,7650768-7650875,7650964-7651022,7651254-7651464,7651554-7651613	AT1G21760.1 CDS AT1G21760 ID=AT1G21760.1; Parent=AT1G21760; Name=AT1G21760.1; Note=F-box protein 7; curator_summary=This gene is predicted to encode an F-box protein that is evolutionarily conserved between Arabidopsis and other eukaryotes including S.cerevisiae and humans. It may play a role in regulating translation under conditions of temperature stress. FBP7 transcript levels are increased at high and low temperatures.; conf_class=2; symbol=FBP7; Alias=ATFBP7, F-BOX PROTEIN 7; full_name=F-box protein 7; computational_description=F-box protein 7 (FBP7)%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%3B Has 471 Blast hits to 471 proteins in 160 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 249%3B Fungi - 132%3B Plants - 70%3B Viruses - 0%3B Other Eukaryotes - 20 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12169696, PMID:12795696, PMID:17240087, PMID:17885809, PMID:18775970, PMID:20736450, locus:2036932; locus_type=protein_coding
AT1G21760.2	chr1:007649512	0.0	W/7649512-7649521,7649720-7649803,7649896-7650008,7650103-7650316,7650451-7650524,7650619-7650672,7650768-7650875,7650964-7651022,7651254-7651464,7651554-7651613	AT1G21760.2 CDS AT1G21760 ID=AT1G21760.2; Parent=AT1G21760; Name=AT1G21760.2; Note=F-box protein 7; symbol=FBP7; Alias=ATFBP7, F-BOX PROTEIN 7; full_name=F-box protein 7; curator_summary=This gene is predicted to encode an F-box protein that is evolutionarily conserved between Arabidopsis and other eukaryotes including S.cerevisiae and humans. It may play a role in regulating translation under conditions of temperature stress. FBP7 transcript levels are increased at high and low temperatures.; computational_description=F-box protein 7 (FBP7)%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%3B Has 471 Blast hits to 471 proteins in 160 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 249%3B Fungi - 132%3B Plants - 70%3B Viruses - 0%3B Other Eukaryotes - 20 (source: NCBI BLink).; Dbxref=PMID:12169696, PMID:12795696, PMID:17240087, PMID:17885809, PMID:18775970, PMID:20736450, locus:2036932; locus_type=protein_coding
AT1G21770.1	chr1:007651843	0.0	C/7651843-7651926,7651998-7652249	AT1G21770.1 CDS AT1G21770 ID=AT1G21770.1; Parent=AT1G21770; Name=AT1G21770.1; Note=Acyl-CoA N-acyltransferases (NAT) superfamily protein; conf_class=2; computational_description=Acyl-CoA N-acyltransferases (NAT) superfamily protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: peroxisome%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Acyl-CoA N-acyltransferase (InterPro:IPR016181)%3B BEST Arabidopsis thaliana protein match is: Acyl-CoA N-acyltransferases (NAT) superfamily protein (TAIR:AT1G77540.1)%3B Has 425 Blast hits to 425 proteins in 193 species: Archae - 10%3B Bacteria - 360%3B Metazoa - 6%3B Fungi - 0%3B Plants - 43%3B Viruses - 0%3B Other Eukaryotes - 6 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:17951448, PMID:18650403, PMID:18931141, PMID:20736450, PMID:22487254, locus:2036947; locus_type=protein_coding
AT1G21780.1	chr1:007652476	0.0	W/7652476-7652588,7652668-7652813,7653054-7653169,7653261-7653866	AT1G21780.1 CDS AT1G21780 ID=AT1G21780.1; Parent=AT1G21780; Name=AT1G21780.1; Note=BTB/POZ domain-containing protein; curator_summary=BTB/POZ domain-containing protein. Contains similarity to gb:AJ000644 SPOP (speckle-type POZ protein) from Homo sapiens and contains a PF:00651 BTB/POZ domain. ESTs gb:T75841%2C gb:R89974%2C gb:R30221%2C gb:N96386%2C gb:T76457%2C gb:AI100013 and gb:T76456 come from this gene%3Bsupported by full-length. Interacts with CUL3A and CUL3B.; conf_class=2; computational_description=BTB/POZ domain-containing protein%3B CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069)%2C BTB/POZ fold (InterPro:IPR011333)%2C Kelch related (InterPro:IPR013089)%2C BTB/POZ-like (InterPro:IPR000210)%3B BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT1G55760.1)%3B Has 5195 Blast hits to 5164 proteins in 157 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 3886%3B Fungi - 25%3B Plants - 983%3B Viruses - 68%3B Other Eukaryotes - 233 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14996221, PMID:15659098, PMID:15772280, PMID:15749712, PMID:17346352, PMID:20736450, locus:2036962; locus_type=protein_coding
AT1G21780.2	chr1:007652476	0.0	W/7652476-7652588,7652668-7652813,7653054-7653169,7653261-7653866	AT1G21780.2 CDS AT1G21780 ID=AT1G21780.2; Parent=AT1G21780; Name=AT1G21780.2; Note=BTB/POZ domain-containing protein; curator_summary=BTB/POZ domain-containing protein. Contains similarity to gb:AJ000644 SPOP (speckle-type POZ protein) from Homo sapiens and contains a PF:00651 BTB/POZ domain. ESTs gb:T75841%2C gb:R89974%2C gb:R30221%2C gb:N96386%2C gb:T76457%2C gb:AI100013 and gb:T76456 come from this gene%3Bsupported by full-length. Interacts with CUL3A and CUL3B.; conf_class=2; computational_description=BTB/POZ domain-containing protein%3B CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069)%2C BTB/POZ fold (InterPro:IPR011333)%2C Kelch related (InterPro:IPR013089)%2C BTB/POZ-like (InterPro:IPR000210)%3B BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT1G55760.1)%3B Has 5195 Blast hits to 5164 proteins in 157 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 3886%3B Fungi - 25%3B Plants - 983%3B Viruses - 68%3B Other Eukaryotes - 233 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14996221, PMID:15659098, PMID:15772280, PMID:15749712, PMID:17346352, PMID:20736450, locus:2036962; locus_type=protein_coding
AT1G21790.1	chr1:007654357	0.0	W/7654357-7654615,7654893-7655170,7655362-7655691	AT1G21790.1 CDS AT1G21790 ID=AT1G21790.1; Parent=AT1G21790; Name=AT1G21790.1; Note=TRAM%2C LAG1 and CLN8 (TLC) lipid-sensing domain containing protein; conf_class=2; computational_description=TRAM%2C LAG1 and CLN8 (TLC) lipid-sensing domain containing protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: integral to membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: TRAM/LAG1/CLN8 homology domain (InterPro:IPR006634)%3B Has 174 Blast hits to 174 proteins in 42 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 105%3B Fungi - 0%3B Plants - 63%3B Viruses - 0%3B Other Eukaryotes - 6 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:18775970, PMID:20736450, locus:2201093; locus_type=protein_coding
AT1G21800.1	chr1:007656120	0.0	C/7656120-7656191	AT1G21800.1 tRNA AT1G21800 ID=AT1G21800.1; Parent=AT1G21800; Note=tRNA-Gln; computational_description=tRNA-Gln (anticodon: TTG); Dbxref=PMID:8980477, PMID:23066098, PMID:8980477, locus:3691425; Name=AT1G21800.1; locus_type=pre_trna
AT1G21810.1	chr1:007656578	0.0	C/7656578-7656964,7657051-7658456,7658541-7658637	AT1G21810.1 CDS AT1G21810 ID=AT1G21810.1; Parent=AT1G21810; Name=AT1G21810.1; Note=filament-like protein (DUF869); conf_class=3; computational_description=Plant protein of unknown function (DUF869)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF869%2C plant (InterPro:IPR008587)%3B BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF869) (TAIR:AT1G77580.1)%3B Has 79141 Blast hits to 43153 proteins in 2526 species: Archae - 1269%3B Bacteria - 11097%3B Metazoa - 38829%3B Fungi - 6739%3B Plants - 4917%3B Viruses - 325%3B Other Eukaryotes - 15965 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15020757, PMID:15276459, PMID:21284606, locus:2036977; locus_type=protein_coding
AT1G21810.2	chr1:007656578	0.0	C/7656578-7656964,7657051-7658184	AT1G21810.2 CDS AT1G21810 ID=AT1G21810.2; Parent=AT1G21810; Name=AT1G21810.2; Note=filament-like protein (DUF869); computational_description=Plant protein of unknown function (DUF869)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF869%2C plant (InterPro:IPR008587)%3B BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF869) (TAIR:AT1G77580.1)%3B Has 79141 Blast hits to 43153 proteins in 2526 species: Archae - 1269%3B Bacteria - 11097%3B Metazoa - 38829%3B Fungi - 6739%3B Plants - 4917%3B Viruses - 325%3B Other Eukaryotes - 15965 (source: NCBI BLink).; Dbxref=PMID:15020757, PMID:15276459, PMID:21284606, locus:2036977; locus_type=protein_coding
AT1G21810.3	chr1:007656578	0.0	C/7656578-7656964,7657051-7658456,7658541-7658637	AT1G21810.3 CDS AT1G21810 ID=AT1G21810.3; Parent=AT1G21810; Name=AT1G21810.3; Note=filament-like protein (DUF869); Dbxref=PMID:15020757, PMID:15276459, PMID:21284606, locus:2036977; computational_description=Plant protein of unknown function (DUF869)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF869%2C plant (InterPro:IPR008587)%3B BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF869) (TAIR:AT1G77580.1)%3B Has 79141 Blast hits to 43153 proteins in 2526 species: Archae - 1269%3B Bacteria - 11097%3B Metazoa - 38829%3B Fungi - 6739%3B Plants - 4917%3B Viruses - 325%3B Other Eukaryotes - 15965 (source: NCBI BLink).; locus_type=protein_coding
AT1G21830.1	chr1:007661429	0.0	C/7661429-7661784,7662257-7662521	AT1G21830.1 CDS AT1G21830 ID=AT1G21830.1; Parent=AT1G21830; Name=AT1G21830.1; Note=hypothetical protein; conf_class=2; computational_description=unknown protein%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF740 (InterPro:IPR008004)%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G44608.1)%3B Has 49 Blast hits to 49 proteins in 12 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 49%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12753585, PMID:12007405, PMID:15047898, PMID:16212609, PMID:18650403, locus:2036992; locus_type=protein_coding
AT1G21835.1	chr1:007665664	0.0	W/7665664-7665936	AT1G21835.1 CDS AT1G21835 ID=AT1G21835.1; Parent=AT1G21835; Name=AT1G21835.1; Note=Plant thionin family protein; curator_summary=Encodes a Plant thionin family protein; conf_class=10; computational_description=Plant thionin family protein%3B LOCATED IN: endomembrane system%3B BEST Arabidopsis thaliana protein match is: Plant thionin family protein (TAIR:AT1G34792.1)%3B Has 72 Blast hits to 72 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 72%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=locus:4010713459; locus_type=protein_coding
AT1G21840.1	chr1:007666859	0.0	W/7666859-7667581	AT1G21840.1 CDS AT1G21840 ID=AT1G21840.1; Parent=AT1G21840; Name=AT1G21840.1; Note=urease accessory protein F; curator_summary=Encodes a urease accessory protein which is essential for the activation of plant urease.; conf_class=1; symbol=UREF; full_name=urease accessory protein F; computational_description=urease accessory protein F (UREF)%3B FUNCTIONS IN: nickel ion binding%3B INVOLVED IN: nitrogen compound metabolic process%2C positive regulation of metalloenzyme activity%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Urease accessory protein UreF (InterPro:IPR002639)%3B Has 962 Blast hits to 961 proteins in 436 species: Archae - 16%3B Bacteria - 785%3B Metazoa - 9%3B Fungi - 76%3B Plants - 41%3B Viruses - 0%3B Other Eukaryotes - 35 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16244137, PMID:16545809, PMID:20631318, PMID:20736450, locus:2036997; locus_type=protein_coding
AT1G21840.2	chr1:007666859	0.0	W/7666859-7667581	AT1G21840.2 CDS AT1G21840 ID=AT1G21840.2; Parent=AT1G21840; Name=AT1G21840.2; Note=urease accessory protein F; symbol=UREF; full_name=urease accessory protein F; Dbxref=PMID:16244137, PMID:16545809, PMID:20631318, PMID:20736450, locus:2036997; curator_summary=Encodes a urease accessory protein which is essential for the activation of plant urease.; computational_description=urease accessory protein F (UREF)%3B FUNCTIONS IN: nickel ion binding%3B INVOLVED IN: nitrogen compound metabolic process%2C positive regulation of metalloenzyme activity%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Urease accessory protein UreF (InterPro:IPR002639)%3B Has 962 Blast hits to 961 proteins in 436 species: Archae - 16%3B Bacteria - 785%3B Metazoa - 9%3B Fungi - 76%3B Plants - 41%3B Viruses - 0%3B Other Eukaryotes - 35 (source: NCBI BLink).; locus_type=protein_coding
AT1G21850.1	chr1:007667803	0.0	C/7667803-7668045,7668147-7668225,7668363-7668728,7668859-7669201,7669289-7669388,7669605-7669875,7670192-7670301,7670387-7670530	AT1G21850.1 CDS AT1G21850 ID=AT1G21850.1; Parent=AT1G21850; Name=AT1G21850.1; Note=SKU5 similar 8; conf_class=1; symbol=sks8; full_name=SKU5 similar 8; computational_description=SKU5 similar 8 (sks8)%3B FUNCTIONS IN: oxidoreductase activity%2C copper ion binding%3B INVOLVED IN: oxidation reduction%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: embryo%3B EXPRESSED DURING: C globular stage%3B CONTAINS InterPro DOMAIN/s: Multicopper oxidase%2C type 3 (InterPro:IPR011707)%2C Cupredoxin (InterPro:IPR008972)%2C Multicopper oxidase%2C type 2 (InterPro:IPR011706)%2C Multicopper oxidase%2C type 1 (InterPro:IPR001117)%3B BEST Arabidopsis thaliana protein match is: SKU5 similar 7 (TAIR:AT1G21860.1)%3B Has 5145 Blast hits to 5091 proteins in 951 species: Archae - 16%3B Bacteria - 1604%3B Metazoa - 263%3B Fungi - 1857%3B Plants - 1262%3B Viruses - 0%3B Other Eukaryotes - 143 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12119380, PMID:15986216, PMID:16510518, PMID:20736450, locus:2036911; locus_type=protein_coding
AT1G21860.1	chr1:007671028	0.0	C/7671028-7671231,7671329-7671407,7671624-7671989,7672253-7672595,7672680-7672779,7672954-7673224,7673863-7673972,7674072-7674215	AT1G21860.1 CDS AT1G21860 ID=AT1G21860.1; Parent=AT1G21860; Name=AT1G21860.1; Note=SKU5 similar 7; conf_class=4; symbol=sks7; full_name=SKU5 similar 7; computational_description=SKU5 similar 7 (sks7)%3B FUNCTIONS IN: oxidoreductase activity%2C copper ion binding%3B INVOLVED IN: oxidation reduction%3B LOCATED IN: plant-type cell wall%3B EXPRESSED IN: stem%3B CONTAINS InterPro DOMAIN/s: Multicopper oxidase%2C type 3 (InterPro:IPR011707)%2C Cupredoxin (InterPro:IPR008972)%2C Multicopper oxidase%2C type 2 (InterPro:IPR011706)%2C Multicopper oxidase%2C type 1 (InterPro:IPR001117)%3B BEST Arabidopsis thaliana protein match is: SKU5 similar 8 (TAIR:AT1G21850.1)%3B Has 5059 Blast hits to 4986 proteins in 916 species: Archae - 16%3B Bacteria - 1499%3B Metazoa - 256%3B Fungi - 1883%3B Plants - 1282%3B Viruses - 0%3B Other Eukaryotes - 123 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:12119380, PMID:15986216, PMID:17082308, locus:2201133; locus_type=protein_coding
AT1TE24720	chr1:007674323	0.0	W/7674323-7675043	AT1TE24720 transposable_element AT1TE24720 ID=AT1TE24720; Name=AT1TE24720; Alias=HELITRONY1E
AT1G21864.1	chr1:007675565	0.0	W/7675565-7675846	AT1G21864.1 CDS AT1G21864 ID=AT1G21864.1; Parent=AT1G21864; Name=AT1G21864.1; Note=Plant thionin family protein; curator_summary=Encodes a Plant thionin family protein; conf_class=1; computational_description=Plant thionin family protein%3B LOCATED IN: endomembrane system%3B BEST Arabidopsis thaliana protein match is: Plant thionin family protein (TAIR:AT1G21866.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:4010713460; locus_type=protein_coding
AT1TE24725	chr1:007675858	0.0	C/7675858-7675877	AT1TE24725 transposable_element AT1TE24725 ID=AT1TE24725; Name=AT1TE24725; Alias=HELITRONY1E
AT1TE24730	chr1:007675878	0.0	C/7675878-7676715	AT1TE24730 transposable_element AT1TE24730 ID=AT1TE24730; Name=AT1TE24730; Alias=HELITRONY3
AT1TE24735	chr1:007676716	0.0	C/7676716-7676809	AT1TE24735 transposable_element AT1TE24735 ID=AT1TE24735; Name=AT1TE24735; Alias=BRODYAGA2
AT1TE24740	chr1:007676810	0.0	C/7676810-7677032	AT1TE24740 transposable_element AT1TE24740 ID=AT1TE24740; Name=AT1TE24740; Alias=HELITRONY1A
AT1G21866.1	chr1:007677499	0.0	W/7677499-7677780	AT1G21866.1 CDS AT1G21866 ID=AT1G21866.1; Parent=AT1G21866; Name=AT1G21866.1; Note=Plant thionin family protein; curator_summary=Encodes a Plant thionin family protein; conf_class=1; computational_description=Plant thionin family protein%3B LOCATED IN: endomembrane system%3B BEST Arabidopsis thaliana protein match is: Plant thionin family protein (TAIR:AT1G21864.1)%3B Has 72 Blast hits to 72 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 72%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:4010713461; locus_type=protein_coding
AT1G21870.1	chr1:007678208	0.0	W/7678208-7678321,7678418-7678667,7678763-7678970,7679153-7679384,7679476-7679697	AT1G21870.1 CDS AT1G21870 ID=AT1G21870.1; Parent=AT1G21870; Name=AT1G21870.1; Note=golgi nucleotide sugar transporter 5; curator_summary=Encodes a Golgi-localized nucleotide-sugar transporter.; conf_class=1; symbol=GONST5; full_name=golgi nucleotide sugar transporter 5; computational_description=golgi nucleotide sugar transporter 5 (GONST5)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6%2C transmembrane (InterPro:IPR000620)%2C Protein of unknown function DUF250 (InterPro:IPR004853)%3B BEST Arabidopsis thaliana protein match is: EamA-like transporter family protein (TAIR:AT1G77610.1)%3B Has 3294 Blast hits to 3291 proteins in 314 species: Archae - 0%3B Bacteria - 80%3B Metazoa - 703%3B Fungi - 565%3B Plants - 1531%3B Viruses - 0%3B Other Eukaryotes - 415 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12529511, PMID:12644669, PMID:14690501, PMID:15480787, PMID:15456736, PMID:18667720, PMID:20736450, locus:2201138; locus_type=protein_coding
AT1G21880.1	chr1:007680689	0.0	W/7680689-7681355,7681667-7681784,7681883-7682048	AT1G21880.1 CDS AT1G21880 ID=AT1G21880.1; Parent=AT1G21880; Name=AT1G21880.1; Note=lysm domain GPI-anchored protein 1 precursor; curator_summary=Encodes a lysin-motif protein mediating bacterial peptidoglycan sensing and immunity to bacterial infection. Induction of chitin-responsive genes by chitin treatment is not blocked in the mutant.; conf_class=2; symbol=LYM1; Alias=LYP2, LysM-containing receptor protein 2; full_name=lysm domain GPI-anchored protein 1 precursor; computational_description=lysm domain GPI-anchored protein 1 precursor (LYM1)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: cell wall macromolecule catabolic process%3B LOCATED IN: anchored to plasma membrane%2C plasma membrane%2C anchored to membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidoglycan-binding lysin domain (InterPro:IPR018392)%2C Peptidoglycan-binding Lysin subgroup (InterPro:IPR002482)%3B BEST Arabidopsis thaliana protein match is: Peptidoglycan-binding LysM domain-containing protein (TAIR:AT1G77630.1)%3B Has 655 Blast hits to 634 proteins in 130 species: Archae - 0%3B Bacteria - 234%3B Metazoa - 0%3B Fungi - 1%3B Plants - 403%3B Viruses - 0%3B Other Eukaryotes - 17 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12068095, PMID:12805588, PMID:15937229, PMID:16844829, PMID:18263776, PMID:20736450, PMID:22106285, PMID:22744984, PMID:23221760, locus:2201143; locus_type=protein_coding
AT1G21880.2	chr1:007680689	0.0	W/7680689-7681355,7681667-7681784,7681883-7682044,7682136-7682167,7682255-7682526	AT1G21880.2 CDS AT1G21880 ID=AT1G21880.2; Parent=AT1G21880; Name=AT1G21880.2; Note=lysm domain GPI-anchored protein 1 precursor; curator_summary=Encodes a lysin-motif protein mediating bacterial peptidoglycan sensing and immunity to bacterial infection. Induction of chitin-responsive genes by chitin treatment is not blocked in the mutant.; conf_class=2; symbol=LYM1; Alias=LYP2, LysM-containing receptor protein 2; full_name=lysm domain GPI-anchored protein 1 precursor; computational_description=lysm domain GPI-anchored protein 1 precursor (LYM1)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: cell wall macromolecule catabolic process%3B LOCATED IN: anchored to plasma membrane%2C plasma membrane%2C anchored to membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidoglycan-binding lysin domain (InterPro:IPR018392)%2C Peptidoglycan-binding Lysin subgroup (InterPro:IPR002482)%3B BEST Arabidopsis thaliana protein match is: Peptidoglycan-binding LysM domain-containing protein (TAIR:AT1G77630.1)%3B Has 655 Blast hits to 634 proteins in 130 species: Archae - 0%3B Bacteria - 234%3B Metazoa - 0%3B Fungi - 1%3B Plants - 403%3B Viruses - 0%3B Other Eukaryotes - 17 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12068095, PMID:12805588, PMID:15937229, PMID:16844829, PMID:18263776, PMID:20736450, PMID:22106285, PMID:22744984, PMID:23221760, locus:2201143; locus_type=protein_coding
AT1G05687.1	chr1:007680822	0.0	C/7680822-7681663	AT1G05687.1 antisense_lncRNA AT1G05687 ID=AT1G05687.1; Parent=AT1G05687; Name=AT1G05687.1; description=Natural antisense transcript overlaps with AT1G21880; Note=Natural antisense transcript overlaps with AT1G21880; locus_type=antisense_long_noncoding_rna
AT1G21890.1	chr1:007682808	0.0	C/7682808-7683030,7683564-7683715,7683807-7683965,7684061-7684328,7684803-7684919,7685069-7685131,7685394-7685581	AT1G21890.1 CDS AT1G21890 ID=AT1G21890.1; Parent=AT1G21890; Name=AT1G21890.1; Note=nodulin MtN21 /EamA-like transporter family protein; curator_summary=nodulin MtN21-like transporter family protein; conf_class=2; symbol=UMAMIT19; full_name=Usually multiple acids move in and out Transporters 19; computational_description=nodulin MtN21 /EamA-like transporter family protein%3B LOCATED IN: membrane%3B EXPRESSED IN: inflorescence meristem%2C flower%3B EXPRESSED DURING: petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6%2C transmembrane (InterPro:IPR000620)%3B BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT4G08300.1)%3B Has 3248 Blast hits to 3226 proteins in 574 species: Archae - 30%3B Bacteria - 1576%3B Metazoa - 4%3B Fungi - 0%3B Plants - 1228%3B Viruses - 0%3B Other Eukaryotes - 410 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:14722770, PMID:20736450, locus:2201148; locus_type=protein_coding
AT1G21890.2	chr1:007683464	0.0	C/7683464-7683715,7683807-7683965,7684061-7684328,7684803-7684919,7685069-7685131,7685394-7685581	AT1G21890.2 CDS AT1G21890 ID=AT1G21890.2; Parent=AT1G21890; Name=AT1G21890.2; Note=nodulin MtN21 /EamA-like transporter family protein; symbol=UMAMIT19; full_name=Usually multiple acids move in and out Transporters 19; curator_summary=nodulin MtN21-like transporter family protein; computational_description=nodulin MtN21 /EamA-like transporter family protein%3B LOCATED IN: membrane%3B EXPRESSED IN: inflorescence meristem%2C flower%3B EXPRESSED DURING: petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6%2C transmembrane (InterPro:IPR000620)%3B BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT4G08300.1)%3B Has 3248 Blast hits to 3226 proteins in 574 species: Archae - 30%3B Bacteria - 1576%3B Metazoa - 4%3B Fungi - 0%3B Plants - 1228%3B Viruses - 0%3B Other Eukaryotes - 410 (source: NCBI BLink).; Dbxref=PMID:14722770, PMID:20736450, locus:2201148; locus_type=protein_coding
AT1TE24780	chr1:007690038	0.0	W/7690038-7690172	AT1TE24780 transposable_element AT1TE24780 ID=AT1TE24780; Name=AT1TE24780; Alias=ATLINE2
AT1G21900.1	chr1:007691165	0.0	C/7691165-7691309,7691401-7691477,7691559-7691771,7692112-7692327	AT1G21900.1 CDS AT1G21900 ID=AT1G21900.1; Parent=AT1G21900; Name=AT1G21900.1; Note=emp24/gp25L/p24 family/GOLD family protein; curator_summary=Encodes an ER-localized p24 protein. Interacts with p24beta2 at ER export sites for ER exit and coupled transport to the Golgi apparatus. Once in the Golgi%2C p24delta5 interacts very efficiently with the COPI machinery for retrograde transport back to the ER.; conf_class=2; symbol=p24delta5; full_name=p24 subfamily delta 5; computational_description=emp24/gp25L/p24 family/GOLD family protein%3B FUNCTIONS IN: protein transmembrane transporter activity%3B INVOLVED IN: intracellular protein transport%2C transport%3B LOCATED IN: endomembrane system%2C integral to membrane%2C membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038)%2C emp24/gp25L/p24 (InterPro:IPR000348)%3B BEST Arabidopsis thaliana protein match is: emp24/gp25L/p24 family/GOLD family protein (TAIR:AT1G09580.1)%3B Has 1629 Blast hits to 1627 proteins in 232 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 735%3B Fungi - 476%3B Plants - 235%3B Viruses - 0%3B Other Eukaryotes - 183 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16911220, PMID:18650403, PMID:18805951, PMID:18775970, PMID:22577184, locus:2201098; locus_type=protein_coding
AT1G21910.1	chr1:007696655	0.0	W/7696655-7697347	AT1G21910.1 CDS AT1G21910 ID=AT1G21910.1; Parent=AT1G21910; Name=AT1G21910.1; Note=Integrase-type DNA-binding superfamily protein; curator_summary=encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1%2C RAP2.9 and RAP2.10.; conf_class=1; symbol=DREB26; full_name=dehydration response element-binding protein 26; computational_description=Integrase-type DNA-binding superfamily protein%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B LOCATED IN: nucleus%2C chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: DNA-binding%2C integrase-type (InterPro:IPR016177)%2C Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (InterPro:IPR001471)%3B BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G77640.1)%3B Has 6386 Blast hits to 5661 proteins in 267 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 99%3B Fungi - 9%3B Plants - 5687%3B Viruses - 2%3B Other Eukaryotes - 589 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11118137, PMID:14576160, PMID:14722088, PMID:15235117, PMID:15333754, PMID:15489341, PMID:15720654, PMID:16244138, PMID:16934950, PMID:17337630, PMID:17411438, PMID:17478635, PMID:18053238, PMID:18434607, PMID:18783601, PMID:21069430, PMID:22037706, PMID:24614501, locus:2201103; locus_type=protein_coding
AT1G21920.1	chr1:007704454	0.0	C/7704454-7704612,7704690-7704918,7705001-7705866	AT1G21920.1 CDS AT1G21920 ID=AT1G21920.1; Parent=AT1G21920; Name=AT1G21920.1; Note=Histone H3 K4-specific methyltransferase SET7/9 family protein; conf_class=2; computational_description=Histone H3 K4-specific methyltransferase SET7/9 family protein%3B CONTAINS InterPro DOMAIN/s: MORN motif (InterPro:IPR003409)%3B BEST Arabidopsis thaliana protein match is: Histone H3 K4-specific methyltransferase SET7/9 family protein (TAIR:AT1G77660.1)%3B Has 24355 Blast hits to 6247 proteins in 541 species: Archae - 0%3B Bacteria - 3533%3B Metazoa - 3700%3B Fungi - 215%3B Plants - 2241%3B Viruses - 0%3B Other Eukaryotes - 14666 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:15310832, PMID:15377757, PMID:16330523, PMID:23505340, locus:2201113; locus_type=protein_coding
AT1G21920.2	chr1:007704675	0.0	C/7704675-7704918,7705001-7705866	AT1G21920.2 CDS AT1G21920 ID=AT1G21920.2; Parent=AT1G21920; Name=AT1G21920.2; Note=Histone H3 K4-specific methyltransferase SET7/9 family protein; computational_description=Histone H3 K4-specific methyltransferase SET7/9 family protein%3B CONTAINS InterPro DOMAIN/s: MORN motif (InterPro:IPR003409)%3B BEST Arabidopsis thaliana protein match is: Histone H3 K4-specific methyltransferase SET7/9 family protein (TAIR:AT1G77660.1)%3B Has 24355 Blast hits to 6247 proteins in 541 species: Archae - 0%3B Bacteria - 3533%3B Metazoa - 3700%3B Fungi - 215%3B Plants - 2241%3B Viruses - 0%3B Other Eukaryotes - 14666 (source: NCBI BLink).; Dbxref=PMID:15310832, PMID:15377757, PMID:16330523, PMID:23505340, locus:2201113; locus_type=protein_coding
AT1TE24830	chr1:007706435	0.0	W/7706435-7707375	AT1TE24830 transposable_element AT1TE24830 ID=AT1TE24830; Name=AT1TE24830; Alias=HELITRONY1E
AT1G21925.1	chr1:007710423	0.0	C/7710423-7710725	AT1G21925.1 CDS AT1G21925 ID=AT1G21925.1; Parent=AT1G21925; Name=AT1G21925.1; Note=Plant thionin family protein; curator_summary=Encodes a Plant thionin family protein; conf_class=8; computational_description=Plant thionin family protein%3B LOCATED IN: endomembrane system%3B BEST Arabidopsis thaliana protein match is: Plant thionin family protein (TAIR:AT1G21928.1)%3B Has 75 Blast hits to 75 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 75%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*; Dbxref=locus:4010713462; locus_type=protein_coding
AT1G21928.1	chr1:007712211	0.0	C/7712211-7712513	AT1G21928.1 CDS AT1G21928 ID=AT1G21928.1; Parent=AT1G21928; Name=AT1G21928.1; Note=Plant thionin family protein; curator_summary=Encodes a Plant thionin family protein; conf_class=10; computational_description=Plant thionin family protein%3B LOCATED IN: endomembrane system%3B BEST Arabidopsis thaliana protein match is: Plant thionin family protein (TAIR:AT1G21925.1)%3B Has 75 Blast hits to 75 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 75%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; Dbxref=locus:4010713463; locus_type=protein_coding
AT1G21930.1	chr1:007713466	0.0	W/7713466-7713515,7714052-7714298	AT1G21930.1 CDS AT1G21930 ID=AT1G21930.1; Parent=AT1G21930; Name=AT1G21930.1; Note=transmembrane protein; conf_class=2; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G42150.3)%3B Has 43 Blast hits to 43 proteins in 13 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 43%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=****; Dbxref=locus:2201123; locus_type=protein_coding
AT1TE24850	chr1:007714708	0.0	W/7714708-7715145,7717356-7719501,7719704-7722547	AT1TE24850 transposable_element AT1TE24850 ID=AT1TE24850; Name=AT1TE24850; Alias=ATCOPIA78
AT1G21940.1	chr1:007715170	0.0	C/7715170-7715561,7716816-7716975	AT1G21940.1 CDS AT1G21940 ID=AT1G21940.1; Parent=AT1G21940; Name=AT1G21940.1; Note=transmembrane protein; conf_class=9; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21950.1)%3B Has 19 Blast hits to 12 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 19%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*; Dbxref=locus:2201118; locus_type=protein_coding
AT1G21945.1	chr1:007717826	0.0	W/7717826-7722120	AT1G21945.1 CDS AT1G21945 ID=AT1G21945.1; Parent=AT1G21945; Name=AT1G21945.1; index=1; computational_description=copia-like retrotransposon family%2C has a 1.7e-243 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family); Dbxref=locus:2826718; Note=transposable_element_gene; locus_type=transposable_element_gene
AT1G21950.1	chr1:007723471	0.0	C/7723471-7723863	AT1G21950.1 CDS AT1G21950 ID=AT1G21950.1; Parent=AT1G21950; Name=AT1G21950.1; Note=transmembrane protein; conf_class=1; computational_description=unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21940.1)%3B Has 10 Blast hits to 10 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 10%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:17915010, locus:2201153; locus_type=protein_coding
AT1TE24855	chr1:007725248	0.0	W/7725248-7725324,7725320-7725868	AT1TE24855 transposable_element AT1TE24855 ID=AT1TE24855; Name=AT1TE24855; Alias=HELITRONY3
AT1G21960.1	chr1:007725972	0.0	W/7725972-7726586	AT1G21960.1 CDS AT1G21960 ID=AT1G21960.1; Parent=AT1G21960; Name=AT1G21960.1; Note=RING/U-box superfamily protein; conf_class=1; computational_description=RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: Zinc finger%2C C3HC4 type (RING finger) family protein (TAIR:AT1G18760.1)%3B Has 8070 Blast hits to 8054 proteins in 255 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2404%3B Fungi - 520%3B Plants - 4111%3B Viruses - 10%3B Other Eukaryotes - 1025 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:11983057, locus:2201158; locus_type=protein_coding
AT1G21970.1	chr1:007727750	0.0	C/7727750-7728414,7729520-7729571	AT1G21970.1 CDS AT1G21970 ID=AT1G21970.1; Parent=AT1G21970; Name=AT1G21970.1; Note=Histone superfamily protein; curator_summary=Transcriptional activator of genes required for both embryo maturation and cellular differentiation. Sequence is similar to HAP3 subunit of the CCAAT-box binding factor. HAP3 subunit is divided into three domains: an amino-terminal A domain%2C a central B domain%2C and a carboxyl-terminal C domain. LEC1 shared high similarity with other HAP3 homologs only in central%2C B domain. LEC1 is required for the specification of cotyledon identity and the completion of embryo maturation. It was sufficient to induce embryogenic programs in vegetative cells%2C suggesting that LEC1 is a major embryonic regulator that mediates the switch between embryo and vegetative development. Mutants are desiccation intolerant%2C have trichomes on cotyledons and exhibit precocious meristem activation. Levels of the ABI3 and FUS3 transcripts were significantly reduced in developing siliques of the lec1-1 mutants%2C indicating that LEC1 down-regulates FUS3 and ABI3.When LEC1 is overexpressed from an inducible promoter%2C the expression of numerous genes involved in fatty acid biosynthesis is increased suggesting a role in positive regulation of FA biosynthesis.; conf_class=3; symbol=LEC1; Alias=AtLEC1, EMB 212, EMBRYO DEFECTIVE 212, EMB212, EMBRYO DEFECTIVE 212, NF-YB9, NUCLEAR FACTOR Y, SUBUNIT B9; full_name=LEAFY COTYLEDON 1; computational_description=LEAFY COTYLEDON 1 (LEC1)%3B FUNCTIONS IN: transcription activator activity%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: in 6 processes%3B LOCATED IN: nucleus%2C intracellular%3B EXPRESSED IN: seed%2C endosperm%2C cultured somatic embryo%3B EXPRESSED DURING: C globular stage%2C B proembryo stage%2C D bilateral stage%2C E expanded cotyledon stage%3B CONTAINS InterPro DOMAIN/s: Transcription factor%2C CBFA/NFYB%2C DNA topoisomerase (InterPro:IPR003957)%2C Histone-fold (InterPro:IPR009072)%2C Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958)%2C Transcription factor%2C NFYB/HAP3%2C conserved site (InterPro:IPR003956)%3B BEST Arabidopsis thaliana protein match is: nuclear factor Y%2C subunit B6 (TAIR:AT5G47670.2)%3B Has 1463 Blast hits to 1463 proteins in 243 species: Archae - 2%3B Bacteria - 0%3B Metazoa - 492%3B Fungi - 348%3B Plants - 517%3B Viruses - 0%3B Other Eukaryotes - 104 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10948227, PMID:10787046, PMID:10759505, PMID:10743655, PMID:10570159, PMID:10047566, PMID:9839460, PMID:9681014, PMID:9678577, PMID:9657152, PMID:9286105, PMID:8953767, PMID:11118137, PMID:12029467, PMID:12244265, PMID:12244233, PMID:12529517, PMID:12509518, PMID:12578989, PMID:12834400, PMID:14676287, PMID:15051045, PMID:15695450, PMID:16034595, PMID:16107256, PMID:16450129, PMID:16514561, PMID:16731585, PMID:16935993, PMID:17158584, PMID:17522888, PMID:18024558, PMID:18094994, PMID:18057048, PMID:18203869, PMID:18287041, PMID:18476867, PMID:18689444, PMID:19207209, PMID:18695688, PMID:19754639, PMID:20385809, PMID:21282328, PMID:21562329, PMID:22162868, PMID:22452853, PMID:22933713, PMID:22995285, PMID:23073004, PMID:23230849, PMID:23314941, PMID:23505340, PMID:23776713, PMID:23810531, PMID:23995083, PMID:24043445, PMID:24363987, PMID:23951228, PMID:24664206, PMID:24722549, PMID:25211528, PMID:25282558, PMID:25581843, locus:2201163; locus_type=protein_coding
AT1TE24865	chr1:007729807	0.0	W/7729807-7730291	AT1TE24865 transposable_element AT1TE24865 ID=AT1TE24865; Name=AT1TE24865; Alias=HELITRONY1A
AT1G21973.1	chr1:007730911	0.0	C/7730911-7731144	AT1G21973.1 pseudogenic_transcript AT1G21973 ID=AT1G21973.1; Parent=AT1G21973; Name=AT1G21973.1; index=1; Note=pseudogene; curator_summary=Encodes a Plant thionin family protein [pseudogene]; Dbxref=locus:4010713464, locus:4010713464; locus_type=pseudogene; computational_description=pseudogene of Plant thionin family protein
AT1G21980.1	chr1:007735053	0.0	W/7735053-7736149,7736244-7736408,7736577-7736742,7736957-7737067,7737148-7737341,7737431-7737561,7737647-7737740,7738009-7738309	AT1G21980.1 CDS AT1G21980 ID=AT1G21980.1; Parent=AT1G21980; Name=AT1G21980.1; Note=phosphatidylinositol-4-phosphate 5-kinase 1; curator_summary=Type I phosphatidylinositol-4-phosphate 5-kinase. Preferentially phosphorylates PtdIns4P. Induced by water stress and abscisic acid in Arabidopsis thaliana. Expressed in procambial cells of leaves%2C flowers and roots. A N-terminal Membrane Occupation and Recognition Nexus (MORN)affects enzyme activity and distribution.; conf_class=1; symbol=PIP5K1; Alias=ATPIP5K1, phosphatidylinositol-4-phosphate 5-kinase 1, ATPIPK1; full_name=phosphatidylinositol-4-phosphate 5-kinase 1; computational_description=phosphatidylinositol-4-phosphate 5-kinase 1 (PIP5K1)%3B CONTAINS InterPro DOMAIN/s: Phosphatidylinositol-4-phosphate 5-kinase%2C core%2C subgroup (InterPro:IPR016034)%2C Phosphatidylinositol-4-phosphate 5-kinase%2C plant (InterPro:IPR017163)%2C MORN motif (InterPro:IPR003409)%2C Phosphatidylinositol-4-phosphate 5-kinase%2C core (InterPro:IPR002498)%3B BEST Arabidopsis thaliana protein match is: phosphatidylinositol-4-phosphate 5-kinase 2 (TAIR:AT1G77740.1)%3B Has 28574 Blast hits to 7954 proteins in 630 species: Archae - 0%3B Bacteria - 3995%3B Metazoa - 4425%3B Fungi - 453%3B Plants - 2526%3B Viruses - 0%3B Other Eukaryotes - 17175 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:9753781, PMID:11672432, PMID:11489170, PMID:12226484, PMID:15040888, PMID:15949803, PMID:16935993, PMID:17197438, PMID:17379598, PMID:18178770, PMID:20427464, PMID:23505340, PMID:24326589, PMID:24876254, locus:2201108; locus_type=protein_coding
AT1G05693.1	chr1:007739696	0.0	C/7739696-7740012	AT1G05693.1 lnc_RNA AT1G05693 ID=AT1G05693.1; Parent=AT1G05693; Name=AT1G05693.1; locus_type=long_noncoding_rna
AT1G05697.1	chr1:007739737	0.0	W/7739737-7739935	AT1G05697.1 ncRNA AT1G05697 ID=AT1G05697.1; Parent=AT1G05697; Name=AT1G05697.1; locus_type=other_rna
AT1G21990.1	chr1:007740530	0.0	C/7740530-7740841,7740933-7741073,7741162-7742106	AT1G21990.1 CDS AT1G21990 ID=AT1G21990.1; Parent=AT1G21990; Name=AT1G21990.1; Note=F-box/RNI-like/FBD-like domains-containing protein; conf_class=5; computational_description=F-box/RNI-like/FBD-like domains-containing protein%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%2C FBD-like (InterPro:IPR006566)%3B BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT2G29930.3)%3B Has 1523 Blast hits to 1486 proteins in 21 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1523%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=***; Dbxref=locus:2030536; locus_type=protein_coding
AT1TE24900	chr1:007742722	0.0	C/7742722-7742941	AT1TE24900 transposable_element AT1TE24900 ID=AT1TE24900; Name=AT1TE24900; Alias=ATCOPIA17
AT1G22000.1	chr1:007744189	0.0	W/7744189-7745145,7745232-7745369,7745442-7745744	AT1G22000.1 CDS AT1G22000 ID=AT1G22000.1; Parent=AT1G22000; Name=AT1G22000.1; Note=LOW protein: F-box/FBD/LRR-like protein; conf_class=6; computational_description=FBD%2C F-box and Leucine Rich Repeat domains containing protein%3B CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596)%2C F-box domain%2C cyclin-like (InterPro:IPR001810)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%2C FBD-like (InterPro:IPR006566)%2C Leucine-rich repeat 2 (InterPro:IPR013101)%3B BEST Arabidopsis thaliana protein match is: FBD%2C F-box and Leucine Rich Repeat domains containing protein (TAIR:AT1G26890.1)%3B Has 13987 Blast hits to 10490 proteins in 830 species: Archae - 181%3B Bacteria - 1133%3B Metazoa - 6573%3B Fungi - 931%3B Plants - 2368%3B Viruses - 38%3B Other Eukaryotes - 2763 (source: NCBI BLink).; conf_rating=**; Dbxref=locus:2030546; locus_type=protein_coding
AT1G22010.1	chr1:007749571	0.0	W/7749571-7750062	AT1G22010.1 CDS AT1G22010 ID=AT1G22010.1; Parent=AT1G22010; Name=AT1G22010.1; Note=hypothetical protein; conf_class=1; computational_description=unknown protein%3B Has 12 Blast hits to 12 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 12%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:2030561; locus_type=protein_coding
AT1G22015.1	chr1:007751225	0.0	C/7751225-7751382,7751495-7751604,7751711-7751836,7751932-7752019,7752115-7752235,7752310-7752382,7752459-7752522,7752615-7752814,7752910-7752968,7753085-7753184,7753328-7753425	AT1G22015.1 CDS AT1G22015 ID=AT1G22015.1; Parent=AT1G22015; Name=AT1G22015.1; Note=Galactosyltransferase family protein; conf_class=2; symbol=DD46; computational_description=DD46%3B FUNCTIONS IN: transferase activity%2C transferring hexosyl groups%2C galactosyltransferase activity%3B INVOLVED IN: protein amino acid glycosylation%3B LOCATED IN: endomembrane system%2C membrane%3B EXPRESSED IN: 6 plant structures%3B EXPRESSED DURING: 4 anthesis%2C C globular stage%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Glycosyl transferase%2C family 31 (InterPro:IPR002659)%3B BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein (TAIR:AT1G77810.2)%3B Has 1691 Blast hits to 1677 proteins in 112 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 1078%3B Fungi - 8%3B Plants - 564%3B Viruses - 0%3B Other Eukaryotes - 39 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16299181, PMID:16798889, PMID:17559508, PMID:17855429, PMID:18548197, PMID:20226671, locus:505006138; locus_type=protein_coding
AT1TE24930	chr1:007753465	0.0	W/7753465-7753538	AT1TE24930 transposable_element AT1TE24930 ID=AT1TE24930; Name=AT1TE24930; Alias=ATREP11
AT1TE24935	chr1:007753539	0.0	C/7753539-7754191	AT1TE24935 transposable_element AT1TE24935 ID=AT1TE24935; Name=AT1TE24935; Alias=HELITRONY1D
AT1G22020.1	chr1:007754599	0.0	W/7754599-7755666,7755820-7756225,7756646-7756747,7756864-7757087	AT1G22020.1 CDS AT1G22020 ID=AT1G22020.1; Parent=AT1G22020; Name=AT1G22020.1; Note=serine hydroxymethyltransferase 6; curator_summary=Encodes a putative serine hydroxymethyltransferase.; conf_class=1; symbol=SHM6; full_name=serine hydroxymethyltransferase 6; computational_description=serine hydroxymethyltransferase 6 (SHM6)%3B FUNCTIONS IN: pyridoxal phosphate binding%2C glycine hydroxymethyltransferase activity%2C catalytic activity%3B INVOLVED IN: glycine metabolic process%2C L-serine metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase%2C major domain (InterPro:IPR015424)%2C Serine hydroxymethyltransferase%2C pyridoxal phosphate binding site (InterPro:IPR019798)%2C Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (InterPro:IPR015421)%2C Serine hydroxymethyltransferase (InterPro:IPR001085)%3B BEST Arabidopsis thaliana protein match is: serine hydroxymethyltransferase 7 (TAIR:AT1G36370.1)%3B Has 11545 Blast hits to 11518 proteins in 2846 species: Archae - 258%3B Bacteria - 6402%3B Metazoa - 340%3B Fungi - 287%3B Plants - 348%3B Viruses - 6%3B Other Eukaryotes - 3904 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:12644654, PMID:18775970, locus:2030581; locus_type=protein_coding
AT1G22020.2	chr1:007754599	0.0	W/7754599-7755666,7755820-7756225,7756646-7756747,7756864-7757087	AT1G22020.2 CDS AT1G22020 ID=AT1G22020.2; Parent=AT1G22020; Name=AT1G22020.2; Note=serine hydroxymethyltransferase 6; symbol=SHM6; full_name=serine hydroxymethyltransferase 6; Dbxref=PMID:12644654, PMID:18775970, locus:2030581; curator_summary=Encodes a putative serine hydroxymethyltransferase.; computational_description=serine hydroxymethyltransferase 6 (SHM6)%3B FUNCTIONS IN: pyridoxal phosphate binding%2C glycine hydroxymethyltransferase activity%2C catalytic activity%3B INVOLVED IN: glycine metabolic process%2C L-serine metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase%2C major domain (InterPro:IPR015424)%2C Serine hydroxymethyltransferase%2C pyridoxal phosphate binding site (InterPro:IPR019798)%2C Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (InterPro:IPR015421)%2C Serine hydroxymethyltransferase (InterPro:IPR001085)%3B BEST Arabidopsis thaliana protein match is: serine hydroxymethyltransferase 7 (TAIR:AT1G36370.1)%3B Has 11545 Blast hits to 11518 proteins in 2846 species: Archae - 258%3B Bacteria - 6402%3B Metazoa - 340%3B Fungi - 287%3B Plants - 348%3B Viruses - 6%3B Other Eukaryotes - 3904 (source: NCBI BLink).; locus_type=protein_coding
AT1G22030.1	chr1:007759337	0.0	C/7759337-7759987,7760065-7760415	AT1G22030.1 CDS AT1G22030 ID=AT1G22030.1; Parent=AT1G22030; Name=AT1G22030.1; Note=BPS1-like protein; conf_class=1; computational_description=CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511)%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77855.1)%3B Has 99 Blast hits to 99 proteins in 17 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 3%3B Fungi - 0%3B Plants - 96%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:2030591; locus_type=protein_coding
AT1TE24950	chr1:007761116	0.0	W/7761116-7761200	AT1TE24950 transposable_element AT1TE24950 ID=AT1TE24950; Name=AT1TE24950; Alias=AT9NMU1
AT1TE24955	chr1:007761201	0.0	C/7761201-7762110	AT1TE24955 transposable_element AT1TE24955 ID=AT1TE24955; Name=AT1TE24955; Alias=AT9NMU1
AT1TE24960	chr1:007762111	0.0	C/7762111-7762136	AT1TE24960 transposable_element AT1TE24960 ID=AT1TE24960; Name=AT1TE24960; Alias=AT9NMU1
AT1TE24965	chr1:007762137	0.0	C/7762137-7762164	AT1TE24965 transposable_element AT1TE24965 ID=AT1TE24965; Name=AT1TE24965; Alias=AT9NMU1
AT1G08955.1	chr1:007765704	0.0	W/7765704-7766679	AT1G08955.1 transcript_region AT1G08955 ID=AT1G08955.1; Parent=AT1G08955; computational_description=novel transcribed region; Name=AT1G08955.1; locus_type=novel_transcribed_region
AT1TE24975	chr1:007766430	0.0	W/7766430-7766584	AT1TE24975 transposable_element AT1TE24975 ID=AT1TE24975; Name=AT1TE24975; Alias=ATSINE2A
AT1G22040.1	chr1:007768370	0.0	W/7768370-7769797	AT1G22040.1 CDS AT1G22040 ID=AT1G22040.1; Parent=AT1G22040; Name=AT1G22040.1; Note=Galactose oxidase/kelch repeat superfamily protein; conf_class=2; computational_description=Galactose oxidase/kelch repeat superfamily protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: N-terminal protein myristoylation%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C Galactose oxidase/kelch%2C beta-propeller (InterPro:IPR011043)%2C Kelch repeat type 1 (InterPro:IPR006652)%2C Kelch related (InterPro:IPR013089)%2C Kelch-type beta propeller (InterPro:IPR015915)%3B BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G55270.1)%3B Has 10813 Blast hits to 5578 proteins in 328 species: Archae - 18%3B Bacteria - 659%3B Metazoa - 8206%3B Fungi - 35%3B Plants - 1449%3B Viruses - 72%3B Other Eukaryotes - 374 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:12912986, PMID:14576160, PMID:18650403, PMID:20736450, locus:2030601; locus_type=protein_coding
AT1G22050.1	chr1:007771897	0.0	W/7771897-7772029,7772485-7772655,7772788-7772843	AT1G22050.1 CDS AT1G22050 ID=AT1G22050.1; Parent=AT1G22050; Name=AT1G22050.1; Note=membrane-anchored ubiquitin-fold protein 6 precursor; conf_class=1; symbol=MUB6; full_name=membrane-anchored ubiquitin-fold protein 6 precursor; computational_description=membrane-anchored ubiquitin-fold protein 6 precursor (MUB6)%3B CONTAINS InterPro DOMAIN/s: Membrane-anchored ubiquitin-fold protein%2C HCG-1 (InterPro:IPR017000)%2C Ubiquitin supergroup (InterPro:IPR019955)%3B BEST Arabidopsis thaliana protein match is: membrane-anchored ubiquitin-fold protein 5 precursor (TAIR:AT1G77870.1)%3B Has 161 Blast hits to 161 proteins in 22 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 4%3B Fungi - 0%3B Plants - 157%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:16831869, PMID:20736450, locus:2030616; locus_type=protein_coding
AT1G05703.1	chr1:007772133	0.0	C/7772133-7772582	AT1G05703.1 antisense_lncRNA AT1G05703 ID=AT1G05703.1; Parent=AT1G05703; Name=AT1G05703.1; description=Natural antisense transcript overlaps with AT1G22050; Note=Natural antisense transcript overlaps with AT1G22050; locus_type=antisense_long_noncoding_rna
AT1G22060.1	chr1:007773373	0.0	C/7773373-7773649,7773743-7773885,7773967-7774068,7774241-7774396,7774704-7779458,7779672-7779836,7779947-7780069,7780155-7780355,7780509-7780586	AT1G22060.1 CDS AT1G22060 ID=AT1G22060.1; Parent=AT1G22060; Name=AT1G22060.1; Note=sporulation-specific protein; conf_class=4; computational_description=LOCATED IN: vacuole%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B BEST Arabidopsis thaliana protein match is: FBD%2C F-box and Leucine Rich Repeat domains containing protein (TAIR:AT1G22000.1)%3B Has 84739 Blast hits to 38714 proteins in 2257 species: Archae - 1436%3B Bacteria - 11314%3B Metazoa - 40747%3B Fungi - 7706%3B Plants - 4675%3B Viruses - 308%3B Other Eukaryotes - 18553 (source: NCBI BLink).; conf_rating=***; Dbxref=PMID:16684236, locus:2030541; locus_type=protein_coding
AT1G22060.2	chr1:007773373	0.0	C/7773373-7773649,7773743-7773885,7773967-7774068,7774241-7774396,7774704-7779458,7779672-7779836,7779947-7780069,7780155-7780355,7780509-7780586	AT1G22060.2 CDS AT1G22060 ID=AT1G22060.2; Parent=AT1G22060; Name=AT1G22060.2; Note=sporulation-specific protein; Dbxref=PMID:16684236, locus:2030541; computational_description=LOCATED IN: vacuole%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B BEST Arabidopsis thaliana protein match is: FBD%2C F-box and Leucine Rich Repeat domains containing protein (TAIR:AT1G22000.1)%3B Has 84739 Blast hits to 38714 proteins in 2257 species: Archae - 1436%3B Bacteria - 11314%3B Metazoa - 40747%3B Fungi - 7706%3B Plants - 4675%3B Viruses - 308%3B Other Eukaryotes - 18553 (source: NCBI BLink).; locus_type=protein_coding
AT1G05707.1	chr1:007781197	0.0	W/7781197-7781712	AT1G05707.1 lnc_RNA AT1G05707 ID=AT1G05707.1; Parent=AT1G05707; Name=AT1G05707.1; locus_type=long_noncoding_rna
AT1TE25020	chr1:007782647	0.0	C/7782647-7783016	AT1TE25020 transposable_element AT1TE25020 ID=AT1TE25020; Name=AT1TE25020; Alias=HELITRONY3
AT1TE25025	chr1:007783017	0.0	W/7783017-7784339	AT1TE25025 transposable_element AT1TE25025 ID=AT1TE25025; Name=AT1TE25025; Alias=ATREP15
AT1G22065.1	chr1:007785889	0.0	W/7785889-7786107	AT1G22065.1 CDS AT1G22065 ID=AT1G22065.1; Parent=AT1G22065; Name=AT1G22065.1; Note=hypothetical protein; conf_class=1; computational_description=unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77885.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:4515102564; locus_type=protein_coding
AT1TE25030	chr1:007786504	0.0	C/7786504-7787318	AT1TE25030 transposable_element AT1TE25030 ID=AT1TE25030; Name=AT1TE25030; Alias=ATREP10B
AT1TE25035	chr1:007787596	0.0	W/7787596-7787625	AT1TE25035 transposable_element AT1TE25035 ID=AT1TE25035; Name=AT1TE25035; Alias=BRODYAGA2
AT1TE25040	chr1:007787626	0.0	W/7787626-7788203	AT1TE25040 transposable_element AT1TE25040 ID=AT1TE25040; Name=AT1TE25040; Alias=ATREP10B
AT1TE25045	chr1:007788825	0.0	W/7788825-7789179	AT1TE25045 transposable_element AT1TE25045 ID=AT1TE25045; Name=AT1TE25045; Alias=BRODYAGA1A
AT1G22070.1	chr1:007789651	0.0	W/7789651-7789656,7789989-7790189,7790276-7790362,7790498-7790557,7790633-7790710,7790797-7790860,7790961-7791232,7791309-7791542,7791669-7791821	AT1G22070.1 CDS AT1G22070 ID=AT1G22070.1; Parent=AT1G22070; Name=AT1G22070.1; Note=transcription factor TGA3; curator_summary=Encodes a transcription factor. Like other TGAla-related factors%2C TGA3 has a highly conserved bZIP region and exhibits similar DNA-binding properties.; conf_class=2; symbol=TGA3; full_name=TGA1A-related gene 3; computational_description=TGA1A-related gene 3 (TGA3)%3B CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827)%2C bZIP transcription factor%2C bZIP-1 (InterPro:IPR011616)%3B BEST Arabidopsis thaliana protein match is: bZIP transcription factor family protein (TAIR:AT1G77920.1)%3B Has 1024 Blast hits to 1024 proteins in 132 species: Archae - 0%3B Bacteria - 78%3B Metazoa - 5%3B Fungi - 45%3B Plants - 790%3B Viruses - 0%3B Other Eukaryotes - 106 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:10659709, PMID:8672891, PMID:8628224, PMID:7704051, PMID:8003690, PMID:11118137, PMID:11782485, PMID:11906833, PMID:12897257, PMID:15821979, PMID:17076807, PMID:17369431, PMID:18650403, PMID:20028476, PMID:20708590, PMID:23023172, PMID:24324742, locus:2030551; locus_type=protein_coding
AT1G22080.1	chr1:007792404	0.0	C/7792404-7792412,7792628-7792715,7792790-7792977,7793225-7793312,7793389-7793735,7793811-7794089	AT1G22080.1 CDS AT1G22080 ID=AT1G22080.1; Parent=AT1G22080; Name=AT1G22080.1; Note=Cysteine proteinases superfamily protein; conf_class=1; computational_description=Cysteine proteinases superfamily protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G19515.2)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:2030566; locus_type=protein_coding
AT1G22080.2	chr1:007792404	0.0	C/7792404-7792412,7792628-7792715,7792790-7792977,7793225-7793312,7793389-7793735,7793811-7794089	AT1G22080.2 CDS AT1G22080 ID=AT1G22080.2; Parent=AT1G22080; Name=AT1G22080.2; Note=Cysteine proteinases superfamily protein; conf_class=1; computational_description=Cysteine proteinases superfamily protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G19515.2)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=*****; Dbxref=locus:2030566; locus_type=protein_coding
AT1G22090.1	chr1:007795721	0.0	W/7795721-7795774,7795883-7796032,7796133-7796319,7796406-7796527,7796677-7796763,7796863-7797252	AT1G22090.1 CDS AT1G22090 ID=AT1G22090.1; Parent=AT1G22090; Name=AT1G22090.1; Note=hypothetical protein; conf_class=1; symbol=emb2204; full_name=embryo defective 2204; computational_description=embryo defective 2204 (emb2204)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626%2C Arabidopsis thaliana (InterPro:IPR006462)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF626) (TAIR:AT1G02770.1)%3B Has 202 Blast hits to 201 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 202%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:15266054, PMID:16776300, PMID:20226671, PMID:20736450, locus:2030576; locus_type=protein_coding
AT1G05713.1	chr1:007797593	0.0	C/7797593-7797802	AT1G05713.1 lnc_RNA AT1G05713 ID=AT1G05713.1; Parent=AT1G05713; Name=AT1G05713.1; locus_type=long_noncoding_rna
AT1G22100.1	chr1:007798023	0.0	C/7798023-7798151,7798221-7798805,7798886-7798996,7799085-7799125,7799315-7799462,7799594-7799800,7799926-7800030	AT1G22100.1 CDS AT1G22100 ID=AT1G22100.1; Parent=AT1G22100; Name=AT1G22100.1; Note=Inositol-pentakisphosphate 2-kinase family protein; conf_class=2; computational_description=Inositol-pentakisphosphate 2-kinase family protein%3B FUNCTIONS IN: inositol pentakisphosphate 2-kinase activity%2C ATP binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Inositol-pentakisphosphate 2-kinase%2C metazoa (InterPro:IPR018009)%2C Inositol-pentakisphosphate 2-kinase (InterPro:IPR009286)%3B BEST Arabidopsis thaliana protein match is: Inositol-pentakisphosphate 2-kinase family protein (TAIR:AT1G59312.1)%3B Has 235 Blast hits to 231 proteins in 87 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 98%3B Fungi - 18%3B Plants - 92%3B Viruses - 0%3B Other Eukaryotes - 27 (source: NCBI BLink).; conf_rating=****; Dbxref=PMID:16107538, PMID:21698461, locus:2030571; locus_type=protein_coding
AT1G22110.1	chr1:007801625	0.0	C/7801625-7802473	AT1G22110.1 CDS AT1G22110 ID=AT1G22110.1; Parent=AT1G22110; Name=AT1G22110.1; Note=structural constituent of ribosome; conf_class=1; computational_description=structural constituent of ribosome%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%3B LOCATED IN: ribosome%2C intracellular%2C chloroplast%3B EXPRESSED IN: 7 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3049 (InterPro:IPR021410)%2C Ribosomal protein L30e (InterPro:IPR000231)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3049) (TAIR:AT1G77932.1)%3B Has 4674 Blast hits to 1855 proteins in 271 species: Archae - 11%3B Bacteria - 643%3B Metazoa - 1218%3B Fungi - 438%3B Plants - 374%3B Viruses - 105%3B Other Eukaryotes - 1885 (source: NCBI BLink).; conf_rating=*****; Dbxref=PMID:14576160, PMID:18775970, locus:2030586; locus_type=protein_coding
AT1G22110.2	chr1:007801625	0.0	C/7801625-7802473	AT1G22110.2 CDS AT1G22110 ID=AT1G22110.2; Parent=AT1G22110; Name=AT1G22110.2; Note=structural constituent of ribosome; Dbxref=PMID:14576160, PMID:18775970, locus:2030586; computational_description=structural constituent of ribosome%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%3B LOCATED IN: ribosome%2C intracellular%2C chloroplast%3B EXPRESSED IN: 7 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3049 (InterPro:IPR021410)%2C Ribosomal protein L30e (InterPro:IPR000231)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3049) (TAIR:AT1G77932.1)%3B Has 4674 Blast hits to 1855 proteins in 271 species: Archae - 11%3B Bacteria - 643%3B Metazoa - 1218%3B Fungi - 438%3B Plants - 374%3B Viruses - 105%3B Other Eukaryotes - 1885 (source: NCBI BLink).; locus_type=protein_coding
AT1G22110.3	chr1:007801625	0.0	C/7801625-7802473	AT1G22110.3 CDS AT1G22110 ID=AT1G22110.3; Parent=AT1G22110; Name=AT1G22110.3; Note=structural constituent of ribosome; Dbxref=PMID:14576160, PMID:18775970, locus:2030586; computational_description=structural constituent of ribosome%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%3B LOCATED IN: ribosome%2C intracellular%2C chloroplast%3B EXPRESSED IN: 7 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3049 (InterPro:IPR021410)%2C Ribosomal protein L30e (InterPro:IPR000231)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3049) (TAIR:AT1G77932.1)%3B Has 4674 Blast hits to 1855 proteins in 271 species: Archae - 11%3B Bacteria - 643%3B Metazoa - 1218%3B Fungi - 438%3B Plants - 374%3B Viruses - 105%3B Other Eukaryotes - 1885 (source: NCBI BLink).; locus_type=protein_coding
AT1G22120.1	chr1:007806655	0.0	C/7806655-7806730,7806838-7806944,7807033-7807101,7807313-7807427,7807606-7807707,7807799-7807906,7808021-7808089,7808178-7808300,7808391-7808488,7808579-7808776,7808875-7809132,7809567-7809632	AT1G22120.1 CDS AT1G22120 ID=AT1G22120.1; Parent=AT1G22120; Name=AT1G22120.1; Note=hypothetical protein; conf_class=5; computational_description=unknown protein%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).; conf_rating=***; Dbxref=locus:2030556; locus_type=protein_coding
AT1TE25110	chr1:007809355	0.0	W/7809355-7810370	AT1TE25110 transposable_element AT1TE25110 ID=AT1TE25110; Name=AT1TE25110; Alias=HELITRONY3
AT1TE25115	chr1:007810371	0.0	C/7810371-7812003	AT1TE25115 transposable_element AT1TE25115 ID=AT1TE25115; Name=AT1TE25115; Alias=ATREP4
AT1TE25120	chr1:007812004	0.0	C/7812004-7812081	AT1TE25120 transposable_element AT1TE25120 ID=AT1TE25120; Name=AT1TE25120; Alias=HELITRONY3
AT1TE25125	chr1:007812082	0.0	W/7812082-7812396	AT1TE25125 transposable_element AT1TE25125 ID=AT1TE25125; Name=AT1TE25125; Alias=ATREP10A
AT1G22130.1	chr1:007812387	0.0	C/7812387-7812524,7812598-7812763,7812883-7813143,7813231-7813292,7813372-7813399,7813535-7813596,7813680-7813698,7813797-7813829,7813922-7813975,7814075-7814259	AT1G22130.1 CDS AT1G22130 ID=AT1G22130.1; Parent=AT1G22130; Name=AT1G22130.1; Note=AGAMOUS-like 104; curator_summary=Encodes a member of the MIKC (MADS box%2C Keratin binding domain%2C and C terminal domain containing )family of transcriptional regulators. AGL104 is expressed in pollen.It forms heterodimers with other MICK family members (AGL65 and A